Multiple sequence alignment - TraesCS7D01G555200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G555200 chr7D 100.000 2357 0 0 1 2357 638659833 638657477 0.000000e+00 4353.0
1 TraesCS7D01G555200 chr7D 86.619 695 61 14 927 1593 631270645 631271335 0.000000e+00 739.0
2 TraesCS7D01G555200 chr7D 87.191 445 33 7 1667 2104 631214427 631214854 3.520000e-133 484.0
3 TraesCS7D01G555200 chr7D 81.106 651 72 27 932 1542 631213573 631214212 7.620000e-130 473.0
4 TraesCS7D01G555200 chr7D 81.068 618 85 23 996 1583 631065544 631064929 4.590000e-127 464.0
5 TraesCS7D01G555200 chr7D 84.439 437 38 16 1666 2072 631064787 631064351 1.010000e-108 403.0
6 TraesCS7D01G555200 chr7D 85.093 322 24 6 1618 1923 631272169 631272482 8.180000e-80 307.0
7 TraesCS7D01G555200 chr7D 89.706 136 14 0 2142 2277 631215002 631215137 8.660000e-40 174.0
8 TraesCS7D01G555200 chr7D 95.833 96 2 2 801 894 631213379 631213474 1.130000e-33 154.0
9 TraesCS7D01G555200 chr7D 78.676 136 19 6 2148 2275 631272560 631272693 5.400000e-12 82.4
10 TraesCS7D01G555200 chrUn 91.896 728 43 11 801 1514 282489888 282490613 0.000000e+00 1003.0
11 TraesCS7D01G555200 chrUn 91.896 728 43 11 801 1514 357067411 357066686 0.000000e+00 1003.0
12 TraesCS7D01G555200 chrUn 90.759 606 35 6 1518 2104 88659817 88659214 0.000000e+00 789.0
13 TraesCS7D01G555200 chrUn 95.178 394 16 3 82 474 282488966 282489357 9.250000e-174 619.0
14 TraesCS7D01G555200 chrUn 95.619 388 14 3 88 474 357068327 357067942 9.250000e-174 619.0
15 TraesCS7D01G555200 chrUn 89.888 445 38 4 1667 2104 357628019 357628463 1.220000e-157 566.0
16 TraesCS7D01G555200 chrUn 80.076 788 84 38 801 1542 326319163 326319923 3.470000e-143 518.0
17 TraesCS7D01G555200 chrUn 82.500 560 68 18 1002 1542 357627256 357627804 4.590000e-127 464.0
18 TraesCS7D01G555200 chr7A 87.054 448 38 4 1786 2225 726720161 726719726 2.720000e-134 488.0
19 TraesCS7D01G555200 chr7A 86.304 460 39 14 1667 2104 726733788 726734245 1.640000e-131 479.0
20 TraesCS7D01G555200 chr7A 82.812 320 50 5 1104 1418 726720653 726720334 4.960000e-72 281.0
21 TraesCS7D01G555200 chr7A 84.058 207 33 0 1795 2001 5525343 5525549 1.430000e-47 200.0
22 TraesCS7D01G555200 chr2D 85.714 77 11 0 1921 1997 572030131 572030207 5.400000e-12 82.4
23 TraesCS7D01G555200 chr2A 96.875 32 1 0 2326 2357 651269336 651269305 1.000000e-03 54.7
24 TraesCS7D01G555200 chr1B 100.000 29 0 0 2326 2354 571494405 571494433 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G555200 chr7D 638657477 638659833 2356 True 4353.000000 4353 100.000000 1 2357 1 chr7D.!!$R1 2356
1 TraesCS7D01G555200 chr7D 631064351 631065544 1193 True 433.500000 464 82.753500 996 2072 2 chr7D.!!$R2 1076
2 TraesCS7D01G555200 chr7D 631270645 631272693 2048 False 376.133333 739 83.462667 927 2275 3 chr7D.!!$F2 1348
3 TraesCS7D01G555200 chr7D 631213379 631215137 1758 False 321.250000 484 88.459000 801 2277 4 chr7D.!!$F1 1476
4 TraesCS7D01G555200 chrUn 282488966 282490613 1647 False 811.000000 1003 93.537000 82 1514 2 chrUn.!!$F2 1432
5 TraesCS7D01G555200 chrUn 357066686 357068327 1641 True 811.000000 1003 93.757500 88 1514 2 chrUn.!!$R2 1426
6 TraesCS7D01G555200 chrUn 88659214 88659817 603 True 789.000000 789 90.759000 1518 2104 1 chrUn.!!$R1 586
7 TraesCS7D01G555200 chrUn 326319163 326319923 760 False 518.000000 518 80.076000 801 1542 1 chrUn.!!$F1 741
8 TraesCS7D01G555200 chrUn 357627256 357628463 1207 False 515.000000 566 86.194000 1002 2104 2 chrUn.!!$F3 1102
9 TraesCS7D01G555200 chr7A 726719726 726720653 927 True 384.500000 488 84.933000 1104 2225 2 chr7A.!!$R1 1121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 837 0.03582 TCAAGGGCACGTACCAATCC 60.036 55.0 7.23 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 3704 0.256464 ATCGGGAGAGTCGAGGAACT 59.744 55.0 0.0 0.0 45.48 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.453465 GCTATAGCGCGCTACAGC 58.547 61.111 43.99 43.99 41.06 4.40
26 27 4.944249 CTATAGCGCGCTACAGCA 57.056 55.556 40.42 23.17 42.21 4.41
27 28 2.425278 CTATAGCGCGCTACAGCAC 58.575 57.895 40.42 5.35 42.21 4.40
36 37 0.778815 CGCTACAGCACGCTAATAGC 59.221 55.000 18.16 18.16 42.21 2.97
37 38 1.852942 GCTACAGCACGCTAATAGCA 58.147 50.000 21.16 0.00 40.38 3.49
38 39 2.408050 GCTACAGCACGCTAATAGCAT 58.592 47.619 21.16 0.00 40.38 3.79
39 40 3.575630 GCTACAGCACGCTAATAGCATA 58.424 45.455 21.16 0.00 40.38 3.14
40 41 4.177026 GCTACAGCACGCTAATAGCATAT 58.823 43.478 21.16 0.00 40.38 1.78
41 42 4.627467 GCTACAGCACGCTAATAGCATATT 59.373 41.667 21.16 0.00 40.38 1.28
42 43 5.120830 GCTACAGCACGCTAATAGCATATTT 59.879 40.000 21.16 0.00 40.38 1.40
43 44 6.347725 GCTACAGCACGCTAATAGCATATTTT 60.348 38.462 21.16 0.00 40.38 1.82
44 45 5.990408 ACAGCACGCTAATAGCATATTTTC 58.010 37.500 13.15 0.00 42.58 2.29
45 46 5.527214 ACAGCACGCTAATAGCATATTTTCA 59.473 36.000 13.15 0.00 42.58 2.69
46 47 6.075918 CAGCACGCTAATAGCATATTTTCAG 58.924 40.000 13.15 0.00 42.58 3.02
47 48 5.760253 AGCACGCTAATAGCATATTTTCAGT 59.240 36.000 13.15 0.00 42.58 3.41
48 49 5.848036 GCACGCTAATAGCATATTTTCAGTG 59.152 40.000 13.15 9.41 42.58 3.66
49 50 6.365839 CACGCTAATAGCATATTTTCAGTGG 58.634 40.000 13.15 0.00 42.58 4.00
50 51 5.049405 ACGCTAATAGCATATTTTCAGTGGC 60.049 40.000 13.15 0.00 42.58 5.01
51 52 5.385617 GCTAATAGCATATTTTCAGTGGCG 58.614 41.667 7.49 0.00 41.89 5.69
52 53 5.179368 GCTAATAGCATATTTTCAGTGGCGA 59.821 40.000 7.49 0.00 41.89 5.54
53 54 5.424121 AATAGCATATTTTCAGTGGCGAC 57.576 39.130 0.00 0.00 0.00 5.19
54 55 1.665679 AGCATATTTTCAGTGGCGACG 59.334 47.619 0.00 0.00 0.00 5.12
55 56 1.856014 GCATATTTTCAGTGGCGACGC 60.856 52.381 12.43 12.43 42.66 5.19
143 144 6.105657 TGTCATGCATTAAGTACATGTTCG 57.894 37.500 2.30 0.00 41.51 3.95
163 164 6.913673 TGTTCGGAGTGTATTTAAAAACTTGC 59.086 34.615 0.00 0.00 0.00 4.01
166 167 5.788531 CGGAGTGTATTTAAAAACTTGCTCG 59.211 40.000 0.00 0.00 0.00 5.03
181 182 5.270853 ACTTGCTCGTCATGTGTTAAAAAC 58.729 37.500 0.00 0.00 32.55 2.43
231 232 9.785982 TTGAAATTTTTATTTCCCCAAAGTAGG 57.214 29.630 7.84 0.00 39.21 3.18
232 233 8.939932 TGAAATTTTTATTTCCCCAAAGTAGGT 58.060 29.630 7.84 0.00 39.21 3.08
340 342 0.817634 CCAAAGACACCCGTTGCAGA 60.818 55.000 0.00 0.00 33.72 4.26
458 460 3.362831 CGTGTGTTAGACCGTTCATGTAC 59.637 47.826 0.00 0.00 0.00 2.90
493 495 5.508200 AAAAACGTTCATTTACAGGCAGA 57.492 34.783 0.00 0.00 0.00 4.26
494 496 4.749245 AAACGTTCATTTACAGGCAGAG 57.251 40.909 0.00 0.00 0.00 3.35
495 497 3.678056 ACGTTCATTTACAGGCAGAGA 57.322 42.857 0.00 0.00 0.00 3.10
496 498 3.589988 ACGTTCATTTACAGGCAGAGAG 58.410 45.455 0.00 0.00 0.00 3.20
497 499 3.258372 ACGTTCATTTACAGGCAGAGAGA 59.742 43.478 0.00 0.00 0.00 3.10
498 500 3.862267 CGTTCATTTACAGGCAGAGAGAG 59.138 47.826 0.00 0.00 0.00 3.20
500 502 4.998671 TCATTTACAGGCAGAGAGAGAG 57.001 45.455 0.00 0.00 0.00 3.20
501 503 4.604156 TCATTTACAGGCAGAGAGAGAGA 58.396 43.478 0.00 0.00 0.00 3.10
502 504 4.644234 TCATTTACAGGCAGAGAGAGAGAG 59.356 45.833 0.00 0.00 0.00 3.20
