Multiple sequence alignment - TraesCS7D01G554100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G554100 chr7D 100.000 2600 0 0 1 2600 638275431 638272832 0.000000e+00 4802.0
1 TraesCS7D01G554100 chr7D 98.881 268 3 0 2333 2600 46411889 46412156 1.810000e-131 479.0
2 TraesCS7D01G554100 chr7D 78.378 518 88 16 996 1495 638296963 638296452 5.400000e-82 315.0
3 TraesCS7D01G554100 chr7A 90.248 1333 68 27 998 2303 727800802 727802099 0.000000e+00 1685.0
4 TraesCS7D01G554100 chr7A 94.665 656 26 6 1 653 727799788 727800437 0.000000e+00 1009.0
5 TraesCS7D01G554100 chr7A 78.120 617 101 17 897 1494 727787905 727788506 6.840000e-96 361.0
6 TraesCS7D01G554100 chr7A 78.185 518 92 11 996 1495 727773641 727774155 6.990000e-81 311.0
7 TraesCS7D01G554100 chr7A 95.588 136 6 0 640 775 727800454 727800589 4.360000e-53 219.0
8 TraesCS7D01G554100 chr7A 75.644 427 65 20 1101 1491 727532625 727533048 2.660000e-40 176.0
9 TraesCS7D01G554100 chr7A 85.075 67 7 2 541 606 595290129 595290193 6.010000e-07 65.8
10 TraesCS7D01G554100 chr7A 92.500 40 2 1 2295 2334 23329453 23329415 3.610000e-04 56.5
11 TraesCS7D01G554100 chr7B 90.122 901 72 10 819 1715 734426314 734427201 0.000000e+00 1155.0
12 TraesCS7D01G554100 chr7B 85.294 544 45 6 1326 1864 734417014 734417527 1.770000e-146 529.0
13 TraesCS7D01G554100 chr7B 89.308 318 24 7 1988 2303 734427224 734427533 8.720000e-105 390.0
14 TraesCS7D01G554100 chr7B 78.479 618 99 18 897 1495 734407639 734408241 8.790000e-100 374.0
15 TraesCS7D01G554100 chr7B 87.349 332 27 4 1988 2311 734417512 734417836 1.470000e-97 366.0
16 TraesCS7D01G554100 chr7B 77.090 646 110 22 877 1495 734379310 734379944 3.200000e-89 339.0
17 TraesCS7D01G554100 chr5D 98.127 267 5 0 2334 2600 379407726 379407460 1.410000e-127 466.0
18 TraesCS7D01G554100 chr5D 97.004 267 8 0 2334 2600 510624102 510623836 1.420000e-122 449.0
19 TraesCS7D01G554100 chr5D 92.989 271 15 2 2334 2600 548259221 548259491 2.430000e-105 392.0
20 TraesCS7D01G554100 chr1D 98.846 260 3 0 2334 2593 423281883 423281624 5.070000e-127 464.0
21 TraesCS7D01G554100 chr1D 97.753 267 6 0 2334 2600 347050735 347051001 6.560000e-126 460.0
22 TraesCS7D01G554100 chr1D 94.361 266 14 1 2334 2598 466395369 466395634 8.660000e-110 407.0
23 TraesCS7D01G554100 chr4D 97.753 267 6 0 2334 2600 67338181 67337915 6.560000e-126 460.0
24 TraesCS7D01G554100 chr2D 99.163 239 2 0 2334 2572 416857197 416857435 5.140000e-117 431.0
25 TraesCS7D01G554100 chr5B 86.567 67 6 2 541 606 524413231 524413295 1.290000e-08 71.3
26 TraesCS7D01G554100 chr5B 90.909 44 4 0 2291 2334 356759994 356760037 2.790000e-05 60.2
27 TraesCS7D01G554100 chr5A 85.075 67 7 2 541 606 51666286 51666222 6.010000e-07 65.8
28 TraesCS7D01G554100 chr3A 85.075 67 7 2 541 606 142905844 142905908 6.010000e-07 65.8
29 TraesCS7D01G554100 chr3B 100.000 33 0 0 2298 2330 463125282 463125250 7.770000e-06 62.1
30 TraesCS7D01G554100 chr3B 92.683 41 2 1 2295 2334 590496251 590496211 1.000000e-04 58.4
31 TraesCS7D01G554100 chr2B 100.000 33 0 0 2298 2330 499552949 499552917 7.770000e-06 62.1
32 TraesCS7D01G554100 chr2B 100.000 33 0 0 2298 2330 612680162 612680130 7.770000e-06 62.1
33 TraesCS7D01G554100 chr1B 89.583 48 5 0 1936 1983 25238621 25238668 7.770000e-06 62.1
34 TraesCS7D01G554100 chr1A 100.000 33 0 0 2302 2334 573386446 573386414 7.770000e-06 62.1
35 TraesCS7D01G554100 chr1A 97.143 35 1 0 2300 2334 452046807 452046773 2.790000e-05 60.2
36 TraesCS7D01G554100 chr2A 94.737 38 2 0 2297 2334 612412280 612412243 2.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G554100 chr7D 638272832 638275431 2599 True 4802.0 4802 100.000000 1 2600 1 chr7D.!!$R1 2599
1 TraesCS7D01G554100 chr7D 638296452 638296963 511 True 315.0 315 78.378000 996 1495 1 chr7D.!!$R2 499
2 TraesCS7D01G554100 chr7A 727799788 727802099 2311 False 971.0 1685 93.500333 1 2303 3 chr7A.!!$F5 2302
3 TraesCS7D01G554100 chr7A 727787905 727788506 601 False 361.0 361 78.120000 897 1494 1 chr7A.!!$F4 597
4 TraesCS7D01G554100 chr7A 727773641 727774155 514 False 311.0 311 78.185000 996 1495 1 chr7A.!!$F3 499
5 TraesCS7D01G554100 chr7B 734426314 734427533 1219 False 772.5 1155 89.715000 819 2303 2 chr7B.!!$F4 1484
6 TraesCS7D01G554100 chr7B 734417014 734417836 822 False 447.5 529 86.321500 1326 2311 2 chr7B.!!$F3 985
7 TraesCS7D01G554100 chr7B 734407639 734408241 602 False 374.0 374 78.479000 897 1495 1 chr7B.!!$F2 598
