>input_sequence_17901
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------ATGCAGTCCCCCACCGTGTCCACCGCGCGGCGGCGGCGGC---------CCGCGGGATTCCTCCTGGCCCTCGC
CGTGCTCCTGGCGGCCGTCGGCGCGGCGGCGGCGGCGGGCGGCCCGGCCTCGCCGCAGGACGCCGCGGCGATGCAGGCGG
TCGCCAAGGCGCTGGGCGCGGACAAGGCGCTCTCCGGATGGGGCACCGGCGACCCCTGCTCGTGGGACGGGGTGACCTGC
GACTCCGGCGGCCGCGTCACCGCCGTCCAGGTCAAGAACAAAGGCCTGACGGGGACGCTGGCGCCCGAGGTCCGCAACCT
CACCGCGCTCATGCGCCTCGAGCTCTTCAGCAACAGCCTCACCGGCCCGCTCCCCCCGCTGGCCGGCCTCGACTCGCTCC
AGATCCTCAACATCCACGACAACCGCTTCACCTACATCCCGGGGGATTTCTTCAAGGGGCTCACCGCGCTCAAGGAGGTC
TACCTCGACCACAACCCTTTCGCGGCGTGGCCGTTCCCGGCCGGCCTCGCCGACTGTGTCTCCCTCACCAACTTCTCCGC
CAACAGTGTCAACATGACCGGGACGCTCCCGGACTTCCTCGGCTCGATGCCGTCCCTCCAGCAGCTCAATCTGGCAATGA
ACTCGCTGTCCGGACCCGTGCCGCCGTCTCTCGCCGGCGCGACGTCCCTTGAGGTGCTCTGGCTCAACGGCCAGAATGGG
ACCGACCGCCTCAGCGGGTCGATTAGCTTTGTGGCCAACCTGACTAAGGTCACGCAGCTGTGGCTGCACTCCAACGCCTT
CACCGGCCCCTTGCCGGACTTCTCGGGGCTTACCAGCCTTTTTGAGTTGGATCTCCGGGACAACCAGCTCACCGGTCCGG
TGCCAGCCAGTCTTGTCAACCTCAAGTCTCTGAAGAATGTGAGCCTGGGGAACAATTTGCTGCAGGGACCGACTCCCAAC
TTTGCTCCCTCTGTGGAAGTTGACAAGTCGGCGGGTAAAAATCAATTCTGCTTGCCGCCTGGACAGCCGTGTGATCCCCG
TGTAGACCTGCTGCTGGAGGTAGAGGCTGGGTTCATGTACCCAGCGAAGCTCGCAGCTGGTTGGGCGGGGAACGACCCAT
GCAGATATCAGCTGGGCGTTGTATGTGATAGTGGTAAGAACATCACATCGCTGAATTTTGCCAAAATGGGGCTTAACGGG
AGCATCTCACCATCTATCGGGAAGATTGCCACACTTCAGATGCTATTTCTTTCAGACAACAACATTACTGGCACGGTGCC
GAAGGAGCTCGCTGAGTTGCCAGCACTGAGAAAGGTCGATCTGTCAAATAACAATCTATATGGGAAGCTTCCTGAATTTC
GCAAGAATGTGGAGGTGATACTTGATGGCAACCCAAACTTTGGCAAGCCTGCTCCTCCGCCTGGACCAGGTGGTAGCAGC
AATGACACTAAGCCTGGGGATGGAAGTGGTGGAAGCAACAAGGCTTCCTCTTCTACTGGCGTCATTGTTGGGTCAGTGGT
TGGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGGTTCTATTGCTATAAGAGAAAGCAGAAGCCTTCCGGAAGGG
TGCAGAGTCCACATGCTATGGTCATCCATCCCCGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGGT
GGAAATGCCAATGGTGGTGCGGCCACGAGCGAGCCATATAGCCAGGCAAGCAGTGCCCCCCGTGATATCCATGTCGTTGA
GGCTGGGAATATGGTCATTTCAATTCAAGTACTGCGTAATGTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTG
GTGGGTTTGGCACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCGAATGGAGTCTGGTGTTATG
GGCAACAAGGGGTTAAACGAGTTCAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCTTGTGTCGCTGCT
TGGATACTGTCTTGATGGTAATGAGAGGATTCTTGTATATGAGTACATGCCACAGGGGCCAGTGAGCCAACACCTGTTTG
AGTGGAAAGAACACAATTTGCAGCCATTGGAATGGAAGAGGCGACTCAGCATTGCGCTTGATGTTGCAAGAGGTGTTGAG
TACCTGCACAGCCTTGCTCAGCAAACGTTCATCCACAGAGACTTGAAACCATCAAATATACTTCTTGGTGATGACATGAA
GGCCAAGGTGGCAGACTTTGGATTGGTGCGGCTTGCGCCAGCTGATGGGAAGTGTGTATCAGTAGAGACAAGGCTTGCTG
GAACTTTTGGATATCTTGCCCCCGAGTATGCAGGTGAGCATCCCGTATATTTTGCGCTTCACTTTTCTGATTCTCCTGTA
TACAGTTCAATTAACAAGCACAATATATTTAAACTATGTCATATCCAAAATAGTGTCCGAAT-AATTTGATATTTGTAGT
GATTTTTGGACTGCCATTTAGTTCTGATGA-TTTAGTATTTAAACTGTTATTGATCAGTTTAGTTCTATAGGATTTATTT
AGGTGCTTCATAAATATTAAGATTCAACTAGGTAGAAAATGAGTGTGTATCTGATATATGAGAACTATTGAAAATGTGCT
ACCAAAACATGTGTAGTATTGGACAATCAATTCAGTGATCTACTCTGATGTGCTTGTGTCCTTAGTTGGTCCATTTGACC
AGAAATTAGCATCCTGTTTTATTTTTCTCTCAAAATGGCTAAATGTATGTCGAGTGAACTGCTTTGCGTACTCGAAAGTT
CAAATA--------TTAGTATGTCACGGAGTAGCTGTGGGCACTAAC-ATTAACAAACATGTTCATGAGAAGATCTCTGT
CGC-----------------------------------------------------------------------AAGCTG
AGCTGATTTTGTGCCTTCAAAATGAAGAACTTCCAATAGCCCCAGACTGTGAATGGATCTTCA-TTTTTTTACCTTCAGC
TGGTGCCGCAACTTTCTGTCAGAATCTAGAGTCATTTATTTGAATATGATGCTGTATCATCTTTTTTACTGCATTGTCCC
AGTTAGTGATCTGAGTCAAGCTGCATATTTTTAAAGCGTTTGTTCATCAGTTTCATTTCTGCCACTTGCAATACCTGTAT
AATAACTGAAACCTAACATC-TTTTGTGCAGTTACTGGTCGTGTGACCACAAAAGCTGATGTCTTCAGCTTTGGTGTCAT