503 505 4.308526 TTTACAGGCAGAGAGAGAGAGA 57.691 45.455 0.00 0.00 0.00 3.10
504 506 2.425143 ACAGGCAGAGAGAGAGAGAG 57.575 55.000 0.00 0.00 0.00 3.20
506 508 2.092753 ACAGGCAGAGAGAGAGAGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
507 509 2.171237 CAGGCAGAGAGAGAGAGAGAGA 59.829 54.545 0.00 0.00 0.00 3.10
508 510 2.437281 AGGCAGAGAGAGAGAGAGAGAG 59.563 54.545 0.00 0.00 0.00 3.20
510 512 3.494048 GGCAGAGAGAGAGAGAGAGAGAG 60.494 56.522 0.00 0.00 0.00 3.20
511 513 3.386078 GCAGAGAGAGAGAGAGAGAGAGA 59.614 52.174 0.00 0.00 0.00 3.10
512 514 4.739137 GCAGAGAGAGAGAGAGAGAGAGAC 60.739 54.167 0.00 0.00 0.00 3.36
515 517 3.381908 AGAGAGAGAGAGAGAGAGACGTC 59.618 52.174 7.70 7.70 0.00 4.34
516 518 2.431057 AGAGAGAGAGAGAGAGACGTCC 59.569 54.545 13.01 3.77 0.00 4.79
517 519 2.167693 GAGAGAGAGAGAGAGACGTCCA 59.832 54.545 13.01 0.00 0.00 4.02
518 520 2.771943 AGAGAGAGAGAGAGACGTCCAT 59.228 50.000 13.01 0.00 0.00 3.41
520 522 3.945285 GAGAGAGAGAGAGACGTCCATTT 59.055 47.826 13.01 0.00 0.00 2.32
522 524 4.398044 AGAGAGAGAGAGACGTCCATTTTC 59.602 45.833 13.01 2.44 0.00 2.29
523 525 4.340617 AGAGAGAGAGACGTCCATTTTCT 58.659 43.478 13.01 8.04 0.00 2.52
524 526 5.502079 AGAGAGAGAGACGTCCATTTTCTA 58.498 41.667 13.01 0.00 0.00 2.10
525 527 5.946972 AGAGAGAGAGACGTCCATTTTCTAA 59.053 40.000 13.01 0.00 0.00 2.10
526 528 6.434652 AGAGAGAGAGACGTCCATTTTCTAAA 59.565 38.462 13.01 0.00 0.00 1.85
527 529 6.391537 AGAGAGAGACGTCCATTTTCTAAAC 58.608 40.000 13.01 3.62 0.00 2.01
528 530 5.480205 AGAGAGACGTCCATTTTCTAAACC 58.520 41.667 13.01 0.00 0.00 3.27
529 531 4.243270 AGAGACGTCCATTTTCTAAACCG 58.757 43.478 13.01 0.00 0.00 4.44
530 532 3.332034 AGACGTCCATTTTCTAAACCGG 58.668 45.455 13.01 0.00 0.00 5.28
531 533 1.808343 ACGTCCATTTTCTAAACCGGC 59.192 47.619 0.00 0.00 0.00 6.13
532 534 1.201987 CGTCCATTTTCTAAACCGGCG 60.202 52.381 0.00 0.00 0.00 6.46
533 535 2.078392 GTCCATTTTCTAAACCGGCGA 58.922 47.619 9.30 0.00 0.00 5.54
534 536 2.485038 GTCCATTTTCTAAACCGGCGAA 59.515 45.455 9.30 0.00 0.00 4.70
535 537 3.128068 GTCCATTTTCTAAACCGGCGAAT 59.872 43.478 9.30 0.00 0.00 3.34
536 538 3.375922 TCCATTTTCTAAACCGGCGAATC 59.624 43.478 9.30 0.00 0.00 2.52
537 539 3.350912 CATTTTCTAAACCGGCGAATCG 58.649 45.455 9.30 0.00 0.00 3.34
538 540 2.083167 TTTCTAAACCGGCGAATCGT 57.917 45.000 9.30 0.00 0.00 3.73
539 541 1.632422 TTCTAAACCGGCGAATCGTC 58.368 50.000 9.30 0.00 0.00 4.20
540 542 0.527113 TCTAAACCGGCGAATCGTCA 59.473 50.000 9.30 0.00 0.00 4.35
541 543 1.135527 TCTAAACCGGCGAATCGTCAT 59.864 47.619 9.30 0.00 0.00 3.06
542 544 2.358582 TCTAAACCGGCGAATCGTCATA 59.641 45.455 9.30 0.00 0.00 2.15
543 545 2.234300 AAACCGGCGAATCGTCATAT 57.766 45.000 9.30 0.00 0.00 1.78
545 547 0.387929 ACCGGCGAATCGTCATATGT 59.612 50.000 9.30 0.00 0.00 2.29
546 548 0.784178 CCGGCGAATCGTCATATGTG 59.216 55.000 9.30 0.00 0.00 3.21
547 549 1.487482 CGGCGAATCGTCATATGTGT 58.513 50.000 8.30 0.00 0.00 3.72
548 550 1.858458 CGGCGAATCGTCATATGTGTT 59.142 47.619 8.30 0.00 0.00 3.32
549 551 2.347568 CGGCGAATCGTCATATGTGTTG 60.348 50.000 8.30 0.00 0.00 3.33
550 552 2.032894 GGCGAATCGTCATATGTGTTGG 60.033 50.000 1.02 0.00 0.00 3.77
551 553 2.863740 GCGAATCGTCATATGTGTTGGA 59.136 45.455 4.07 0.00 0.00 3.53
552 554 3.060272 GCGAATCGTCATATGTGTTGGAG 60.060 47.826 4.07 0.00 0.00 3.86
553 555 3.060272 CGAATCGTCATATGTGTTGGAGC 60.060 47.826 1.90 0.00 0.00 4.70
557 559 2.670905 CGTCATATGTGTTGGAGCGAAA 59.329 45.455 1.90 0.00 0.00 3.46
558 560 3.124466 CGTCATATGTGTTGGAGCGAAAA 59.876 43.478 1.90 0.00 0.00 2.29
559 561 4.651994 GTCATATGTGTTGGAGCGAAAAG 58.348 43.478 1.90 0.00 0.00 2.27
560 562 4.391830 GTCATATGTGTTGGAGCGAAAAGA 59.608 41.667 1.90 0.00 0.00 2.52
561 563 5.000591 TCATATGTGTTGGAGCGAAAAGAA 58.999 37.500 1.90 0.00 0.00 2.52
562 564 3.904136 ATGTGTTGGAGCGAAAAGAAG 57.096 42.857 0.00 0.00 0.00 2.85
563 565 1.333619 TGTGTTGGAGCGAAAAGAAGC 59.666 47.619 0.00 0.00 0.00 3.86
565 567 1.603802 TGTTGGAGCGAAAAGAAGCAG 59.396 47.619 0.00 0.00 35.48 4.24
566 568 1.873591 GTTGGAGCGAAAAGAAGCAGA 59.126 47.619 0.00 0.00 35.48 4.26
567 569 2.254546 TGGAGCGAAAAGAAGCAGAA 57.745 45.000 0.00 0.00 35.48 3.02
568 570 2.571212 TGGAGCGAAAAGAAGCAGAAA 58.429 42.857 0.00 0.00 35.48 2.52
569 571 2.549754 TGGAGCGAAAAGAAGCAGAAAG 59.450 45.455 0.00 0.00 35.48 2.62
570 572 2.095516 GGAGCGAAAAGAAGCAGAAAGG 60.096 50.000 0.00 0.00 35.48 3.11
571 573 2.808543 GAGCGAAAAGAAGCAGAAAGGA 59.191 45.455 0.00 0.00 35.48 3.36
572 574 2.810852 AGCGAAAAGAAGCAGAAAGGAG 59.189 45.455 0.00 0.00 35.48 3.69
573 575 2.666895 GCGAAAAGAAGCAGAAAGGAGC 60.667 50.000 0.00 0.00 0.00 4.70
574 576 2.549754 CGAAAAGAAGCAGAAAGGAGCA 59.450 45.455 0.00 0.00 0.00 4.26
576 578 1.532523 AAGAAGCAGAAAGGAGCAGC 58.467 50.000 0.00 0.00 0.00 5.25
579 680 1.787462 AAGCAGAAAGGAGCAGCCCT 61.787 55.000 0.00 0.00 38.42 5.19
612 713 4.893601 GCGGGCGGACTAGGCTTC 62.894 72.222 0.00 0.00 36.85 3.86
613 714 4.570663 CGGGCGGACTAGGCTTCG 62.571 72.222 0.00 0.00 36.85 3.79
616 717 2.572284 GCGGACTAGGCTTCGTGT 59.428 61.111 0.00 0.00 0.00 4.49
617 718 1.080025 GCGGACTAGGCTTCGTGTT 60.080 57.895 0.00 0.00 0.00 3.32
618 719 1.077089 GCGGACTAGGCTTCGTGTTC 61.077 60.000 0.00 0.00 0.00 3.18
619 720 0.797249 CGGACTAGGCTTCGTGTTCG 60.797 60.000 0.00 0.00 38.55 3.95
621 722 1.337821 GACTAGGCTTCGTGTTCGTG 58.662 55.000 0.00 0.00 38.33 4.35
622 723 0.672342 ACTAGGCTTCGTGTTCGTGT 59.328 50.000 0.00 0.00 38.33 4.49
623 724 1.068127 ACTAGGCTTCGTGTTCGTGTT 59.932 47.619 0.00 0.00 38.33 3.32
624 725 1.455786 CTAGGCTTCGTGTTCGTGTTG 59.544 52.381 0.00 0.00 38.33 3.33
625 726 1.157870 AGGCTTCGTGTTCGTGTTGG 61.158 55.000 0.00 0.00 38.33 3.77
626 727 1.433837 GGCTTCGTGTTCGTGTTGGT 61.434 55.000 0.00 0.00 38.33 3.67
627 728 1.210870 GCTTCGTGTTCGTGTTGGTA 58.789 50.000 0.00 0.00 38.33 3.25
628 729 1.796459 GCTTCGTGTTCGTGTTGGTAT 59.204 47.619 0.00 0.00 38.33 2.73
629 730 2.222445 GCTTCGTGTTCGTGTTGGTATT 59.778 45.455 0.00 0.00 38.33 1.89
630 731 3.663493 GCTTCGTGTTCGTGTTGGTATTC 60.663 47.826 0.00 0.00 38.33 1.75
632 733 2.036217 TCGTGTTCGTGTTGGTATTCCT 59.964 45.455 0.00 0.00 38.33 3.36
633 734 2.410730 CGTGTTCGTGTTGGTATTCCTC 59.589 50.000 0.00 0.00 34.23 3.71
634 735 3.660865 GTGTTCGTGTTGGTATTCCTCT 58.339 45.455 0.00 0.00 34.23 3.69
635 736 4.062991 GTGTTCGTGTTGGTATTCCTCTT 58.937 43.478 0.00 0.00 34.23 2.85
636 737 4.514066 GTGTTCGTGTTGGTATTCCTCTTT 59.486 41.667 0.00 0.00 34.23 2.52
637 738 4.753107 TGTTCGTGTTGGTATTCCTCTTTC 59.247 41.667 0.00 0.00 34.23 2.62
638 739 3.581755 TCGTGTTGGTATTCCTCTTTCG 58.418 45.455 0.00 0.00 34.23 3.46
639 740 3.006110 TCGTGTTGGTATTCCTCTTTCGT 59.994 43.478 0.00 0.00 34.23 3.85
640 741 3.122948 CGTGTTGGTATTCCTCTTTCGTG 59.877 47.826 0.00 0.00 34.23 4.35
641 742 4.062991 GTGTTGGTATTCCTCTTTCGTGT 58.937 43.478 0.00 0.00 34.23 4.49
642 743 4.151867 GTGTTGGTATTCCTCTTTCGTGTC 59.848 45.833 0.00 0.00 34.23 3.67
644 745 2.559668 TGGTATTCCTCTTTCGTGTCGT 59.440 45.455 0.00 0.00 34.23 4.34
645 746 3.177487 GGTATTCCTCTTTCGTGTCGTC 58.823 50.000 0.00 0.00 0.00 4.20
