Multiple sequence alignment - TraesCS7D01G554400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G554400 chr7D 100.000 2618 0 0 1 2618 638332088 638329471 0.000000e+00 4835.0
1 TraesCS7D01G554400 chr7D 91.343 335 23 3 426 756 369986640 369986972 1.100000e-123 453.0
2 TraesCS7D01G554400 chr7D 91.221 262 17 4 1615 1873 217957357 217957099 4.150000e-93 351.0
3 TraesCS7D01G554400 chr7D 77.500 560 97 16 1083 1620 638382125 638381573 2.530000e-80 309.0
4 TraesCS7D01G554400 chr7D 92.453 106 6 2 753 857 638288703 638288599 1.620000e-32 150.0
5 TraesCS7D01G554400 chr7A 89.920 873 79 5 754 1618 727721549 727722420 0.000000e+00 1116.0
6 TraesCS7D01G554400 chr7A 91.126 462 36 5 2159 2618 727723115 727723573 2.860000e-174 621.0
7 TraesCS7D01G554400 chr7A 88.286 461 42 9 2159 2618 727607721 727608170 2.290000e-150 542.0
8 TraesCS7D01G554400 chr7A 91.692 325 23 1 434 754 503423334 503423658 5.140000e-122 448.0
9 TraesCS7D01G554400 chr7A 92.233 309 24 0 1 309 727720994 727721302 3.090000e-119 438.0
10 TraesCS7D01G554400 chr7A 90.578 329 26 5 427 752 424299380 424299054 5.180000e-117 431.0
11 TraesCS7D01G554400 chr7A 93.818 275 16 1 3 276 727606913 727607187 1.870000e-111 412.0
12 TraesCS7D01G554400 chr7A 90.096 313 29 2 1861 2171 727722420 727722732 3.140000e-109 405.0
13 TraesCS7D01G554400 chr7A 75.422 533 99 20 1086 1602 727692462 727692978 2.030000e-56 230.0
14 TraesCS7D01G554400 chr7A 90.722 97 9 0 2075 2171 727607229 727607325 2.110000e-26 130.0
15 TraesCS7D01G554400 chr7B 89.007 846 73 12 785 1618 734379224 734380061 0.000000e+00 1029.0
16 TraesCS7D01G554400 chr7B 91.697 542 41 4 2005 2543 734380433 734380973 0.000000e+00 749.0
17 TraesCS7D01G554400 chr7B 80.231 865 124 32 753 1592 734407493 734408335 8.010000e-170 606.0
18 TraesCS7D01G554400 chr7B 82.428 313 18 8 113 420 734378892 734379172 3.370000e-59 239.0
19 TraesCS7D01G554400 chr6A 93.355 301 20 0 427 727 38683641 38683341 1.850000e-121 446.0
20 TraesCS7D01G554400 chr6A 90.578 329 26 3 430 754 554376673 554377000 5.180000e-117 431.0
21 TraesCS7D01G554400 chr6A 91.633 251 15 3 1617 1865 468060306 468060552 2.490000e-90 342.0
22 TraesCS7D01G554400 chr5A 90.964 332 25 3 427 754 440675613 440675283 2.390000e-120 442.0
23 TraesCS7D01G554400 chr4B 90.504 337 24 4 426 755 585818180 585818515 3.090000e-119 438.0
24 TraesCS7D01G554400 chr4B 90.060 332 29 2 427 754 517212249 517212580 6.700000e-116 427.0
25 TraesCS7D01G554400 chr1A 90.741 324 26 1 436 755 132782615 132782292 1.860000e-116 429.0
26 TraesCS7D01G554400 chr2A 92.490 253 13 3 1615 1865 544306315 544306563 8.910000e-95 357.0
27 TraesCS7D01G554400 chr3D 91.270 252 17 3 1617 1865 233261666 233261915 3.230000e-89 339.0
28 TraesCS7D01G554400 chr3D 94.286 35 1 1 2275 2308 506697564 506697530 5.000000e-03 52.8
29 TraesCS7D01G554400 chr6B 91.235 251 15 4 1617 1865 512717493 512717248 4.170000e-88 335.0
30 TraesCS7D01G554400 chr2B 91.498 247 16 3 1618 1862 87269108 87268865 4.170000e-88 335.0
31 TraesCS7D01G554400 chr1D 90.310 258 19 3 1610 1865 164848360 164848613 1.500000e-87 333.0
32 TraesCS7D01G554400 chr5D 90.310 258 18 5 1615 1869 232412398 232412145 5.400000e-87 331.0
33 TraesCS7D01G554400 chr2D 89.098 266 22 5 1618 1881 310541031 310540771 9.040000e-85 324.0
34 TraesCS7D01G554400 chr5B 84.524 84 13 0 2227 2310 20822330 20822247 1.670000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G554400 chr7D 638329471 638332088 2617 True 4835.000000 4835 100.000000 1 2618 1 chr7D.!!$R3 2617
1 TraesCS7D01G554400 chr7D 638381573 638382125 552 True 309.000000 309 77.500000 1083 1620 1 chr7D.!!$R4 537
2 TraesCS7D01G554400 chr7A 727720994 727723573 2579 False 645.000000 1116 90.843750 1 2618 4 chr7A.!!$F4 2617
3 TraesCS7D01G554400 chr7A 727606913 727608170 1257 False 361.333333 542 90.942000 3 2618 3 chr7A.!!$F3 2615
4 TraesCS7D01G554400 chr7A 727692462 727692978 516 False 230.000000 230 75.422000 1086 1602 1 chr7A.!!$F2 516
5 TraesCS7D01G554400 chr7B 734378892 734380973 2081 False 672.333333 1029 87.710667 113 2543 3 chr7B.!!$F2 2430
6 TraesCS7D01G554400 chr7B 734407493 734408335 842 False 606.000000 606 80.231000 753 1592 1 chr7B.!!$F1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 578 0.168788 CGATCAAAGTTGGCACGCAT 59.831 50.0 0.0 0.0 0.0 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1930 0.03101 AGATACCCACACCCCTCTCC 60.031 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.742372 GCAGACGGATGCGGTGTT 60.742 61.111 12.44 0.00 36.28 3.32
35 36 1.209127 GATGCGGTGTTCGGTTTGG 59.791 57.895 0.00 0.00 39.69 3.28
44 45 0.818040 GTTCGGTTTGGGTGTCAGCT 60.818 55.000 1.41 0.00 0.00 4.24
66 67 4.519906 TTGGAGATTCCTTTATGTCCCC 57.480 45.455 0.00 0.00 37.20 4.81
178 179 0.179094 TTCGCCGATCCGCTTTACAT 60.179 50.000 4.53 0.00 0.00 2.29
200 201 3.120321 ACGAAATGAGTTGGCACTACA 57.880 42.857 0.00 0.00 31.22 2.74
204 205 4.688879 CGAAATGAGTTGGCACTACAAGTA 59.311 41.667 0.00 0.00 34.32 2.24
287 294 6.735678 TCACACACACAAATATACATGGTC 57.264 37.500 0.00 0.00 0.00 4.02
299 306 1.765230 ACATGGTCGGTCTCTAGGAC 58.235 55.000 0.00 3.50 43.79 3.85
338 489 1.434188 ACTCCACCACTGATCACCAA 58.566 50.000 0.00 0.00 0.00 3.67
356 507 3.381272 ACCAAAGTGTCACACCAAATGAG 59.619 43.478 3.66 0.00 34.49 2.90
409 560 3.118884 TGGTACTAAGCTAAAAGGAGCCG 60.119 47.826 0.00 0.00 43.97 5.52
420 571 1.826385 AAGGAGCCGATCAAAGTTGG 58.174 50.000 0.00 0.00 0.00 3.77
423 574 4.868195 GCCGATCAAAGTTGGCAC 57.132 55.556 2.54 0.00 46.19 5.01
426 577 1.573932 CGATCAAAGTTGGCACGCA 59.426 52.632 0.00 0.00 0.00 5.24
427 578 0.168788 CGATCAAAGTTGGCACGCAT 59.831 50.000 0.00 0.00 0.00 4.73
428 579 1.791555 CGATCAAAGTTGGCACGCATC 60.792 52.381 0.00 0.00 0.00 3.91
429 580 1.470098 GATCAAAGTTGGCACGCATCT 59.530 47.619 0.00 0.00 0.00 2.90
430 581 2.177394 TCAAAGTTGGCACGCATCTA 57.823 45.000 0.00 0.00 0.00 1.98
431 582 2.710377 TCAAAGTTGGCACGCATCTAT 58.290 42.857 0.00 0.00 0.00 1.98
432 583 3.867857 TCAAAGTTGGCACGCATCTATA 58.132 40.909 0.00 0.00 0.00 1.31
433 584 4.450976 TCAAAGTTGGCACGCATCTATAT 58.549 39.130 0.00 0.00 0.00 0.86
434 585 4.511454 TCAAAGTTGGCACGCATCTATATC 59.489 41.667 0.00 0.00 0.00 1.63
435 586 4.342862 AAGTTGGCACGCATCTATATCT 57.657 40.909 0.00 0.00 0.00 1.98
436 587 5.468540 AAGTTGGCACGCATCTATATCTA 57.531 39.130 0.00 0.00 0.00 1.98
437 588 5.667539 AGTTGGCACGCATCTATATCTAT 57.332 39.130 0.00 0.00 0.00 1.98
438 589 6.775594 AGTTGGCACGCATCTATATCTATA 57.224 37.500 0.00 0.00 0.00 1.31
439 590 6.565234 AGTTGGCACGCATCTATATCTATAC 58.435 40.000 0.00 0.00 0.00 1.47
440 591 5.515797 TGGCACGCATCTATATCTATACC 57.484 43.478 0.00 0.00 0.00 2.73
441 592 4.953579 TGGCACGCATCTATATCTATACCA 59.046 41.667 0.00 0.00 0.00 3.25
442 593 5.420739 TGGCACGCATCTATATCTATACCAA 59.579 40.000 0.00 0.00 0.00 3.67
443 594 6.098266 TGGCACGCATCTATATCTATACCAAT 59.902 38.462 0.00 0.00 0.00 3.16
444 595 7.286775 TGGCACGCATCTATATCTATACCAATA 59.713 37.037 0.00 0.00 0.00 1.90
445 596 8.307483 GGCACGCATCTATATCTATACCAATAT 58.693 37.037 0.00 0.00 0.00 1.28
461 612 6.544928 ACCAATATAAAAAGCTCCAAAGGG 57.455 37.500 0.00 0.00 0.00 3.95
462 613 6.260663 ACCAATATAAAAAGCTCCAAAGGGA 58.739 36.000 0.00 0.00 42.29 4.20
463 614 6.154534 ACCAATATAAAAAGCTCCAAAGGGAC 59.845 38.462 0.00 0.00 38.64 4.46
464 615 6.154363 CCAATATAAAAAGCTCCAAAGGGACA 59.846 38.462 0.00 0.00 38.64 4.02
465 616 7.260603 CAATATAAAAAGCTCCAAAGGGACAG 58.739 38.462 0.00 0.00 38.64 3.51
466 617 3.312736 AAAAAGCTCCAAAGGGACAGA 57.687 42.857 0.00 0.00 38.64 3.41
467 618 3.532641 AAAAGCTCCAAAGGGACAGAT 57.467 42.857 0.00 0.00 38.64 2.90
468 619 2.797177 AAGCTCCAAAGGGACAGATC 57.203 50.000 0.00 0.00 38.64 2.75
469 620 0.915364 AGCTCCAAAGGGACAGATCC 59.085 55.000 0.00 0.00 45.42 3.36
481 632 4.428294 GGACAGATCCAATCCATCTCAA 57.572 45.455 3.22 0.00 45.47 3.02
482 633 4.133078 GGACAGATCCAATCCATCTCAAC 58.867 47.826 3.22 0.00 45.47 3.18
483 634 4.133078 GACAGATCCAATCCATCTCAACC 58.867 47.826 0.00 0.00 0.00 3.77
484 635 3.136763 CAGATCCAATCCATCTCAACCG 58.863 50.000 0.00 0.00 0.00 4.44
485 636 2.774234 AGATCCAATCCATCTCAACCGT 59.226 45.455 0.00 0.00 0.00 4.83
486 637 2.691409 TCCAATCCATCTCAACCGTC 57.309 50.000 0.00 0.00 0.00 4.79
487 638 1.905894 TCCAATCCATCTCAACCGTCA 59.094 47.619 0.00 0.00 0.00 4.35
488 639 2.304470 TCCAATCCATCTCAACCGTCAA 59.696 45.455 0.00 0.00 0.00 3.18
489 640 3.081061 CCAATCCATCTCAACCGTCAAA 58.919 45.455 0.00 0.00 0.00 2.69
490 641 3.696051 CCAATCCATCTCAACCGTCAAAT 59.304 43.478 0.00 0.00 0.00 2.32
491 642 4.201950 CCAATCCATCTCAACCGTCAAATC 60.202 45.833 0.00 0.00 0.00 2.17
492 643 3.694043 TCCATCTCAACCGTCAAATCA 57.306 42.857 0.00 0.00 0.00 2.57
493 644 4.220693 TCCATCTCAACCGTCAAATCAT 57.779 40.909 0.00 0.00 0.00 2.45
494 645 3.940852 TCCATCTCAACCGTCAAATCATG 59.059 43.478 0.00 0.00 0.00 3.07
495 646 3.691118 CCATCTCAACCGTCAAATCATGT 59.309 43.478 0.00 0.00 0.00 3.21