8 TraesCS7D01G554100 chr7B 734379310 734379944 634 False 339.0 339 77.090000 877 1495 1 chr7B.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 944 0.872388 CGTTACCTTCCCTTGCACAC 59.128 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 2673 0.027194 CGCACATCAGATCGCTTTGG 59.973 55.0 0.86 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 9.995003 TTGGATTTGTTGTTTTTGCTCTATATT 57.005 25.926 0.00 0.00 0.00 1.28
275 278 5.776173 ATGTTATCACTTAGTCCTCTCCG 57.224 43.478 0.00 0.00 0.00 4.63
319 322 8.267183 AGACAATGAATGACATGTACCTTCATA 58.733 33.333 21.18 4.64 39.39 2.15
336 339 7.441836 ACCTTCATAAAATGTTCCCTTTTCAC 58.558 34.615 0.00 0.00 0.00 3.18
349 352 9.849166 TGTTCCCTTTTCACGATTTATATTTTC 57.151 29.630 0.00 0.00 0.00 2.29
418 421 4.437659 GGCGCACGGATCAAATAAGTTAAA 60.438 41.667 10.83 0.00 0.00 1.52
419 422 5.090083 GCGCACGGATCAAATAAGTTAAAA 58.910 37.500 0.30 0.00 0.00 1.52
420 423 5.003121 GCGCACGGATCAAATAAGTTAAAAC 59.997 40.000 0.30 0.00 0.00 2.43
421 424 6.081049 CGCACGGATCAAATAAGTTAAAACA 58.919 36.000 0.00 0.00 0.00 2.83
422 425 6.579292 CGCACGGATCAAATAAGTTAAAACAA 59.421 34.615 0.00 0.00 0.00 2.83
423 426 7.272515 CGCACGGATCAAATAAGTTAAAACAAT 59.727 33.333 0.00 0.00 0.00 2.71
435 438 9.942850 ATAAGTTAAAACAATTTTCCCCTCATG 57.057 29.630 0.00 0.00 34.19 3.07
470 473 4.159135 AGAATTTCGCATGCTCCAAGAAAT 59.841 37.500 18.87 18.87 41.53 2.17
472 475 3.492421 TTCGCATGCTCCAAGAAATTC 57.508 42.857 17.13 0.00 0.00 2.17
473 476 2.435422 TCGCATGCTCCAAGAAATTCA 58.565 42.857 17.13 0.00 0.00 2.57
474 477 2.819019 TCGCATGCTCCAAGAAATTCAA 59.181 40.909 17.13 0.00 0.00 2.69
513 516 4.435425 GCATCTTTCCATAATGCAAGCAA 58.565 39.130 0.00 0.00 44.07 3.91
515 518 5.680408 GCATCTTTCCATAATGCAAGCAAGA 60.680 40.000 0.00 0.00 44.07 3.02
625 628 2.808543 CAGGCCACTAATATCTTTCGCC 59.191 50.000 5.01 0.00 35.32 5.54
638 641 2.232941 TCTTTCGCCGATCCACTTTACT 59.767 45.455 0.00 0.00 0.00 2.24
655 658 9.886132 CCACTTTACTATAAGAAATGTGTAGGT 57.114 33.333 0.00 0.00 0.00 3.08
738 771 4.870991 TCATCTTTTCACACACACGTTACA 59.129 37.500 0.00 0.00 0.00 2.41
740 773 3.995048 TCTTTTCACACACACGTTACACA 59.005 39.130 0.00 0.00 0.00 3.72
750 783 3.743911 CACACGTTACACACACATATGGT 59.256 43.478 7.80 0.00 0.00 3.55
764 797 3.591527 ACATATGGTTGGTCTCCAGGAAA 59.408 43.478 7.80 0.00 38.42 3.13
775 808 2.370849 TCTCCAGGAAAGTAGGCGTTTT 59.629 45.455 0.00 0.00 0.00 2.43
776 809 3.579586 TCTCCAGGAAAGTAGGCGTTTTA 59.420 43.478 0.00 0.00 0.00 1.52
777 810 4.040706 TCTCCAGGAAAGTAGGCGTTTTAA 59.959 41.667 0.00 0.00 0.00 1.52
778 811 4.913784 TCCAGGAAAGTAGGCGTTTTAAT 58.086 39.130 0.00 0.00 0.00 1.40
779 812 4.698304 TCCAGGAAAGTAGGCGTTTTAATG 59.302 41.667 0.00 0.00 0.00 1.90
780 813 4.142469 CCAGGAAAGTAGGCGTTTTAATGG 60.142 45.833 0.00 0.00 0.00 3.16
781 814 4.698304 CAGGAAAGTAGGCGTTTTAATGGA 59.302 41.667 0.00 0.00 0.00 3.41
782 815 4.941873 AGGAAAGTAGGCGTTTTAATGGAG 59.058 41.667 0.00 0.00 0.00 3.86
783 816 4.698780 GGAAAGTAGGCGTTTTAATGGAGT 59.301 41.667 0.00 0.00 0.00 3.85
784 817 5.876460 GGAAAGTAGGCGTTTTAATGGAGTA 59.124 40.000 0.00 0.00 0.00 2.59
785 818 6.036844 GGAAAGTAGGCGTTTTAATGGAGTAG 59.963 42.308 0.00 0.00 0.00 2.57
786 819 5.672421 AGTAGGCGTTTTAATGGAGTAGT 57.328 39.130 0.00 0.00 0.00 2.73
787 820 6.046290 AGTAGGCGTTTTAATGGAGTAGTT 57.954 37.500 0.00 0.00 0.00 2.24
788 821 5.873164 AGTAGGCGTTTTAATGGAGTAGTTG 59.127 40.000 0.00 0.00 0.00 3.16
789 822 3.439129 AGGCGTTTTAATGGAGTAGTTGC 59.561 43.478 0.00 0.00 0.00 4.17
790 823 3.439129 GGCGTTTTAATGGAGTAGTTGCT 59.561 43.478 0.00 0.00 0.00 3.91
791 824 4.632688 GGCGTTTTAATGGAGTAGTTGCTA 59.367 41.667 0.00 0.00 0.00 3.49
792 825 5.122711 GGCGTTTTAATGGAGTAGTTGCTAA 59.877 40.000 0.00 0.00 0.00 3.09
793 826 6.183360 GGCGTTTTAATGGAGTAGTTGCTAAT 60.183 38.462 0.00 0.00 0.00 1.73
794 827 6.905609 GCGTTTTAATGGAGTAGTTGCTAATC 59.094 38.462 0.00 0.00 31.32 1.75
824 857 6.320164 AGTGTCACTAGATCCTACTTGTCATC 59.680 42.308 2.87 0.00 0.00 2.92
857 939 0.958876 GTGGGCGTTACCTTCCCTTG 60.959 60.000 0.00 0.00 40.69 3.61
862 944 0.872388 CGTTACCTTCCCTTGCACAC 59.128 55.000 0.00 0.00 0.00 3.82
963 1053 3.237268 ACAGAGTCCAGAGTTCAGAGT 57.763 47.619 0.00 0.00 0.00 3.24
964 1054 3.571590 ACAGAGTCCAGAGTTCAGAGTT 58.428 45.455 0.00 0.00 0.00 3.01
965 1055 3.572255 ACAGAGTCCAGAGTTCAGAGTTC 59.428 47.826 0.00 0.00 0.00 3.01
966 1056 3.571828 CAGAGTCCAGAGTTCAGAGTTCA 59.428 47.826 0.00 0.00 0.00 3.18
967 1057 3.826157 AGAGTCCAGAGTTCAGAGTTCAG 59.174 47.826 0.00 0.00 0.00 3.02
968 1058 3.823873 GAGTCCAGAGTTCAGAGTTCAGA 59.176 47.826 0.00 0.00 0.00 3.27
983 1073 7.452813 TCAGAGTTCAGACACCATATATAGCAT 59.547 37.037 0.00 0.00 0.00 3.79
1084 1175 2.202797 CGTCTCCGGTGAGCATGG 60.203 66.667 6.43 0.00 38.58 3.66