646 747 3.119566 GGTATTCCTCTTTCGTGTCGTCT 60.120 47.826 0.00 0.00 0.00 4.18
648 749 4.985538 ATTCCTCTTTCGTGTCGTCTAT 57.014 40.909 0.00 0.00 0.00 1.98
649 750 3.759527 TCCTCTTTCGTGTCGTCTATG 57.240 47.619 0.00 0.00 0.00 2.23
654 755 3.978855 TCTTTCGTGTCGTCTATGTGTTG 59.021 43.478 0.00 0.00 0.00 3.33
655 756 2.341318 TCGTGTCGTCTATGTGTTGG 57.659 50.000 0.00 0.00 0.00 3.77
657 758 1.668919 CGTGTCGTCTATGTGTTGGCT 60.669 52.381 0.00 0.00 0.00 4.75
658 759 2.414957 CGTGTCGTCTATGTGTTGGCTA 60.415 50.000 0.00 0.00 0.00 3.93
659 760 2.921754 GTGTCGTCTATGTGTTGGCTAC 59.078 50.000 0.00 0.00 0.00 3.58
660 761 2.094390 TGTCGTCTATGTGTTGGCTACC 60.094 50.000 0.00 0.00 0.00 3.18
662 763 3.379372 GTCGTCTATGTGTTGGCTACCTA 59.621 47.826 0.00 0.00 0.00 3.08
664 765 3.490419 CGTCTATGTGTTGGCTACCTACC 60.490 52.174 0.00 0.00 0.00 3.18
665 766 3.705072 GTCTATGTGTTGGCTACCTACCT 59.295 47.826 0.00 0.00 0.00 3.08
666 767 4.891756 GTCTATGTGTTGGCTACCTACCTA 59.108 45.833 0.00 0.00 0.00 3.08
669 770 1.829222 GTGTTGGCTACCTACCTAGCA 59.171 52.381 0.00 0.00 40.96 3.49
670 771 1.829222 TGTTGGCTACCTACCTAGCAC 59.171 52.381 0.00 0.00 40.96 4.40
671 772 1.829222 GTTGGCTACCTACCTAGCACA 59.171 52.381 0.93 0.00 40.96 4.57
672 773 2.434702 GTTGGCTACCTACCTAGCACAT 59.565 50.000 0.93 0.00 40.96 3.21
674 775 3.228453 TGGCTACCTACCTAGCACATAC 58.772 50.000 0.93 0.00 40.96 2.39
677 778 4.067896 GCTACCTACCTAGCACATACGTA 58.932 47.826 0.00 0.00 39.26 3.57
678 779 4.083590 GCTACCTACCTAGCACATACGTAC 60.084 50.000 0.00 0.00 39.26 3.67
679 780 3.889815 ACCTACCTAGCACATACGTACA 58.110 45.455 0.00 0.00 0.00 2.90
680 781 3.881688 ACCTACCTAGCACATACGTACAG 59.118 47.826 0.00 0.00 0.00 2.74
682 783 5.059161 CCTACCTAGCACATACGTACAGTA 58.941 45.833 0.00 0.00 40.03 2.74
684 785 4.521146 ACCTAGCACATACGTACAGTACT 58.479 43.478 9.10 2.72 38.29 2.73
686 787 5.525378 ACCTAGCACATACGTACAGTACTAC 59.475 44.000 9.10 0.00 38.29 2.73
690 791 4.497006 GCACATACGTACAGTACTACCCAG 60.497 50.000 9.10 0.00 38.29 4.45
691 792 4.877823 CACATACGTACAGTACTACCCAGA 59.122 45.833 9.10 0.00 38.29 3.86
692 793 5.530171 CACATACGTACAGTACTACCCAGAT 59.470 44.000 9.10 0.00 38.29 2.90
693 794 5.530171 ACATACGTACAGTACTACCCAGATG 59.470 44.000 9.10 0.00 38.29 2.90
694 795 2.686915 ACGTACAGTACTACCCAGATGC 59.313 50.000 9.10 0.00 0.00 3.91
696 797 3.318275 CGTACAGTACTACCCAGATGCAT 59.682 47.826 0.00 0.00 0.00 3.96
697 798 3.827008 ACAGTACTACCCAGATGCATG 57.173 47.619 2.46 0.00 0.00 4.06
698 799 2.158900 ACAGTACTACCCAGATGCATGC 60.159 50.000 11.82 11.82 0.00 4.06
699 800 2.103771 CAGTACTACCCAGATGCATGCT 59.896 50.000 20.33 4.11 0.00 3.79
700 801 3.321968 CAGTACTACCCAGATGCATGCTA 59.678 47.826 20.33 5.73 0.00 3.49
701 802 3.576118 AGTACTACCCAGATGCATGCTAG 59.424 47.826 20.33 12.33 0.00 3.42
702 803 2.402564 ACTACCCAGATGCATGCTAGT 58.597 47.619 20.33 12.99 0.00 2.57
705 806 1.224075 CCCAGATGCATGCTAGTTCG 58.776 55.000 20.33 2.45 0.00 3.95
706 807 1.224075 CCAGATGCATGCTAGTTCGG 58.776 55.000 20.33 10.70 0.00 4.30
707 808 1.224075 CAGATGCATGCTAGTTCGGG 58.776 55.000 20.33 5.32 0.00 5.14
708 809 0.833287 AGATGCATGCTAGTTCGGGT 59.167 50.000 20.33 0.00 0.00 5.28
709 810 1.210478 AGATGCATGCTAGTTCGGGTT 59.790 47.619 20.33 0.00 0.00 4.11
711 812 0.392461 TGCATGCTAGTTCGGGTTCC 60.392 55.000 20.33 0.00 0.00 3.62
714 815 0.831307 ATGCTAGTTCGGGTTCCTCC 59.169 55.000 0.00 0.00 0.00 4.30
721 822 2.264794 CGGGTTCCTCCGGTCAAG 59.735 66.667 0.00 0.00 45.78 3.02
722 823 2.669240 GGGTTCCTCCGGTCAAGG 59.331 66.667 0.00 0.13 37.00 3.61
723 824 2.669240 GGTTCCTCCGGTCAAGGG 59.331 66.667 7.78 1.54 34.46 3.95
724 825 2.046217 GTTCCTCCGGTCAAGGGC 60.046 66.667 7.78 0.00 34.46 5.19
726 827 2.890766 TTCCTCCGGTCAAGGGCAC 61.891 63.158 7.78 0.00 34.46 5.01
727 828 4.760047 CCTCCGGTCAAGGGCACG 62.760 72.222 0.00 0.00 0.00 5.34
728 829 4.003788 CTCCGGTCAAGGGCACGT 62.004 66.667 0.00 0.00 0.00 4.49
729 830 2.601067 TCCGGTCAAGGGCACGTA 60.601 61.111 0.00 0.00 0.00 3.57
731 832 2.433664 CGGTCAAGGGCACGTACC 60.434 66.667 0.00 0.00 0.00 3.34
732 833 2.745037 GGTCAAGGGCACGTACCA 59.255 61.111 7.23 0.00 0.00 3.25
733 834 1.071814 GGTCAAGGGCACGTACCAA 59.928 57.895 7.23 0.00 0.00 3.67
734 835 0.322187 GGTCAAGGGCACGTACCAAT 60.322 55.000 7.23 0.00 0.00 3.16
735 836 1.084289 GTCAAGGGCACGTACCAATC 58.916 55.000 7.23 0.00 0.00 2.67
736 837 0.035820 TCAAGGGCACGTACCAATCC 60.036 55.000 7.23 0.00 0.00 3.01
738 839 1.615424 AGGGCACGTACCAATCCCT 60.615 57.895 7.23 4.67 42.25 4.20
740 841 0.179065 GGGCACGTACCAATCCCTAC 60.179 60.000 7.23 0.00 34.19 3.18
741 842 0.179065 GGCACGTACCAATCCCTACC 60.179 60.000 0.00 0.00 0.00 3.18
743 844 0.103572 CACGTACCAATCCCTACCGG 59.896 60.000 0.00 0.00 0.00 5.28
745 846 0.672342 CGTACCAATCCCTACCGGAG 59.328 60.000 9.46 0.28 46.60 4.63
746 847 1.751733 CGTACCAATCCCTACCGGAGA 60.752 57.143 9.46 0.00 46.60 3.71
747 848 2.391678 GTACCAATCCCTACCGGAGAA 58.608 52.381 9.46 0.00 46.60 2.87
748 849 1.201424 ACCAATCCCTACCGGAGAAC 58.799 55.000 9.46 0.00 46.60 3.01
749 850 1.273666 ACCAATCCCTACCGGAGAACT 60.274 52.381 9.46 0.00 46.60 3.01
750 851 2.023695 ACCAATCCCTACCGGAGAACTA 60.024 50.000 9.46 0.00 46.60 2.24
751 852 2.364647 CCAATCCCTACCGGAGAACTAC 59.635 54.545 9.46 0.00 46.60 2.73
753 854 1.002069 TCCCTACCGGAGAACTACCA 58.998 55.000 9.46 0.00 34.86 3.25
754 855 1.358787 TCCCTACCGGAGAACTACCAA 59.641 52.381 9.46 0.00 34.86 3.67
755 856 2.023695 TCCCTACCGGAGAACTACCAAT 60.024 50.000 9.46 0.00 34.86 3.16
756 857 2.364647 CCCTACCGGAGAACTACCAATC 59.635 54.545 9.46 0.00 0.00 2.67
757 858 2.364647 CCTACCGGAGAACTACCAATCC 59.635 54.545 9.46 0.00 0.00 3.01
759 860 1.273666 ACCGGAGAACTACCAATCCCT 60.274 52.381 9.46 0.00 0.00 4.20
760 861 1.413077 CCGGAGAACTACCAATCCCTC 59.587 57.143 0.00 0.00 0.00 4.30
763 864 2.629909 GGAGAACTACCAATCCCTCCCT 60.630 54.545 0.00 0.00 35.39 4.20
765 866 3.898741 GAGAACTACCAATCCCTCCCTAG 59.101 52.174 0.00 0.00 0.00 3.02
766 867 3.536434 AGAACTACCAATCCCTCCCTAGA 59.464 47.826 0.00 0.00 0.00 2.43
767 868 4.173043 AGAACTACCAATCCCTCCCTAGAT 59.827 45.833 0.00 0.00 0.00 1.98
769 870 2.016905 ACCAATCCCTCCCTAGATCG 57.983 55.000 0.00 0.00 0.00 3.69
771 872 1.270907 CAATCCCTCCCTAGATCGGG 58.729 60.000 0.00 0.00 46.13 5.14
775 876 0.540830 CCCTCCCTAGATCGGGTCTG 60.541 65.000 0.00 0.00 44.95 3.51
776 877 0.186386 CCTCCCTAGATCGGGTCTGT 59.814 60.000 0.00 0.00 44.95 3.41
778 879 2.158505 CCTCCCTAGATCGGGTCTGTTA 60.159 54.545 0.00 0.00 44.95 2.41
779 880 2.885894 CTCCCTAGATCGGGTCTGTTAC 59.114 54.545 0.00 0.00 44.95 2.50
780 881 1.607628 CCCTAGATCGGGTCTGTTACG 59.392 57.143 0.00 0.00 39.51 3.18
781 882 1.607628 CCTAGATCGGGTCTGTTACGG 59.392 57.143 0.00 0.00 37.83 4.02
782 883 2.295885 CTAGATCGGGTCTGTTACGGT 58.704 52.381 0.00 0.00 37.83 4.83
783 884 1.101331 AGATCGGGTCTGTTACGGTC 58.899 55.000 0.00 0.00 37.98 4.79
784 885 0.101939 GATCGGGTCTGTTACGGTCC 59.898 60.000 0.00 0.00 31.95 4.46
785 886 1.660560 ATCGGGTCTGTTACGGTCCG 61.661 60.000 10.48 10.48 38.92 4.79
787 888 1.978617 GGGTCTGTTACGGTCCGGA 60.979 63.158 17.28 3.30 0.00 5.14