496 647 4.437794 CCATCTCAACCGTCAAATCATGTG 60.438 45.833 0.00 0.00 0.00 3.21
497 648 4.001618 TCTCAACCGTCAAATCATGTGA 57.998 40.909 0.00 0.00 0.00 3.58
498 649 4.578871 TCTCAACCGTCAAATCATGTGAT 58.421 39.130 0.00 0.00 36.07 3.06
499 650 4.631377 TCTCAACCGTCAAATCATGTGATC 59.369 41.667 0.00 0.00 32.75 2.92
500 651 4.578871 TCAACCGTCAAATCATGTGATCT 58.421 39.130 0.00 0.00 32.75 2.75
501 652 5.729510 TCAACCGTCAAATCATGTGATCTA 58.270 37.500 0.00 0.00 32.75 1.98
502 653 5.812127 TCAACCGTCAAATCATGTGATCTAG 59.188 40.000 0.00 0.00 32.75 2.43
503 654 4.122776 ACCGTCAAATCATGTGATCTAGC 58.877 43.478 0.00 0.00 32.75 3.42
504 655 3.183172 CCGTCAAATCATGTGATCTAGCG 59.817 47.826 0.00 0.76 32.75 4.26
505 656 3.183172 CGTCAAATCATGTGATCTAGCGG 59.817 47.826 0.00 0.00 32.75 5.52
506 657 4.122776 GTCAAATCATGTGATCTAGCGGT 58.877 43.478 0.00 0.00 32.75 5.68
507 658 4.572389 GTCAAATCATGTGATCTAGCGGTT 59.428 41.667 0.00 0.00 32.75 4.44
508 659 4.811024 TCAAATCATGTGATCTAGCGGTTC 59.189 41.667 0.00 0.00 32.75 3.62
509 660 4.406648 AATCATGTGATCTAGCGGTTCA 57.593 40.909 0.00 0.00 32.75 3.18
510 661 3.885724 TCATGTGATCTAGCGGTTCAA 57.114 42.857 0.00 0.00 0.00 2.69
511 662 4.200838 TCATGTGATCTAGCGGTTCAAA 57.799 40.909 0.00 0.00 0.00 2.69
512 663 4.769688 TCATGTGATCTAGCGGTTCAAAT 58.230 39.130 0.00 0.00 0.00 2.32
513 664 4.811024 TCATGTGATCTAGCGGTTCAAATC 59.189 41.667 0.00 0.00 0.00 2.17
514 665 3.186909 TGTGATCTAGCGGTTCAAATCG 58.813 45.455 0.00 0.00 35.16 3.34
523 674 3.201726 CGGTTCAAATCGCTTCAATGT 57.798 42.857 0.00 0.00 0.00 2.71
524 675 3.564511 CGGTTCAAATCGCTTCAATGTT 58.435 40.909 0.00 0.00 0.00 2.71
525 676 3.361644 CGGTTCAAATCGCTTCAATGTTG 59.638 43.478 0.00 0.00 0.00 3.33
526 677 4.545610 GGTTCAAATCGCTTCAATGTTGA 58.454 39.130 0.00 0.00 34.92 3.18
527 678 4.618489 GGTTCAAATCGCTTCAATGTTGAG 59.382 41.667 0.00 0.00 38.61 3.02
528 679 3.825308 TCAAATCGCTTCAATGTTGAGC 58.175 40.909 0.00 2.30 38.61 4.26
529 680 3.252944 TCAAATCGCTTCAATGTTGAGCA 59.747 39.130 13.55 5.58 38.61 4.26
530 681 2.907910 ATCGCTTCAATGTTGAGCAC 57.092 45.000 13.55 0.00 38.61 4.40
531 682 0.874390 TCGCTTCAATGTTGAGCACC 59.126 50.000 13.55 0.00 38.61 5.01
532 683 0.592637 CGCTTCAATGTTGAGCACCA 59.407 50.000 13.55 0.00 38.61 4.17
533 684 1.001487 CGCTTCAATGTTGAGCACCAA 60.001 47.619 13.55 0.00 38.61 3.67
534 685 2.543445 CGCTTCAATGTTGAGCACCAAA 60.543 45.455 13.55 0.00 38.61 3.28
535 686 2.796593 GCTTCAATGTTGAGCACCAAAC 59.203 45.455 10.31 0.00 38.61 2.93
536 687 3.737663 GCTTCAATGTTGAGCACCAAACA 60.738 43.478 10.31 0.00 38.61 2.83
537 688 3.435105 TCAATGTTGAGCACCAAACAC 57.565 42.857 0.00 0.00 36.36 3.32
538 689 2.118683 CAATGTTGAGCACCAAACACG 58.881 47.619 0.00 0.00 36.36 4.49
539 690 1.388547 ATGTTGAGCACCAAACACGT 58.611 45.000 0.00 0.00 36.36 4.49
540 691 1.169577 TGTTGAGCACCAAACACGTT 58.830 45.000 0.00 0.00 36.36 3.99
541 692 1.542030 TGTTGAGCACCAAACACGTTT 59.458 42.857 0.00 0.00 36.36 3.60
542 693 2.747989 TGTTGAGCACCAAACACGTTTA 59.252 40.909 0.00 0.00 36.36 2.01
543 694 3.190744 TGTTGAGCACCAAACACGTTTAA 59.809 39.130 0.00 0.00 36.36 1.52
544 695 3.408288 TGAGCACCAAACACGTTTAAC 57.592 42.857 0.00 0.00 0.00 2.01
545 696 2.747989 TGAGCACCAAACACGTTTAACA 59.252 40.909 0.00 0.00 0.00 2.41
546 697 3.103007 GAGCACCAAACACGTTTAACAC 58.897 45.455 0.00 0.00 0.00 3.32
547 698 2.750712 AGCACCAAACACGTTTAACACT 59.249 40.909 0.00 0.00 0.00 3.55
548 699 3.103007 GCACCAAACACGTTTAACACTC 58.897 45.455 0.00 0.00 0.00 3.51
549 700 3.181504 GCACCAAACACGTTTAACACTCT 60.182 43.478 0.00 0.00 0.00 3.24
550 701 4.034279 GCACCAAACACGTTTAACACTCTA 59.966 41.667 0.00 0.00 0.00 2.43
551 702 5.447548 GCACCAAACACGTTTAACACTCTAA 60.448 40.000 0.00 0.00 0.00 2.10
552 703 6.721321 CACCAAACACGTTTAACACTCTAAT 58.279 36.000 0.00 0.00 0.00 1.73
553 704 7.190871 CACCAAACACGTTTAACACTCTAATT 58.809 34.615 0.00 0.00 0.00 1.40
554 705 8.336806 CACCAAACACGTTTAACACTCTAATTA 58.663 33.333 0.00 0.00 0.00 1.40
555 706 9.059260 ACCAAACACGTTTAACACTCTAATTAT 57.941 29.630 0.00 0.00 0.00 1.28
556 707 9.887406 CCAAACACGTTTAACACTCTAATTATT 57.113 29.630 0.00 0.00 0.00 1.40
560 711 8.715088 ACACGTTTAACACTCTAATTATTCACC 58.285 33.333 0.00 0.00 0.00 4.02
561 712 8.173130 CACGTTTAACACTCTAATTATTCACCC 58.827 37.037 0.00 0.00 0.00 4.61
562 713 7.879160 ACGTTTAACACTCTAATTATTCACCCA 59.121 33.333 0.00 0.00 0.00 4.51
563 714 8.889717 CGTTTAACACTCTAATTATTCACCCAT 58.110 33.333 0.00 0.00 0.00 4.00
566 717 9.841295 TTAACACTCTAATTATTCACCCATACC 57.159 33.333 0.00 0.00 0.00 2.73
567 718 7.446106 ACACTCTAATTATTCACCCATACCA 57.554 36.000 0.00 0.00 0.00 3.25
568 719 8.045720 ACACTCTAATTATTCACCCATACCAT 57.954 34.615 0.00 0.00 0.00 3.55
569 720 8.502738 ACACTCTAATTATTCACCCATACCATT 58.497 33.333 0.00 0.00 0.00 3.16
570 721 8.786898 CACTCTAATTATTCACCCATACCATTG 58.213 37.037 0.00 0.00 0.00 2.82
571 722 7.944554 ACTCTAATTATTCACCCATACCATTGG 59.055 37.037 0.00 0.00 36.46 3.16
572 723 7.821566 TCTAATTATTCACCCATACCATTGGT 58.178 34.615 13.94 13.94 40.16 3.67
573 724 8.285891 TCTAATTATTCACCCATACCATTGGTT 58.714 33.333 14.78 0.00 37.09 3.67
574 725 9.581289 CTAATTATTCACCCATACCATTGGTTA 57.419 33.333 14.78 0.56 37.09 2.85
578 729 9.937876 TTATTCACCCATACCATTGGTTATAAA 57.062 29.630 14.78 0.00 37.09 1.40
579 730 7.648039 TTCACCCATACCATTGGTTATAAAC 57.352 36.000 14.78 0.00 37.09 2.01
580 731 6.732487 TCACCCATACCATTGGTTATAAACA 58.268 36.000 14.78 0.00 37.09 2.83
581 732 7.358263 TCACCCATACCATTGGTTATAAACAT 58.642 34.615 14.78 0.00 37.09 2.71
582 733 7.286546 TCACCCATACCATTGGTTATAAACATG 59.713 37.037 14.78 9.35 37.09 3.21
583 734 7.069331 CACCCATACCATTGGTTATAAACATGT 59.931 37.037 14.78 5.22 37.09 3.21
584 735 7.621683 ACCCATACCATTGGTTATAAACATGTT 59.378 33.333 14.78 4.92 37.09 2.71
585 736 8.482128 CCCATACCATTGGTTATAAACATGTTT 58.518 33.333 25.99 25.99 37.09 2.83
590 741 9.528489 ACCATTGGTTATAAACATGTTTAGACT 57.472 29.630 29.25 18.65 33.60 3.24
595 746 9.562408 TGGTTATAAACATGTTTAGACTCAACA 57.438 29.630 29.25 19.04 38.30 3.33
596 747 9.821662 GGTTATAAACATGTTTAGACTCAACAC 57.178 33.333 29.25 20.05 38.30 3.32
597 748 9.821662 GTTATAAACATGTTTAGACTCAACACC 57.178 33.333 29.25 9.72 38.30 4.16
598 749 9.562408 TTATAAACATGTTTAGACTCAACACCA 57.438 29.630 29.25 9.92 38.30 4.17
599 750 6.959639 AAACATGTTTAGACTCAACACCAT 57.040 33.333 22.10 0.00 36.97 3.55
600 751 6.560253 AACATGTTTAGACTCAACACCATC 57.440 37.500 4.92 0.00 36.97 3.51
601 752 5.003804 ACATGTTTAGACTCAACACCATCC 58.996 41.667 4.36 0.00 36.97 3.51
602 753 4.974645 TGTTTAGACTCAACACCATCCT 57.025 40.909 0.00 0.00 0.00 3.24
603 754 6.013725 ACATGTTTAGACTCAACACCATCCTA 60.014 38.462 4.36 0.00 36.97 2.94
604 755 6.620877 TGTTTAGACTCAACACCATCCTAT 57.379 37.500 0.00 0.00 0.00 2.57
605 756 6.406370 TGTTTAGACTCAACACCATCCTATG 58.594 40.000 0.00 0.00 0.00 2.23
606 757 6.212589 TGTTTAGACTCAACACCATCCTATGA 59.787 38.462 0.00 0.00 0.00 2.15
607 758 6.867519 TTAGACTCAACACCATCCTATGAA 57.132 37.500 0.00 0.00 0.00 2.57
608 759 5.762179 AGACTCAACACCATCCTATGAAA 57.238 39.130 0.00 0.00 0.00 2.69
609 760 6.319048 AGACTCAACACCATCCTATGAAAT 57.681 37.500 0.00 0.00 0.00 2.17
610 761 6.352516 AGACTCAACACCATCCTATGAAATC 58.647 40.000 0.00 0.00 0.00 2.17
611 762 6.157645 AGACTCAACACCATCCTATGAAATCT 59.842 38.462 0.00 0.00 0.00 2.40
612 763 6.118170 ACTCAACACCATCCTATGAAATCTG 58.882 40.000 0.00 0.00 0.00 2.90
613 764 4.883585 TCAACACCATCCTATGAAATCTGC 59.116 41.667 0.00 0.00 0.00 4.26
614 765 3.825328 ACACCATCCTATGAAATCTGCC 58.175 45.455 0.00 0.00 0.00 4.85
615 766 3.202818 ACACCATCCTATGAAATCTGCCA 59.797 43.478 0.00 0.00 0.00 4.92
616 767 4.141088 ACACCATCCTATGAAATCTGCCAT 60.141 41.667 0.00 0.00 0.00 4.40
617 768 4.217767 CACCATCCTATGAAATCTGCCATG 59.782 45.833 0.00 0.00 0.00 3.66
618 769 4.141088 ACCATCCTATGAAATCTGCCATGT 60.141 41.667 0.00 0.00 0.00 3.21
619 770 5.073554 ACCATCCTATGAAATCTGCCATGTA 59.926 40.000 0.00 0.00 0.00 2.29
620 771 6.005823 CCATCCTATGAAATCTGCCATGTAA 58.994 40.000 0.00 0.00 0.00 2.41
621 772 6.662234 CCATCCTATGAAATCTGCCATGTAAT 59.338 38.462 0.00 0.00 0.00 1.89
622 773 7.177921 CCATCCTATGAAATCTGCCATGTAATT 59.822 37.037 0.00 0.00 0.00 1.40
623 774 9.234827 CATCCTATGAAATCTGCCATGTAATTA 57.765 33.333 0.00 0.00 0.00 1.40
624 775 9.812347 ATCCTATGAAATCTGCCATGTAATTAA 57.188 29.630 0.00 0.00 0.00 1.40
625 776 9.812347 TCCTATGAAATCTGCCATGTAATTAAT 57.188 29.630 0.00 0.00 0.00 1.40
641 792 8.556213 TGTAATTAATATCTTACCATTCCCGC 57.444 34.615 0.00 0.00 0.00 6.13
642 793 6.737254 AATTAATATCTTACCATTCCCGCG 57.263 37.500 0.00 0.00 0.00 6.46
643 794 5.471556 TTAATATCTTACCATTCCCGCGA 57.528 39.130 8.23 0.00 0.00 5.87
644 795 4.345859 AATATCTTACCATTCCCGCGAA 57.654 40.909 8.23 0.00 0.00 4.70
645 796 2.240493 ATCTTACCATTCCCGCGAAG 57.760 50.000 8.23 0.00 0.00 3.79
646 797 1.187974 TCTTACCATTCCCGCGAAGA 58.812 50.000 8.23 2.59 0.00 2.87
647 798 1.551430 TCTTACCATTCCCGCGAAGAA 59.449 47.619 8.23 11.21 0.00 2.52