1113 1207 2.668550 CAGCAGCAGCAGCAGACA 60.669 61.111 12.92 0.00 45.49 3.41
1147 1241 1.000843 CAGTGAACTCGGACATGGTGA 59.999 52.381 0.00 0.00 0.00 4.02
1149 1243 3.096852 AGTGAACTCGGACATGGTGATA 58.903 45.455 0.00 0.00 0.00 2.15
1158 1252 2.508526 GACATGGTGATAATCCTGGCC 58.491 52.381 0.00 0.00 0.00 5.36
1161 1255 1.140312 TGGTGATAATCCTGGCCTCC 58.860 55.000 3.32 0.00 0.00 4.30
1248 1354 3.068691 TCCGCCAACTCTCCTCCG 61.069 66.667 0.00 0.00 0.00 4.63
1272 1378 1.006400 CCCAAGGGCCTCAAGAAGAAT 59.994 52.381 6.46 0.00 0.00 2.40
1291 1397 1.953138 GACATCGATGCGCTCCCTG 60.953 63.158 25.11 0.00 0.00 4.45
1292 1398 2.107750 CATCGATGCGCTCCCTGT 59.892 61.111 13.37 0.00 0.00 4.00
1296 1402 2.805546 GATGCGCTCCCTGTCGTA 59.194 61.111 9.73 0.00 0.00 3.43
1298 1404 0.941463 GATGCGCTCCCTGTCGTATG 60.941 60.000 9.73 0.00 31.55 2.39
1299 1405 1.676678 ATGCGCTCCCTGTCGTATGT 61.677 55.000 9.73 0.00 30.31 2.29
1310 1416 1.080366 TCGTATGTTTCGCTGCCGT 60.080 52.632 0.00 0.00 35.54 5.68
1516 1643 0.540133 TGTGGTGGTAGTAGTGGCGA 60.540 55.000 0.00 0.00 0.00 5.54
1598 1732 5.015817 ACATGTCCTTACCCCCATTTTCTTA 59.984 40.000 0.00 0.00 0.00 2.10
1747 1881 2.490328 CGTCCAGCAAAACATTGTGT 57.510 45.000 0.00 0.00 0.00 3.72
1748 1882 2.808244 CGTCCAGCAAAACATTGTGTT 58.192 42.857 0.00 0.00 43.41 3.32
1749 1883 3.958704 CGTCCAGCAAAACATTGTGTTA 58.041 40.909 0.00 0.00 40.14 2.41
1750 1884 4.545610 CGTCCAGCAAAACATTGTGTTAT 58.454 39.130 0.00 0.00 40.14 1.89
1751 1885 4.981674 CGTCCAGCAAAACATTGTGTTATT 59.018 37.500 0.00 0.00 40.14 1.40
1752 1886 5.461737 CGTCCAGCAAAACATTGTGTTATTT 59.538 36.000 0.00 0.00 40.14 1.40
1753 1887 6.561902 CGTCCAGCAAAACATTGTGTTATTTG 60.562 38.462 7.13 7.13 40.14 2.32
1819 1953 2.826428 TCTGCGATATTCACCTCTTGC 58.174 47.619 0.00 0.00 0.00 4.01
1852 1986 2.340328 GGCCGGGACAAATCACCAC 61.340 63.158 2.18 0.00 0.00 4.16
1855 1989 1.165270 CCGGGACAAATCACCACTTC 58.835 55.000 0.00 0.00 0.00 3.01
1865 1999 6.302269 ACAAATCACCACTTCATCTTCTTCT 58.698 36.000 0.00 0.00 0.00 2.85
1867 2001 7.040823 ACAAATCACCACTTCATCTTCTTCTTC 60.041 37.037 0.00 0.00 0.00 2.87
1870 2004 6.226787 TCACCACTTCATCTTCTTCTTCTTC 58.773 40.000 0.00 0.00 0.00 2.87
1877 2013 5.300752 TCATCTTCTTCTTCTTCTTTGCGT 58.699 37.500 0.00 0.00 0.00 5.24
1910 2046 8.325787 ACAATGTATTACTCATCACCAAGGTTA 58.674 33.333 0.00 0.00 0.00 2.85
2291 2441 1.734477 CGTGCTTCCGGAGACACAG 60.734 63.158 28.19 20.12 34.27 3.66
2307 2457 4.589374 AGACACAGCCTAACATATACTCCC 59.411 45.833 0.00 0.00 0.00 4.30
2311 2461 3.193691 CAGCCTAACATATACTCCCTCCG 59.806 52.174 0.00 0.00 0.00 4.63
2312 2462 3.163467 GCCTAACATATACTCCCTCCGT 58.837 50.000 0.00 0.00 0.00 4.69
2313 2463 3.577415 GCCTAACATATACTCCCTCCGTT 59.423 47.826 0.00 0.00 0.00 4.44
2314 2464 4.040095 GCCTAACATATACTCCCTCCGTTT 59.960 45.833 0.00 0.00 0.00 3.60
2315 2465 5.780984 CCTAACATATACTCCCTCCGTTTC 58.219 45.833 0.00 0.00 0.00 2.78
2316 2466 4.317671 AACATATACTCCCTCCGTTTCG 57.682 45.455 0.00 0.00 0.00 3.46
2317 2467 3.559069 ACATATACTCCCTCCGTTTCGA 58.441 45.455 0.00 0.00 0.00 3.71
2318 2468 3.956199 ACATATACTCCCTCCGTTTCGAA 59.044 43.478 0.00 0.00 0.00 3.71
2319 2469 4.587684 ACATATACTCCCTCCGTTTCGAAT 59.412 41.667 0.00 0.00 0.00 3.34
2320 2470 5.070047 ACATATACTCCCTCCGTTTCGAATT 59.930 40.000 0.00 0.00 0.00 2.17
2321 2471 6.266103 ACATATACTCCCTCCGTTTCGAATTA 59.734 38.462 0.00 0.00 0.00 1.40
2322 2472 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2323 2473 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2324 2474 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2325 2475 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2326 2476 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2327 2477 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2328 2478 3.060363 CCTCCGTTTCGAATTACTTGTCG 59.940 47.826 0.00 0.00 38.62 4.35
2329 2479 2.409378 TCCGTTTCGAATTACTTGTCGC 59.591 45.455 0.00 0.00 37.19 5.19
2330 2480 2.405736 CGTTTCGAATTACTTGTCGCG 58.594 47.619 0.00 0.00 37.19 5.87
2331 2481 2.754478 GTTTCGAATTACTTGTCGCGG 58.246 47.619 6.13 0.00 37.19 6.46
2332 2482 1.352114 TTCGAATTACTTGTCGCGGG 58.648 50.000 6.13 0.00 37.19 6.13
2333 2483 0.244450 TCGAATTACTTGTCGCGGGT 59.756 50.000 6.13 3.16 37.19 5.28
2334 2484 1.073177 CGAATTACTTGTCGCGGGTT 58.927 50.000 6.13 0.00 0.00 4.11
2335 2485 1.461897 CGAATTACTTGTCGCGGGTTT 59.538 47.619 6.13 0.00 0.00 3.27
2336 2486 2.096119 CGAATTACTTGTCGCGGGTTTT 60.096 45.455 6.13 0.00 0.00 2.43
2337 2487 3.485633 GAATTACTTGTCGCGGGTTTTC 58.514 45.455 6.13 4.63 0.00 2.29
2338 2488 0.860533 TTACTTGTCGCGGGTTTTCG 59.139 50.000 6.13 0.00 0.00 3.46