788 889 1.535204 GGGTCTGTTACGGTCCGGAA 61.535 60.000 17.28 11.30 0.00 4.30
789 890 0.533951 GGTCTGTTACGGTCCGGAAT 59.466 55.000 13.20 0.00 30.39 3.01
791 892 2.166254 GGTCTGTTACGGTCCGGAATAA 59.834 50.000 13.20 3.24 30.39 1.40
793 894 2.824936 TCTGTTACGGTCCGGAATAACA 59.175 45.455 24.74 24.74 36.40 2.41
796 897 2.867975 GTTACGGTCCGGAATAACATGG 59.132 50.000 13.20 4.45 30.39 3.66
799 900 1.411246 CGGTCCGGAATAACATGGAGA 59.589 52.381 5.23 0.00 0.00 3.71
883 1122 6.991485 TTTACGTACGTCTTTTGTCCTAAG 57.009 37.500 26.53 0.00 0.00 2.18
884 1123 3.311966 ACGTACGTCTTTTGTCCTAAGC 58.688 45.455 16.72 0.00 0.00 3.09
885 1124 3.243501 ACGTACGTCTTTTGTCCTAAGCA 60.244 43.478 16.72 0.00 0.00 3.91
886 1125 3.924686 CGTACGTCTTTTGTCCTAAGCAT 59.075 43.478 7.22 0.00 0.00 3.79
887 1126 4.201589 CGTACGTCTTTTGTCCTAAGCATG 60.202 45.833 7.22 0.00 0.00 4.06
888 1127 3.740115 ACGTCTTTTGTCCTAAGCATGT 58.260 40.909 0.00 0.00 0.00 3.21
889 1128 3.746492 ACGTCTTTTGTCCTAAGCATGTC 59.254 43.478 0.00 0.00 0.00 3.06
900 1144 2.442236 AAGCATGTCAATTCCCGGAT 57.558 45.000 0.73 0.00 0.00 4.18
901 1145 1.972872 AGCATGTCAATTCCCGGATC 58.027 50.000 0.73 0.00 0.00 3.36
902 1146 1.212688 AGCATGTCAATTCCCGGATCA 59.787 47.619 0.73 0.00 0.00 2.92
903 1147 2.158564 AGCATGTCAATTCCCGGATCAT 60.159 45.455 0.73 0.00 0.00 2.45
904 1148 2.227388 GCATGTCAATTCCCGGATCATC 59.773 50.000 0.73 0.00 0.00 2.92
905 1149 2.238942 TGTCAATTCCCGGATCATCG 57.761 50.000 0.73 0.00 0.00 3.84
907 1151 2.093181 TGTCAATTCCCGGATCATCGTT 60.093 45.455 0.73 0.00 0.00 3.85
908 1152 2.287915 GTCAATTCCCGGATCATCGTTG 59.712 50.000 0.73 0.00 0.00 4.10
909 1153 1.002468 CAATTCCCGGATCATCGTTGC 60.002 52.381 0.73 0.00 0.00 4.17
910 1154 0.469917 ATTCCCGGATCATCGTTGCT 59.530 50.000 0.73 0.00 0.00 3.91
915 1207 1.468520 CCGGATCATCGTTGCTTTTGT 59.531 47.619 0.00 0.00 0.00 2.83
1134 1456 1.528776 GCTCGTCTATCGGGGTCCT 60.529 63.158 0.00 0.00 40.86 3.85
1347 1669 0.872388 GAGGTTTTGCGTCCGTCATT 59.128 50.000 0.00 0.00 0.00 2.57
1637 2869 4.061596 GTCTTTATATGTGGAGCTGAGCC 58.938 47.826 0.00 0.00 0.00 4.70
1784 3033 1.109920 TAGCGCAGTCCATCCTCTCC 61.110 60.000 11.47 0.00 0.00 3.71
1948 3229 1.136110 GAGCTCAAGGAGGTGCTCTAC 59.864 57.143 9.40 0.00 45.78 2.59
2026 3324 4.286297 TGCTTACCACTTGCAGATTACT 57.714 40.909 0.00 0.00 32.55 2.24
2027 3325 4.651778 TGCTTACCACTTGCAGATTACTT 58.348 39.130 0.00 0.00 32.55 2.24
2028 3326 4.695455 TGCTTACCACTTGCAGATTACTTC 59.305 41.667 0.00 0.00 32.55 3.01
2029 3327 4.695455 GCTTACCACTTGCAGATTACTTCA 59.305 41.667 0.00 0.00 0.00 3.02
2030 3328 5.163814 GCTTACCACTTGCAGATTACTTCAG 60.164 44.000 0.00 0.00 0.00 3.02
2031 3329 4.357918 ACCACTTGCAGATTACTTCAGT 57.642 40.909 0.00 0.00 0.00 3.41
2032 3330 4.718961 ACCACTTGCAGATTACTTCAGTT 58.281 39.130 0.00 0.00 0.00 3.16
2104 3402 0.682852 CCGTTCTTCAGGTGGTGGTA 59.317 55.000 0.00 0.00 0.00 3.25
2149 3557 1.082117 CGCTCCATGTACGGTGGAAC 61.082 60.000 17.46 13.36 44.69 3.62
2156 3564 5.202765 TCCATGTACGGTGGAACTAGAATA 58.797 41.667 15.26 0.00 42.56 1.75
2163 3571 4.461781 ACGGTGGAACTAGAATATATCCGG 59.538 45.833 0.00 0.00 38.74 5.14
2176 3584 0.750850 TATCCGGCCTTCCTTCTTCG 59.249 55.000 0.00 0.00 0.00 3.79
2183 3591 2.105766 GCCTTCCTTCTTCGGGTAGTA 58.894 52.381 0.00 0.00 0.00 1.82
2193 3601 5.886960 TCTTCGGGTAGTAGTGTAGAAAC 57.113 43.478 0.00 0.00 0.00 2.78
2222 3630 1.468520 CCGATGCCGTTGTGAAATCTT 59.531 47.619 0.00 0.00 0.00 2.40
2231 3639 5.163903 GCCGTTGTGAAATCTTGTTTTGTTT 60.164 36.000 0.00 0.00 0.00 2.83
2232 3640 6.239945 CCGTTGTGAAATCTTGTTTTGTTTG 58.760 36.000 0.00 0.00 0.00 2.93
2277 3685 7.492020 TGAGTTACTAGCGTTTTGTTGAAACTA 59.508 33.333 0.00 0.00 44.37 2.24
2278 3686 8.374327 AGTTACTAGCGTTTTGTTGAAACTAT 57.626 30.769 0.00 0.00 44.37 2.12
2279 3687 8.280497 AGTTACTAGCGTTTTGTTGAAACTATG 58.720 33.333 0.00 0.00 44.37 2.23
2280 3688 5.997385 ACTAGCGTTTTGTTGAAACTATGG 58.003 37.500 0.00 0.00 44.37 2.74
2281 3689 4.237349 AGCGTTTTGTTGAAACTATGGG 57.763 40.909 0.88 0.00 44.37 4.00
2282 3690 3.886505 AGCGTTTTGTTGAAACTATGGGA 59.113 39.130 0.88 0.00 44.37 4.37
2283 3691 4.339814 AGCGTTTTGTTGAAACTATGGGAA 59.660 37.500 0.88 0.00 44.37 3.97
2284 3692 5.044558 GCGTTTTGTTGAAACTATGGGAAA 58.955 37.500 0.88 0.00 44.37 3.13
2285 3693 5.520649 GCGTTTTGTTGAAACTATGGGAAAA 59.479 36.000 0.88 0.00 44.37 2.29
2286 3694 6.292114 GCGTTTTGTTGAAACTATGGGAAAAG 60.292 38.462 0.88 0.00 44.37 2.27
2287 3695 6.754675 CGTTTTGTTGAAACTATGGGAAAAGT 59.245 34.615 0.88 0.00 44.37 2.66
2288 3696 7.276878 CGTTTTGTTGAAACTATGGGAAAAGTT 59.723 33.333 0.88 0.00 44.37 2.66
2289 3697 8.941977 GTTTTGTTGAAACTATGGGAAAAGTTT 58.058 29.630 0.36 0.36 45.99 2.66
2290 3698 9.508642 TTTTGTTGAAACTATGGGAAAAGTTTT 57.491 25.926 0.00 0.00 43.97 2.43
2291 3699 9.508642 TTTGTTGAAACTATGGGAAAAGTTTTT 57.491 25.926 1.64 0.00 43.97 1.94
2312 3720 4.532314 TTTTTAGTTCCTCGACTCTCCC 57.468 45.455 0.00 0.00 0.00 4.30
2313 3721 1.747709 TTAGTTCCTCGACTCTCCCG 58.252 55.000 0.00 0.00 0.00 5.14
2314 3722 0.907486 TAGTTCCTCGACTCTCCCGA 59.093 55.000 0.00 0.00 34.61 5.14
2315 3723 0.256464 AGTTCCTCGACTCTCCCGAT 59.744 55.000 0.00 0.00 35.35 4.18
2316 3724 1.489649 AGTTCCTCGACTCTCCCGATA 59.510 52.381 0.00 0.00 35.35 2.92
2317 3725 2.092538 AGTTCCTCGACTCTCCCGATAA 60.093 50.000 0.00 0.00 35.35 1.75
2318 3726 2.686915 GTTCCTCGACTCTCCCGATAAA 59.313 50.000 0.00 0.00 35.35 1.40
2319 3727 3.225177 TCCTCGACTCTCCCGATAAAT 57.775 47.619 0.00 0.00 35.35 1.40
2320 3728 3.147629 TCCTCGACTCTCCCGATAAATC 58.852 50.000 0.00 0.00 35.35 2.17
2321 3729 2.885266 CCTCGACTCTCCCGATAAATCA 59.115 50.000 0.00 0.00 35.35 2.57
2322 3730 3.318275 CCTCGACTCTCCCGATAAATCAA 59.682 47.826 0.00 0.00 35.35 2.57
2323 3731 4.021894 CCTCGACTCTCCCGATAAATCAAT 60.022 45.833 0.00 0.00 35.35 2.57
2324 3732 5.183331 CCTCGACTCTCCCGATAAATCAATA 59.817 44.000 0.00 0.00 35.35 1.90
2325 3733 6.127591 CCTCGACTCTCCCGATAAATCAATAT 60.128 42.308 0.00 0.00 35.35 1.28
2326 3734 7.228314 TCGACTCTCCCGATAAATCAATATT 57.772 36.000 0.00 0.00 0.00 1.28
2327 3735 7.090808 TCGACTCTCCCGATAAATCAATATTG 58.909 38.462 9.29 9.29 0.00 1.90
2328 3736 6.868864 CGACTCTCCCGATAAATCAATATTGT 59.131 38.462 14.97 0.00 0.00 2.71
2329 3737 8.027189 CGACTCTCCCGATAAATCAATATTGTA 58.973 37.037 14.97 1.32 0.00 2.41
2330 3738 9.360093 GACTCTCCCGATAAATCAATATTGTAG 57.640 37.037 14.97 0.00 0.00 2.74
2331 3739 8.871125 ACTCTCCCGATAAATCAATATTGTAGT 58.129 33.333 14.97 4.42 0.00 2.73
2332 3740 9.360093 CTCTCCCGATAAATCAATATTGTAGTC 57.640 37.037 14.97 7.05 0.00 2.59
2333 3741 8.027189 TCTCCCGATAAATCAATATTGTAGTCG 58.973 37.037 14.97 16.00 0.00 4.18
2334 3742 7.663827 TCCCGATAAATCAATATTGTAGTCGT 58.336 34.615 14.97 0.00 0.00 4.34
2335 3743 7.811236 TCCCGATAAATCAATATTGTAGTCGTC 59.189 37.037 14.97 7.21 0.00 4.20
2336 3744 7.201325 CCCGATAAATCAATATTGTAGTCGTCG 60.201 40.741 14.97 16.16 0.00 5.12
2337 3745 7.158346 CGATAAATCAATATTGTAGTCGTCGC 58.842 38.462 14.97 0.00 0.00 5.19