TTTGATGGAGCTGGTCACGGGACGCAGGGCACTTGATGACACACAGCCTGAGGATAGCATGCACCTGGTTACATGGTTCC
GGAGAATGCAGCTCAACAATGATACGTTCCAGAAGGCAATCGACACAACTATCGACCTTGATGAGGAGACCTTAGCCAGC
GTTAGCACGGTCGCACAGCTCGCGGGTCACTGCTGTGCTAGGGAGCCACATCAGAGGCCCGACATGGGTCATGCCGTCAA
CGTGCTCTCCACCCTCTCGGAAGTGTGGAAGCCCGCAGACCCAGATTCAGACGACAGTTACGGCATCGACCTGGACATGA
CGCTGCCTCAGGCGCTGAAGAAATGGCAGGCCTTCGAGGACAGCAGCCATTTCGATGGCGCGACCTCTTCGTTCCTGGCG
AGCCTGGATAACACCCAGACCAGCATCCCGACGCGGCCTCCAGGGTTTGCTGATTCCTTCACCTCCGCCGACGGAAGATA
A-------------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G049800
CACGCGTTCCTTTCCTATTATCTCCG---------GCGTTATTTTCTCCCAGCTGTGCCGCGCATACGATACGATACAAA
CGGCGAGCCGTAATTACGGCCAGACGCGTCGCGGCCAGGCCCGGTCCAGAACTCCAGATGGTCGCCAGCCAGCCAAAAGT
TGTTCCTTTCCCTGTGCCGTCACCGTCAGAAAAGGCAATTCCAGCAAGCAAAAAAAAACCCCGAAAAAAGATAAAACTGA
AACGAGCGTTACAAATAGCTTTTGTTGGCTAGCAAGGAGCACTCCCGAA----AAGCCAGCGGCACGCCAG-CAGCAGCG
CCTTTGGTCGCAGCGAGCGAGCGAGCGTGCGTGGGCCGTCACAGATCAAGTCCATCACGGCCGTCCATCGCGGCCGCACG
CACGCACGCACGCACGGCCGCACGGGGCCGAGCCCGCAGAGCATCCCGCCACAAACCGCGCATGCATTGATTGCTTGCCC
GGACGCGGCACCGCGGCCAGCCAGCGTACGTACGTAACATTACAGGCCACCGCGGACGCTGACTCCCCGGGCCCACACCC
ACCGCCTCCACTCTACTCCACTCCTGCGAGAGGCAGGCGTCTCGGATACCCTCTCCGCCCGCCTCCCCAGACAGACAGGG
GGAAGCAGAAGCCCTGTGACGCTGCGCGCGGGCCCCGCGTCCAGCTCCCCTCCAGCACAGCCCCGCCTTTTGGTGCGGGT
TTCAAGGGTTTCCAATCCTAGCCCCGCAGCCGGGCCCACTTTCCAGCGACGTTACGTATCCAAGACGGCCCCCCGCTCGC
CGTGCGGACCGGGCTGGGGCGGACGCGTGGGGGAGGGGCAGGGGCGTAATTCCGCAGGCCCGCGAACCCTAAATCGGCGC
GGGTGGGCCCCACCCATGTGCCCTCTCTC------------------------------TCTCCTCAGTTAAATCTTCGT
CTGCATCCCGAGACTTACT--CCTCTCTCTCTCTCTCTCTCCTCTCTCTTCCCCCCTTCCGCATCTCTCCCCTCTCCACC
ACCGCAATGCAGTCCCCCACCGTGTCCACCGCGCGGCGGCGGCGGC---------CCGCGGGATTCCTCCTGGCCCTCGC
CGTGCTCCTGGCGGCCGTCGGCGCGGCGGCGGCGGCGGGCGGCCCGGCCTCGCCGCAGGACGCCGCGGCGATGCAGGCGG
TCGCCAAGGCGCTGGGCGCGGACAAGGCGCTCTCCGGATGGGGCACCGGCGACCCCTGCTCGTGGGACGGGGTGACCTGC
GACTCCGGCGGCCGCGTCACCGCCGTCCAGGTCAAGAACAAAGGCCTGACGGGGACGCTGGCGCCCGAGGTCCGCAACCT
CACCGCGCTCATGCGCCTCGAGCTCTTCAGCAACAGCCTCACCGGCCCGCTCCCCCCGCTGGCCGGCCTCGACTCGCTCC
AGATCCTCAACATCCACGACAACCGCTTCACCTACATCCCGGGGGATTTCTTCAAGGGGCTCACCGCGCTCAAGGAGGTC
TACCTCGACCACAACCCTTTCGCGGCGTGGCCGTTCCCGGCCGGCCTCGCCGACTGTGTCTCCCTCACCAACTTCTCCGC
CAACAGTGTCAACATGACCGGGACGCTCCCGGACTTCCTCGGCTCGATGCCGTCCCTCCAGCAGCTCAATCTGGCAATGA
ACTCGCTGTCCGGACCCGTGCCGCCGTCTCTCGCCGGCGCGACGTCCCTTGAGGTGCTCTGGCTCAACGGCCAGAATGGG
ACCGACCGCCTCAGCGGGTCGATTAGCTTTGTGGCCAACCTGACTAAGGTCACGCAGCTGTGGCTGCACTCCAACGCCTT
CACCGGCCCCTTGCCGGACTTCTCGGGGCTTACCAGCCTTTTTGAGTTGGATCTCCGGGACAACCAGCTCACCGGTCCGG
TGCCAGCCAGTCTTGTCAACCTCAAGTCTCTGAAGAATGTGAGCCTGGGGAACAATTTGCTGCAGGGACCGACTCCCAAC
TTTGCTCCCTCTGTGGAAGTTGACAAGTCGGCGGGTAAAAATCAATTCTGCTTGCCGCCTGGACAGCCGTGTGATCCCCG
TGTAGACCTGCTGCTGGAGGTAGAGGCTGGGTTCATGTACCCAGCGAAGCTCGCAGCTGGTTGGGCGGGGAACGACCCAT
GCAGATATCAGCTGGGCGTTGTATGTGATAGTGGTAAGAACATCACATCGCTGAATTTTGCCAAAATGGGGCTTAACGGG
AGCATCTCACCATCTATCGGGAAGATTGCCACACTTCAGATGCTATTTCTTTCAGACAACAACATTACTGGCACGGTGCC
GAAGGAGCTCGCTGAGTTGCCAGCACTGAGAAAGGTCGATCTGTCAAATAACAATCTATATGGGAAGCTTCCTGAATTTC
GCAAGAATGTGGAGGTGATACTTGATGGCAACCCAAACTTTGGCAAGCCTGCTCCTCCGCCTGGACCAGGTGGTAGCAGC
AATGACACTAAGCCTGGGGATGGAAGTGGTGGAAGCAACAAGGCTTCCTCTTCTACTGGCGTCATTGTTGGGTCAGTGGT
TGGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGGTTCTATTGCTATAAGAGAAAGCAGAAGCCTTCCGGAAGGG
TGCAGAGTCCACATGCTATGGTCATCCATCCCCGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGGT
GGAAATGCCAATGGTGGTGCGGCCACGAGCGAGCCATATAGCCAGGCAAGCAGTGCCCCCCGTGATATCCATGTCGTTGA