2339 2489 0.031857 TACTTGTCGCGGGTTTTCGA 59.968 50.000 6.13 0.00 0.00 3.71
2340 2490 0.601841 ACTTGTCGCGGGTTTTCGAT 60.602 50.000 6.13 0.00 37.06 3.59
2341 2491 1.337074 ACTTGTCGCGGGTTTTCGATA 60.337 47.619 6.13 0.00 37.06 2.92
2342 2492 1.727880 CTTGTCGCGGGTTTTCGATAA 59.272 47.619 6.13 0.00 37.06 1.75
2343 2493 1.793258 TGTCGCGGGTTTTCGATAAA 58.207 45.000 6.13 0.00 37.06 1.40
2344 2494 2.348660 TGTCGCGGGTTTTCGATAAAT 58.651 42.857 6.13 0.00 37.06 1.40
2345 2495 2.094575 TGTCGCGGGTTTTCGATAAATG 59.905 45.455 6.13 0.00 37.06 2.32
2346 2496 1.666700 TCGCGGGTTTTCGATAAATGG 59.333 47.619 6.13 0.00 0.00 3.16
2347 2497 1.399089 CGCGGGTTTTCGATAAATGGT 59.601 47.619 0.00 0.00 0.00 3.55
2348 2498 2.789779 CGCGGGTTTTCGATAAATGGTG 60.790 50.000 0.00 0.00 0.00 4.17
2349 2499 2.420722 GCGGGTTTTCGATAAATGGTGA 59.579 45.455 0.00 0.00 0.00 4.02
2350 2500 3.119779 GCGGGTTTTCGATAAATGGTGAA 60.120 43.478 0.00 0.00 0.00 3.18
2351 2501 4.439563 GCGGGTTTTCGATAAATGGTGAAT 60.440 41.667 0.00 0.00 0.00 2.57
2352 2502 5.646606 CGGGTTTTCGATAAATGGTGAATT 58.353 37.500 0.00 0.00 0.00 2.17
2353 2503 6.096695 CGGGTTTTCGATAAATGGTGAATTT 58.903 36.000 0.00 0.00 41.47 1.82
2354 2504 6.588373 CGGGTTTTCGATAAATGGTGAATTTT 59.412 34.615 0.00 0.00 39.29 1.82
2355 2505 7.755822 CGGGTTTTCGATAAATGGTGAATTTTA 59.244 33.333 0.00 0.00 39.29 1.52
2356 2506 9.594478 GGGTTTTCGATAAATGGTGAATTTTAT 57.406 29.630 0.00 0.00 39.29 1.40
2373 2523 9.761504 TGAATTTTATTGACTCAAAATGAAGCA 57.238 25.926 0.00 0.00 35.19 3.91
2376 2526 9.932207 ATTTTATTGACTCAAAATGAAGCATCA 57.068 25.926 0.00 0.00 40.57 3.07
2377 2527 9.761504 TTTTATTGACTCAAAATGAAGCATCAA 57.238 25.926 0.00 0.00 39.49 2.57
2378 2528 8.975410 TTATTGACTCAAAATGAAGCATCAAG 57.025 30.769 0.00 0.00 39.49 3.02
2379 2529 6.638096 TTGACTCAAAATGAAGCATCAAGA 57.362 33.333 0.00 0.00 39.49 3.02
2380 2530 6.638096 TGACTCAAAATGAAGCATCAAGAA 57.362 33.333 0.00 0.00 39.49 2.52
2381 2531 6.675026 TGACTCAAAATGAAGCATCAAGAAG 58.325 36.000 0.00 0.00 39.49 2.85
2382 2532 6.487668 TGACTCAAAATGAAGCATCAAGAAGA 59.512 34.615 0.00 0.00 39.49 2.87
2383 2533 7.176165 TGACTCAAAATGAAGCATCAAGAAGAT 59.824 33.333 0.00 0.00 39.49 2.40
2384 2534 8.571461 ACTCAAAATGAAGCATCAAGAAGATA 57.429 30.769 0.00 0.00 39.49 1.98
2385 2535 8.457261 ACTCAAAATGAAGCATCAAGAAGATAC 58.543 33.333 0.00 0.00 39.49 2.24
2386 2536 8.339344 TCAAAATGAAGCATCAAGAAGATACA 57.661 30.769 0.00 0.00 39.49 2.29
2387 2537 8.963725 TCAAAATGAAGCATCAAGAAGATACAT 58.036 29.630 0.00 0.00 39.49 2.29
2391 2541 8.969260 ATGAAGCATCAAGAAGATACATAACA 57.031 30.769 0.00 0.00 39.49 2.41
2392 2542 8.201554 TGAAGCATCAAGAAGATACATAACAC 57.798 34.615 0.00 0.00 34.43 3.32
2393 2543 7.823799 TGAAGCATCAAGAAGATACATAACACA 59.176 33.333 0.00 0.00 34.43 3.72
2394 2544 7.783090 AGCATCAAGAAGATACATAACACAG 57.217 36.000 0.00 0.00 34.43 3.66
2395 2545 7.334090 AGCATCAAGAAGATACATAACACAGT 58.666 34.615 0.00 0.00 34.43 3.55
2396 2546 7.279536 AGCATCAAGAAGATACATAACACAGTG 59.720 37.037 0.00 0.00 34.43 3.66
2397 2547 7.278646 GCATCAAGAAGATACATAACACAGTGA 59.721 37.037 7.81 0.00 34.43 3.41
2398 2548 8.815189 CATCAAGAAGATACATAACACAGTGAG 58.185 37.037 7.81 0.00 34.43 3.51
2399 2549 6.813649 TCAAGAAGATACATAACACAGTGAGC 59.186 38.462 7.81 0.00 0.00 4.26
2400 2550 6.286240 AGAAGATACATAACACAGTGAGCA 57.714 37.500 7.81 0.00 0.00 4.26
2401 2551 6.882656 AGAAGATACATAACACAGTGAGCAT 58.117 36.000 7.81 0.00 0.00 3.79
2402 2552 8.011844 AGAAGATACATAACACAGTGAGCATA 57.988 34.615 7.81 0.00 0.00 3.14
2403 2553 7.923344 AGAAGATACATAACACAGTGAGCATAC 59.077 37.037 7.81 0.00 0.00 2.39
2404 2554 7.112452 AGATACATAACACAGTGAGCATACA 57.888 36.000 7.81 0.00 0.00 2.29
2405 2555 6.980978 AGATACATAACACAGTGAGCATACAC 59.019 38.462 7.81 0.00 40.60 2.90
2406 2556 4.253685 ACATAACACAGTGAGCATACACC 58.746 43.478 7.81 0.00 41.12 4.16
2407 2557 2.185004 AACACAGTGAGCATACACCC 57.815 50.000 7.81 0.00 41.12 4.61
2408 2558 0.037326 ACACAGTGAGCATACACCCG 60.037 55.000 7.81 0.00 41.12 5.28
2409 2559 0.740868 CACAGTGAGCATACACCCGG 60.741 60.000 0.00 0.00 41.12 5.73
2410 2560 1.815421 CAGTGAGCATACACCCGGC 60.815 63.158 0.00 0.00 41.12 6.13
2411 2561 2.513897 GTGAGCATACACCCGGCC 60.514 66.667 0.00 0.00 35.07 6.13
2412 2562 2.687200 TGAGCATACACCCGGCCT 60.687 61.111 0.00 0.00 0.00 5.19
2413 2563 2.109181 GAGCATACACCCGGCCTC 59.891 66.667 0.00 0.00 0.00 4.70
2414 2564 2.365635 AGCATACACCCGGCCTCT 60.366 61.111 0.00 0.00 0.00 3.69
2415 2565 2.203070 GCATACACCCGGCCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
2416 2566 2.203070 CATACACCCGGCCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