2338 3746 7.060748 CGATAAATCAATATTGTAGTCGTCGCT 59.939 37.037 14.97 0.00 0.00 4.93
2339 3747 9.338291 GATAAATCAATATTGTAGTCGTCGCTA 57.662 33.333 14.97 0.00 0.00 4.26
2340 3748 7.624706 AAATCAATATTGTAGTCGTCGCTAG 57.375 36.000 14.97 0.00 0.00 3.42
2341 3749 5.996669 TCAATATTGTAGTCGTCGCTAGA 57.003 39.130 14.97 0.00 0.00 2.43
2342 3750 6.555812 TCAATATTGTAGTCGTCGCTAGAT 57.444 37.500 14.97 0.00 0.00 1.98
2343 3751 6.371389 TCAATATTGTAGTCGTCGCTAGATG 58.629 40.000 14.97 0.00 34.75 2.90
2344 3752 6.204108 TCAATATTGTAGTCGTCGCTAGATGA 59.796 38.462 14.97 0.00 39.89 2.92
2345 3753 6.745159 ATATTGTAGTCGTCGCTAGATGAT 57.255 37.500 0.00 0.00 43.54 2.45
2346 3754 4.469625 TTGTAGTCGTCGCTAGATGATC 57.530 45.455 0.00 0.00 43.54 2.92
2347 3755 3.729966 TGTAGTCGTCGCTAGATGATCT 58.270 45.455 0.00 0.00 43.54 2.75
2348 3756 4.879598 TGTAGTCGTCGCTAGATGATCTA 58.120 43.478 1.72 1.72 43.54 1.98
2349 3757 5.480205 TGTAGTCGTCGCTAGATGATCTAT 58.520 41.667 2.11 0.00 43.54 1.98
2350 3758 4.937696 AGTCGTCGCTAGATGATCTATG 57.062 45.455 2.11 0.00 43.54 2.23
2351 3759 3.687212 AGTCGTCGCTAGATGATCTATGG 59.313 47.826 2.11 0.00 43.54 2.74
2352 3760 3.685272 GTCGTCGCTAGATGATCTATGGA 59.315 47.826 2.11 0.99 43.54 3.41
2353 3761 4.334203 GTCGTCGCTAGATGATCTATGGAT 59.666 45.833 2.11 0.00 43.54 3.41
2354 3762 4.572795 TCGTCGCTAGATGATCTATGGATC 59.427 45.833 11.92 11.92 46.20 3.36
2355 3763 4.574421 CGTCGCTAGATGATCTATGGATCT 59.426 45.833 18.64 5.81 46.18 2.75
2356 3764 5.503846 CGTCGCTAGATGATCTATGGATCTG 60.504 48.000 18.64 6.47 46.18 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.425278 GTGCTGTAGCGCGCTATAG 58.575 57.895 42.69 42.69 45.83 1.31
10 11 4.628160 GTGCTGTAGCGCGCTATA 57.372 55.556 39.99 35.46 45.83 1.31
17 18 0.778815 GCTATTAGCGTGCTGTAGCG 59.221 55.000 18.67 2.07 45.83 4.26
18 19 1.852942 TGCTATTAGCGTGCTGTAGC 58.147 50.000 23.09 23.09 46.26 3.58
19 20 6.712241 AAATATGCTATTAGCGTGCTGTAG 57.288 37.500 18.61 7.98 46.26 2.74
20 21 6.704050 TGAAAATATGCTATTAGCGTGCTGTA 59.296 34.615 18.61 0.75 46.26 2.74
21 22 5.527214 TGAAAATATGCTATTAGCGTGCTGT 59.473 36.000 18.61 2.72 46.26 4.40
22 23 5.989249 TGAAAATATGCTATTAGCGTGCTG 58.011 37.500 18.61 0.00 46.26 4.41
23 24 5.760253 ACTGAAAATATGCTATTAGCGTGCT 59.240 36.000 18.61 0.00 46.26 4.40
24 25 5.848036 CACTGAAAATATGCTATTAGCGTGC 59.152 40.000 18.61 5.49 46.26 5.34
25 26 6.365839 CCACTGAAAATATGCTATTAGCGTG 58.634 40.000 18.61 12.29 46.26 5.34
26 27 5.049405 GCCACTGAAAATATGCTATTAGCGT 60.049 40.000 14.53 14.53 46.26 5.07
27 28 5.385617 GCCACTGAAAATATGCTATTAGCG 58.614 41.667 10.94 0.00 46.26 4.26
28 29 5.179368 TCGCCACTGAAAATATGCTATTAGC 59.821 40.000 8.80 8.80 42.82 3.09
29 30 6.593978 GTCGCCACTGAAAATATGCTATTAG 58.406 40.000 0.00 0.00 0.00 1.73
30 31 5.176774 CGTCGCCACTGAAAATATGCTATTA 59.823 40.000 0.00 0.00 0.00 0.98
31 32 4.024893 CGTCGCCACTGAAAATATGCTATT 60.025 41.667 0.00 0.00 0.00 1.73
32 33 3.494626 CGTCGCCACTGAAAATATGCTAT 59.505 43.478 0.00 0.00 0.00 2.97
33 34 2.863740 CGTCGCCACTGAAAATATGCTA 59.136 45.455 0.00 0.00 0.00 3.49
34 35 1.665679 CGTCGCCACTGAAAATATGCT 59.334 47.619 0.00 0.00 0.00 3.79
35 36 1.856014 GCGTCGCCACTGAAAATATGC 60.856 52.381 5.75 0.00 0.00 3.14
36 37 1.665679 AGCGTCGCCACTGAAAATATG 59.334 47.619 14.86 0.00 0.00 1.78
37 38 2.024176 AGCGTCGCCACTGAAAATAT 57.976 45.000 14.86 0.00 0.00 1.28
38 39 2.658373 TAGCGTCGCCACTGAAAATA 57.342 45.000 14.86 0.00 0.00 1.40
39 40 2.024176 ATAGCGTCGCCACTGAAAAT 57.976 45.000 14.86 0.00 0.00 1.82
40 41 1.803334 AATAGCGTCGCCACTGAAAA 58.197 45.000 14.86 0.00 0.00 2.29
41 42 1.803334 AAATAGCGTCGCCACTGAAA 58.197 45.000 14.86 0.00 0.00 2.69
42 43 1.803334 AAAATAGCGTCGCCACTGAA 58.197 45.000 14.86 0.00 0.00 3.02
43 44 1.803334 AAAAATAGCGTCGCCACTGA 58.197 45.000 14.86 0.00 0.00 3.41
77 78 7.230027 AGATGGCCATTAAAACCAATGAAAAA 58.770 30.769 21.84 0.00 38.01 1.94
78 79 6.777782 AGATGGCCATTAAAACCAATGAAAA 58.222 32.000 21.84 0.00 38.01 2.29
79 80 6.371595 AGATGGCCATTAAAACCAATGAAA 57.628 33.333 21.84 0.00 38.01 2.69
80 81 6.171921 CAAGATGGCCATTAAAACCAATGAA 58.828 36.000 21.84 0.00 38.01 2.57
81 82 5.248020 ACAAGATGGCCATTAAAACCAATGA 59.752 36.000 21.84 0.00 38.01 2.57
82 83 5.490159 ACAAGATGGCCATTAAAACCAATG 58.510 37.500 21.84 11.14 36.94 2.82
83 84 5.760484 ACAAGATGGCCATTAAAACCAAT 57.240 34.783 21.84 0.00 36.94 3.16
84 85 6.865834 ATACAAGATGGCCATTAAAACCAA 57.134 33.333 21.84 1.56 36.94 3.67
85 86 6.865834 AATACAAGATGGCCATTAAAACCA 57.134 33.333 21.84 2.76 37.99 3.67
86 87 7.777095 TGTAATACAAGATGGCCATTAAAACC 58.223 34.615 21.84 5.63 0.00 3.27
143 144 6.665465 ACGAGCAAGTTTTTAAATACACTCC 58.335 36.000 10.78 0.62 0.00 3.85
163 164 7.507304 ACGAATAGTTTTTAACACATGACGAG 58.493 34.615 0.00 0.00 0.00 4.18
199 200 9.859152 TTGGGGAAATAAAAATTTCAAAGATGT 57.141 25.926 11.70 0.00 41.12 3.06
206 207 8.939932 ACCTACTTTGGGGAAATAAAAATTTCA 58.060 29.630 11.70 0.00 41.12 2.69
220 221 6.208797 CCTTTTCTCTTTTACCTACTTTGGGG 59.791 42.308 0.00 0.00 0.00 4.96
222 223 7.818997 ACCTTTTCTCTTTTACCTACTTTGG 57.181 36.000 0.00 0.00 0.00 3.28
231 232 7.286087 TGGGGTTTTCTACCTTTTCTCTTTTAC 59.714 37.037 0.00 0.00 46.86 2.01
232 233 7.355890 TGGGGTTTTCTACCTTTTCTCTTTTA 58.644 34.615 0.00 0.00 46.86 1.52
233 234 6.199376 TGGGGTTTTCTACCTTTTCTCTTTT 58.801 36.000 0.00 0.00 46.86 2.27
340 342 5.247337 CCTACCTCTTCTTCTGTTCTCCTTT 59.753 44.000 0.00 0.00 0.00 3.11
474 476 3.997021 CTCTCTGCCTGTAAATGAACGTT 59.003 43.478 0.00 0.00 0.00 3.99
476 478 3.849911 TCTCTCTGCCTGTAAATGAACG 58.150 45.455 0.00 0.00 0.00 3.95
477 479 5.078411 TCTCTCTCTGCCTGTAAATGAAC 57.922 43.478 0.00 0.00 0.00 3.18
478 480 5.019470 TCTCTCTCTCTGCCTGTAAATGAA 58.981 41.667 0.00 0.00 0.00 2.57
479 481 4.604156 TCTCTCTCTCTGCCTGTAAATGA 58.396 43.478 0.00 0.00 0.00 2.57
480 482 4.644234 TCTCTCTCTCTCTGCCTGTAAATG 59.356 45.833 0.00 0.00 0.00 2.32
481 483 4.865905 TCTCTCTCTCTCTGCCTGTAAAT 58.134 43.478 0.00 0.00 0.00 1.40
484 486 3.111484 TCTCTCTCTCTCTCTGCCTGTA 58.889 50.000 0.00 0.00 0.00 2.74
485 487 1.915489 TCTCTCTCTCTCTCTGCCTGT 59.085 52.381 0.00 0.00 0.00 4.00
486 488 2.171237 TCTCTCTCTCTCTCTCTGCCTG 59.829 54.545 0.00 0.00 0.00 4.85
487 489 2.437281 CTCTCTCTCTCTCTCTCTGCCT 59.563 54.545 0.00 0.00 0.00 4.75
488 490 2.435805 TCTCTCTCTCTCTCTCTCTGCC 59.564 54.545 0.00 0.00 0.00 4.85
489 491 3.386078 TCTCTCTCTCTCTCTCTCTCTGC 59.614 52.174 0.00 0.00 0.00 4.26
492 494 3.381908 ACGTCTCTCTCTCTCTCTCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
493 495 3.366396 ACGTCTCTCTCTCTCTCTCTCT 58.634 50.000 0.00 0.00 0.00 3.10
494 496 3.491104 GGACGTCTCTCTCTCTCTCTCTC 60.491 56.522 16.46 0.00 0.00 3.20
495 497 2.431057 GGACGTCTCTCTCTCTCTCTCT 59.569 54.545 16.46 0.00 0.00 3.10
496 498 2.167693 TGGACGTCTCTCTCTCTCTCTC 59.832 54.545 16.46 0.00 0.00 3.20
497 499 2.184533 TGGACGTCTCTCTCTCTCTCT 58.815 52.381 16.46 0.00 0.00 3.10
498 500 2.684001 TGGACGTCTCTCTCTCTCTC 57.316 55.000 16.46 0.00 0.00 3.20
500 502 4.398044 AGAAAATGGACGTCTCTCTCTCTC 59.602 45.833 16.46 2.84 0.00 3.20