648 799 2.027929 TCTTACCATTCCCGCGAAGAAA 60.028 45.455 8.23 0.00 0.00 2.52
649 800 2.018542 TACCATTCCCGCGAAGAAAG 57.981 50.000 8.23 7.40 0.00 2.62
650 801 1.305930 ACCATTCCCGCGAAGAAAGC 61.306 55.000 8.23 0.00 0.00 3.51
651 802 1.305219 CCATTCCCGCGAAGAAAGCA 61.305 55.000 8.23 0.00 34.19 3.91
652 803 0.521291 CATTCCCGCGAAGAAAGCAA 59.479 50.000 8.23 0.00 34.19 3.91
653 804 1.133025 CATTCCCGCGAAGAAAGCAAT 59.867 47.619 8.23 0.00 34.19 3.56
654 805 1.243902 TTCCCGCGAAGAAAGCAATT 58.756 45.000 8.23 0.00 34.19 2.32
655 806 2.102070 TCCCGCGAAGAAAGCAATTA 57.898 45.000 8.23 0.00 34.19 1.40
656 807 2.428491 TCCCGCGAAGAAAGCAATTAA 58.572 42.857 8.23 0.00 34.19 1.40
657 808 3.013921 TCCCGCGAAGAAAGCAATTAAT 58.986 40.909 8.23 0.00 34.19 1.40
658 809 4.193090 TCCCGCGAAGAAAGCAATTAATA 58.807 39.130 8.23 0.00 34.19 0.98
659 810 4.819630 TCCCGCGAAGAAAGCAATTAATAT 59.180 37.500 8.23 0.00 34.19 1.28
660 811 5.049680 TCCCGCGAAGAAAGCAATTAATATC 60.050 40.000 8.23 0.00 34.19 1.63
661 812 5.049405 CCCGCGAAGAAAGCAATTAATATCT 60.049 40.000 8.23 0.00 34.19 1.98
662 813 6.430451 CCGCGAAGAAAGCAATTAATATCTT 58.570 36.000 8.23 0.00 34.19 2.40
663 814 7.307751 CCCGCGAAGAAAGCAATTAATATCTTA 60.308 37.037 8.23 0.00 34.19 2.10
664 815 7.530861 CCGCGAAGAAAGCAATTAATATCTTAC 59.469 37.037 8.23 0.00 34.19 2.34
665 816 7.530861 CGCGAAGAAAGCAATTAATATCTTACC 59.469 37.037 0.00 0.00 34.19 2.85
666 817 8.342634 GCGAAGAAAGCAATTAATATCTTACCA 58.657 33.333 0.00 0.00 34.19 3.25
681 832 8.938801 ATATCTTACCAAATATCAATGTGCCA 57.061 30.769 0.00 0.00 0.00 4.92
682 833 6.449635 TCTTACCAAATATCAATGTGCCAC 57.550 37.500 0.00 0.00 0.00 5.01
683 834 5.948758 TCTTACCAAATATCAATGTGCCACA 59.051 36.000 0.00 0.00 0.00 4.17
684 835 6.435591 TCTTACCAAATATCAATGTGCCACAA 59.564 34.615 0.00 0.00 0.00 3.33
685 836 5.480642 ACCAAATATCAATGTGCCACAAA 57.519 34.783 0.00 0.00 0.00 2.83
686 837 6.052405 ACCAAATATCAATGTGCCACAAAT 57.948 33.333 0.00 0.00 0.00 2.32
687 838 7.180322 ACCAAATATCAATGTGCCACAAATA 57.820 32.000 0.00 1.08 0.00 1.40
688 839 7.794041 ACCAAATATCAATGTGCCACAAATAT 58.206 30.769 0.00 3.48 0.00 1.28
689 840 8.922237 ACCAAATATCAATGTGCCACAAATATA 58.078 29.630 0.00 0.30 0.00 0.86
690 841 9.195411 CCAAATATCAATGTGCCACAAATATAC 57.805 33.333 0.00 0.00 0.00 1.47
691 842 9.195411 CAAATATCAATGTGCCACAAATATACC 57.805 33.333 0.00 0.00 0.00 2.73
692 843 8.710749 AATATCAATGTGCCACAAATATACCT 57.289 30.769 0.00 0.00 0.00 3.08
693 844 8.710749 ATATCAATGTGCCACAAATATACCTT 57.289 30.769 0.00 0.00 0.00 3.50
694 845 9.806448 ATATCAATGTGCCACAAATATACCTTA 57.194 29.630 0.00 0.00 0.00 2.69
695 846 8.710749 ATCAATGTGCCACAAATATACCTTAT 57.289 30.769 0.00 0.00 0.00 1.73
696 847 8.532186 TCAATGTGCCACAAATATACCTTATT 57.468 30.769 0.00 0.00 0.00 1.40
697 848 8.976353 TCAATGTGCCACAAATATACCTTATTT 58.024 29.630 0.00 0.00 0.00 1.40
715 866 9.835389 ACCTTATTTAATATAACGTGCCACTAA 57.165 29.630 0.00 0.00 0.00 2.24
724 875 4.332428 AACGTGCCACTAATATCCTACC 57.668 45.455 0.00 0.00 0.00 3.18
725 876 3.573695 ACGTGCCACTAATATCCTACCT 58.426 45.455 0.00 0.00 0.00 3.08
726 877 4.733165 ACGTGCCACTAATATCCTACCTA 58.267 43.478 0.00 0.00 0.00 3.08
727 878 5.142639 ACGTGCCACTAATATCCTACCTAA 58.857 41.667 0.00 0.00 0.00 2.69
728 879 5.778750 ACGTGCCACTAATATCCTACCTAAT 59.221 40.000 0.00 0.00 0.00 1.73
729 880 6.950041 ACGTGCCACTAATATCCTACCTAATA 59.050 38.462 0.00 0.00 0.00 0.98
730 881 7.094032 ACGTGCCACTAATATCCTACCTAATAC 60.094 40.741 0.00 0.00 0.00 1.89
731 882 7.256286 GTGCCACTAATATCCTACCTAATACG 58.744 42.308 0.00 0.00 0.00 3.06
732 883 6.950041 TGCCACTAATATCCTACCTAATACGT 59.050 38.462 0.00 0.00 0.00 3.57
733 884 7.094075 TGCCACTAATATCCTACCTAATACGTG 60.094 40.741 0.00 0.00 0.00 4.49
734 885 7.256286 CCACTAATATCCTACCTAATACGTGC 58.744 42.308 0.00 0.00 0.00 5.34
735 886 7.094075 CCACTAATATCCTACCTAATACGTGCA 60.094 40.741 0.00 0.00 0.00 4.57
736 887 8.301720 CACTAATATCCTACCTAATACGTGCAA 58.698 37.037 0.00 0.00 0.00 4.08
737 888 9.032624 ACTAATATCCTACCTAATACGTGCAAT 57.967 33.333 0.00 0.00 0.00 3.56
738 889 9.302345 CTAATATCCTACCTAATACGTGCAATG 57.698 37.037 0.00 0.00 0.00 2.82
739 890 3.724374 TCCTACCTAATACGTGCAATGC 58.276 45.455 0.00 0.00 0.00 3.56
740 891 3.133183 TCCTACCTAATACGTGCAATGCA 59.867 43.478 2.72 2.72 35.60 3.96
799 963 2.186903 CACGCCCGCCACTAATCT 59.813 61.111 0.00 0.00 0.00 2.40
884 1058 1.567175 GCCCCTCCACCCTATAAAACA 59.433 52.381 0.00 0.00 0.00 2.83
902 1076 1.744368 ACCAAGCAGAGCATCGCAG 60.744 57.895 0.00 0.00 42.67 5.18
905 1079 0.740164 CAAGCAGAGCATCGCAGACT 60.740 55.000 0.00 0.00 42.51 3.24
941 1115 4.826556 ACCAGAGTCAAAGCTAAGCTAAG 58.173 43.478 0.00 0.00 38.25 2.18
953 1127 5.701224 AGCTAAGCTAAGATACAGAGTCCT 58.299 41.667 0.00 0.00 36.99 3.85
959 1133 4.024387 GCTAAGATACAGAGTCCTCAGTCG 60.024 50.000 0.00 0.00 31.64 4.18
989 1164 2.400962 CGCACCATAGCAGCAGCAA 61.401 57.895 3.17 0.00 45.49 3.91
994 1169 0.179119 CCATAGCAGCAGCAAAAGCC 60.179 55.000 3.17 0.00 45.49 4.35
1023 1198 3.453679 GCTCCGCCGAGTCTCCTT 61.454 66.667 3.98 0.00 38.49 3.36
1032 1207 1.507174 GAGTCTCCTTCACCGGACG 59.493 63.158 9.46 0.00 34.34 4.79
1038 1213 4.016706 CTTCACCGGACGGCCCTT 62.017 66.667 9.46 0.00 39.32 3.95
1067 1245 2.047274 CACCGGCCAGACATCGTT 60.047 61.111 0.00 0.00 0.00 3.85
1068 1246 1.216977 CACCGGCCAGACATCGTTA 59.783 57.895 0.00 0.00 0.00 3.18
1075 1259 2.545952 GGCCAGACATCGTTATCGTCAT 60.546 50.000 0.00 0.00 38.33 3.06
1164 1348 2.860628 GCTCCTATGCGCGTTCGTG 61.861 63.158 7.78 0.19 38.14 4.35
1179 1363 3.357079 GTGTGCGTCCTTGGCCTG 61.357 66.667 3.32 0.00 0.00 4.85
1242 1426 1.454111 ATCCTCCGACCACTCTCCG 60.454 63.158 0.00 0.00 0.00 4.63
1293 1477 1.518572 CGATGCGCTTCCTACCGTT 60.519 57.895 16.74 0.00 0.00 4.44
1295 1479 1.084289 GATGCGCTTCCTACCGTTTT 58.916 50.000 9.73 0.00 0.00 2.43
1299 1483 1.534163 GCGCTTCCTACCGTTTTCTTT 59.466 47.619 0.00 0.00 0.00 2.52
1319 1506 4.735132 CGCCACCGCTTCTCCGAA 62.735 66.667 0.00 0.00 0.00 4.30
1353 1558 1.153745 GTCCTCTGAGTGCGCGATT 60.154 57.895 12.10 0.00 0.00 3.34
1493 1698 1.223487 CCCCCATCATCGTTTCCGT 59.777 57.895 0.00 0.00 35.01 4.69
1500 1705 1.446445 CATCGTTTCCGTGCCCGTA 60.446 57.895 0.00 0.00 35.01 4.02
1543 1751 2.281208 TGGTTGTAGTGGCGGCAC 60.281 61.111 32.77 32.77 0.00 5.01
1551 1759 0.899019 TAGTGGCGGCACACAATAGA 59.101 50.000 38.86 15.17 43.72 1.98
1620 1828 1.972795 ACCACGGTCTTGCCTTAACTA 59.027 47.619 0.00 0.00 34.25 2.24
1621 1829 2.028385 ACCACGGTCTTGCCTTAACTAG 60.028 50.000 0.00 0.00 34.25 2.57
1622 1830 2.000447 CACGGTCTTGCCTTAACTAGC 59.000 52.381 0.00 0.00 34.25 3.42
1623 1831 1.621814 ACGGTCTTGCCTTAACTAGCA 59.378 47.619 0.00 0.00 37.18 3.49
1624 1832 2.038033 ACGGTCTTGCCTTAACTAGCAA 59.962 45.455 0.00 0.00 46.26 3.91
1630 1838 2.643551 TGCCTTAACTAGCAAGATGCC 58.356 47.619 6.31 0.00 46.52 4.40
1631 1839 1.950216 GCCTTAACTAGCAAGATGCCC 59.050 52.381 6.31 0.00 46.52 5.36
1632 1840 2.683742 GCCTTAACTAGCAAGATGCCCA 60.684 50.000 6.31 0.00 46.52 5.36
1633 1841 3.825328 CCTTAACTAGCAAGATGCCCAT 58.175 45.455 6.31 0.00 46.52 4.00
1634 1842 3.567164 CCTTAACTAGCAAGATGCCCATG 59.433 47.826 6.31 0.00 46.52 3.66
1635 1843 1.396653 AACTAGCAAGATGCCCATGC 58.603 50.000 0.00 0.00 46.52 4.06
1636 1844 0.816825 ACTAGCAAGATGCCCATGCG 60.817 55.000 0.00 0.00 46.52 4.73
1637 1845 0.816825 CTAGCAAGATGCCCATGCGT 60.817 55.000 0.00 0.00 46.52 5.24
1638 1846 0.394216 TAGCAAGATGCCCATGCGTT 60.394 50.000 0.00 0.00 46.52 4.84
1639 1847 1.517694 GCAAGATGCCCATGCGTTG 60.518 57.895 0.00 0.00 41.78 4.10
1640 1848 1.517694 CAAGATGCCCATGCGTTGC 60.518 57.895 0.00 0.00 41.78 4.17
1641 1849 1.978080 AAGATGCCCATGCGTTGCA 60.978 52.632 2.57 2.57 44.86 4.08
1642 1850 2.202650 GATGCCCATGCGTTGCAC 60.203 61.111 2.13 0.00 43.04 4.57
1643 1851 4.118995 ATGCCCATGCGTTGCACG 62.119 61.111 2.13 4.61 43.04 5.34
1646 1854 3.361158 CCCATGCGTTGCACGGAA 61.361 61.111 5.32 0.00 45.44 4.30
1647 1855 2.126888 CCATGCGTTGCACGGAAC 60.127 61.111 0.00 0.00 45.44 3.62
1648 1856 2.616330 CCATGCGTTGCACGGAACT 61.616 57.895 0.00 0.00 45.44 3.01
1649 1857 1.282570 CATGCGTTGCACGGAACTT 59.717 52.632 6.93 0.00 46.78 2.66
1650 1858 0.725784 CATGCGTTGCACGGAACTTC 60.726 55.000 6.93 0.00 46.78 3.01
1651 1859 1.163420 ATGCGTTGCACGGAACTTCA 61.163 50.000 6.93 0.00 46.78 3.02
1652 1860 1.353804 GCGTTGCACGGAACTTCAA 59.646 52.632 10.02 0.00 42.82 2.69
1653 1861 0.657368 GCGTTGCACGGAACTTCAAG 60.657 55.000 10.02 0.00 42.82 3.02
1654 1862 0.934496 CGTTGCACGGAACTTCAAGA 59.066 50.000 0.00 0.00 38.08 3.02
1655 1863 1.531149 CGTTGCACGGAACTTCAAGAT 59.469 47.619 0.00 0.00 38.08 2.40
1656 1864 2.662791 CGTTGCACGGAACTTCAAGATG 60.663 50.000 0.00 0.00 38.08 2.90
1657 1865 0.874390 TGCACGGAACTTCAAGATGC 59.126 50.000 0.00 0.00 0.00 3.91
1658 1866 0.874390 GCACGGAACTTCAAGATGCA 59.126 50.000 0.00 0.00 0.00 3.96
1659 1867 1.470098 GCACGGAACTTCAAGATGCAT 59.530 47.619 0.00 0.00 0.00 3.96