2417 2567 2.687200 ATACACCCGGCCTCTGCA 60.687 61.111 0.00 0.00 40.13 4.41
2418 2568 2.072487 ATACACCCGGCCTCTGCAT 61.072 57.895 0.00 0.00 40.13 3.96
2419 2569 0.762842 ATACACCCGGCCTCTGCATA 60.763 55.000 0.00 0.00 40.13 3.14
2420 2570 1.399744 TACACCCGGCCTCTGCATAG 61.400 60.000 0.00 0.00 40.13 2.23
2421 2571 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
2422 2572 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
2423 2573 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
2424 2574 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
2425 2575 1.291588 CGGCCTCTGCATAGCTAGG 59.708 63.158 0.00 0.00 40.13 3.02
2426 2576 1.181741 CGGCCTCTGCATAGCTAGGA 61.182 60.000 10.11 0.00 40.13 2.94
2427 2577 1.274712 GGCCTCTGCATAGCTAGGAT 58.725 55.000 10.11 0.00 40.13 3.24
2428 2578 1.066286 GGCCTCTGCATAGCTAGGATG 60.066 57.143 10.11 0.00 40.13 3.51
2436 2586 2.141517 CATAGCTAGGATGCACACAGC 58.858 52.381 0.00 0.00 45.96 4.40
2442 2592 4.950744 GATGCACACAGCCAACAC 57.049 55.556 0.00 0.00 44.83 3.32
2443 2593 1.286880 GATGCACACAGCCAACACC 59.713 57.895 0.00 0.00 44.83 4.16
2444 2594 1.454572 GATGCACACAGCCAACACCA 61.455 55.000 0.00 0.00 44.83 4.17
2445 2595 1.737355 ATGCACACAGCCAACACCAC 61.737 55.000 0.00 0.00 44.83 4.16
2446 2596 2.413963 GCACACAGCCAACACCACA 61.414 57.895 0.00 0.00 37.23 4.17
2447 2597 1.433064 CACACAGCCAACACCACAC 59.567 57.895 0.00 0.00 0.00 3.82
2448 2598 1.001517 ACACAGCCAACACCACACA 60.002 52.632 0.00 0.00 0.00 3.72
2449 2599 1.312371 ACACAGCCAACACCACACAC 61.312 55.000 0.00 0.00 0.00 3.82
2450 2600 2.112198 ACAGCCAACACCACACACG 61.112 57.895 0.00 0.00 0.00 4.49
2451 2601 3.209097 AGCCAACACCACACACGC 61.209 61.111 0.00 0.00 0.00 5.34
2452 2602 3.513438 GCCAACACCACACACGCA 61.513 61.111 0.00 0.00 0.00 5.24
2453 2603 2.407210 CCAACACCACACACGCAC 59.593 61.111 0.00 0.00 0.00 5.34
2454 2604 2.022623 CAACACCACACACGCACG 59.977 61.111 0.00 0.00 0.00 5.34
2455 2605 2.435234 AACACCACACACGCACGT 60.435 55.556 0.00 0.00 0.00 4.49
2456 2606 1.153608 AACACCACACACGCACGTA 60.154 52.632 0.00 0.00 0.00 3.57
2457 2607 0.740164 AACACCACACACGCACGTAA 60.740 50.000 0.00 0.00 0.00 3.18
2458 2608 0.740164 ACACCACACACGCACGTAAA 60.740 50.000 0.00 0.00 0.00 2.01
2459 2609 0.374063 CACCACACACGCACGTAAAA 59.626 50.000 0.00 0.00 0.00 1.52
2460 2610 1.085091 ACCACACACGCACGTAAAAA 58.915 45.000 0.00 0.00 0.00 1.94
2479 2629 5.590530 AAAAACATGTCCACAACTAGCAA 57.409 34.783 0.00 0.00 0.00 3.91
2480 2630 5.590530 AAAACATGTCCACAACTAGCAAA 57.409 34.783 0.00 0.00 0.00 3.68
2481 2631 4.836125 AACATGTCCACAACTAGCAAAG 57.164 40.909 0.00 0.00 0.00 2.77
2482 2632 3.820557 ACATGTCCACAACTAGCAAAGT 58.179 40.909 0.00 0.00 41.49 2.66
2483 2633 3.815401 ACATGTCCACAACTAGCAAAGTC 59.185 43.478 0.00 0.00 37.50 3.01
2484 2634 3.552132 TGTCCACAACTAGCAAAGTCA 57.448 42.857 0.00 0.00 37.50 3.41
2485 2635 4.085357 TGTCCACAACTAGCAAAGTCAT 57.915 40.909 0.00 0.00 37.50 3.06
2486 2636 5.222079 TGTCCACAACTAGCAAAGTCATA 57.778 39.130 0.00 0.00 37.50 2.15
2487 2637 5.804639 TGTCCACAACTAGCAAAGTCATAT 58.195 37.500 0.00 0.00 37.50 1.78
2488 2638 6.941857 TGTCCACAACTAGCAAAGTCATATA 58.058 36.000 0.00 0.00 37.50 0.86
2489 2639 7.390823 TGTCCACAACTAGCAAAGTCATATAA 58.609 34.615 0.00 0.00 37.50 0.98
2490 2640 7.549134 TGTCCACAACTAGCAAAGTCATATAAG 59.451 37.037 0.00 0.00 37.50 1.73
2491 2641 7.764443 GTCCACAACTAGCAAAGTCATATAAGA 59.236 37.037 0.00 0.00 37.50 2.10
2492 2642 7.764443 TCCACAACTAGCAAAGTCATATAAGAC 59.236 37.037 0.00 0.00 37.50 3.01
2493 2643 7.011482 CCACAACTAGCAAAGTCATATAAGACC 59.989 40.741 4.52 0.00 37.50 3.85
2494 2644 7.549134 CACAACTAGCAAAGTCATATAAGACCA 59.451 37.037 4.52 0.00 37.50 4.02
2495 2645 8.100791 ACAACTAGCAAAGTCATATAAGACCAA 58.899 33.333 4.52 0.00 37.50 3.67
2496 2646 8.946085 CAACTAGCAAAGTCATATAAGACCAAA 58.054 33.333 4.52 0.00 37.50 3.28
2497 2647 8.723942 ACTAGCAAAGTCATATAAGACCAAAG 57.276 34.615 4.52 0.00 39.34 2.77
2498 2648 6.442513 AGCAAAGTCATATAAGACCAAAGC 57.557 37.500 4.52 4.82 39.34 3.51
2499 2649 6.183347 AGCAAAGTCATATAAGACCAAAGCT 58.817 36.000 4.52 6.76 39.34 3.74
2500 2650 7.338710 AGCAAAGTCATATAAGACCAAAGCTA 58.661 34.615 4.52 0.00 39.34 3.32
2501 2651 7.995488 AGCAAAGTCATATAAGACCAAAGCTAT 59.005 33.333 4.52 0.00 39.34 2.97
2502 2652 8.072567 GCAAAGTCATATAAGACCAAAGCTATG 58.927 37.037 4.52 0.00 39.34 2.23
2503 2653 7.736447 AAGTCATATAAGACCAAAGCTATGC 57.264 36.000 4.52 0.00 39.34 3.14
2504 2654 5.928839 AGTCATATAAGACCAAAGCTATGCG 59.071 40.000 4.52 0.00 39.34 4.73
2505 2655 5.696724 GTCATATAAGACCAAAGCTATGCGT 59.303 40.000 0.00 0.00 32.36 5.24