501 503 4.340617 AGAAAATGGACGTCTCTCTCTCT 58.659 43.478 16.46 7.98 0.00 3.10
502 504 4.712122 AGAAAATGGACGTCTCTCTCTC 57.288 45.455 16.46 5.83 0.00 3.20
503 505 6.391537 GTTTAGAAAATGGACGTCTCTCTCT 58.608 40.000 16.46 12.92 0.00 3.10
504 506 5.577554 GGTTTAGAAAATGGACGTCTCTCTC 59.422 44.000 16.46 6.34 0.00 3.20
506 508 4.326548 CGGTTTAGAAAATGGACGTCTCTC 59.673 45.833 16.46 5.29 0.00 3.20
507 509 4.243270 CGGTTTAGAAAATGGACGTCTCT 58.757 43.478 16.46 12.19 0.00 3.10
508 510 3.370061 CCGGTTTAGAAAATGGACGTCTC 59.630 47.826 16.46 4.48 0.00 3.36
510 512 2.159612 GCCGGTTTAGAAAATGGACGTC 60.160 50.000 7.13 7.13 0.00 4.34
511 513 1.808343 GCCGGTTTAGAAAATGGACGT 59.192 47.619 1.90 0.00 0.00 4.34
512 514 1.201987 CGCCGGTTTAGAAAATGGACG 60.202 52.381 1.90 0.00 0.00 4.79
515 517 3.691498 GATTCGCCGGTTTAGAAAATGG 58.309 45.455 1.90 0.00 0.00 3.16
516 518 3.181514 ACGATTCGCCGGTTTAGAAAATG 60.182 43.478 1.90 2.04 0.00 2.32
517 519 3.004862 ACGATTCGCCGGTTTAGAAAAT 58.995 40.909 1.90 0.00 0.00 1.82
518 520 2.412770 GACGATTCGCCGGTTTAGAAAA 59.587 45.455 1.90 0.00 0.00 2.29
520 522 1.067706 TGACGATTCGCCGGTTTAGAA 60.068 47.619 1.90 4.76 0.00 2.10
522 524 1.567504 ATGACGATTCGCCGGTTTAG 58.432 50.000 1.90 0.00 0.00 1.85
523 525 2.867287 TATGACGATTCGCCGGTTTA 57.133 45.000 1.90 0.00 0.00 2.01
524 526 1.864711 CATATGACGATTCGCCGGTTT 59.135 47.619 1.90 0.00 0.00 3.27
525 527 1.202486 ACATATGACGATTCGCCGGTT 60.202 47.619 10.38 0.00 0.00 4.44
526 528 0.387929 ACATATGACGATTCGCCGGT 59.612 50.000 10.38 0.00 0.00 5.28
527 529 0.784178 CACATATGACGATTCGCCGG 59.216 55.000 10.38 0.00 0.00 6.13
528 530 1.487482 ACACATATGACGATTCGCCG 58.513 50.000 10.38 0.00 0.00 6.46
529 531 2.032894 CCAACACATATGACGATTCGCC 60.033 50.000 10.38 0.00 0.00 5.54
530 532 2.863740 TCCAACACATATGACGATTCGC 59.136 45.455 10.38 0.00 0.00 4.70
531 533 3.060272 GCTCCAACACATATGACGATTCG 60.060 47.826 10.38 4.14 0.00 3.34
532 534 3.060272 CGCTCCAACACATATGACGATTC 60.060 47.826 10.38 0.00 0.00 2.52
533 535 2.866156 CGCTCCAACACATATGACGATT 59.134 45.455 10.38 0.00 0.00 3.34
534 536 2.100749 TCGCTCCAACACATATGACGAT 59.899 45.455 10.38 0.00 0.00 3.73
535 537 1.474879 TCGCTCCAACACATATGACGA 59.525 47.619 10.38 2.79 0.00 4.20
536 538 1.921243 TCGCTCCAACACATATGACG 58.079 50.000 10.38 2.45 0.00 4.35
537 539 4.391830 TCTTTTCGCTCCAACACATATGAC 59.608 41.667 10.38 0.00 0.00 3.06
538 540 4.574892 TCTTTTCGCTCCAACACATATGA 58.425 39.130 10.38 0.00 0.00 2.15
539 541 4.944962 TCTTTTCGCTCCAACACATATG 57.055 40.909 0.00 0.00 0.00 1.78
540 542 4.142600 GCTTCTTTTCGCTCCAACACATAT 60.143 41.667 0.00 0.00 0.00 1.78
541 543 3.188460 GCTTCTTTTCGCTCCAACACATA 59.812 43.478 0.00 0.00 0.00 2.29
542 544 2.030805 GCTTCTTTTCGCTCCAACACAT 60.031 45.455 0.00 0.00 0.00 3.21
543 545 1.333619 GCTTCTTTTCGCTCCAACACA 59.666 47.619 0.00 0.00 0.00 3.72
545 547 1.603802 CTGCTTCTTTTCGCTCCAACA 59.396 47.619 0.00 0.00 0.00 3.33
546 548 1.873591 TCTGCTTCTTTTCGCTCCAAC 59.126 47.619 0.00 0.00 0.00 3.77
547 549 2.254546 TCTGCTTCTTTTCGCTCCAA 57.745 45.000 0.00 0.00 0.00 3.53
548 550 2.254546 TTCTGCTTCTTTTCGCTCCA 57.745 45.000 0.00 0.00 0.00 3.86
549 551 2.095516 CCTTTCTGCTTCTTTTCGCTCC 60.096 50.000 0.00 0.00 0.00 4.70
550 552 2.808543 TCCTTTCTGCTTCTTTTCGCTC 59.191 45.455 0.00 0.00 0.00 5.03
551 553 2.810852 CTCCTTTCTGCTTCTTTTCGCT 59.189 45.455 0.00 0.00 0.00 4.93
552 554 2.666895 GCTCCTTTCTGCTTCTTTTCGC 60.667 50.000 0.00 0.00 0.00 4.70
553 555 2.549754 TGCTCCTTTCTGCTTCTTTTCG 59.450 45.455 0.00 0.00 0.00 3.46
557 559 1.532523 GCTGCTCCTTTCTGCTTCTT 58.467 50.000 0.00 0.00 0.00 2.52
558 560 0.322366 GGCTGCTCCTTTCTGCTTCT 60.322 55.000 0.00 0.00 0.00 2.85
559 561 1.311651 GGGCTGCTCCTTTCTGCTTC 61.312 60.000 0.00 0.00 34.39 3.86
560 562 1.303970 GGGCTGCTCCTTTCTGCTT 60.304 57.895 0.00 0.00 34.39 3.91
561 563 2.229928 AGGGCTGCTCCTTTCTGCT 61.230 57.895 0.00 0.00 32.13 4.24
562 564 2.045131 CAGGGCTGCTCCTTTCTGC 61.045 63.158 6.91 0.00 34.31 4.26
563 565 4.315588 CAGGGCTGCTCCTTTCTG 57.684 61.111 6.91 0.00 34.31 3.02
576 578 4.880537 CGCCGTCTAGCAGCAGGG 62.881 72.222 0.00 0.00 0.00 4.45
595 696 4.893601 GAAGCCTAGTCCGCCCGC 62.894 72.222 0.00 0.00 0.00 6.13
598 699 2.202756 CACGAAGCCTAGTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
599 700 1.077089 GAACACGAAGCCTAGTCCGC 61.077 60.000 0.00 0.00 0.00 5.54
600 701 0.797249 CGAACACGAAGCCTAGTCCG 60.797 60.000 0.00 0.00 0.00 4.79
601 702 0.243095 ACGAACACGAAGCCTAGTCC 59.757 55.000 0.00 0.00 0.00 3.85
603 704 0.672342 ACACGAACACGAAGCCTAGT 59.328 50.000 0.00 0.00 0.00 2.57
604 705 1.455786 CAACACGAACACGAAGCCTAG 59.544 52.381 0.00 0.00 0.00 3.02
605 706 1.493772 CAACACGAACACGAAGCCTA 58.506 50.000 0.00 0.00 0.00 3.93
609 710 3.120786 GGAATACCAACACGAACACGAAG 60.121 47.826 0.00 0.00 35.97 3.79
610 711 2.801679 GGAATACCAACACGAACACGAA 59.198 45.455 0.00 0.00 35.97 3.85
611 712 2.036217 AGGAATACCAACACGAACACGA 59.964 45.455 0.00 0.00 38.94 4.35
612 713 2.409975 AGGAATACCAACACGAACACG 58.590 47.619 0.00 0.00 38.94 4.49
613 714 3.660865 AGAGGAATACCAACACGAACAC 58.339 45.455 0.00 0.00 38.94 3.32
616 717 3.991773 CGAAAGAGGAATACCAACACGAA 59.008 43.478 0.00 0.00 38.94 3.85
617 718 3.006110 ACGAAAGAGGAATACCAACACGA 59.994 43.478 0.00 0.00 38.94 4.35
618 719 3.122948 CACGAAAGAGGAATACCAACACG 59.877 47.826 0.00 0.00 38.94 4.49
619 720 4.062991 ACACGAAAGAGGAATACCAACAC 58.937 43.478 0.00 0.00 38.94 3.32
621 722 3.367025 CGACACGAAAGAGGAATACCAAC 59.633 47.826 0.00 0.00 38.94 3.77
622 723 3.006110 ACGACACGAAAGAGGAATACCAA 59.994 43.478 0.00 0.00 38.94 3.67
623 724 2.559668 ACGACACGAAAGAGGAATACCA 59.440 45.455 0.00 0.00 38.94 3.25
624 725 3.119566 AGACGACACGAAAGAGGAATACC 60.120 47.826 0.00 0.00 0.00 2.73
625 726 4.094090 AGACGACACGAAAGAGGAATAC 57.906 45.455 0.00 0.00 0.00 1.89
626 727 5.356190 ACATAGACGACACGAAAGAGGAATA 59.644 40.000 0.00 0.00 0.00 1.75
627 728 4.158025 ACATAGACGACACGAAAGAGGAAT 59.842 41.667 0.00 0.00 0.00 3.01
628 729 3.504906 ACATAGACGACACGAAAGAGGAA 59.495 43.478 0.00 0.00 0.00 3.36
629 730 3.079578 ACATAGACGACACGAAAGAGGA 58.920 45.455 0.00 0.00 0.00 3.71
630 731 3.172050 CACATAGACGACACGAAAGAGG 58.828 50.000 0.00 0.00 0.00 3.69
632 733 3.909776 ACACATAGACGACACGAAAGA 57.090 42.857 0.00 0.00 0.00 2.52
633 734 3.121279 CCAACACATAGACGACACGAAAG 59.879 47.826 0.00 0.00 0.00 2.62
634 735 3.054166 CCAACACATAGACGACACGAAA 58.946 45.455 0.00 0.00 0.00 3.46
635 736 2.668250 CCAACACATAGACGACACGAA 58.332 47.619 0.00 0.00 0.00 3.85
636 737 1.667756 GCCAACACATAGACGACACGA 60.668 52.381 0.00 0.00 0.00 4.35
637 738 0.713883 GCCAACACATAGACGACACG 59.286 55.000 0.00 0.00 0.00 4.49
638 739 2.080286 AGCCAACACATAGACGACAC 57.920 50.000 0.00 0.00 0.00 3.67
639 740 2.094390 GGTAGCCAACACATAGACGACA 60.094 50.000 0.00 0.00 0.00 4.35
640 741 2.165845 AGGTAGCCAACACATAGACGAC 59.834 50.000 0.00 0.00 0.00 4.34
641 742 2.453521 AGGTAGCCAACACATAGACGA 58.546 47.619 0.00 0.00 0.00 4.20
642 743 2.961526 AGGTAGCCAACACATAGACG 57.038 50.000 0.00 0.00 0.00 4.18
644 745 3.990369 AGGTAGGTAGCCAACACATAGA 58.010 45.455 0.00 0.00 0.00 1.98