1660 1868 2.095059 GCACGGAACTTCAAGATGCATT 60.095 45.455 0.00 0.00 0.00 3.56
1661 1869 3.612479 GCACGGAACTTCAAGATGCATTT 60.612 43.478 0.00 0.00 0.00 2.32
1662 1870 3.916172 CACGGAACTTCAAGATGCATTTG 59.084 43.478 0.00 7.88 0.00 2.32
1663 1871 3.569701 ACGGAACTTCAAGATGCATTTGT 59.430 39.130 0.00 0.00 0.00 2.83
1664 1872 4.759693 ACGGAACTTCAAGATGCATTTGTA 59.240 37.500 0.00 1.19 0.00 2.41
1665 1873 5.415701 ACGGAACTTCAAGATGCATTTGTAT 59.584 36.000 0.00 0.00 0.00 2.29
1666 1874 5.740569 CGGAACTTCAAGATGCATTTGTATG 59.259 40.000 0.00 5.52 34.76 2.39
1667 1875 6.403527 CGGAACTTCAAGATGCATTTGTATGA 60.404 38.462 0.00 0.00 33.37 2.15
1668 1876 7.315142 GGAACTTCAAGATGCATTTGTATGAA 58.685 34.615 0.00 6.97 33.37 2.57
1669 1877 7.977853 GGAACTTCAAGATGCATTTGTATGAAT 59.022 33.333 0.00 0.00 32.35 2.57
1672 1880 9.182214 ACTTCAAGATGCATTTGTATGAATAGT 57.818 29.630 0.00 1.07 29.63 2.12
1682 1890 9.833894 GCATTTGTATGAATAGTTTATTTTGCG 57.166 29.630 0.00 0.00 33.37 4.85
1684 1892 8.918961 TTTGTATGAATAGTTTATTTTGCGGG 57.081 30.769 0.00 0.00 0.00 6.13
1685 1893 7.867305 TGTATGAATAGTTTATTTTGCGGGA 57.133 32.000 0.00 0.00 0.00 5.14
1686 1894 7.925993 TGTATGAATAGTTTATTTTGCGGGAG 58.074 34.615 0.00 0.00 0.00 4.30
1687 1895 7.771361 TGTATGAATAGTTTATTTTGCGGGAGA 59.229 33.333 0.00 0.00 0.00 3.71
1688 1896 7.639113 ATGAATAGTTTATTTTGCGGGAGAA 57.361 32.000 0.00 0.00 0.00 2.87
1689 1897 7.455641 TGAATAGTTTATTTTGCGGGAGAAA 57.544 32.000 0.00 0.00 0.00 2.52
1690 1898 7.887381 TGAATAGTTTATTTTGCGGGAGAAAA 58.113 30.769 0.00 0.00 35.00 2.29
1691 1899 8.527810 TGAATAGTTTATTTTGCGGGAGAAAAT 58.472 29.630 0.00 0.00 37.20 1.82
1695 1903 8.702163 AGTTTATTTTGCGGGAGAAAATAATG 57.298 30.769 10.63 0.00 41.48 1.90
1696 1904 8.527810 AGTTTATTTTGCGGGAGAAAATAATGA 58.472 29.630 10.63 0.00 41.48 2.57
1697 1905 9.145865 GTTTATTTTGCGGGAGAAAATAATGAA 57.854 29.630 10.63 0.00 41.48 2.57
1698 1906 9.883142 TTTATTTTGCGGGAGAAAATAATGAAT 57.117 25.926 10.63 0.00 41.48 2.57
1699 1907 9.883142 TTATTTTGCGGGAGAAAATAATGAATT 57.117 25.926 0.00 0.00 39.02 2.17
1701 1909 8.925161 TTTTGCGGGAGAAAATAATGAATTAG 57.075 30.769 0.00 0.00 37.20 1.73
1702 1910 7.873719 TTGCGGGAGAAAATAATGAATTAGA 57.126 32.000 0.00 0.00 0.00 2.10
1703 1911 7.873719 TGCGGGAGAAAATAATGAATTAGAA 57.126 32.000 0.00 0.00 0.00 2.10
1704 1912 7.930217 TGCGGGAGAAAATAATGAATTAGAAG 58.070 34.615 0.00 0.00 0.00 2.85
1705 1913 7.773224 TGCGGGAGAAAATAATGAATTAGAAGA 59.227 33.333 0.00 0.00 0.00 2.87
1706 1914 8.070769 GCGGGAGAAAATAATGAATTAGAAGAC 58.929 37.037 0.00 0.00 0.00 3.01
1707 1915 8.560374 CGGGAGAAAATAATGAATTAGAAGACC 58.440 37.037 0.00 0.00 0.00 3.85
1708 1916 9.634021 GGGAGAAAATAATGAATTAGAAGACCT 57.366 33.333 0.00 0.00 0.00 3.85
1727 1935 4.708726 CCTTATTTGCAAAGGTGGAGAG 57.291 45.455 18.19 7.02 38.98 3.20
1728 1936 3.445096 CCTTATTTGCAAAGGTGGAGAGG 59.555 47.826 18.19 11.61 38.98 3.69
1729 1937 1.928868 ATTTGCAAAGGTGGAGAGGG 58.071 50.000 18.19 0.00 0.00 4.30
1730 1938 0.178964 TTTGCAAAGGTGGAGAGGGG 60.179 55.000 8.05 0.00 0.00 4.79
1731 1939 1.360393 TTGCAAAGGTGGAGAGGGGT 61.360 55.000 0.00 0.00 0.00 4.95
1732 1940 1.303643 GCAAAGGTGGAGAGGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
1733 1941 2.069165 GCAAAGGTGGAGAGGGGTGT 62.069 60.000 0.00 0.00 0.00 4.16
1734 1942 0.250901 CAAAGGTGGAGAGGGGTGTG 60.251 60.000 0.00 0.00 0.00 3.82
1735 1943 1.427072 AAAGGTGGAGAGGGGTGTGG 61.427 60.000 0.00 0.00 0.00 4.17
1736 1944 3.330720 GGTGGAGAGGGGTGTGGG 61.331 72.222 0.00 0.00 0.00 4.61
1737 1945 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
1738 1946 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
1739 1947 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
1740 1948 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
1741 1949 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
1742 1950 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
1743 1951 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
1744 1952 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
1745 1953 2.993863 AGAGGGGTGTGGGTATCTTTTT 59.006 45.455 0.00 0.00 0.00 1.94
1746 1954 3.089284 GAGGGGTGTGGGTATCTTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
1747 1955 1.548719 GGGGTGTGGGTATCTTTTTGC 59.451 52.381 0.00 0.00 0.00 3.68
1748 1956 2.243810 GGGTGTGGGTATCTTTTTGCA 58.756 47.619 0.00 0.00 0.00 4.08
1749 1957 2.630580 GGGTGTGGGTATCTTTTTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
1750 1958 3.070302 GGGTGTGGGTATCTTTTTGCAAA 59.930 43.478 8.05 8.05 0.00 3.68
1751 1959 4.443598 GGGTGTGGGTATCTTTTTGCAAAA 60.444 41.667 20.46 20.46 0.00 2.44
1752 1960 5.304778 GGTGTGGGTATCTTTTTGCAAAAT 58.695 37.500 24.39 12.94 0.00 1.82
1753 1961 5.762711 GGTGTGGGTATCTTTTTGCAAAATT 59.237 36.000 24.39 14.72 0.00 1.82
1754 1962 6.293353 GGTGTGGGTATCTTTTTGCAAAATTG 60.293 38.462 24.39 19.07 0.00 2.32
1755 1963 6.259829 GTGTGGGTATCTTTTTGCAAAATTGT 59.740 34.615 24.39 14.99 0.00 2.71
1756 1964 6.481644 TGTGGGTATCTTTTTGCAAAATTGTC 59.518 34.615 24.39 13.66 0.00 3.18
1757 1965 6.481644 GTGGGTATCTTTTTGCAAAATTGTCA 59.518 34.615 24.39 13.45 0.00 3.58
1758 1966 7.173047 GTGGGTATCTTTTTGCAAAATTGTCAT 59.827 33.333 24.39 13.84 0.00 3.06
1759 1967 8.370940 TGGGTATCTTTTTGCAAAATTGTCATA 58.629 29.630 24.39 12.99 0.00 2.15
1760 1968 9.213799 GGGTATCTTTTTGCAAAATTGTCATAA 57.786 29.630 24.39 6.94 0.00 1.90
1769 1977 7.903995 TGCAAAATTGTCATAATTTCCTTCC 57.096 32.000 0.00 0.00 0.00 3.46
1770 1978 7.678837 TGCAAAATTGTCATAATTTCCTTCCT 58.321 30.769 0.00 0.00 0.00 3.36
1771 1979 8.811017 TGCAAAATTGTCATAATTTCCTTCCTA 58.189 29.630 0.00 0.00 0.00 2.94
1772 1980 9.822185 GCAAAATTGTCATAATTTCCTTCCTAT 57.178 29.630 0.00 0.00 0.00 2.57
1775 1983 9.713684 AAATTGTCATAATTTCCTTCCTATCCA 57.286 29.630 0.00 0.00 0.00 3.41
1776 1984 9.887862 AATTGTCATAATTTCCTTCCTATCCAT 57.112 29.630 0.00 0.00 0.00 3.41
1777 1985 8.924511 TTGTCATAATTTCCTTCCTATCCATC 57.075 34.615 0.00 0.00 0.00 3.51
1778 1986 8.044574 TGTCATAATTTCCTTCCTATCCATCA 57.955 34.615 0.00 0.00 0.00 3.07
1779 1987 8.159447 TGTCATAATTTCCTTCCTATCCATCAG 58.841 37.037 0.00 0.00 0.00 2.90
1780 1988 8.378565 GTCATAATTTCCTTCCTATCCATCAGA 58.621 37.037 0.00 0.00 0.00 3.27
1781 1989 9.120658 TCATAATTTCCTTCCTATCCATCAGAT 57.879 33.333 0.00 0.00 39.15 2.90
1789 1997 8.918116 TCCTTCCTATCCATCAGATATAAATCG 58.082 37.037 0.00 0.00 36.84 3.34
1790 1998 8.147058 CCTTCCTATCCATCAGATATAAATCGG 58.853 40.741 0.00 0.00 36.84 4.18
1791 1999 8.838649 TTCCTATCCATCAGATATAAATCGGA 57.161 34.615 0.00 0.00 40.04 4.55
1792 2000 8.239038 TCCTATCCATCAGATATAAATCGGAC 57.761 38.462 0.00 0.00 38.83 4.79
1793 2001 7.013369 TCCTATCCATCAGATATAAATCGGACG 59.987 40.741 0.00 0.00 38.83 4.79
1794 2002 5.324784 TCCATCAGATATAAATCGGACGG 57.675 43.478 0.00 0.00 39.93 4.79
1795 2003 3.865745 CCATCAGATATAAATCGGACGGC 59.134 47.826 0.00 0.00 38.83 5.68
1796 2004 3.587797 TCAGATATAAATCGGACGGCC 57.412 47.619 0.00 0.00 37.19 6.13
1797 2005 3.162666 TCAGATATAAATCGGACGGCCT 58.837 45.455 5.33 0.00 37.19 5.19
1798 2006 4.338012 TCAGATATAAATCGGACGGCCTA 58.662 43.478 5.33 0.00 37.19 3.93
1799 2007 4.954202 TCAGATATAAATCGGACGGCCTAT 59.046 41.667 5.33 0.00 37.19 2.57
1800 2008 6.124340 TCAGATATAAATCGGACGGCCTATA 58.876 40.000 5.33 0.25 37.19 1.31
1801 2009 6.776116 TCAGATATAAATCGGACGGCCTATAT 59.224 38.462 5.33 6.08 37.19 0.86
1802 2010 7.287005 TCAGATATAAATCGGACGGCCTATATT 59.713 37.037 5.33 0.00 37.19 1.28
1803 2011 7.382488 CAGATATAAATCGGACGGCCTATATTG 59.618 40.741 5.33 4.36 37.19 1.90
1804 2012 2.094762 AATCGGACGGCCTATATTGC 57.905 50.000 5.33 0.00 0.00 3.56
1805 2013 0.973632 ATCGGACGGCCTATATTGCA 59.026 50.000 5.33 0.00 0.00 4.08
1806 2014 0.317160 TCGGACGGCCTATATTGCAG 59.683 55.000 5.33 0.00 0.00 4.41
1807 2015 0.670546 CGGACGGCCTATATTGCAGG 60.671 60.000 5.33 0.00 36.16 4.85
1808 2016 0.685097 GGACGGCCTATATTGCAGGA 59.315 55.000 0.00 0.00 34.91 3.86
1809 2017 1.279271 GGACGGCCTATATTGCAGGAT 59.721 52.381 0.00 0.00 34.91 3.24
1810 2018 2.350522 GACGGCCTATATTGCAGGATG 58.649 52.381 0.00 0.00 34.91 3.51
1811 2019 1.003580 ACGGCCTATATTGCAGGATGG 59.996 52.381 0.00 0.00 34.91 3.51
1812 2020 1.467920 GGCCTATATTGCAGGATGGC 58.532 55.000 0.00 10.13 34.91 4.40
1813 2021 1.272092 GGCCTATATTGCAGGATGGCA 60.272 52.381 17.22 0.00 43.19 4.92
1814 2022 2.089980 GCCTATATTGCAGGATGGCAG 58.910 52.381 12.68 0.00 45.88 4.85
1815 2023 2.290514 GCCTATATTGCAGGATGGCAGA 60.291 50.000 12.68 0.00 45.88 4.26
1816 2024 3.341823 CCTATATTGCAGGATGGCAGAC 58.658 50.000 0.00 0.00 45.88 3.51
1817 2025 3.244665 CCTATATTGCAGGATGGCAGACA 60.245 47.826 0.00 0.00 45.88 3.41
1818 2026 2.042686 TATTGCAGGATGGCAGACAC 57.957 50.000 0.00 0.00 45.88 3.67
1819 2027 0.038599 ATTGCAGGATGGCAGACACA 59.961 50.000 0.00 0.00 45.88 3.72
1820 2028 0.890542 TTGCAGGATGGCAGACACAC 60.891 55.000 0.00 0.00 45.88 3.82
1821 2029 2.042831 GCAGGATGGCAGACACACC 61.043 63.158 0.00 0.00 35.86 4.16