2506 2656 6.866770 GTCATATAAGACCAAAGCTATGCGTA 59.133 38.462 0.00 0.00 32.36 4.42
2507 2657 7.062371 GTCATATAAGACCAAAGCTATGCGTAG 59.938 40.741 8.70 8.70 32.36 3.51
2508 2658 2.604046 AGACCAAAGCTATGCGTAGG 57.396 50.000 14.75 0.98 0.00 3.18
2509 2659 0.938008 GACCAAAGCTATGCGTAGGC 59.062 55.000 14.75 0.00 40.52 3.93
2510 2660 0.810031 ACCAAAGCTATGCGTAGGCG 60.810 55.000 14.75 0.00 44.10 5.52
2511 2661 0.529773 CCAAAGCTATGCGTAGGCGA 60.530 55.000 14.75 0.00 44.10 5.54
2512 2662 0.855349 CAAAGCTATGCGTAGGCGAG 59.145 55.000 14.75 4.01 44.10 5.03
2513 2663 0.744874 AAAGCTATGCGTAGGCGAGA 59.255 50.000 14.75 0.00 44.10 4.04
2514 2664 0.744874 AAGCTATGCGTAGGCGAGAA 59.255 50.000 14.75 0.00 44.10 2.87
2515 2665 0.744874 AGCTATGCGTAGGCGAGAAA 59.255 50.000 14.75 0.00 44.10 2.52
2516 2666 1.136305 AGCTATGCGTAGGCGAGAAAA 59.864 47.619 14.75 0.00 44.10 2.29
2517 2667 1.931172 GCTATGCGTAGGCGAGAAAAA 59.069 47.619 14.75 0.00 44.10 1.94
2538 2688 4.644103 AAAATCCCAAAGCGATCTGATG 57.356 40.909 0.00 0.00 0.00 3.07
2539 2689 3.287867 AATCCCAAAGCGATCTGATGT 57.712 42.857 0.00 0.00 0.00 3.06
2540 2690 2.028420 TCCCAAAGCGATCTGATGTG 57.972 50.000 0.00 0.00 0.00 3.21
2541 2691 0.379669 CCCAAAGCGATCTGATGTGC 59.620 55.000 0.00 0.00 0.00 4.57
2542 2692 0.027194 CCAAAGCGATCTGATGTGCG 59.973 55.000 0.00 0.00 0.00 5.34
2543 2693 1.001624 CAAAGCGATCTGATGTGCGA 58.998 50.000 0.00 0.00 0.00 5.10
2544 2694 1.596260 CAAAGCGATCTGATGTGCGAT 59.404 47.619 0.00 0.00 0.00 4.58
2545 2695 1.495878 AAGCGATCTGATGTGCGATC 58.504 50.000 0.00 0.00 34.19 3.69
2549 2699 2.125461 GATCTGATGTGCGATCGACA 57.875 50.000 21.57 19.48 0.00 4.35
2550 2700 2.463876 GATCTGATGTGCGATCGACAA 58.536 47.619 21.57 2.54 0.00 3.18
2551 2701 2.362169 TCTGATGTGCGATCGACAAA 57.638 45.000 21.57 12.00 0.00 2.83
2552 2702 1.992667 TCTGATGTGCGATCGACAAAC 59.007 47.619 21.57 16.69 0.00 2.93
2553 2703 1.995484 CTGATGTGCGATCGACAAACT 59.005 47.619 21.57 5.72 0.00 2.66
2554 2704 3.119637 TCTGATGTGCGATCGACAAACTA 60.120 43.478 21.57 5.85 0.00 2.24
2555 2705 2.921121 TGATGTGCGATCGACAAACTAC 59.079 45.455 21.57 5.88 0.00 2.73
2556 2706 2.425578 TGTGCGATCGACAAACTACA 57.574 45.000 21.57 8.35 0.00 2.74
2557 2707 2.745102 TGTGCGATCGACAAACTACAA 58.255 42.857 21.57 0.00 0.00 2.41
2558 2708 2.473609 TGTGCGATCGACAAACTACAAC 59.526 45.455 21.57 2.87 0.00 3.32
2559 2709 2.473609 GTGCGATCGACAAACTACAACA 59.526 45.455 21.57 0.00 0.00 3.33
2560 2710 3.060138 GTGCGATCGACAAACTACAACAA 60.060 43.478 21.57 0.00 0.00 2.83
2561 2711 3.743911 TGCGATCGACAAACTACAACAAT 59.256 39.130 21.57 0.00 0.00 2.71
2562 2712 4.924462 TGCGATCGACAAACTACAACAATA 59.076 37.500 21.57 0.00 0.00 1.90
2563 2713 5.405873 TGCGATCGACAAACTACAACAATAA 59.594 36.000 21.57 0.00 0.00 1.40
2564 2714 5.726679 GCGATCGACAAACTACAACAATAAC 59.273 40.000 21.57 0.00 0.00 1.89
2565 2715 6.238508 CGATCGACAAACTACAACAATAACC 58.761 40.000 10.26 0.00 0.00 2.85
2566 2716 6.128769 CGATCGACAAACTACAACAATAACCA 60.129 38.462 10.26 0.00 0.00 3.67
2567 2717 7.412563 CGATCGACAAACTACAACAATAACCAT 60.413 37.037 10.26 0.00 0.00 3.55
2568 2718 8.780846 ATCGACAAACTACAACAATAACCATA 57.219 30.769 0.00 0.00 0.00 2.74
2569 2719 8.780846 TCGACAAACTACAACAATAACCATAT 57.219 30.769 0.00 0.00 0.00 1.78
2570 2720 8.875803 TCGACAAACTACAACAATAACCATATC 58.124 33.333 0.00 0.00 0.00 1.63
2571 2721 8.120465 CGACAAACTACAACAATAACCATATCC 58.880 37.037 0.00 0.00 0.00 2.59
2572 2722 7.981142 ACAAACTACAACAATAACCATATCCG 58.019 34.615 0.00 0.00 0.00 4.18
2573 2723 6.613755 AACTACAACAATAACCATATCCGC 57.386 37.500 0.00 0.00 0.00 5.54
2574 2724 5.676552 ACTACAACAATAACCATATCCGCA 58.323 37.500 0.00 0.00 0.00 5.69
2575 2725 4.893424 ACAACAATAACCATATCCGCAC 57.107 40.909 0.00 0.00 0.00 5.34
2576 2726 3.630312 ACAACAATAACCATATCCGCACC 59.370 43.478 0.00 0.00 0.00 5.01
2577 2727 3.569194 ACAATAACCATATCCGCACCA 57.431 42.857 0.00 0.00 0.00 4.17
2578 2728 3.892284 ACAATAACCATATCCGCACCAA 58.108 40.909 0.00 0.00 0.00 3.67
2579 2729 3.630312 ACAATAACCATATCCGCACCAAC 59.370 43.478 0.00 0.00 0.00 3.77
2580 2730 3.857157 ATAACCATATCCGCACCAACT 57.143 42.857 0.00 0.00 0.00 3.16
2581 2731 4.967084 ATAACCATATCCGCACCAACTA 57.033 40.909 0.00 0.00 0.00 2.24
2582 2732 3.857157 AACCATATCCGCACCAACTAT 57.143 42.857 0.00 0.00 0.00 2.12
2583 2733 3.402628 ACCATATCCGCACCAACTATC 57.597 47.619 0.00 0.00 0.00 2.08
2584 2734 2.972713 ACCATATCCGCACCAACTATCT 59.027 45.455 0.00 0.00 0.00 1.98
2585 2735 3.006967 ACCATATCCGCACCAACTATCTC 59.993 47.826 0.00 0.00 0.00 2.75
2586 2736 3.006859 CCATATCCGCACCAACTATCTCA 59.993 47.826 0.00 0.00 0.00 3.27