GGCTGGGAATATGGTCATTTCAATTCAAGTACTGCGTAATGTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTG
GTGGGTTTGGCACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCGAATGGAGTCTGGTGTTATG
GGCAACAAGGGGTTAAACGAGTTCAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCTTGTGTCGCTGCT
TGGATACTGTCTTGATGGTAATGAGAGGATTCTTGTATATGAGTACATGCCACAGGGGCCAGTGAGCCAACACCTGTTTG
AGTGGAAAGAACACAATTTGCAGCCATTGGAATGGAAGAGGCGACTCAGCATTGCGCTTGATGTTGCAAGAGGTGTTGAG
TACCTGCACAGCCTTGCTCAGCAAACGTTCATCCACAGAGACTTGAAACCATCAAATATACTTCTTGGTGATGACATGAA
GGCCAAGGTGGCAGACTTTGGATTGGTGCGGCTTGCGCCAGCTGATGGGAAGTGTGTATCAGTAGAGACAAGGCTTGCTG
GAACTTTTGGATATCTTGCCCCCGAGTATGCAGGTGAGCATCCCGTATATTTTGCGCTTCACTTTTCTGATTCTCCTGTA
TACAGTTCAATTAACAAGCACAATATATTTAAACTATGTCATATCCAAAATAGTGTCCGAAT-AATTTGATATTTGTAGT
GATTTTTGGACTGCCATTTAGTTCTGATGA-TTTAGTATTTAAACTGTTATTGATCAGTTTAGTTCTATAGGATTTATTT
AGGTGCTTCATAAATATTAAGATTCAACTAGGTAGAAAATGAGTGTGTATCTGATATATGAGAACTATTGAAAATGTGCT
ACCAAAACATGTGTAGTATTGGACAATCAATTCAGTGATCTACTCTGATGTGCTTGTGTCCTTAGTTGGTCCATTTGACC
AGAAATTAGCATCCTGTTTTATTTTTCTCTCAAAATGGCTAAATGTATGTCGAGTGAACTGCTTTGCGTACTCGAAAGTT
CAAATA--------TTAGTATGTCACGGAGTAGCTGTGGGCACTAAC-ATTAACAAACATGTTCATGAGAAGATCTCTGT
CGC-----------------------------------------------------------------------AAGCTG
AGCTGATTTTGTGCCTTCAAAATGAAGAACTTCCAATAGCCCCAGACTGTGAATGGATCTTCA-TTTTTTTACCTTCAGC
TGGTGCCGCAACTTTCTGTCAGAATCTAGAGTCATTTATTTGAATATGATGCTGTATCATCTTTTTTACTGCATTGTCCC
AGTTAGTGATCTGAGTCAAGCTGCATATTTTTAAAGCGTTTGTTCATCAGTTTCATTTCTGCCACTTGCAATACCTGTAT
AATAACTGAAACCTAACATC-TTTTGTGCAGTTACTGGTCGTGTGACCACAAAAGCTGATGTCTTCAGCTTTGGTGTCAT
TTTGATGGAGCTGGTCACGGGACGCAGGGCACTTGATGACACACAGCCTGAGGATAGCATGCACCTGGTTACATGGTTCC
GGAGAATGCAGCTCAACAATGATACGTTCCAGAAGGCAATCGACACAACTATCGACCTTGATGAGGAGACCTTAGCCAGC
GTTAGCACGGTCGCACAGCTCGCGGGTCACTGCTGTGCTAGGGAGCCACATCAGAGGCCCGACATGGGTCATGCCGTCAA
CGTGCTCTCCACCCTCTCGGAAGTGTGGAAGCCCGCAGACCCAGATTCAGACGACAGTTACGGCATCGACCTGGACATGA
CGCTGCCTCAGGCGCTGAAGAAATGGCAGGCCTTCGAGGACAGCAGCCATTTCGATGGCGCGACCTCTTCGTTCCTGGCG
AGCCTGGATAACACCCAGACCAGCATCCCGACGCGGCCTCCAGGGTTTGCTGATTCCTTCACCTCCGCCGACGGAAGATA
AACCCCGCTTGTT------GGAAAGCCAGAAGCTCTGCTCGCTG-AAATGATCATTCTGTTCATTCATTCCTTTAGCCTC
TTCTTCAACCCCCCCTCCCTCCCTCCCTGCCTTCTAAATGTTGCTGGATTTGGCCCTGTGCTGCCATGCCATGTTAGCTG
TCCTTGGATCATGTATGATGATGTGGTCTTTACTCGAGAATTCCCTGGAAGTCC---GCGACTAACTGCTC---------
--TATTATTGTTAGCTTTGAACCTAAGTAGAAGATTGTTAGGGTTTGTTGGCTTGTACGTACTCAACATTGATCTGCTCC
ATGATTAAATTGATCCCTGTCAGTATCCTCAACAGCTCCACTGGCCTGGCTGTGTGGTCGTTGTTATTCAATCCCTTTTC
TCCTTCCTGGGACTGTCAT----GAGCC-------AGCCTTACCTCC---------------------------------
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---ATCATTCGGCCTGGTTCAGCCGTCTCACCTGCCCG---CGATCACGGGGCGGATAGACGCTACACCCTGTCGTGTCT
AGCGTGTGGCGCCAGGTTGGAACCTGGAAATACTCCAGCATAAACG----------------------------------
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--------------------------------------------------------------------CGTTG----CGG
CCGCTGAGTCAGCAGTGAGCATCCCAGTCTTTGCAGCTGGTCGCCAGCTAATCCGGCATTACAAAAAAATTACTTATAAA
GTTGGTG-------------------------------------------------GTCTGATCTCTGATGGCCTTAGAT
TTGGGATCAGCCCCCATGTTACTGCTGACCTGCGACAGGAGTCCGGACAGCGACGCGCCGCTAGATTAGCGCCTACTACA
ACTAAGATAAGAACGAGAGGAGGCC-------------GAATGATCAAACGACGTGACCCGGGTCCGATATGAAATGCTT
ATGCCTACTCTAATAATGCGATCCG-GTTACAGTGATGGCGACGCGGGTGCATGGGCATGGCCCTGTCCCGTCGCATTCG
CACGCCAAATTAAACG---AAAAACCTGTGCGT----ATATTTTCTGGTGGTGGGTGGTGGATGGTGCTGGCAGTTGCAA