1822 2030 1.376086 CAGGATGGCAGACACACCA 59.624 57.895 4.37 0.00 41.06 4.17
1824 2032 1.210234 CAGGATGGCAGACACACCATA 59.790 52.381 4.37 0.00 46.72 2.74
1825 2033 2.130193 AGGATGGCAGACACACCATAT 58.870 47.619 4.37 0.00 46.72 1.78
1826 2034 2.105477 AGGATGGCAGACACACCATATC 59.895 50.000 4.37 0.00 46.72 1.63
1827 2035 2.158769 GGATGGCAGACACACCATATCA 60.159 50.000 0.00 0.00 46.72 2.15
1828 2036 3.497405 GGATGGCAGACACACCATATCAT 60.497 47.826 0.00 0.00 46.72 2.45
1829 2037 3.198409 TGGCAGACACACCATATCATC 57.802 47.619 0.00 0.00 0.00 2.92
1830 2038 2.504996 TGGCAGACACACCATATCATCA 59.495 45.455 0.00 0.00 0.00 3.07
1831 2039 2.874701 GGCAGACACACCATATCATCAC 59.125 50.000 0.00 0.00 0.00 3.06
1832 2040 2.874701 GCAGACACACCATATCATCACC 59.125 50.000 0.00 0.00 0.00 4.02
1833 2041 3.682436 GCAGACACACCATATCATCACCA 60.682 47.826 0.00 0.00 0.00 4.17
1834 2042 4.516323 CAGACACACCATATCATCACCAA 58.484 43.478 0.00 0.00 0.00 3.67
1835 2043 4.333649 CAGACACACCATATCATCACCAAC 59.666 45.833 0.00 0.00 0.00 3.77
1836 2044 4.225942 AGACACACCATATCATCACCAACT 59.774 41.667 0.00 0.00 0.00 3.16
1837 2045 4.517285 ACACACCATATCATCACCAACTC 58.483 43.478 0.00 0.00 0.00 3.01
1838 2046 4.225942 ACACACCATATCATCACCAACTCT 59.774 41.667 0.00 0.00 0.00 3.24
1839 2047 4.573607 CACACCATATCATCACCAACTCTG 59.426 45.833 0.00 0.00 0.00 3.35
1840 2048 4.225942 ACACCATATCATCACCAACTCTGT 59.774 41.667 0.00 0.00 0.00 3.41
1841 2049 5.188434 CACCATATCATCACCAACTCTGTT 58.812 41.667 0.00 0.00 0.00 3.16
1842 2050 5.649395 CACCATATCATCACCAACTCTGTTT 59.351 40.000 0.00 0.00 0.00 2.83
1843 2051 6.151648 CACCATATCATCACCAACTCTGTTTT 59.848 38.462 0.00 0.00 0.00 2.43
1844 2052 6.721208 ACCATATCATCACCAACTCTGTTTTT 59.279 34.615 0.00 0.00 0.00 1.94
1914 2131 6.072112 TCTTTTGTTTTGCTAGTTAGGCTG 57.928 37.500 0.00 0.00 0.00 4.85
1924 2425 6.294361 TGCTAGTTAGGCTGAGTAATTCAA 57.706 37.500 0.00 0.00 34.81 2.69
1981 2482 7.737869 TCAGCCGGTAATTAATTATTCAGGTA 58.262 34.615 11.00 0.00 0.00 3.08
1982 2483 7.658575 TCAGCCGGTAATTAATTATTCAGGTAC 59.341 37.037 11.00 0.00 0.00 3.34
1992 2493 9.880157 ATTAATTATTCAGGTACGTTGTACACT 57.120 29.630 9.12 1.87 0.00 3.55
1996 2497 4.389890 TCAGGTACGTTGTACACTGTTT 57.610 40.909 17.32 0.00 0.00 2.83
2000 2501 4.937015 AGGTACGTTGTACACTGTTTTTGT 59.063 37.500 9.12 0.00 0.00 2.83
2015 2516 8.226448 CACTGTTTTTGTGCTTCATTTTGTTTA 58.774 29.630 0.00 0.00 0.00 2.01
2038 2540 2.504367 TCTTCTGCTGTTTTGGTAGCC 58.496 47.619 0.00 0.00 39.15 3.93
2131 2633 6.695278 ACACTTTTGTTCATTGTTTGATACCG 59.305 34.615 0.00 0.00 33.34 4.02
2205 3116 7.222999 TGTTTGTTAAAGTTTTCCTTTATGCGG 59.777 33.333 0.00 0.00 43.42 5.69
2310 3221 7.873505 AGTCTTATATTTTGATACGAAGGGAGC 59.126 37.037 0.00 0.00 0.00 4.70
2374 3287 2.504367 ACATTTGTCTGTGTGGGTAGC 58.496 47.619 0.00 0.00 0.00 3.58
2380 3293 4.697756 TGTGTGGGTAGCAGCGGC 62.698 66.667 0.00 0.00 41.61 6.53
2383 3296 2.671619 GTGGGTAGCAGCGGCAAA 60.672 61.111 12.44 0.00 44.61 3.68
2556 3469 4.511826 CCAACTGTAAGAACAACTCCTCAC 59.488 45.833 0.00 0.00 37.43 3.51
2560 3473 5.305644 ACTGTAAGAACAACTCCTCACATCT 59.694 40.000 0.00 0.00 37.43 2.90
2592 3505 4.218200 TGTTGTTGTTCCTGCATGAATAGG 59.782 41.667 7.71 0.30 35.34 2.57
2598 3511 3.650281 TCCTGCATGAATAGGCTTTGA 57.350 42.857 0.00 0.00 34.05 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.740714 GAACACCGCATCCGTCTGC 61.741 63.158 0.00 0.00 38.81 4.26
27 28 0.106918 AAAGCTGACACCCAAACCGA 60.107 50.000 0.00 0.00 0.00 4.69
35 36 2.087646 GGAATCTCCAAAGCTGACACC 58.912 52.381 0.00 0.00 36.28 4.16
44 45 4.293634 TGGGGACATAAAGGAATCTCCAAA 59.706 41.667 0.00 0.00 38.82 3.28
178 179 4.633175 TGTAGTGCCAACTCATTTCGTAA 58.367 39.130 0.00 0.00 37.88 3.18
200 201 6.670027 TGCTCCCTAGAAGAAGAAGAATACTT 59.330 38.462 0.00 0.00 39.24 2.24
204 205 6.380079 TTTGCTCCCTAGAAGAAGAAGAAT 57.620 37.500 0.00 0.00 0.00 2.40
299 306 6.043411 GGAGTTAGTAGCTAAATGTCTGGTG 58.957 44.000 0.00 0.00 0.00 4.17
338 489 3.181487 GCAACTCATTTGGTGTGACACTT 60.181 43.478 16.07 0.00 35.51 3.16
356 507 4.095610 CGGATTCGTGGAAATTAAGCAAC 58.904 43.478 0.00 0.00 0.00 4.17
409 560 1.470098 AGATGCGTGCCAACTTTGATC 59.530 47.619 0.00 0.00 0.00 2.92
435 586 9.362151 CCCTTTGGAGCTTTTTATATTGGTATA 57.638 33.333 0.00 0.00 0.00 1.47
436 587 8.065007 TCCCTTTGGAGCTTTTTATATTGGTAT 58.935 33.333 0.00 0.00 35.03 2.73
437 588 7.340999 GTCCCTTTGGAGCTTTTTATATTGGTA 59.659 37.037 0.00 0.00 42.85 3.25
438 589 6.154534 GTCCCTTTGGAGCTTTTTATATTGGT 59.845 38.462 0.00 0.00 42.85 3.67
439 590 6.154363 TGTCCCTTTGGAGCTTTTTATATTGG 59.846 38.462 0.00 0.00 42.85 3.16
440 591 7.122650 TCTGTCCCTTTGGAGCTTTTTATATTG 59.877 37.037 0.00 0.00 42.85 1.90
441 592 7.182060 TCTGTCCCTTTGGAGCTTTTTATATT 58.818 34.615 0.00 0.00 42.85 1.28
442 593 6.731467 TCTGTCCCTTTGGAGCTTTTTATAT 58.269 36.000 0.00 0.00 42.85 0.86
443 594 6.134535 TCTGTCCCTTTGGAGCTTTTTATA 57.865 37.500 0.00 0.00 42.85 0.98
444 595 4.998051 TCTGTCCCTTTGGAGCTTTTTAT 58.002 39.130 0.00 0.00 42.85 1.40
445 596 4.447138 TCTGTCCCTTTGGAGCTTTTTA 57.553 40.909 0.00 0.00 42.85 1.52
446 597 3.312736 TCTGTCCCTTTGGAGCTTTTT 57.687 42.857 0.00 0.00 42.85 1.94
447 598 3.425659 GATCTGTCCCTTTGGAGCTTTT 58.574 45.455 0.00 0.00 42.85 2.27
448 599 2.291217 GGATCTGTCCCTTTGGAGCTTT 60.291 50.000 0.00 0.00 42.85 3.51
449 600 1.283321 GGATCTGTCCCTTTGGAGCTT 59.717 52.381 0.00 0.00 42.85 3.74
450 601 0.915364 GGATCTGTCCCTTTGGAGCT 59.085 55.000 0.00 0.00 42.85 4.09
451 602 0.620556 TGGATCTGTCCCTTTGGAGC 59.379 55.000 0.00 0.00 44.41 4.70
452 603 3.549794 GATTGGATCTGTCCCTTTGGAG 58.450 50.000 0.00 0.00 44.41 3.86
453 604 2.242196 GGATTGGATCTGTCCCTTTGGA 59.758 50.000 0.00 0.00 44.41 3.53
454 605 2.025037 TGGATTGGATCTGTCCCTTTGG 60.025 50.000 8.44 0.00 44.41 3.28
455 606 3.370840 TGGATTGGATCTGTCCCTTTG 57.629 47.619 8.44 0.00 44.41 2.77
456 607 3.790408 AGATGGATTGGATCTGTCCCTTT 59.210 43.478 8.44 0.00 44.41 3.11
457 608 3.393941 GAGATGGATTGGATCTGTCCCTT 59.606 47.826 8.44 0.00 44.41 3.95
458 609 2.978278 GAGATGGATTGGATCTGTCCCT 59.022 50.000 8.44 0.85 44.41 4.20
459 610 2.707791 TGAGATGGATTGGATCTGTCCC 59.292 50.000 8.44 0.00 44.41 4.46
460 611 4.133078 GTTGAGATGGATTGGATCTGTCC 58.867 47.826 0.00 0.00 45.31 4.02
461 612 4.133078 GGTTGAGATGGATTGGATCTGTC 58.867 47.826 0.00 0.00 29.97 3.51
462 613 3.432749 CGGTTGAGATGGATTGGATCTGT 60.433 47.826 0.00 0.00 29.97 3.41
463 614 3.136763 CGGTTGAGATGGATTGGATCTG 58.863 50.000 0.00 0.00 29.97 2.90
464 615 2.774234 ACGGTTGAGATGGATTGGATCT 59.226 45.455 0.00 0.00 32.63 2.75
465 616 3.134458 GACGGTTGAGATGGATTGGATC 58.866 50.000 0.00 0.00 0.00 3.36
466 617 2.505407 TGACGGTTGAGATGGATTGGAT 59.495 45.455 0.00 0.00 0.00 3.41
467 618 1.905894 TGACGGTTGAGATGGATTGGA 59.094 47.619 0.00 0.00 0.00 3.53
468 619 2.401583 TGACGGTTGAGATGGATTGG 57.598 50.000 0.00 0.00 0.00 3.16
469 620 4.395854 TGATTTGACGGTTGAGATGGATTG 59.604 41.667 0.00 0.00 0.00 2.67
470 621 4.588899 TGATTTGACGGTTGAGATGGATT 58.411 39.130 0.00 0.00 0.00 3.01
471 622 4.220693 TGATTTGACGGTTGAGATGGAT 57.779 40.909 0.00 0.00 0.00 3.41
472 623 3.694043 TGATTTGACGGTTGAGATGGA 57.306 42.857 0.00 0.00 0.00 3.41
473 624 3.691118 ACATGATTTGACGGTTGAGATGG 59.309 43.478 0.00 0.00 0.00 3.51
474 625 4.392754 TCACATGATTTGACGGTTGAGATG 59.607 41.667 0.00 0.00 0.00 2.90
475 626 4.578871 TCACATGATTTGACGGTTGAGAT 58.421 39.130 0.00 0.00 0.00 2.75
476 627 4.001618 TCACATGATTTGACGGTTGAGA 57.998 40.909 0.00 0.00 0.00 3.27
477 628 4.633126 AGATCACATGATTTGACGGTTGAG 59.367 41.667 0.00 0.00 34.37 3.02
478 629 4.578871 AGATCACATGATTTGACGGTTGA 58.421 39.130 0.00 0.00 34.37 3.18
479 630 4.952262 AGATCACATGATTTGACGGTTG 57.048 40.909 0.00 0.00 34.37 3.77
480 631 4.572389 GCTAGATCACATGATTTGACGGTT 59.428 41.667 0.00 0.00 34.37 4.44
481 632 4.122776 GCTAGATCACATGATTTGACGGT 58.877 43.478 0.00 0.00 34.37 4.83
482 633 3.183172 CGCTAGATCACATGATTTGACGG 59.817 47.826 0.00 0.00 34.37 4.79
483 634 3.183172 CCGCTAGATCACATGATTTGACG 59.817 47.826 0.00 0.00 34.37 4.35
484 635 4.122776 ACCGCTAGATCACATGATTTGAC 58.877 43.478 0.00 0.00 34.37 3.18
485 636 4.406648 ACCGCTAGATCACATGATTTGA 57.593 40.909 0.00 0.00 34.37 2.69
486 637 4.571984 TGAACCGCTAGATCACATGATTTG 59.428 41.667 0.00 0.00 34.37 2.32
487 638 4.769688 TGAACCGCTAGATCACATGATTT 58.230 39.130 0.00 0.00 34.37 2.17
488 639 4.406648 TGAACCGCTAGATCACATGATT 57.593 40.909 0.00 0.00 34.37 2.57
489 640 4.406648 TTGAACCGCTAGATCACATGAT 57.593 40.909 0.00 0.00 37.51 2.45
490 641 3.885724 TTGAACCGCTAGATCACATGA 57.114 42.857 0.00 0.00 0.00 3.07
491 642 4.318333 CGATTTGAACCGCTAGATCACATG 60.318 45.833 0.00 0.00 0.00 3.21
492 643 3.804325 CGATTTGAACCGCTAGATCACAT 59.196 43.478 0.00 0.00 0.00 3.21
493 644 3.186909 CGATTTGAACCGCTAGATCACA 58.813 45.455 0.00 0.00 0.00 3.58
494 645 2.033662 GCGATTTGAACCGCTAGATCAC 60.034 50.000 0.00 0.00 46.96 3.06
495 646 2.201732 GCGATTTGAACCGCTAGATCA 58.798 47.619 0.00 0.00 46.96 2.92
496 647 2.932167 GCGATTTGAACCGCTAGATC 57.068 50.000 0.00 0.00 46.96 2.75