2587 2737 4.323028 CCATATCCGCACCAACTATCTCAT 60.323 45.833 0.00 0.00 0.00 2.90
2588 2738 2.602257 TCCGCACCAACTATCTCATG 57.398 50.000 0.00 0.00 0.00 3.07
2589 2739 2.107366 TCCGCACCAACTATCTCATGA 58.893 47.619 0.00 0.00 0.00 3.07
2590 2740 2.159099 TCCGCACCAACTATCTCATGAC 60.159 50.000 0.00 0.00 0.00 3.06
2591 2741 2.418609 CCGCACCAACTATCTCATGACA 60.419 50.000 0.00 0.00 0.00 3.58
2592 2742 3.461061 CGCACCAACTATCTCATGACAT 58.539 45.455 0.00 0.00 0.00 3.06
2593 2743 3.492383 CGCACCAACTATCTCATGACATC 59.508 47.826 0.00 0.00 0.00 3.06
2594 2744 4.445453 GCACCAACTATCTCATGACATCA 58.555 43.478 0.00 0.00 0.00 3.07
2595 2745 4.272018 GCACCAACTATCTCATGACATCAC 59.728 45.833 0.00 0.00 0.00 3.06
2596 2746 5.422145 CACCAACTATCTCATGACATCACA 58.578 41.667 0.00 0.00 0.00 3.58
2597 2747 6.053650 CACCAACTATCTCATGACATCACAT 58.946 40.000 0.00 0.00 0.00 3.21
2598 2748 6.018180 CACCAACTATCTCATGACATCACATG 60.018 42.308 0.00 0.00 46.01 3.21
2599 2749 5.469084 CCAACTATCTCATGACATCACATGG 59.531 44.000 0.00 0.00 45.10 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 7.759489 ACAAATCCAATTGCTAAGTTGACTA 57.241 32.000 15.87 0.00 33.52 2.59
122 123 9.995003 AAATATAGAGCAAAAACAACAAATCCA 57.005 25.926 0.00 0.00 0.00 3.41
179 180 9.366216 GGAAAGAAATAAAAAGCGAATATGGTT 57.634 29.630 0.00 0.00 0.00 3.67
182 183 9.023967 CCTGGAAAGAAATAAAAAGCGAATATG 57.976 33.333 0.00 0.00 0.00 1.78
184 185 8.343168 TCCTGGAAAGAAATAAAAAGCGAATA 57.657 30.769 0.00 0.00 0.00 1.75
275 278 3.323979 TGTCTGGAACTAGGGACAAAGAC 59.676 47.826 0.00 0.57 36.04 3.01
393 396 0.393132 TTATTTGATCCGTGCGCCCA 60.393 50.000 4.18 0.00 0.00 5.36
394 397 0.307760 CTTATTTGATCCGTGCGCCC 59.692 55.000 4.18 0.00 0.00 6.13
418 421 6.739331 TTGTAACATGAGGGGAAAATTGTT 57.261 33.333 0.00 0.00 0.00 2.83
419 422 6.933514 ATTGTAACATGAGGGGAAAATTGT 57.066 33.333 0.00 0.00 0.00 2.71
420 423 9.717942 TTTTATTGTAACATGAGGGGAAAATTG 57.282 29.630 0.00 0.00 0.00 2.32
422 425 9.942850 CTTTTTATTGTAACATGAGGGGAAAAT 57.057 29.630 0.00 0.00 0.00 1.82
423 426 9.148879 TCTTTTTATTGTAACATGAGGGGAAAA 57.851 29.630 0.00 0.00 0.00 2.29
435 438 8.647226 AGCATGCGAAATTCTTTTTATTGTAAC 58.353 29.630 13.01 0.00 0.00 2.50
485 488 3.987868 GCATTATGGAAAGATGCATGCAG 59.012 43.478 26.69 8.40 44.18 4.41
513 516 1.140452 AGCCAAGCACGATCATCATCT 59.860 47.619 0.00 0.00 0.00 2.90
515 518 2.103771 AGTAGCCAAGCACGATCATCAT 59.896 45.455 0.00 0.00 0.00 2.45
588 591 2.107950 CCTGACTAAAATCACGGGCA 57.892 50.000 0.00 0.00 0.00 5.36
591 594 1.737793 GTGGCCTGACTAAAATCACGG 59.262 52.381 3.32 0.00 0.00 4.94
625 628 9.314321 ACACATTTCTTATAGTAAAGTGGATCG 57.686 33.333 0.00 0.00 0.00 3.69
638 641 6.468333 TGCGGTACCTACACATTTCTTATA 57.532 37.500 10.90 0.00 0.00 0.98
653 656 3.813724 AGAAGAAGAAAAGTTGCGGTACC 59.186 43.478 0.16 0.16 0.00 3.34
654 657 5.419760 AAGAAGAAGAAAAGTTGCGGTAC 57.580 39.130 0.00 0.00 0.00 3.34
655 658 5.587043 TGAAAGAAGAAGAAAAGTTGCGGTA 59.413 36.000 0.00 0.00 0.00 4.02
738 771 2.642311 TGGAGACCAACCATATGTGTGT 59.358 45.455 1.24 0.00 32.03 3.72
740 773 2.239654 CCTGGAGACCAACCATATGTGT 59.760 50.000 1.24 0.00 36.79 3.72
750 783 1.628846 GCCTACTTTCCTGGAGACCAA 59.371 52.381 0.00 0.00 30.80 3.67
764 797 5.672421 ACTACTCCATTAAAACGCCTACT 57.328 39.130 0.00 0.00 0.00 2.57
775 808 7.563924 ACTGTAGGATTAGCAACTACTCCATTA 59.436 37.037 12.05 0.00 37.98 1.90
776 809 6.384305 ACTGTAGGATTAGCAACTACTCCATT 59.616 38.462 12.05 0.00 37.98 3.16
777 810 5.900123 ACTGTAGGATTAGCAACTACTCCAT 59.100 40.000 12.05 2.62 37.98 3.41
778 811 5.127194 CACTGTAGGATTAGCAACTACTCCA 59.873 44.000 12.05 0.00 37.98 3.86
779 812 5.127356 ACACTGTAGGATTAGCAACTACTCC 59.873 44.000 3.47 3.47 38.27 3.85
780 813 6.127703 TGACACTGTAGGATTAGCAACTACTC 60.128 42.308 0.00 0.00 38.27 2.59
781 814 5.715279 TGACACTGTAGGATTAGCAACTACT 59.285 40.000 0.00 0.00 38.27 2.57
782 815 5.805994 GTGACACTGTAGGATTAGCAACTAC 59.194 44.000 0.00 0.00 38.02 2.73
783 816 5.715279 AGTGACACTGTAGGATTAGCAACTA 59.285 40.000 7.47 0.00 0.00 2.24
784 817 4.528596 AGTGACACTGTAGGATTAGCAACT 59.471 41.667 7.47 0.00 0.00 3.16
785 818 4.822026 AGTGACACTGTAGGATTAGCAAC 58.178 43.478 7.47 0.00 0.00 4.17
786 819 5.949952 TCTAGTGACACTGTAGGATTAGCAA 59.050 40.000 18.58 0.00 0.00 3.91
787 820 5.506708 TCTAGTGACACTGTAGGATTAGCA 58.493 41.667 18.58 0.00 0.00 3.49
788 821 6.294286 GGATCTAGTGACACTGTAGGATTAGC 60.294 46.154 18.58 5.30 0.00 3.09
789 822 7.001674 AGGATCTAGTGACACTGTAGGATTAG 58.998 42.308 18.58 4.96 0.00 1.73
790 823 6.912426 AGGATCTAGTGACACTGTAGGATTA 58.088 40.000 18.58 0.00 0.00 1.75
791 824 5.772004 AGGATCTAGTGACACTGTAGGATT 58.228 41.667 18.58 0.00 0.00 3.01