645 746 4.262079 GCTAGGTAGGTAGCCAACACATAG 60.262 50.000 0.00 0.00 39.74 2.23
646 747 3.640029 GCTAGGTAGGTAGCCAACACATA 59.360 47.826 0.00 0.00 39.74 2.29
648 749 1.829222 GCTAGGTAGGTAGCCAACACA 59.171 52.381 0.00 0.00 39.74 3.72
649 750 1.829222 TGCTAGGTAGGTAGCCAACAC 59.171 52.381 0.61 0.00 44.23 3.32
654 755 2.228343 CGTATGTGCTAGGTAGGTAGCC 59.772 54.545 0.61 0.00 44.23 3.93
655 756 2.883386 ACGTATGTGCTAGGTAGGTAGC 59.117 50.000 0.00 0.00 44.96 3.58
657 758 5.034852 TGTACGTATGTGCTAGGTAGGTA 57.965 43.478 0.00 0.00 32.77 3.08
658 759 3.881688 CTGTACGTATGTGCTAGGTAGGT 59.118 47.826 0.00 0.00 32.77 3.08
659 760 3.881688 ACTGTACGTATGTGCTAGGTAGG 59.118 47.826 0.00 0.00 32.77 3.18
660 761 5.757320 AGTACTGTACGTATGTGCTAGGTAG 59.243 44.000 16.17 0.00 32.77 3.18
662 763 4.521146 AGTACTGTACGTATGTGCTAGGT 58.479 43.478 16.17 4.11 33.24 3.08
664 765 5.049818 GGGTAGTACTGTACGTATGTGCTAG 60.050 48.000 20.63 3.53 31.59 3.42
665 766 4.816385 GGGTAGTACTGTACGTATGTGCTA 59.184 45.833 18.13 18.13 0.00 3.49
666 767 3.629398 GGGTAGTACTGTACGTATGTGCT 59.371 47.826 19.56 19.56 0.00 4.40
669 770 5.102953 TCTGGGTAGTACTGTACGTATGT 57.897 43.478 11.97 4.00 0.00 2.29
670 771 5.562307 GCATCTGGGTAGTACTGTACGTATG 60.562 48.000 11.97 4.41 0.00 2.39
671 772 4.518211 GCATCTGGGTAGTACTGTACGTAT 59.482 45.833 11.97 0.00 0.00 3.06
672 773 3.879295 GCATCTGGGTAGTACTGTACGTA 59.121 47.826 11.97 0.00 0.00 3.57
674 775 2.686405 TGCATCTGGGTAGTACTGTACG 59.314 50.000 11.97 0.00 0.00 3.67
677 778 2.158900 GCATGCATCTGGGTAGTACTGT 60.159 50.000 14.21 0.00 0.00 3.55
678 779 2.103771 AGCATGCATCTGGGTAGTACTG 59.896 50.000 21.98 0.00 0.00 2.74
679 780 2.402564 AGCATGCATCTGGGTAGTACT 58.597 47.619 21.98 0.00 0.00 2.73
680 781 2.918712 AGCATGCATCTGGGTAGTAC 57.081 50.000 21.98 0.00 0.00 2.73
682 783 2.402564 ACTAGCATGCATCTGGGTAGT 58.597 47.619 21.98 17.15 40.05 2.73
684 785 2.224042 CGAACTAGCATGCATCTGGGTA 60.224 50.000 21.98 0.00 0.00 3.69
686 787 1.224075 CGAACTAGCATGCATCTGGG 58.776 55.000 21.98 5.34 0.00 4.45
690 791 1.599542 GAACCCGAACTAGCATGCATC 59.400 52.381 21.98 11.21 0.00 3.91
691 792 1.668419 GAACCCGAACTAGCATGCAT 58.332 50.000 21.98 7.68 0.00 3.96
692 793 0.392461 GGAACCCGAACTAGCATGCA 60.392 55.000 21.98 5.01 0.00 3.96
693 794 0.107654 AGGAACCCGAACTAGCATGC 60.108 55.000 10.51 10.51 0.00 4.06
694 795 1.473434 GGAGGAACCCGAACTAGCATG 60.473 57.143 0.00 0.00 0.00 4.06
696 797 2.283824 GGAGGAACCCGAACTAGCA 58.716 57.895 0.00 0.00 0.00 3.49
711 812 2.642254 TACGTGCCCTTGACCGGAG 61.642 63.158 9.46 0.00 0.00 4.63
714 815 2.433664 GGTACGTGCCCTTGACCG 60.434 66.667 12.25 0.00 0.00 4.79
715 816 0.322187 ATTGGTACGTGCCCTTGACC 60.322 55.000 20.66 7.37 0.00 4.02
716 817 1.084289 GATTGGTACGTGCCCTTGAC 58.916 55.000 20.66 3.70 0.00 3.18
718 819 1.029947 GGGATTGGTACGTGCCCTTG 61.030 60.000 20.66 0.00 35.86 3.61
719 820 1.205460 AGGGATTGGTACGTGCCCTT 61.205 55.000 20.66 7.21 46.80 3.95
720 821 1.615424 AGGGATTGGTACGTGCCCT 60.615 57.895 20.66 11.91 44.17 5.19
721 822 0.179065 GTAGGGATTGGTACGTGCCC 60.179 60.000 20.66 9.67 39.12 5.36
722 823 0.179065 GGTAGGGATTGGTACGTGCC 60.179 60.000 16.68 16.68 0.00 5.01
723 824 0.529119 CGGTAGGGATTGGTACGTGC 60.529 60.000 0.00 0.00 0.00 5.34
724 825 0.103572 CCGGTAGGGATTGGTACGTG 59.896 60.000 0.00 0.00 38.47 4.49
726 827 0.672342 CTCCGGTAGGGATTGGTACG 59.328 60.000 0.00 0.00 46.04 3.67
727 828 2.077687 TCTCCGGTAGGGATTGGTAC 57.922 55.000 0.00 0.00 46.04 3.34
728 829 2.023695 AGTTCTCCGGTAGGGATTGGTA 60.024 50.000 0.00 0.00 46.04 3.25
729 830 1.201424 GTTCTCCGGTAGGGATTGGT 58.799 55.000 0.00 0.00 46.04 3.67
731 832 2.364647 GGTAGTTCTCCGGTAGGGATTG 59.635 54.545 0.00 0.00 46.04 2.67
732 833 2.023695 TGGTAGTTCTCCGGTAGGGATT 60.024 50.000 0.00 0.00 46.04 3.01
733 834 1.572415 TGGTAGTTCTCCGGTAGGGAT 59.428 52.381 0.00 0.00 46.04 3.85
734 835 1.002069 TGGTAGTTCTCCGGTAGGGA 58.998 55.000 0.00 0.00 44.68 4.20
735 836 1.856629 TTGGTAGTTCTCCGGTAGGG 58.143 55.000 0.00 0.00 38.33 3.53
736 837 2.364647 GGATTGGTAGTTCTCCGGTAGG 59.635 54.545 0.00 0.00 39.46 3.18
738 839 2.023695 AGGGATTGGTAGTTCTCCGGTA 60.024 50.000 0.00 0.00 0.00 4.02
740 841 1.413077 GAGGGATTGGTAGTTCTCCGG 59.587 57.143 0.00 0.00 0.00 5.14
741 842 1.413077 GGAGGGATTGGTAGTTCTCCG 59.587 57.143 0.00 0.00 32.67 4.63
743 844 2.765502 AGGGAGGGATTGGTAGTTCTC 58.234 52.381 0.00 0.00 0.00 2.87
744 845 2.972153 AGGGAGGGATTGGTAGTTCT 57.028 50.000 0.00 0.00 0.00 3.01
745 846 3.924922 TCTAGGGAGGGATTGGTAGTTC 58.075 50.000 0.00 0.00 0.00 3.01
746 847 4.494591 GATCTAGGGAGGGATTGGTAGTT 58.505 47.826 0.00 0.00 0.00 2.24
747 848 3.500654 CGATCTAGGGAGGGATTGGTAGT 60.501 52.174 0.00 0.00 0.00 2.73
748 849 3.093057 CGATCTAGGGAGGGATTGGTAG 58.907 54.545 0.00 0.00 0.00 3.18
749 850 2.225293 CCGATCTAGGGAGGGATTGGTA 60.225 54.545 0.00 0.00 38.22 3.25
750 851 1.483307 CCGATCTAGGGAGGGATTGGT 60.483 57.143 0.00 0.00 38.22 3.67
751 852 1.270907 CCGATCTAGGGAGGGATTGG 58.729 60.000 0.00 0.00 37.22 3.16
763 864 2.292267 GACCGTAACAGACCCGATCTA 58.708 52.381 0.00 0.00 35.15 1.98
765 866 0.101939 GGACCGTAACAGACCCGATC 59.898 60.000 0.00 0.00 0.00 3.69
766 867 1.660560 CGGACCGTAACAGACCCGAT 61.661 60.000 5.48 0.00 39.31 4.18
767 868 2.334946 CGGACCGTAACAGACCCGA 61.335 63.158 5.48 0.00 39.31 5.14
769 870 1.535204 TTCCGGACCGTAACAGACCC 61.535 60.000 13.94 0.00 0.00 4.46
771 872 3.182182 GTTATTCCGGACCGTAACAGAC 58.818 50.000 20.48 0.00 0.00 3.51
775 876 2.867975 CCATGTTATTCCGGACCGTAAC 59.132 50.000 13.94 19.36 0.00 2.50
776 877 2.765135 TCCATGTTATTCCGGACCGTAA 59.235 45.455 13.94 3.14 0.00 3.18
778 879 1.138266 CTCCATGTTATTCCGGACCGT 59.862 52.381 13.94 0.00 0.00 4.83
779 880 1.411246 TCTCCATGTTATTCCGGACCG 59.589 52.381 1.83 6.99 0.00 4.79
780 881 2.434702 AGTCTCCATGTTATTCCGGACC 59.565 50.000 1.83 0.00 0.00 4.46
781 882 3.821421 AGTCTCCATGTTATTCCGGAC 57.179 47.619 1.83 0.00 0.00 4.79
782 883 3.517901 ACAAGTCTCCATGTTATTCCGGA 59.482 43.478 0.00 0.00 0.00 5.14
783 884 3.623060 CACAAGTCTCCATGTTATTCCGG 59.377 47.826 0.00 0.00 0.00 5.14
784 885 3.623060 CCACAAGTCTCCATGTTATTCCG 59.377 47.826 0.00 0.00 0.00 4.30
785 886 4.396166 CACCACAAGTCTCCATGTTATTCC 59.604 45.833 0.00 0.00 0.00 3.01
787 888 4.335416 CCACCACAAGTCTCCATGTTATT 58.665 43.478 0.00 0.00 0.00 1.40
788 889 3.308402 CCCACCACAAGTCTCCATGTTAT 60.308 47.826 0.00 0.00 0.00 1.89
789 890 2.039746 CCCACCACAAGTCTCCATGTTA 59.960 50.000 0.00 0.00 0.00 2.41
791 892 0.401738 CCCACCACAAGTCTCCATGT 59.598 55.000 0.00 0.00 0.00 3.21
793 894 1.352352 CTTCCCACCACAAGTCTCCAT 59.648 52.381 0.00 0.00 0.00 3.41
796 897 0.398318 AGCTTCCCACCACAAGTCTC 59.602 55.000 0.00 0.00 0.00 3.36
799 900 1.493022 TGTTAGCTTCCCACCACAAGT 59.507 47.619 0.00 0.00 0.00 3.16
883 1122 1.679139 TGATCCGGGAATTGACATGC 58.321 50.000 0.00 0.00 0.00 4.06
884 1123 2.481568 CGATGATCCGGGAATTGACATG 59.518 50.000 0.00 0.00 0.00 3.21
885 1124 2.104792 ACGATGATCCGGGAATTGACAT 59.895 45.455 0.00 2.52 0.00 3.06