AAGGCATCTTGTTTCTTCTCGCTGTCCACACCGGTCCGGGCTCACGTC
>chr4D_1
CACGCGTTCCTTTCCTATTATCTCCGGCGCCGCCTGCGTTATTTTCTCCCAGCTGTGCCGCGCATACGATAC-----AAA
CGGCGAGCCGTAATTACGGCCAGATGTGTCGCGGCCAGGCCCGGTCCAGAC--------GGTCGCCAGCCAGCCAAAAGT
TGTTCCTTTCCCTGTGCCGTCACCGTCAAAAAAGGCAATTCCAGCCAGCAAAAAAAACCCG---AAAAAGATAAAACTGA
AAAGAGCGTTACAAATACCTTTTGTTGGCTAGCAAGGAGCACTCCCGAACGAAAAGCCTGCGGCACGCCAGCCAGCAGCG
CCTTTGGT----------------GCGTGGGCCGGCCGTCACAGATCAAGTCCATCA-GGCCGTCCATCGCAGCCGCACG
CACGCACGGCCGCACGGGGCA--------GAGCCCGCAGAACATCCCGCCCCAAACCGCGCATGCATTGA----TTGCCC
GGACGCGGCACCGCGGCCAGCCAGCGTGCGTACGTAG---TACACCCCACCGCAGACCCTGACTACCCGGGCCCACACCC
ACCGCCTCCACTCTACTCCACTGCTACGAGAGC----CGTCTCGGATACCCTCTCCGCCCGCCTCCCCAGACAGA--GGG
GGAAGCAGAAGCCCTGTGACGCTGCGCGCGGGCCCCGCGTCCAGCTCCCCTCCAGCACAGCCCCGCCTTTTGGTGCGAGT
TTCAAGGGCTTCCCATCCTAGCCCCGCGGCCGGGCCCACCCGCCAGCGACGTGACGAATCCAAGACGGGG-CCCGCTCGC
CGTGTGGACCGGGCTGGAGCGGACGCGTGGGGGAGGGGCAGGGCCGTAATTCCGCAGGCCCGCGAACCCTAAATCGGCGC
GGGTGGGCCCCGCGCATGTGCCCTCTCTCCGCCCATGTGCCCGGCGCTCCCTCTCTCTCTCTCCTCAGTTAAATCTTCGT
CTGCATCCCGAGACTTACTCCCCTTTCTCTCTCTCTCTCTC-----TCTTCCCCCCTTCCGCATCTCTCACCTCTCCGCC
ACCGCAATGCAGTCCCCCACCGTATCCACCGCGCGGCGGCGGCGGCCCGGCCTCGCCGCGGGATCCCTCCTGGCCCTGGC
CGTGCTCCTGGCGGCCGTCGGCGCGGCGGCGGCGGCGGGGGGCCCGGCCTCGCCGCAGGACGCGGCGGCGATGCGGGCGG
TCGCCAAGGCGCTGGCGGTCGACGGGTGGGTCGACTCCGC---------CGACCCCTGCTCGTGGGCCGGGGTGACCTGC
GACTCCGGTGGCCGCGTCACCGGCGTCCAGGTCAAGGACAAAGGCCTGACGGGGACGCTGGCGCCCGAGGTCCGCAACCT
CACCGCGCTCATGCGCCTCGAGCTCTTCAACAACAGCCTCACCGGCCCGCTCCCCTCGCTGGCCGGCCTCGACTCGCTCG
AGTACCTCAACCTCCACGACAACGGCTTCACCTTCATCCCGGAGGATTTCTTCAAGGGGCTGACCGCGCTCAAGGAGGTC
TACCTCGACCACAACCCTTTCAAGCCGTGGCCGTTCCCGACCAGCCTCGGGGACTGCCAATCGATCACCAACTTCTCCGC
CAACAGCGTCAACATGACCGGGACGCTCCCGGACTTCTTCGGCTCGATGCCGTCCCTCCAGGAGCTCAATCTGGCAGGGA
ACTCACTGTCCGGGCCAGTGCCGCCGTCCCTGGCCGATGCGCCG---CTTGAGGTGCTCTGGCTCAACCAGAAAATAGAG
ACCACCGGCTTCAGCGGGTCGATTAGCTTCGTCGCCAAGATGACCAAGGCCACGAAGCTGTGGCTGCACTCCAACGACTT
CACCGGCCCCTTGCCGGACTTCTCGAAGCTTACCAGCCTTTCTGATTTGGGTCTCCGTGACAACCAGCTCACCGGTCGAG
TGCCAGACAGTCTTGTCAACCTGAAGTCTCTGAAGACGGTGAGCCTGGGGAACAATTTGCTGCAGGGACCGAGTCCCAAC
TTTGCTCCCTCTGTTGAAGTTGACAGGA---CGGGTAAAAATCAATTCTGCTTGCCGCCTGGACAGCCGTGTGATCCCCG
TGTAGACCTGCTGCTGGAGGTAGAGGCTGGGTTCATGTACCCAGCCAAGCTCGCAGCTGGTTGGGCGGGGAACGACCCAT
GCAGCTATCAGCCGGGCGTTGTATGTGATAGTGGTAAGAACATCACGTCGCTGAATTTTGCCAAAATGGGGCTTAACGGG
AGCATCTCACCATCTATCGGCAAGATTGCCACACTTGAGACGCTACTTCTTTCAGACAACAACATTACTGGCACGGTGCC
GAAGGAGCTCGCTGAGTTGCCAGCACTGAAAAAGGTCAATCTGTCAAATAACAATCTATATGGGAAGCTTCCTGAATTTC
GCAAGAATGTGTTGGTGATACTTGATGGCAACCCAAACTTCGGCAAGCCTGCTCCTGCGCCTGGACCAGGTGGTAACAGC
AATGACACTAAGCCTGGGGATGGAAGTGGTGGAAGCAACAAGGCTTCCTCTTCTACCGGCGTCATTGTTGGGTCAGTGGT
TGGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGGTTCTATTGCTACAAGAGAAAGCAGAAGCCTTCCGGAAGGG
TGCAGAGTCCACATGCTATGGTCATCCATCCCCGGCACTCAGGGTCAGATCCTGACATGGTAAAGATCACAGTTGCTGGT
GGAAATGCCAATGGTGGTGCGGCCACAAGCGAGCCATATAGCCAAGCAAGCAGTGCCCCCCGTGATATCCATGTCGTTGA
GGCTGGGAATATGGTCATTTCAATTCAAGTACTGCGTAATGTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTG
GTGGGTTTGGTACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCGAATGGAGTCTGGTGTTATG
GGCAACAAGGGGTTAAATGAGTTCAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATAGGAACCTTGTATCGCTGCT
TGGATACTGTCTTGATGGTAATGAGAGGATTCTTGTATATGAGTACATGCCACAGGGTCCAGTGAGCCAACACCTGTTTG
AGTGGAAAGAACACAATTTGCAGCCGTTGGAATGGAAGAGGCGACTCAGCATTGCGCTCGATGTTGCAAGAGGTGTTGAG
TACCTGCACAGCCTTGCTCAGCAAACCTTCATCCACAGAGACTTGAAACCATCAAATATACTTCTTGGTGATGACATGAA