503 654 3.201726 ACATTGAAGCGATTTGAACCG 57.798 42.857 0.00 0.00 0.00 4.44
504 655 4.545610 TCAACATTGAAGCGATTTGAACC 58.454 39.130 0.00 0.00 33.55 3.62
505 656 4.089065 GCTCAACATTGAAGCGATTTGAAC 59.911 41.667 0.00 0.00 36.64 3.18
506 657 4.229096 GCTCAACATTGAAGCGATTTGAA 58.771 39.130 0.00 0.00 36.64 2.69
507 658 3.252944 TGCTCAACATTGAAGCGATTTGA 59.747 39.130 0.00 0.00 36.64 2.69
508 659 3.362831 GTGCTCAACATTGAAGCGATTTG 59.637 43.478 0.00 0.00 36.64 2.32
509 660 3.568538 GTGCTCAACATTGAAGCGATTT 58.431 40.909 0.00 0.00 36.64 2.17
510 661 2.095059 GGTGCTCAACATTGAAGCGATT 60.095 45.455 0.00 0.00 36.64 3.34
511 662 1.470098 GGTGCTCAACATTGAAGCGAT 59.530 47.619 0.00 0.00 36.64 4.58
512 663 0.874390 GGTGCTCAACATTGAAGCGA 59.126 50.000 0.00 0.00 36.64 4.93
513 664 0.592637 TGGTGCTCAACATTGAAGCG 59.407 50.000 0.00 0.00 36.64 4.68
514 665 2.796593 GTTTGGTGCTCAACATTGAAGC 59.203 45.455 0.00 3.10 36.64 3.86
515 666 3.798337 GTGTTTGGTGCTCAACATTGAAG 59.202 43.478 0.00 0.00 36.64 3.02
516 667 3.733380 CGTGTTTGGTGCTCAACATTGAA 60.733 43.478 0.00 0.00 36.64 2.69
517 668 2.223456 CGTGTTTGGTGCTCAACATTGA 60.223 45.455 0.00 0.00 34.67 2.57
518 669 2.118683 CGTGTTTGGTGCTCAACATTG 58.881 47.619 0.00 0.00 34.67 2.82
519 670 1.748493 ACGTGTTTGGTGCTCAACATT 59.252 42.857 0.00 0.00 34.67 2.71
520 671 1.388547 ACGTGTTTGGTGCTCAACAT 58.611 45.000 0.00 0.00 34.67 2.71
521 672 1.169577 AACGTGTTTGGTGCTCAACA 58.830 45.000 0.00 0.00 34.67 3.33
522 673 2.271821 AAACGTGTTTGGTGCTCAAC 57.728 45.000 0.00 0.00 34.67 3.18
523 674 3.190744 TGTTAAACGTGTTTGGTGCTCAA 59.809 39.130 8.19 0.00 34.23 3.02
524 675 2.747989 TGTTAAACGTGTTTGGTGCTCA 59.252 40.909 8.19 0.00 34.23 4.26
525 676 3.103007 GTGTTAAACGTGTTTGGTGCTC 58.897 45.455 8.19 0.00 34.23 4.26
526 677 2.750712 AGTGTTAAACGTGTTTGGTGCT 59.249 40.909 8.19 0.00 34.23 4.40
527 678 3.103007 GAGTGTTAAACGTGTTTGGTGC 58.897 45.455 8.19 0.00 34.23 5.01
528 679 4.609691 AGAGTGTTAAACGTGTTTGGTG 57.390 40.909 8.19 0.00 34.23 4.17
529 680 6.930667 ATTAGAGTGTTAAACGTGTTTGGT 57.069 33.333 8.19 0.00 34.23 3.67
530 681 9.887406 AATAATTAGAGTGTTAAACGTGTTTGG 57.113 29.630 8.19 0.00 34.23 3.28
534 685 8.715088 GGTGAATAATTAGAGTGTTAAACGTGT 58.285 33.333 0.00 0.00 0.00 4.49
535 686 8.173130 GGGTGAATAATTAGAGTGTTAAACGTG 58.827 37.037 0.00 0.00 0.00 4.49
536 687 7.879160 TGGGTGAATAATTAGAGTGTTAAACGT 59.121 33.333 0.00 0.00 0.00 3.99
537 688 8.259049 TGGGTGAATAATTAGAGTGTTAAACG 57.741 34.615 0.00 0.00 0.00 3.60
540 691 9.841295 GGTATGGGTGAATAATTAGAGTGTTAA 57.159 33.333 0.00 0.00 0.00 2.01
541 692 8.994500 TGGTATGGGTGAATAATTAGAGTGTTA 58.006 33.333 0.00 0.00 0.00 2.41
542 693 7.867921 TGGTATGGGTGAATAATTAGAGTGTT 58.132 34.615 0.00 0.00 0.00 3.32
543 694 7.446106 TGGTATGGGTGAATAATTAGAGTGT 57.554 36.000 0.00 0.00 0.00 3.55
544 695 8.786898 CAATGGTATGGGTGAATAATTAGAGTG 58.213 37.037 0.00 0.00 0.00 3.51
545 696 7.944554 CCAATGGTATGGGTGAATAATTAGAGT 59.055 37.037 0.00 0.00 36.79 3.24
546 697 7.944554 ACCAATGGTATGGGTGAATAATTAGAG 59.055 37.037 1.52 0.00 45.18 2.43
547 698 7.821566 ACCAATGGTATGGGTGAATAATTAGA 58.178 34.615 1.52 0.00 45.18 2.10
548 699 8.477419 AACCAATGGTATGGGTGAATAATTAG 57.523 34.615 4.88 0.00 45.18 1.73
552 703 9.937876 TTTATAACCAATGGTATGGGTGAATAA 57.062 29.630 4.88 0.00 41.62 1.40
553 704 9.357161 GTTTATAACCAATGGTATGGGTGAATA 57.643 33.333 4.88 0.00 41.62 1.75
554 705 7.841729 TGTTTATAACCAATGGTATGGGTGAAT 59.158 33.333 4.88 0.00 41.62 2.57
555 706 7.182760 TGTTTATAACCAATGGTATGGGTGAA 58.817 34.615 4.88 0.00 41.62 3.18
556 707 6.732487 TGTTTATAACCAATGGTATGGGTGA 58.268 36.000 4.88 0.00 41.62 4.02
557 708 7.069331 ACATGTTTATAACCAATGGTATGGGTG 59.931 37.037 4.88 0.70 41.62 4.61
558 709 7.129425 ACATGTTTATAACCAATGGTATGGGT 58.871 34.615 4.88 0.00 45.18 4.51
559 710 7.595819 ACATGTTTATAACCAATGGTATGGG 57.404 36.000 4.88 0.00 45.18 4.00
564 715 9.528489 AGTCTAAACATGTTTATAACCAATGGT 57.472 29.630 26.87 0.00 34.29 3.55
569 720 9.562408 TGTTGAGTCTAAACATGTTTATAACCA 57.438 29.630 26.87 21.59 34.86 3.67
570 721 9.821662 GTGTTGAGTCTAAACATGTTTATAACC 57.178 33.333 26.87 20.00 39.57 2.85
571 722 9.821662 GGTGTTGAGTCTAAACATGTTTATAAC 57.178 33.333 26.87 24.94 39.57 1.89
572 723 9.562408 TGGTGTTGAGTCTAAACATGTTTATAA 57.438 29.630 26.87 17.21 39.57 0.98
573 724 9.733556 ATGGTGTTGAGTCTAAACATGTTTATA 57.266 29.630 26.87 19.07 39.57 0.98
574 725 8.635765 ATGGTGTTGAGTCTAAACATGTTTAT 57.364 30.769 26.87 15.36 39.57 1.40
575 726 7.174253 GGATGGTGTTGAGTCTAAACATGTTTA 59.826 37.037 25.48 25.48 39.57 2.01
576 727 6.016276 GGATGGTGTTGAGTCTAAACATGTTT 60.016 38.462 25.99 25.99 39.57 2.83
577 728 5.473504 GGATGGTGTTGAGTCTAAACATGTT 59.526 40.000 4.92 4.92 39.57 2.71
578 729 5.003804 GGATGGTGTTGAGTCTAAACATGT 58.996 41.667 6.04 0.00 39.57 3.21
579 730 5.248640 AGGATGGTGTTGAGTCTAAACATG 58.751 41.667 6.04 0.00 39.57 3.21
580 731 5.505181 AGGATGGTGTTGAGTCTAAACAT 57.495 39.130 6.04 0.00 39.57 2.71
581 732 4.974645 AGGATGGTGTTGAGTCTAAACA 57.025 40.909 0.00 0.00 35.22 2.83
582 733 6.640518 TCATAGGATGGTGTTGAGTCTAAAC 58.359 40.000 0.00 0.00 0.00 2.01
583 734 6.867519 TCATAGGATGGTGTTGAGTCTAAA 57.132 37.500 0.00 0.00 0.00 1.85
584 735 6.867519 TTCATAGGATGGTGTTGAGTCTAA 57.132 37.500 0.00 0.00 0.00 2.10
585 736 6.867519 TTTCATAGGATGGTGTTGAGTCTA 57.132 37.500 0.00 0.00 0.00 2.59
586 737 5.762179 TTTCATAGGATGGTGTTGAGTCT 57.238 39.130 0.00 0.00 0.00 3.24
587 738 6.259608 CAGATTTCATAGGATGGTGTTGAGTC 59.740 42.308 0.00 0.00 0.00 3.36
588 739 6.118170 CAGATTTCATAGGATGGTGTTGAGT 58.882 40.000 0.00 0.00 0.00 3.41
589 740 5.008415 GCAGATTTCATAGGATGGTGTTGAG 59.992 44.000 0.00 0.00 0.00 3.02
590 741 4.883585 GCAGATTTCATAGGATGGTGTTGA 59.116 41.667 0.00 0.00 0.00 3.18
591 742 4.037208 GGCAGATTTCATAGGATGGTGTTG 59.963 45.833 0.00 0.00 0.00 3.33
592 743 4.210331 GGCAGATTTCATAGGATGGTGTT 58.790 43.478 0.00 0.00 0.00 3.32
593 744 3.202818 TGGCAGATTTCATAGGATGGTGT 59.797 43.478 0.00 0.00 0.00 4.16
594 745 3.824133 TGGCAGATTTCATAGGATGGTG 58.176 45.455 0.00 0.00 0.00 4.17
595 746 4.141088 ACATGGCAGATTTCATAGGATGGT 60.141 41.667 0.00 0.00 0.00 3.55
596 747 4.404640 ACATGGCAGATTTCATAGGATGG 58.595 43.478 0.00 0.00 0.00 3.51
597 748 7.698506 ATTACATGGCAGATTTCATAGGATG 57.301 36.000 0.00 0.00 0.00 3.51
598 749 9.812347 TTAATTACATGGCAGATTTCATAGGAT 57.188 29.630 0.00 0.00 0.00 3.24
599 750 9.812347 ATTAATTACATGGCAGATTTCATAGGA 57.188 29.630 0.00 0.00 0.00 2.94
615 766 9.174166 GCGGGAATGGTAAGATATTAATTACAT 57.826 33.333 0.00 0.00 34.28 2.29
616 767 7.332430 CGCGGGAATGGTAAGATATTAATTACA 59.668 37.037 0.00 0.00 34.28 2.41
617 768 7.546667 TCGCGGGAATGGTAAGATATTAATTAC 59.453 37.037 6.13 0.00 0.00 1.89
618 769 7.613585 TCGCGGGAATGGTAAGATATTAATTA 58.386 34.615 6.13 0.00 0.00 1.40
619 770 6.469410 TCGCGGGAATGGTAAGATATTAATT 58.531 36.000 6.13 0.00 0.00 1.40
620 771 6.045072 TCGCGGGAATGGTAAGATATTAAT 57.955 37.500 6.13 0.00 0.00 1.40
621 772 5.471556 TCGCGGGAATGGTAAGATATTAA 57.528 39.130 6.13 0.00 0.00 1.40
622 773 5.244402 TCTTCGCGGGAATGGTAAGATATTA 59.756 40.000 15.86 0.00 0.00 0.98
623 774 4.039973 TCTTCGCGGGAATGGTAAGATATT 59.960 41.667 15.86 0.00 0.00 1.28
624 775 3.576982 TCTTCGCGGGAATGGTAAGATAT 59.423 43.478 15.86 0.00 0.00 1.63
625 776 2.960384 TCTTCGCGGGAATGGTAAGATA 59.040 45.455 15.86 0.00 0.00 1.98
626 777 1.760613 TCTTCGCGGGAATGGTAAGAT 59.239 47.619 15.86 0.00 0.00 2.40
627 778 1.187974 TCTTCGCGGGAATGGTAAGA 58.812 50.000 15.86 5.29 0.00 2.10
628 779 2.018542 TTCTTCGCGGGAATGGTAAG 57.981 50.000 15.86 2.75 0.00 2.34
629 780 2.352388 CTTTCTTCGCGGGAATGGTAA 58.648 47.619 15.86 4.62 0.00 2.85
630 781 2.010043 GCTTTCTTCGCGGGAATGGTA 61.010 52.381 15.86 0.00 0.00 3.25
631 782 1.305930 GCTTTCTTCGCGGGAATGGT 61.306 55.000 15.86 0.00 0.00 3.55
632 783 1.305219 TGCTTTCTTCGCGGGAATGG 61.305 55.000 15.86 5.26 0.00 3.16
633 784 0.521291 TTGCTTTCTTCGCGGGAATG 59.479 50.000 15.86 13.95 0.00 2.67
634 785 1.463674 ATTGCTTTCTTCGCGGGAAT 58.536 45.000 15.86 0.00 0.00 3.01
635 786 1.243902 AATTGCTTTCTTCGCGGGAA 58.756 45.000 14.71 14.71 0.00 3.97
636 787 2.102070 TAATTGCTTTCTTCGCGGGA 57.898 45.000 6.13 0.00 0.00 5.14
637 788 2.911819 TTAATTGCTTTCTTCGCGGG 57.088 45.000 6.13 0.00 0.00 6.13
638 789 5.990408 AGATATTAATTGCTTTCTTCGCGG 58.010 37.500 6.13 0.00 0.00 6.46
639 790 7.530861 GGTAAGATATTAATTGCTTTCTTCGCG 59.469 37.037 0.00 0.00 0.00 5.87
640 791 8.342634 TGGTAAGATATTAATTGCTTTCTTCGC 58.657 33.333 7.52 0.00 0.00 4.70
655 806 9.365906 TGGCACATTGATATTTGGTAAGATATT 57.634 29.630 0.00 0.00 0.00 1.28
656 807 8.796475 GTGGCACATTGATATTTGGTAAGATAT 58.204 33.333 13.86 0.00 44.52 1.63
657 808 7.777440 TGTGGCACATTGATATTTGGTAAGATA 59.223 33.333 17.96 0.00 44.52 1.98
658 809 6.606796 TGTGGCACATTGATATTTGGTAAGAT 59.393 34.615 17.96 0.00 44.52 2.40
659 810 5.948758 TGTGGCACATTGATATTTGGTAAGA 59.051 36.000 17.96 0.00 44.52 2.10