886 1125 1.484653 ACGATGATCCGGGAATTGACA 59.515 47.619 0.00 0.00 0.00 3.58
887 1126 2.240493 ACGATGATCCGGGAATTGAC 57.760 50.000 0.00 0.00 0.00 3.18
888 1127 2.560504 CAACGATGATCCGGGAATTGA 58.439 47.619 0.00 0.00 0.00 2.57
889 1128 1.002468 GCAACGATGATCCGGGAATTG 60.002 52.381 0.00 0.00 0.00 2.32
900 1144 2.548057 GGACAGACAAAAGCAACGATGA 59.452 45.455 0.00 0.00 0.00 2.92
901 1145 2.549754 AGGACAGACAAAAGCAACGATG 59.450 45.455 0.00 0.00 0.00 3.84
902 1146 2.808543 GAGGACAGACAAAAGCAACGAT 59.191 45.455 0.00 0.00 0.00 3.73
903 1147 2.210116 GAGGACAGACAAAAGCAACGA 58.790 47.619 0.00 0.00 0.00 3.85
904 1148 1.264288 GGAGGACAGACAAAAGCAACG 59.736 52.381 0.00 0.00 0.00 4.10
905 1149 1.609072 GGGAGGACAGACAAAAGCAAC 59.391 52.381 0.00 0.00 0.00 4.17
907 1151 0.250295 CGGGAGGACAGACAAAAGCA 60.250 55.000 0.00 0.00 0.00 3.91
908 1152 1.578206 GCGGGAGGACAGACAAAAGC 61.578 60.000 0.00 0.00 0.00 3.51
909 1153 0.035458 AGCGGGAGGACAGACAAAAG 59.965 55.000 0.00 0.00 0.00 2.27
910 1154 0.250295 CAGCGGGAGGACAGACAAAA 60.250 55.000 0.00 0.00 0.00 2.44
915 1207 0.760567 ATATGCAGCGGGAGGACAGA 60.761 55.000 0.00 0.00 0.00 3.41
957 1259 3.589735 TGGCTACTTGGTTTCTTGGGATA 59.410 43.478 0.00 0.00 0.00 2.59
1041 1363 1.453379 CTTCTCCCGGTCGAGGCTA 60.453 63.158 0.00 0.00 0.00 3.93
1343 1665 2.650322 GCGGGAACTATTTGGGAATGA 58.350 47.619 0.00 0.00 0.00 2.57
1347 1669 0.996583 AAGGCGGGAACTATTTGGGA 59.003 50.000 0.00 0.00 0.00 4.37
1752 3001 3.227276 CGCTAGCCACCCGATCCT 61.227 66.667 9.66 0.00 0.00 3.24
1784 3033 3.496160 CCAGGGATGAGGGGGCTG 61.496 72.222 0.00 0.00 0.00 4.85
1912 3193 2.677325 GAGCTCAGCAAGAGATTCAGCA 60.677 50.000 9.40 0.00 44.50 4.41
2016 3314 4.960938 ACTCACAACTGAAGTAATCTGCA 58.039 39.130 0.00 0.00 0.00 4.41
2017 3315 5.233988 AGACTCACAACTGAAGTAATCTGC 58.766 41.667 0.00 0.00 0.00 4.26
2020 3318 6.451393 ACAGAGACTCACAACTGAAGTAATC 58.549 40.000 5.02 0.00 34.88 1.75
2021 3319 6.412362 ACAGAGACTCACAACTGAAGTAAT 57.588 37.500 5.02 0.00 34.88 1.89
2022 3320 5.854010 ACAGAGACTCACAACTGAAGTAA 57.146 39.130 5.02 0.00 34.88 2.24
2023 3321 5.592054 CAACAGAGACTCACAACTGAAGTA 58.408 41.667 5.02 0.00 34.88 2.24
2024 3322 4.437239 CAACAGAGACTCACAACTGAAGT 58.563 43.478 5.02 0.00 34.88 3.01
2025 3323 3.247173 GCAACAGAGACTCACAACTGAAG 59.753 47.826 5.02 0.00 34.88 3.02
2026 3324 3.198068 GCAACAGAGACTCACAACTGAA 58.802 45.455 5.02 0.00 34.88 3.02
2027 3325 2.168313 TGCAACAGAGACTCACAACTGA 59.832 45.455 5.02 0.00 34.88 3.41
2028 3326 2.554142 TGCAACAGAGACTCACAACTG 58.446 47.619 5.02 0.00 36.58 3.16
2029 3327 2.988010 TGCAACAGAGACTCACAACT 57.012 45.000 5.02 0.00 0.00 3.16
2030 3328 4.355543 TTTTGCAACAGAGACTCACAAC 57.644 40.909 0.00 0.00 0.00 3.32
2031 3329 5.588246 TGTATTTTGCAACAGAGACTCACAA 59.412 36.000 0.00 0.00 0.00 3.33
2032 3330 5.122519 TGTATTTTGCAACAGAGACTCACA 58.877 37.500 0.00 0.00 0.00 3.58
2104 3402 2.551459 AGCAGAACACTAACTCGTACGT 59.449 45.455 16.05 0.00 0.00 3.57
2149 3557 5.659079 AGAAGGAAGGCCGGATATATTCTAG 59.341 44.000 5.05 0.00 39.96 2.43
2156 3564 1.344763 CGAAGAAGGAAGGCCGGATAT 59.655 52.381 5.05 0.00 39.96 1.63
2163 3571 0.903236 ACTACCCGAAGAAGGAAGGC 59.097 55.000 0.00 0.00 0.00 4.35
2176 3584 3.428589 CGGCTGTTTCTACACTACTACCC 60.429 52.174 0.00 0.00 0.00 3.69
2183 3591 1.676014 GGCATCGGCTGTTTCTACACT 60.676 52.381 0.00 0.00 40.87 3.55
2222 3630 5.360591 ACTGACCAAAACACAAACAAAACA 58.639 33.333 0.00 0.00 0.00 2.83
2231 3639 4.443621 TCATACGAACTGACCAAAACACA 58.556 39.130 0.00 0.00 0.00 3.72
2232 3640 4.510340 ACTCATACGAACTGACCAAAACAC 59.490 41.667 0.00 0.00 0.00 3.32
2291 3699 3.057033 CGGGAGAGTCGAGGAACTAAAAA 60.057 47.826 0.00 0.00 41.55 1.94
2292 3700 2.490903 CGGGAGAGTCGAGGAACTAAAA 59.509 50.000 0.00 0.00 41.55 1.52
2293 3701 2.089980 CGGGAGAGTCGAGGAACTAAA 58.910 52.381 0.00 0.00 41.55 1.85
2294 3702 1.280133 TCGGGAGAGTCGAGGAACTAA 59.720 52.381 0.00 0.00 41.55 2.24
2295 3703 0.907486 TCGGGAGAGTCGAGGAACTA 59.093 55.000 0.00 0.00 41.55 2.24
2296 3704 0.256464 ATCGGGAGAGTCGAGGAACT 59.744 55.000 0.00 0.00 45.48 3.01
2297 3705 1.964552 TATCGGGAGAGTCGAGGAAC 58.035 55.000 0.00 0.00 45.48 3.62
2298 3706 2.723322 TTATCGGGAGAGTCGAGGAA 57.277 50.000 0.00 0.00 45.48 3.36
2299 3707 2.723322 TTTATCGGGAGAGTCGAGGA 57.277 50.000 0.00 0.00 45.48 3.71
2300 3708 2.885266 TGATTTATCGGGAGAGTCGAGG 59.115 50.000 0.00 0.00 45.48 4.63
2301 3709 4.569761 TTGATTTATCGGGAGAGTCGAG 57.430 45.455 0.00 0.00 45.48 4.04
2302 3710 6.835819 ATATTGATTTATCGGGAGAGTCGA 57.164 37.500 0.00 0.00 45.48 4.20
2303 3711 6.868864 ACAATATTGATTTATCGGGAGAGTCG 59.131 38.462 22.16 0.00 45.48 4.18
2304 3712 9.360093 CTACAATATTGATTTATCGGGAGAGTC 57.640 37.037 22.16 0.00 45.48 3.36
2305 3713 8.871125 ACTACAATATTGATTTATCGGGAGAGT 58.129 33.333 22.16 0.00 45.48 3.24
2306 3714 9.360093 GACTACAATATTGATTTATCGGGAGAG 57.640 37.037 22.16 0.53 45.48 3.20
2307 3715 8.027189 CGACTACAATATTGATTTATCGGGAGA 58.973 37.037 22.16 0.00 46.90 3.71
2308 3716 7.813148 ACGACTACAATATTGATTTATCGGGAG 59.187 37.037 22.16 0.00 0.00 4.30
2309 3717 7.663827 ACGACTACAATATTGATTTATCGGGA 58.336 34.615 22.16 0.00 0.00 5.14
2310 3718 7.201325 CGACGACTACAATATTGATTTATCGGG 60.201 40.741 22.16 13.58 0.00 5.14
2311 3719 7.654677 CGACGACTACAATATTGATTTATCGG 58.345 38.462 22.16 7.86 0.00 4.18
2312 3720 7.060748 AGCGACGACTACAATATTGATTTATCG 59.939 37.037 22.16 20.86 0.00 2.92
2313 3721 8.228921 AGCGACGACTACAATATTGATTTATC 57.771 34.615 22.16 10.38 0.00 1.75
2314 3722 9.343103 CTAGCGACGACTACAATATTGATTTAT 57.657 33.333 22.16 1.62 0.00 1.40
2315 3723 8.562052 TCTAGCGACGACTACAATATTGATTTA 58.438 33.333 22.16 3.47 0.00 1.40
2316 3724 7.423199 TCTAGCGACGACTACAATATTGATTT 58.577 34.615 22.16 4.93 0.00 2.17
2317 3725 6.967135 TCTAGCGACGACTACAATATTGATT 58.033 36.000 22.16 3.12 0.00 2.57
2318 3726 6.555812 TCTAGCGACGACTACAATATTGAT 57.444 37.500 22.16 8.81 0.00 2.57
2319 3727 5.996669 TCTAGCGACGACTACAATATTGA 57.003 39.130 22.16 5.10 0.00 2.57
2320 3728 6.371389 TCATCTAGCGACGACTACAATATTG 58.629 40.000 14.01 14.01 0.00 1.90
2321 3729 6.555812 TCATCTAGCGACGACTACAATATT 57.444 37.500 0.00 0.00 0.00 1.28
2322 3730 6.596106 AGATCATCTAGCGACGACTACAATAT 59.404 38.462 0.00 0.00 0.00 1.28
2323 3731 5.932883 AGATCATCTAGCGACGACTACAATA 59.067 40.000 0.00 0.00 0.00 1.90
2324 3732 4.757657 AGATCATCTAGCGACGACTACAAT 59.242 41.667 0.00 0.00 0.00 2.71
2325 3733 4.127907 AGATCATCTAGCGACGACTACAA 58.872 43.478 0.00 0.00 0.00 2.41
2326 3734 3.729966 AGATCATCTAGCGACGACTACA 58.270 45.455 0.00 0.00 0.00 2.74
2327 3735 5.220510 CCATAGATCATCTAGCGACGACTAC 60.221 48.000 0.00 0.00 31.67 2.73
2328 3736 4.870991 CCATAGATCATCTAGCGACGACTA 59.129 45.833 0.00 0.00 31.67 2.59
2329 3737 3.687212 CCATAGATCATCTAGCGACGACT 59.313 47.826 0.00 0.00 31.67 4.18
2330 3738 3.685272 TCCATAGATCATCTAGCGACGAC 59.315 47.826 0.00 0.00 31.67 4.34
2331 3739 3.939066 TCCATAGATCATCTAGCGACGA 58.061 45.455 0.00 0.00 31.67 4.20
2332 3740 4.891627 ATCCATAGATCATCTAGCGACG 57.108 45.455 0.00 0.00 31.67 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.