GGCCAAGGTGGCAGACTTTGGATTGGTGCGGCTTGCGCCAGCTGATGGGAAGTGTGTATCAGTAGAGACAAGGCTTGCTG
GAACTTTTGGATATCTTGCCCCCGAGTATGCAGGTGAGCATCCTGTATATTTTGTGCTTCAGTTTTCTGATTCTCTTCTA
TACAGTTCAATTGACAAGCACAATATATTTAAACTACGTCATATCCAAAATAGTATCCGAATAAATTTGATATTTGTAGT
GATTTTTGAACTGCCATTTAGTTCTGATGA-TTTACTATTTAAACTGGTATTGATCAGTTTAGTTCTATAGGATTTATTT
AGGTGCTTCATAAATTCGAATATTCAAATAGGTAGAAAATGTGTGTGTATCTGATATATGATAACTGTTGAAAATGTGCT
ACCAAAACATGTGTAGTATTGGACAATCAATCCAATGATCAACTCTGATGAGCTTATGTCCTTAGTTGGTCCATTTGACC
AGAAGTTAGCATCCTATTTTATTTTTCTCTCAAAATGTCTAAATGTATGTTGAGTTAACTGCTTTGCTTACTGG-AAGTA
CAAATA--------TTAGTATGTCACGGAGTAGCTGTGTACACTTTTTATTAACAAACATGTTCATGAGAAGATTTCTTT
GGCA----------------------------------------------------------------------AAGCTG
AGCTAATTTTGTGCCTTCAAAATGAAGAACTTCCAATAGCCCCAGACCGTGAATGTATCTTCAATTTTTTTACCTTCAGC
TGCTGCAGCAACTTCCTGTCAGGAACTACACTCATTTATTTAAATATAATGCTGCATCATCTTTTTTACTGCATTGCCCC
AGTTAGTGATCTGAGTCAAGCTGCATATTTTTAAAGCGTTTGTTCATCAGTTTCATTTCTGCCACTTGCAATACCTGTAT
CATAACTAAAACCTAACATC-TTTTGCGCAGTTACTGGACGTGTGACCACAAAAGCTGATGTCTTCAGCTTTGGTGTCAT
TTTGATGGAGCTGGTCACGGGACGCAGGGCGCTTGATGACACACAACCTGAGGATAGCATGCACCTGGTTACATGGTTCC
GGAGAATGCAGCTCAACAATGATACGTTCCAGAAGGCGATCGACACAACCATCGACCTTGATGAGGAGACCTTAGCCAGC
GTTAGCACGGTCGCACAGCTCGCTGGTCACTGCTGTGCTAGGGAGCCACATCAGAGGCCCGACATGGGTCATGCCGTCAA
CGTGCTCTCCACCCTTTCAGAAGTGTGGAAACCTGCAGACCCAGATTCAGACGACAGTTACGGCATTGACCTGGACATGA
CGCTGCCTCAGGCGTTGAAGAAATGGCAGGCCTTTGAGGACAGCAGCCATTTCGACGGCGCGACCTCTTCGTTCCTCGCG
AGCCTGGATAACACCCAGACCAGCATCCCGACGCGGCCTCCAGGGTTTGCTGATTCCTTCACCTCCGCCGACGGAAGATA
AACCGCGCTC----------GAAAGCCAGAAGCAAG-----------ATGATCATTCTGTTCATTCATTCCTTTAGCCTC
TTCACCC---------CCCTCCCTCCCTGCCTTTTAAATGTTGGTGGATTTGGCTTTGTGCTGCCATGCCATGTTAGCTG
TCCTTCGATCATGTATTATGATGTGGTCTTTACTCGAGAATTCCCTGGAAGTCC---GGGACTAACTGCTCGGTGCTGCT
GCTATTATTGTTAGCTTTGAACCTAAGTAGAAGATTGTTAGGG-TTGTTGGCTT----GTACTCAACATTGATCTGCTCC
ATGATTAAATTGATCCCTGT---TATCCTCAACAGCTCCACTGGTCCGGTGGTGTGGTCGTTGTTATACAATCCTTTTTT
--CTTCCTGGGACTATCAT----GACTCATGAGGTAGCTTTTGAGGAG--------------------------------
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---------------------------------------------------------------------GCCTACCTCCA
TTAATTATTCGGCTTGGTTCAGCCGTCTCACCTGCCCGT---GATCACGGAGCGGATAGACGCTACACCCTGTCTAAT--
---GTGTGGTGCCAGGTTGGAACCTGGAAATACTCCAGCATAAAAGTGGCAGCTAGTAGTGTGCTACCTTCGTCCTGGTT
TATTGATTGCCTTTGTATTTTGTGTCAAATTTTGACTTTAGATTTAACTAACGAATGTTAATGCATGTCACAAAAAAATA
TTATTGAAAACTATGTTTGAATACAAATCCAATGATAGAATATTTGATGACATGCATCAACATTTTGCTAGTTAAATCTA
TGATCAAAATTGGGCACAAAATACGAAGGGACCAATAAACCGGGACGGAAGTAGTACCTCTTTGAAGCCGTTGCGGCCGG
CCGCTGATTCGGCAGTGAGCATCGCACTCTTTTCAGCTGGTCGCCAGCTAATCCGGCATTA-TTAGAGAAAATAATCAAA
GTTGGTCGTGCGATGGCCTTGGATTTGGGATCAGCGAGGAGGACAGGTCATGGAGAGTCAATCAAAT-------------
----------CCCCCATGTTACTGCTGACCTGCGACAGGAGTCCGGACAGCGACGCGCCGCTAGATTAGCGCCTACCACA
ACTAAGATAAGAACAAGAGGCCGAGAGAGATGCTGGATGAATGATCAAACGACGTGACTCGAGTCTGATATAAAATGCTT
ATGCTTATTCTAATAATGCGTTCCA-GTTATGCTGACGGCGACCCGAGTGCATGGGCATGGCCATGTCCCGTCGGATTCG
CACGCCAAAATTAAAC---GAAAACCTGTACGTACACATATTTTCTGGTGGTGGTGGGTGGTGCA----GGCAGTTGCGA
AAGGCATCTTGTTTCTTCTCGCTGTCCACACC----------------
>chr4A_2217
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-------------------------------CACTTCAGATGCTATTTCTTTCAGACAACAACATTACTGGCACGGTGCC
GAAGGAGCTCGCTGAGTTGCCAGCACTGAGAAAGGTCGATCTGTCAAATAACAATCTATATGGGAAGCTTCCTGAATTTC
GCAAGAATGTGGAGGTGATACTTGATGGCAACCCAAACTTTGGCAAGCCTGCTCCTGCGCCTGGACCAGGTGGTAGCAGC