660 811 6.206395 TGTGGCACATTGATATTTGGTAAG 57.794 37.500 17.96 0.00 44.52 2.34
661 812 6.596309 TTGTGGCACATTGATATTTGGTAA 57.404 33.333 22.73 0.00 44.52 2.85
662 813 6.596309 TTTGTGGCACATTGATATTTGGTA 57.404 33.333 22.73 0.00 44.52 3.25
663 814 5.480642 TTTGTGGCACATTGATATTTGGT 57.519 34.783 22.73 0.00 44.52 3.67
664 815 9.195411 GTATATTTGTGGCACATTGATATTTGG 57.805 33.333 22.73 0.00 44.52 3.28
665 816 9.195411 GGTATATTTGTGGCACATTGATATTTG 57.805 33.333 22.73 0.00 44.52 2.32
666 817 9.146586 AGGTATATTTGTGGCACATTGATATTT 57.853 29.630 22.73 8.78 44.52 1.40
667 818 8.710749 AGGTATATTTGTGGCACATTGATATT 57.289 30.769 22.73 5.09 44.52 1.28
668 819 8.710749 AAGGTATATTTGTGGCACATTGATAT 57.289 30.769 22.73 23.09 44.52 1.63
669 820 9.806448 ATAAGGTATATTTGTGGCACATTGATA 57.194 29.630 22.73 18.62 44.52 2.15
670 821 8.710749 ATAAGGTATATTTGTGGCACATTGAT 57.289 30.769 22.73 17.15 44.52 2.57
671 822 8.532186 AATAAGGTATATTTGTGGCACATTGA 57.468 30.769 22.73 11.08 44.52 2.57
689 840 9.835389 TTAGTGGCACGTTATATTAAATAAGGT 57.165 29.630 12.71 8.58 34.23 3.50
698 849 8.255905 GGTAGGATATTAGTGGCACGTTATATT 58.744 37.037 12.71 5.77 0.00 1.28
699 850 7.618512 AGGTAGGATATTAGTGGCACGTTATAT 59.381 37.037 12.71 15.16 0.00 0.86
700 851 6.950041 AGGTAGGATATTAGTGGCACGTTATA 59.050 38.462 12.71 11.25 0.00 0.98
701 852 5.778750 AGGTAGGATATTAGTGGCACGTTAT 59.221 40.000 12.71 10.44 0.00 1.89
702 853 5.142639 AGGTAGGATATTAGTGGCACGTTA 58.857 41.667 12.71 5.87 0.00 3.18
703 854 3.965347 AGGTAGGATATTAGTGGCACGTT 59.035 43.478 12.71 3.63 0.00 3.99
704 855 3.573695 AGGTAGGATATTAGTGGCACGT 58.426 45.455 12.71 5.24 0.00 4.49
705 856 5.717078 TTAGGTAGGATATTAGTGGCACG 57.283 43.478 12.71 0.00 0.00 5.34
706 857 7.094032 ACGTATTAGGTAGGATATTAGTGGCAC 60.094 40.741 10.29 10.29 0.00 5.01
707 858 6.950041 ACGTATTAGGTAGGATATTAGTGGCA 59.050 38.462 0.00 0.00 0.00 4.92
708 859 7.256286 CACGTATTAGGTAGGATATTAGTGGC 58.744 42.308 0.00 0.00 0.00 5.01
709 860 7.094075 TGCACGTATTAGGTAGGATATTAGTGG 60.094 40.741 0.00 0.00 0.00 4.00
710 861 7.823665 TGCACGTATTAGGTAGGATATTAGTG 58.176 38.462 0.00 0.00 0.00 2.74
711 862 8.413309 TTGCACGTATTAGGTAGGATATTAGT 57.587 34.615 0.00 0.00 0.00 2.24
712 863 9.302345 CATTGCACGTATTAGGTAGGATATTAG 57.698 37.037 0.00 0.00 0.00 1.73
713 864 7.762615 GCATTGCACGTATTAGGTAGGATATTA 59.237 37.037 3.15 0.00 0.00 0.98
714 865 6.594159 GCATTGCACGTATTAGGTAGGATATT 59.406 38.462 3.15 0.00 0.00 1.28
715 866 6.106673 GCATTGCACGTATTAGGTAGGATAT 58.893 40.000 3.15 0.00 0.00 1.63
716 867 5.011227 TGCATTGCACGTATTAGGTAGGATA 59.989 40.000 7.38 0.00 31.71 2.59
717 868 4.202315 TGCATTGCACGTATTAGGTAGGAT 60.202 41.667 7.38 0.00 31.71 3.24
718 869 3.133183 TGCATTGCACGTATTAGGTAGGA 59.867 43.478 7.38 0.00 31.71 2.94
719 870 3.462982 TGCATTGCACGTATTAGGTAGG 58.537 45.455 7.38 0.00 31.71 3.18
739 890 7.520119 TTCTTCGTGCACTAGTAATTATGTG 57.480 36.000 16.19 10.10 0.00 3.21
740 891 7.601130 TGTTTCTTCGTGCACTAGTAATTATGT 59.399 33.333 16.19 0.00 0.00 2.29
741 892 7.898309 GTGTTTCTTCGTGCACTAGTAATTATG 59.102 37.037 16.19 0.00 0.00 1.90
742 893 7.064253 GGTGTTTCTTCGTGCACTAGTAATTAT 59.936 37.037 16.19 0.00 32.90 1.28
743 894 6.366877 GGTGTTTCTTCGTGCACTAGTAATTA 59.633 38.462 16.19 3.87 32.90 1.40
744 895 5.178809 GGTGTTTCTTCGTGCACTAGTAATT 59.821 40.000 16.19 0.00 32.90 1.40
745 896 4.689345 GGTGTTTCTTCGTGCACTAGTAAT 59.311 41.667 16.19 0.00 32.90 1.89
746 897 4.053295 GGTGTTTCTTCGTGCACTAGTAA 58.947 43.478 16.19 9.21 32.90 2.24
747 898 3.553508 GGGTGTTTCTTCGTGCACTAGTA 60.554 47.826 16.19 3.28 32.90 1.82
748 899 2.480845 GGTGTTTCTTCGTGCACTAGT 58.519 47.619 16.19 0.00 32.90 2.57
749 900 1.798813 GGGTGTTTCTTCGTGCACTAG 59.201 52.381 16.19 12.05 32.90 2.57
750 901 1.541670 GGGGTGTTTCTTCGTGCACTA 60.542 52.381 16.19 0.00 32.90 2.74
751 902 0.818040 GGGGTGTTTCTTCGTGCACT 60.818 55.000 16.19 0.00 32.90 4.40
757 908 1.336755 CCACTTTGGGGTGTTTCTTCG 59.663 52.381 0.00 0.00 35.63 3.79
799 963 4.006357 GGTAACGCCGGGACCACA 62.006 66.667 2.18 0.00 33.16 4.17
874 1044 4.009675 TGCTCTGCTTGGTGTTTTATAGG 58.990 43.478 0.00 0.00 0.00 2.57
884 1058 1.744368 CTGCGATGCTCTGCTTGGT 60.744 57.895 0.00 0.00 0.00 3.67
902 1076 3.749064 TCTCTGGCCGTGCGAGTC 61.749 66.667 0.00 0.00 35.88 3.36
941 1115 3.799366 TCTCGACTGAGGACTCTGTATC 58.201 50.000 11.14 1.15 42.79 2.24
953 1127 0.378610 CGCTGTATGCTCTCGACTGA 59.621 55.000 0.00 0.00 40.11 3.41
959 1133 0.531532 ATGGTGCGCTGTATGCTCTC 60.532 55.000 9.73 0.00 40.11 3.20
989 1164 4.041917 CGCGCATGGTGTGGCTTT 62.042 61.111 8.75 0.00 0.00 3.51
1012 1187 1.677966 TCCGGTGAAGGAGACTCGG 60.678 63.158 0.00 0.00 42.68 4.63
1017 1192 3.379445 GCCGTCCGGTGAAGGAGA 61.379 66.667 7.66 0.00 42.16 3.71
1067 1245 0.312102 CTGCTGAGGCGATGACGATA 59.688 55.000 0.00 0.00 42.66 2.92
1068 1246 1.067084 CTGCTGAGGCGATGACGAT 59.933 57.895 0.00 0.00 42.66 3.73
1075 1259 3.767806 CTCCTGCTGCTGAGGCGA 61.768 66.667 8.20 0.00 42.25 5.54
1159 1343 2.970324 GCCAAGGACGCACACGAA 60.970 61.111 0.00 0.00 43.93 3.85
1293 1477 3.972276 GCGGTGGCGGCAAAGAAA 61.972 61.111 15.50 0.00 0.00 2.52
1295 1479 4.947147 AAGCGGTGGCGGCAAAGA 62.947 61.111 15.50 0.00 46.35 2.52
1328 1530 1.214062 CACTCAGAGGACGAGCACC 59.786 63.158 1.53 0.00 33.58 5.01
1353 1558 1.669760 CGTAAACTCCGCCAGGCAA 60.670 57.895 13.30 0.00 37.47 4.52
1543 1751 1.586422 CACCTCCCGCATCTATTGTG 58.414 55.000 0.00 0.00 35.52 3.33
1620 1828 1.679977 AACGCATGGGCATCTTGCT 60.680 52.632 10.10 0.00 44.28 3.91
1621 1829 1.517694 CAACGCATGGGCATCTTGC 60.518 57.895 10.10 6.97 44.08 4.01
1622 1830 1.517694 GCAACGCATGGGCATCTTG 60.518 57.895 10.10 7.97 41.24 3.02
1623 1831 1.978080 TGCAACGCATGGGCATCTT 60.978 52.632 10.10 0.00 41.24 2.40
1624 1832 2.361483 TGCAACGCATGGGCATCT 60.361 55.556 10.10 0.00 41.24 2.90
1625 1833 2.202650 GTGCAACGCATGGGCATC 60.203 61.111 10.10 0.00 41.91 3.91
1636 1844 2.918131 GCATCTTGAAGTTCCGTGCAAC 60.918 50.000 0.00 0.00 0.00 4.17
1637 1845 1.266718 GCATCTTGAAGTTCCGTGCAA 59.733 47.619 0.00 0.00 0.00 4.08
1638 1846 0.874390 GCATCTTGAAGTTCCGTGCA 59.126 50.000 0.00 0.00 0.00 4.57
1639 1847 0.874390 TGCATCTTGAAGTTCCGTGC 59.126 50.000 0.00 6.23 0.00 5.34
1640 1848 3.837213 AATGCATCTTGAAGTTCCGTG 57.163 42.857 0.00 0.00 0.00 4.94
1641 1849 3.569701 ACAAATGCATCTTGAAGTTCCGT 59.430 39.130 20.96 0.00 0.00 4.69
1642 1850 4.164822 ACAAATGCATCTTGAAGTTCCG 57.835 40.909 20.96 0.00 0.00 4.30
1643 1851 6.855836 TCATACAAATGCATCTTGAAGTTCC 58.144 36.000 20.96 0.00 32.76 3.62
1644 1852 8.922058 ATTCATACAAATGCATCTTGAAGTTC 57.078 30.769 20.96 0.00 32.76 3.01
1646 1854 9.182214 ACTATTCATACAAATGCATCTTGAAGT 57.818 29.630 20.96 10.17 32.76 3.01
1656 1864 9.833894 CGCAAAATAAACTATTCATACAAATGC 57.166 29.630 0.00 0.00 32.76 3.56
1658 1866 9.528018 CCCGCAAAATAAACTATTCATACAAAT 57.472 29.630 0.00 0.00 0.00 2.32
1659 1867 8.740906 TCCCGCAAAATAAACTATTCATACAAA 58.259 29.630 0.00 0.00 0.00 2.83
1660 1868 8.282455 TCCCGCAAAATAAACTATTCATACAA 57.718 30.769 0.00 0.00 0.00 2.41
1661 1869 7.771361 TCTCCCGCAAAATAAACTATTCATACA 59.229 33.333 0.00 0.00 0.00 2.29
1662 1870 8.149973 TCTCCCGCAAAATAAACTATTCATAC 57.850 34.615 0.00 0.00 0.00 2.39
1663 1871 8.740123 TTCTCCCGCAAAATAAACTATTCATA 57.260 30.769 0.00 0.00 0.00 2.15
1664 1872 7.639113 TTCTCCCGCAAAATAAACTATTCAT 57.361 32.000 0.00 0.00 0.00 2.57
1665 1873 7.455641 TTTCTCCCGCAAAATAAACTATTCA 57.544 32.000 0.00 0.00 0.00 2.57
1666 1874 8.926715 ATTTTCTCCCGCAAAATAAACTATTC 57.073 30.769 0.00 0.00 32.74 1.75
1669 1877 9.796120 CATTATTTTCTCCCGCAAAATAAACTA 57.204 29.630 12.79 0.00 43.69 2.24
1670 1878 8.527810 TCATTATTTTCTCCCGCAAAATAAACT 58.472 29.630 12.79 0.19 43.69 2.66
1671 1879 8.696410 TCATTATTTTCTCCCGCAAAATAAAC 57.304 30.769 12.79 0.00 43.69 2.01
1672 1880 9.883142 ATTCATTATTTTCTCCCGCAAAATAAA 57.117 25.926 12.79 2.07 43.69 1.40
1673 1881 9.883142 AATTCATTATTTTCTCCCGCAAAATAA 57.117 25.926 11.72 11.72 44.19 1.40
1675 1883 9.533253 CTAATTCATTATTTTCTCCCGCAAAAT 57.467 29.630 0.00 0.00 37.27 1.82
1676 1884 8.744652 TCTAATTCATTATTTTCTCCCGCAAAA 58.255 29.630 0.00 0.00 0.00 2.44
1677 1885 8.287439 TCTAATTCATTATTTTCTCCCGCAAA 57.713 30.769 0.00 0.00 0.00 3.68
1678 1886 7.873719 TCTAATTCATTATTTTCTCCCGCAA 57.126 32.000 0.00 0.00 0.00 4.85
1679 1887 7.773224 TCTTCTAATTCATTATTTTCTCCCGCA 59.227 33.333 0.00 0.00 0.00 5.69
1680 1888 8.070769 GTCTTCTAATTCATTATTTTCTCCCGC 58.929 37.037 0.00 0.00 0.00 6.13
1681 1889 8.560374 GGTCTTCTAATTCATTATTTTCTCCCG 58.440 37.037 0.00 0.00 0.00 5.14
1682 1890 9.634021 AGGTCTTCTAATTCATTATTTTCTCCC 57.366 33.333 0.00 0.00 0.00 4.30
1694 1902 8.522830 CCTTTGCAAATAAGGTCTTCTAATTCA 58.477 33.333 13.23 0.00 37.87 2.57
1695 1903 8.917415 CCTTTGCAAATAAGGTCTTCTAATTC 57.083 34.615 13.23 0.00 37.87 2.17
1706 1914 3.445096 CCTCTCCACCTTTGCAAATAAGG 59.555 47.826 13.23 13.17 46.17 2.69
1707 1915 3.445096 CCCTCTCCACCTTTGCAAATAAG 59.555 47.826 13.23 7.36 0.00 1.73
1708 1916 3.430453 CCCTCTCCACCTTTGCAAATAA 58.570 45.455 13.23 0.00 0.00 1.40