AATGACACTAAGCCTGGGGATGAAAGTGGTGGAAGCAACAAGAGATCCTCTTCTACCGGTGTCATTGTTGGGTCAGTGGT
TGGAGCTGTTGCTGTACTAGGCCTTATTGCTGCATTAGGATTCTATTGCTATAAGAGAAAGCAGAAGCCTTCCGGAAGGG
TGCAGAGTCCACATGCTATGGTCATCCATCCCAGGCACTCAGGGTCAGACCCTGACATGGTAAAGATCACAGTTGCTGGG
GGAAATGCCAATGGTGGTGCGGCCACGAGCGAGCCATATAGCCAGGCAAGCAGTGCCCCCCGTGATATCCATGTCGTTGA
GGCTGGGAATATGGTCATTTCAATTCAAGTACTGCGTAATGTGACCAACAACTTCAGTCAGGAGAACATCCTTGGTCGTG
GTGGGTTTGGCACTGTCTACAAGGGTGAGCTCCATGATGGTACAAAAATTGCTGTGAAGCGAATGGAGTCTGGTGTTATG
GGCAACAAGGGGCTAAACGAGTTTAAATCAGAGATTTCTGTGCTGACCAAGGTCCGTCATCGGAACCTTGTGTCACTGCT
TGGATACTGTCTTGATGGTAATGAGAGGATTCTTGTATACGAGTACATGCCACAGGGTCCAGTGAGCCAACACCTGTTTG
AGTGGAAAGAACACAATTTGCAGCCGTTGGAATGGAAGAGGCGACTCAGCATTGCGCTTGATGTTGCAAGAGGTGTTGAG
TACCTGCACAGCCTTGCTCAGCAAACGTTCATCCACAGAGACTTGAAACCATCAAATATACTTCTTGGTGATGACATGAA
GGCCAAGGTGGCAGACTTTGGATTGGTGCGGCTTGCGCCAGCTGATGGGAAGTGTGTATCAGTAGAGACAAGGCTTGCTG
GAACTTTTGGATATCTTGCCCCCGAGTATGCAGGTGAGCATCCCGTATATTTTGTGCTTCACTTTTCTGATTCTCTTGTA
TACAGTTCAATTAACAAACACAATATATTTAAACTATGTCATATCCAAAATAGTGTCCAAAT-AATTTGATATTTGTAGT
GATTTTTGGACTGCCATTTAGTTCTGATGATTTTAGTATTTAAACTGTTATTGATCAGTTTAGTTC--TAGGATTTATTT
AGGTGCTTCATAAATATCATGATTCAACTAGGTTGAAAATGAGTGTGTATCTGATATATGAGAACTATTGAAAATGTGCT
ACCAAAACATGTGTAGTATTGGACAATCAATTCAGTGATCTACTCTGATGAGCTTGTGTCCTTAGTTGGTCCATTTGACC
AGAAATTAGCATGCTGTTTTATTTTTCTCTCA-AATGGCTAAATGTATGTCGAGTGAACTGCTTTGCGTACTCAAAAGTT
CAAATATTAGTAATTTAGTATGCCACGGAGTAGCTGTGGGCACTAAC-ATTAACAAACATGCTCATGAGAAGATCTCTTT
CGCAAGCTGAGCTAATTTTGTGCCTTCAAAATCAAAATAAAGAACAAACTTGTTCATGAGAAGATTTCTTTCACAAGCTG
AGCTAATTTTGTGCCTTCAAAATAAATAACTTCCAATAGCCCCAAACCGTGAATGGATCTTCATTTT-TTTACCTTTAGC
TGGTGCAGCTACTTCCTGTCAGGAACTAAAGTCATTTATTTAAATATGATGCTGCATCATCTTTTTTACTGCATTGTCCC
AGTTAGTGATCTGAGTCTAGCTGCATATTTTAAAGCTC---------------CATTTCTGCCACTTGCAATACCTGTAT
AATAACTAAAACCTAACATCTTTTTGCGCAGTTACTGGACGTGTGACCACAAAAGCTGATGTCTTCAGCTTTGGTGTCAT
TTTGATGGAGCTGGTGACGGGACGCAGGGCGCTTGATGACACACAGCCTGAGGATAGCATGCACCTGGTTACATGGTTCC
GGAGAATGCAGCTCAACAATGATACGTTCCAGAAGGCGATCGACACAAGCATGGAGCTTGATGAGGAGACCTTAGCCAGC
GTTAGCACGGTCGCACAGCTCGCGGGTCACTGCTGTGCTAGGGAACCACATCAGAGGCCCGACATGGGTCATGCCGTGAA
CGTGCTCTCTACTCTTTCGGAAGTGTGGAAACCCGCAGACCCAGATTCAGACGACAGTTACGGCATCGACCTGGACATGA
CGCTGCCTCAGGCGTTGAAGAAATGGCAGGCCTTTGAGGACAGCAGCCATTTTGACGGTGCGACCTCTTCGTTCCTGGCG
AGCTTGGATAACACCCAGACCAGCATCCCGACGCGGCCTCCAGGGTTTGCTGATTCCTTCACCTCCGCCGACGGAAGATA
AACCCTGTTTGTTGGAAAGGGAAAGCCAGAAGCTCCGCTCGCTCAAAATGATCATTCTGTTCATTCATTCCTTTAGCCTC
TTCACCCCTCCT-----CCTCCCTCCCTGCCTTTTAAATGTTGGTGGATTTGGCCTTGTGCTGCCATGCCATGTTAGCTG
TCCGTCGATCATGTATGATGATGTGGTCTTTACTCGAGAATTCCCTGGAAGTCTGCTGCGACTAACCGCTCGGTGCTGCT
GCTATTATTGTTAGCTTTGAACCTAAGTAGAAGATTGTTAGGG-TTGTTGGCTT----GTACTCAACATTGATCTGCTCC
ATGATTAAATTGATCCCTGTCAGTATCCTCAACTGCTCCACTGGTC-------------GTTGTTATCCAATCC-TTTTT
--CTTCCTGGGACTATCATTTCTGAGCC-------AGCCTTTGAGGAAAGGAGGTGCGGCTAATCTGCACCCGGGCTCAG
CTGCACCCACGCTTAGAAAAAAATTCAAAAAAAATACTAGAAAAATTCAAAAAATTCCAATTTTTTTTTGTGGTGGTAGA
TAATTTGACGCGTGAGGTGCGCCCCAAAATTCAACTCATTTGAGTATCTGAGCAGCTCTCGGCAAAAAAACACAAAATCA
GGGTCTGTAAAAATGTTTACTGTTTCACGCACTGTTTTGACCCGATTTGTCTTTTTTGCCGAGAGCTACTTGGATGTCCA
AATAAGTTGAATTTTGGGGCGCACCTCACGCGTTAAATTATCTACCACCACAAAAAAAATTGGAATTTTTTAATTTTTTC
TAGTATTTTTTTTTTTGAATTTTTTGCTGAGAGGGAGTAGATGAGCCCGGTCACCGTTTTGAGTTTCCCGCCTACCCCCA
TT-ATTCTTGGGCCTGGCTCAGCCGTCTCACCTGCCCGCGGCGATCGCGGAGCGGATAGACGCTACACCCTGTCTAATT-
----TGTGGCGCCAGGTTGGAACCTGGAATTGCTCCAGCATAATAAAACTGGAGTATGCC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGAAGCCGTTG----CGG
CCGCTGACTCAGCAGTGAGCATCCCAGTCTTTTCAGCTGGTCGCCAGCTAATCCGGCATTAGTTAGAAAAAATAAATAAA
GTTGGTC-------------------------------------------------GTCAATCAAAT-------------
----------CCCCCATGTTACTGCTGACCTGCGACAGGAGTCCGGACAGCGATGCGCCGCTAGATTAGTGCCTACTACA
ACTAAGATAAGAACAAGAGGCCGAGAGAGATGCCGGATGAATGATCAAACGACGTGACTCGAGTCTGATATAAAATGCTT
ATGCTTATTCTAATAATGCGTTCCAAGTTATAGTGATGGCGACGCGACTGCATGGGCATGGCCCTGTCCCATCGGATTCG
CACGCCGAATTAAACGTTCGAAAACCTGTGCAT----ATATTTTCTGGTGGTGGATGGTG-------CTGGCAGTTGCAA
AAGGCATATTGTTTCTTCTCGCTGTCCACACC----------------
>SNPs
------------------------------------------------------------------------SSSSS---
------------------------S-S-----------------------SSSSSSSSS---------------------
----------------------------S----------------S-----------S--SSSS----------------
--S--------------S----------------------------------------S---------------------
--------SSSSSSSSSSSSSSSS-----S-SS------------------------S-------------S--------
--------SS-------SSSSSSSSSSSS-----------S---------S-------------------SSSS------
---------------------------S--------SSSS----SS-------S---S------S---------------
----------------------S--S------SSSSS--------------------------------------SS---
-----------------------------------------------------------------------------S--
--------S----S-------------S-----------SSS----------S---S-----------SSS---------
----S------------S-------------------------S------------------------------------
-----------S-S------------------------------------------------------------------
------------------------S----------------SSSSS-----------------------S-------S--
-----------------------S----------------------------------------S------------S--
---------------------------------------S-----------------------S----------S-----
---------------SS-SS---SS-SS-S--SS-SSSSSSSSSSSSSS-----------------S-------------
--------S-------------S-------------S-------------------------------------------
-----------------------------S-------------------------S-----------------------S
--SS-------S-----------S---------S--------S------------------S------------------
---------------------SS-S--------------S--S------SS-----SSSS--SS----------------
------S------------------------------S-----------------------S--------------SS--
----S--------S--S-----------S--S----SS---S--SSS---------------------SSSS-S-SS-S-
---SS-S--S-------------------S--S-----SS----S----S----S---------------------S---
-------------------------SS--------------S---S----S------S-------------------SS-
------S---------------S-------------SS----------------------------------S-------
--------------S----------S-SSSS-------------------------------------------------
---------------------------------------------S----------------------------------
----S-------S---------------------------------S---------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------S-----------------------
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---------------------------------------------------------S----------------------
-------------------------S------------------------------------------------------
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------------------------------------------------------S--------------------S----
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-----------------S--------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
----S------------------------------------------S--------------------------------