1709 1917 2.291540 CCCCTCTCCACCTTTGCAAATA 60.292 50.000 13.23 0.00 0.00 1.40
1710 1918 1.550869 CCCCTCTCCACCTTTGCAAAT 60.551 52.381 13.23 0.00 0.00 2.32
1711 1919 0.178964 CCCCTCTCCACCTTTGCAAA 60.179 55.000 12.14 12.14 0.00 3.68
1712 1920 1.360393 ACCCCTCTCCACCTTTGCAA 61.360 55.000 0.00 0.00 0.00 4.08
1713 1921 1.774217 ACCCCTCTCCACCTTTGCA 60.774 57.895 0.00 0.00 0.00 4.08
1714 1922 1.303643 CACCCCTCTCCACCTTTGC 60.304 63.158 0.00 0.00 0.00 3.68
1715 1923 0.250901 CACACCCCTCTCCACCTTTG 60.251 60.000 0.00 0.00 0.00 2.77
1716 1924 1.427072 CCACACCCCTCTCCACCTTT 61.427 60.000 0.00 0.00 0.00 3.11
1717 1925 1.847968 CCACACCCCTCTCCACCTT 60.848 63.158 0.00 0.00 0.00 3.50
1718 1926 2.203998 CCACACCCCTCTCCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1719 1927 2.758852 TACCCACACCCCTCTCCACC 62.759 65.000 0.00 0.00 0.00 4.61
1720 1928 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
1721 1929 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
1722 1930 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
1723 1931 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
1724 1932 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
1725 1933 3.089284 CAAAAAGATACCCACACCCCTC 58.911 50.000 0.00 0.00 0.00 4.30
1726 1934 2.821625 GCAAAAAGATACCCACACCCCT 60.822 50.000 0.00 0.00 0.00 4.79
1727 1935 1.548719 GCAAAAAGATACCCACACCCC 59.451 52.381 0.00 0.00 0.00 4.95
1728 1936 2.243810 TGCAAAAAGATACCCACACCC 58.756 47.619 0.00 0.00 0.00 4.61
1729 1937 4.329462 TTTGCAAAAAGATACCCACACC 57.671 40.909 10.02 0.00 0.00 4.16
1730 1938 6.259829 ACAATTTTGCAAAAAGATACCCACAC 59.740 34.615 27.10 0.00 0.00 3.82
1731 1939 6.352516 ACAATTTTGCAAAAAGATACCCACA 58.647 32.000 27.10 1.37 0.00 4.17
1732 1940 6.481644 TGACAATTTTGCAAAAAGATACCCAC 59.518 34.615 27.10 12.38 0.00 4.61
1733 1941 6.586344 TGACAATTTTGCAAAAAGATACCCA 58.414 32.000 27.10 15.37 0.00 4.51
1734 1942 7.671495 ATGACAATTTTGCAAAAAGATACCC 57.329 32.000 27.10 13.32 0.00 3.69
1743 1951 8.782144 GGAAGGAAATTATGACAATTTTGCAAA 58.218 29.630 8.05 8.05 30.68 3.68
1744 1952 8.156165 AGGAAGGAAATTATGACAATTTTGCAA 58.844 29.630 0.00 0.00 30.68 4.08
1745 1953 7.678837 AGGAAGGAAATTATGACAATTTTGCA 58.321 30.769 0.00 0.00 30.68 4.08
1746 1954 9.822185 ATAGGAAGGAAATTATGACAATTTTGC 57.178 29.630 0.00 0.00 30.68 3.68
1749 1957 9.713684 TGGATAGGAAGGAAATTATGACAATTT 57.286 29.630 0.00 0.00 32.98 1.82
1750 1958 9.887862 ATGGATAGGAAGGAAATTATGACAATT 57.112 29.630 0.00 0.00 0.00 2.32
1751 1959 9.525826 GATGGATAGGAAGGAAATTATGACAAT 57.474 33.333 0.00 0.00 0.00 2.71
1752 1960 8.501904 TGATGGATAGGAAGGAAATTATGACAA 58.498 33.333 0.00 0.00 0.00 3.18
1753 1961 8.044574 TGATGGATAGGAAGGAAATTATGACA 57.955 34.615 0.00 0.00 0.00 3.58
1754 1962 8.378565 TCTGATGGATAGGAAGGAAATTATGAC 58.621 37.037 0.00 0.00 0.00 3.06
1755 1963 8.510358 TCTGATGGATAGGAAGGAAATTATGA 57.490 34.615 0.00 0.00 0.00 2.15
1763 1971 8.918116 CGATTTATATCTGATGGATAGGAAGGA 58.082 37.037 0.00 0.00 39.89 3.36
1764 1972 8.147058 CCGATTTATATCTGATGGATAGGAAGG 58.853 40.741 0.00 0.00 39.89 3.46
1765 1973 8.918116 TCCGATTTATATCTGATGGATAGGAAG 58.082 37.037 0.00 0.00 39.89 3.46
1766 1974 8.696374 GTCCGATTTATATCTGATGGATAGGAA 58.304 37.037 0.00 0.00 39.89 3.36
1767 1975 7.013369 CGTCCGATTTATATCTGATGGATAGGA 59.987 40.741 0.00 2.21 39.89 2.94
1768 1976 7.142021 CGTCCGATTTATATCTGATGGATAGG 58.858 42.308 0.00 0.06 39.89 2.57
1769 1977 7.142021 CCGTCCGATTTATATCTGATGGATAG 58.858 42.308 16.01 4.34 46.29 2.08
1770 1978 6.461092 GCCGTCCGATTTATATCTGATGGATA 60.461 42.308 21.79 0.00 46.29 2.59
1771 1979 5.682471 GCCGTCCGATTTATATCTGATGGAT 60.682 44.000 21.79 0.00 46.29 3.41
1772 1980 4.381612 GCCGTCCGATTTATATCTGATGGA 60.382 45.833 21.79 6.69 46.29 3.41
1773 1981 3.865745 GCCGTCCGATTTATATCTGATGG 59.134 47.826 16.46 16.46 46.20 3.51
1774 1982 3.865745 GGCCGTCCGATTTATATCTGATG 59.134 47.826 0.00 1.48 33.33 3.07
1775 1983 3.769844 AGGCCGTCCGATTTATATCTGAT 59.230 43.478 0.00 0.00 37.47 2.90
1776 1984 3.162666 AGGCCGTCCGATTTATATCTGA 58.837 45.455 0.00 0.00 37.47 3.27
1777 1985 3.594603 AGGCCGTCCGATTTATATCTG 57.405 47.619 0.00 0.00 37.47 2.90
1778 1986 7.434492 CAATATAGGCCGTCCGATTTATATCT 58.566 38.462 0.00 0.00 37.47 1.98
1779 1987 6.145696 GCAATATAGGCCGTCCGATTTATATC 59.854 42.308 0.00 0.00 37.47 1.63
1780 1988 5.989777 GCAATATAGGCCGTCCGATTTATAT 59.010 40.000 0.00 0.00 37.47 0.86
1781 1989 5.105269 TGCAATATAGGCCGTCCGATTTATA 60.105 40.000 0.00 0.00 37.47 0.98
1782 1990 4.189231 GCAATATAGGCCGTCCGATTTAT 58.811 43.478 0.00 0.00 37.47 1.40
1783 1991 3.007074 TGCAATATAGGCCGTCCGATTTA 59.993 43.478 0.00 0.00 37.47 1.40
1784 1992 2.224426 TGCAATATAGGCCGTCCGATTT 60.224 45.455 0.00 0.00 37.47 2.17
1785 1993 1.346395 TGCAATATAGGCCGTCCGATT 59.654 47.619 0.00 0.00 37.47 3.34
1786 1994 0.973632 TGCAATATAGGCCGTCCGAT 59.026 50.000 0.00 0.00 37.47 4.18
1787 1995 0.317160 CTGCAATATAGGCCGTCCGA 59.683 55.000 0.00 0.00 37.47 4.55
1788 1996 0.670546 CCTGCAATATAGGCCGTCCG 60.671 60.000 0.00 0.00 37.47 4.79
1789 1997 0.685097 TCCTGCAATATAGGCCGTCC 59.315 55.000 0.00 0.00 35.23 4.79
1790 1998 2.350522 CATCCTGCAATATAGGCCGTC 58.649 52.381 0.00 0.00 35.23 4.79
1791 1999 1.003580 CCATCCTGCAATATAGGCCGT 59.996 52.381 0.00 0.00 35.23 5.68
1792 2000 1.742761 CCATCCTGCAATATAGGCCG 58.257 55.000 0.00 0.00 35.23 6.13
1793 2001 1.272092 TGCCATCCTGCAATATAGGCC 60.272 52.381 12.50 0.00 38.56 5.19
1794 2002 2.089980 CTGCCATCCTGCAATATAGGC 58.910 52.381 9.23 9.23 41.51 3.93
1795 2003 3.244665 TGTCTGCCATCCTGCAATATAGG 60.245 47.826 0.00 0.00 41.51 2.57
1796 2004 3.750130 GTGTCTGCCATCCTGCAATATAG 59.250 47.826 0.00 0.00 41.51 1.31
1797 2005 3.136260 TGTGTCTGCCATCCTGCAATATA 59.864 43.478 0.00 0.00 41.51 0.86
1798 2006 2.092267 TGTGTCTGCCATCCTGCAATAT 60.092 45.455 0.00 0.00 41.51 1.28
1799 2007 1.281577 TGTGTCTGCCATCCTGCAATA 59.718 47.619 0.00 0.00 41.51 1.90
1800 2008 0.038599 TGTGTCTGCCATCCTGCAAT 59.961 50.000 0.00 0.00 41.51 3.56
1801 2009 0.890542 GTGTGTCTGCCATCCTGCAA 60.891 55.000 0.00 0.00 41.51 4.08
1802 2010 1.302752 GTGTGTCTGCCATCCTGCA 60.303 57.895 0.00 0.00 39.37 4.41
1803 2011 2.042831 GGTGTGTCTGCCATCCTGC 61.043 63.158 0.00 0.00 0.00 4.85
1804 2012 0.034767 ATGGTGTGTCTGCCATCCTG 60.035 55.000 0.00 0.00 41.24 3.86
1805 2013 1.583556 TATGGTGTGTCTGCCATCCT 58.416 50.000 0.00 0.00 43.73 3.24
1806 2014 2.158769 TGATATGGTGTGTCTGCCATCC 60.159 50.000 0.00 0.00 43.73 3.51
1807 2015 3.198409 TGATATGGTGTGTCTGCCATC 57.802 47.619 0.00 0.00 43.73 3.51
1808 2016 3.136992 TGATGATATGGTGTGTCTGCCAT 59.863 43.478 0.00 0.00 46.24 4.40
1809 2017 2.504996 TGATGATATGGTGTGTCTGCCA 59.495 45.455 0.00 0.00 39.33 4.92
1810 2018 2.874701 GTGATGATATGGTGTGTCTGCC 59.125 50.000 0.00 0.00 0.00 4.85
1811 2019 2.874701 GGTGATGATATGGTGTGTCTGC 59.125 50.000 0.00 0.00 0.00 4.26
1812 2020 4.141233 TGGTGATGATATGGTGTGTCTG 57.859 45.455 0.00 0.00 0.00 3.51
1813 2021 4.225942 AGTTGGTGATGATATGGTGTGTCT 59.774 41.667 0.00 0.00 0.00 3.41
1814 2022 4.517285 AGTTGGTGATGATATGGTGTGTC 58.483 43.478 0.00 0.00 0.00 3.67
1815 2023 4.225942 AGAGTTGGTGATGATATGGTGTGT 59.774 41.667 0.00 0.00 0.00 3.72
1816 2024 4.573607 CAGAGTTGGTGATGATATGGTGTG 59.426 45.833 0.00 0.00 0.00 3.82
1817 2025 4.225942 ACAGAGTTGGTGATGATATGGTGT 59.774 41.667 0.00 0.00 0.00 4.16
1818 2026 4.774124 ACAGAGTTGGTGATGATATGGTG 58.226 43.478 0.00 0.00 0.00 4.17
1819 2027 5.441718 AACAGAGTTGGTGATGATATGGT 57.558 39.130 0.00 0.00 0.00 3.55
1820 2028 6.764308 AAAACAGAGTTGGTGATGATATGG 57.236 37.500 0.00 0.00 0.00 2.74
1887 2104 8.038351 AGCCTAACTAGCAAAACAAAAGAAAAA 58.962 29.630 0.00 0.00 0.00 1.94
1961 2462 8.819974 ACAACGTACCTGAATAATTAATTACCG 58.180 33.333 10.07 5.74 0.00 4.02
1981 2482 3.189702 AGCACAAAAACAGTGTACAACGT 59.810 39.130 0.00 0.00 39.17 3.99
1982 2483 3.753842 AGCACAAAAACAGTGTACAACG 58.246 40.909 0.00 0.00 39.17 4.10
2000 2501 7.927629 AGCAGAAGAATTAAACAAAATGAAGCA 59.072 29.630 0.00 0.00 0.00 3.91
2015 2516 4.021981 GGCTACCAAAACAGCAGAAGAATT 60.022 41.667 0.00 0.00 39.63 2.17
2038 2540 2.186076 GATCGACGAACAGGCTACTTG 58.814 52.381 0.00 0.00 0.00 3.16
2125 2627 4.738740 CCTTTAGTTCGTCACATCGGTATC 59.261 45.833 0.00 0.00 0.00 2.24
2131 2633 3.660865 ACACCCTTTAGTTCGTCACATC 58.339 45.455 0.00 0.00 0.00 3.06
2205 3116 5.573337 ATTACAAAGAAAGAGATGGCTGC 57.427 39.130 0.00 0.00 0.00 5.25
2284 3195 7.873505 GCTCCCTTCGTATCAAAATATAAGACT 59.126 37.037 0.00 0.00 0.00 3.24
2303 3214 6.268387 CCCAATGATTTGTTATATGCTCCCTT 59.732 38.462 0.00 0.00 0.00 3.95
2314 3225 7.068103 ACTCGATTTATGCCCAATGATTTGTTA 59.932 33.333 0.00 0.00 0.00 2.41
2374 3287 4.361451 AACAATAGATTCTTTGCCGCTG 57.639 40.909 0.00 0.00 0.00 5.18
2583 3496 5.163591 TGACAAGCATCAAAGCCTATTCATG 60.164 40.000 0.00 0.00 34.23 3.07
2585 3498 4.334552 TGACAAGCATCAAAGCCTATTCA 58.665 39.130 0.00 0.00 34.23 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.