------S-------S-------S-S---S------------S------------S-------------------------
--------------------------------------------------------------------------------
-------S------------------S-----------S-----------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------S-----------S------------------------------
--------------------------------------------------------------------------------
---------------S--------------S-------------------------------------------------
--------------S-------------------S--------------------S------------------------
--------------------------------------------------------------------------------
-----------------------------------S-------S------------------------------------
---SS-SSS--SSSSS-----------------S---------S-----------S------------------------
-----S--------------------------------------------------------------------------
-------------------------------------------S----------SSSS----------------------
--------------------------------------------S-S--SS----------------S------S----S
SS------------S--------------------------SSSSSS---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------S-----------------------SSS-SS
SSS-----------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------S----------------------------SSS-S---SS-SSS-----
------S----------------------------------------------------SSSSSSS-SSSSSSSSSSSSS
SSSSSSSSSS----------------------------------------------------------------------
--------------S-----SS-SS---------------------------------S--S---S-----S--------
----S--S------------S---S-----S---------------S---------------------------S-----
-------------------S----------------------------------S------SSSSSS-------------
--------------------------------SSSSSSSSSSSSSSSS
>forward_777
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-------------------------------------ACTTTCCAGCGACGTTACGT-----------------------
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>reverse_1770
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---------CTCAGCGGGTCGATTAGCTT---------------------------------------------------
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>forward_1474
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--------------CACGACAACCGCTTCACCTA----------------------------------------------
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>reverse_2537
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--------------------------------------------------------TGGCGTCATTGTTGGGTCAG----
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>forward_1793
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-------------GCGGGTCGATTAGCTTTGTG-----------------------------------------------
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>reverse_3146
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-------------------------ATTGGAATGGAAGAGGCGACT----------------------------------
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>forward_3098
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--------------------------------------ATGAGTACATGCCACAGGGG----------------------
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>reverse_5167
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----------------------------------------------TGGCTGTGTGGTCGTTGTTA--------------
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------------------------------------------------