792 825 5.396057 AGGATCTAGTGACACTGTAGGAT 57.604 43.478 18.58 14.51 0.00 3.24
793 826 4.864483 AGGATCTAGTGACACTGTAGGA 57.136 45.455 18.58 10.76 0.00 2.94
794 827 5.686753 AGTAGGATCTAGTGACACTGTAGG 58.313 45.833 18.58 5.96 0.00 3.18
862 944 2.282816 TGGAAATGGCCGTGGTGG 60.283 61.111 0.00 0.00 42.50 4.61
874 957 4.093261 GCGTAGGTTTTTATAGCGTGGAAA 59.907 41.667 0.00 0.00 0.00 3.13
900 983 4.741781 GTGCGTGTGTGCGATGCC 62.742 66.667 0.00 0.00 37.81 4.40
963 1053 6.401394 GCTGATGCTATATATGGTGTCTGAA 58.599 40.000 0.00 0.00 36.03 3.02
964 1054 5.393461 CGCTGATGCTATATATGGTGTCTGA 60.393 44.000 0.00 0.00 36.97 3.27
965 1055 4.802563 CGCTGATGCTATATATGGTGTCTG 59.197 45.833 0.00 1.45 36.97 3.51
966 1056 4.142071 CCGCTGATGCTATATATGGTGTCT 60.142 45.833 0.00 0.00 36.97 3.41
967 1057 4.115516 CCGCTGATGCTATATATGGTGTC 58.884 47.826 0.00 0.00 36.97 3.67
968 1058 3.679917 GCCGCTGATGCTATATATGGTGT 60.680 47.826 0.00 0.00 36.97 4.16
992 1082 4.152625 GAGCGCGCATGGTGTCAC 62.153 66.667 35.10 8.52 0.00 3.67
993 1083 4.678499 TGAGCGCGCATGGTGTCA 62.678 61.111 35.10 23.57 0.00 3.58
1018 1108 4.760047 GGCGACACGGTGCAGGAT 62.760 66.667 8.30 0.00 0.00 3.24
1147 1241 0.402566 AGCAGGGAGGCCAGGATTAT 60.403 55.000 5.01 0.00 0.00 1.28
1149 1243 2.286732 AGCAGGGAGGCCAGGATT 60.287 61.111 5.01 0.00 0.00 3.01
1272 1378 2.106938 GGGAGCGCATCGATGTCA 59.893 61.111 25.47 0.00 0.00 3.58
1291 1397 1.343821 CGGCAGCGAAACATACGAC 59.656 57.895 0.00 0.00 0.00 4.34
1292 1398 1.080366 ACGGCAGCGAAACATACGA 60.080 52.632 0.00 0.00 0.00 3.43
1296 1402 3.737172 GCCACGGCAGCGAAACAT 61.737 61.111 2.36 0.00 41.49 2.71
1298 1404 4.090057 GAGCCACGGCAGCGAAAC 62.090 66.667 11.35 0.00 44.88 2.78
1310 1416 3.315142 GATGACTGCGGTGGAGCCA 62.315 63.158 0.80 0.00 36.97 4.75
1506 1633 0.386476 TGTTGTTCGTCGCCACTACT 59.614 50.000 9.23 0.00 0.00 2.57
1516 1643 0.597637 CTCTCGCACCTGTTGTTCGT 60.598 55.000 0.00 0.00 35.04 3.85
1561 1692 2.880879 CATGTCCTCGACGCCACG 60.881 66.667 0.00 0.00 34.95 4.94
1598 1732 5.356470 CAGGCTAGCTAAAAAGCAGAGAATT 59.644 40.000 15.72 0.00 40.61 2.17
1730 1864 5.236047 GCAAATAACACAATGTTTTGCTGGA 59.764 36.000 19.89 0.00 44.41 3.86
1745 1879 5.105877 ACGAGTACTAGCAGAGCAAATAACA 60.106 40.000 2.52 0.00 0.00 2.41
1746 1880 5.230306 CACGAGTACTAGCAGAGCAAATAAC 59.770 44.000 2.52 0.00 0.00 1.89
1747 1881 5.340803 CACGAGTACTAGCAGAGCAAATAA 58.659 41.667 2.52 0.00 0.00 1.40
1748 1882 4.733815 GCACGAGTACTAGCAGAGCAAATA 60.734 45.833 2.52 0.00 0.00 1.40
1749 1883 3.775202 CACGAGTACTAGCAGAGCAAAT 58.225 45.455 2.52 0.00 0.00 2.32
1750 1884 2.671351 GCACGAGTACTAGCAGAGCAAA 60.671 50.000 2.52 0.00 0.00 3.68
1751 1885 1.135373 GCACGAGTACTAGCAGAGCAA 60.135 52.381 2.52 0.00 0.00 3.91
1752 1886 0.452184 GCACGAGTACTAGCAGAGCA 59.548 55.000 2.52 0.00 0.00 4.26
1753 1887 0.452184 TGCACGAGTACTAGCAGAGC 59.548 55.000 11.74 7.82 32.48 4.09
1819 1953 1.512926 CGGCCGATAAATGAAGAGGG 58.487 55.000 24.07 0.00 0.00 4.30
1852 1986 6.073331 ACGCAAAGAAGAAGAAGAAGATGAAG 60.073 38.462 0.00 0.00 0.00 3.02
1855 1989 5.049818 ACACGCAAAGAAGAAGAAGAAGATG 60.050 40.000 0.00 0.00 0.00 2.90
1865 1999 4.427096 TGTTTTCACACGCAAAGAAGAA 57.573 36.364 0.00 0.00 0.00 2.52
1867 2001 4.562394 ACATTGTTTTCACACGCAAAGAAG 59.438 37.500 0.00 0.00 30.32 2.85
1870 2004 6.509317 AATACATTGTTTTCACACGCAAAG 57.491 33.333 0.00 0.00 30.32 2.77
1877 2013 8.511321 GGTGATGAGTAATACATTGTTTTCACA 58.489 33.333 0.00 0.00 0.00 3.58
1910 2046 6.590068 AGAGCTAGCTGTGATTGATTGTATT 58.410 36.000 24.99 0.00 0.00 1.89
2291 2441 3.163467 ACGGAGGGAGTATATGTTAGGC 58.837 50.000 0.00 0.00 0.00 3.93
2307 2457 3.481467 GCGACAAGTAATTCGAAACGGAG 60.481 47.826 0.00 0.00 37.43 4.63
2311 2461 2.473376 CCCGCGACAAGTAATTCGAAAC 60.473 50.000 8.23 0.00 37.43 2.78
2312 2462 1.727880 CCCGCGACAAGTAATTCGAAA 59.272 47.619 8.23 0.00 37.43 3.46
2313 2463 1.337074 ACCCGCGACAAGTAATTCGAA 60.337 47.619 8.23 0.00 37.43 3.71
2314 2464 0.244450 ACCCGCGACAAGTAATTCGA 59.756 50.000 8.23 0.00 37.43 3.71
2315 2465 1.073177 AACCCGCGACAAGTAATTCG 58.927 50.000 8.23 0.00 38.31 3.34
2316 2466 3.485633 GAAAACCCGCGACAAGTAATTC 58.514 45.455 8.23 4.73 0.00 2.17
2317 2467 2.096119 CGAAAACCCGCGACAAGTAATT 60.096 45.455 8.23 0.00 0.00 1.40
2318 2468 1.461897 CGAAAACCCGCGACAAGTAAT 59.538 47.619 8.23 0.00 0.00 1.89
2319 2469 0.860533 CGAAAACCCGCGACAAGTAA 59.139 50.000 8.23 0.00 0.00 2.24
2320 2470 0.031857 TCGAAAACCCGCGACAAGTA 59.968 50.000 8.23 0.00 0.00 2.24
2321 2471 0.601841 ATCGAAAACCCGCGACAAGT 60.602 50.000 8.23 0.00 39.56 3.16
2322 2472 1.352114 TATCGAAAACCCGCGACAAG 58.648 50.000 8.23 0.00 39.56 3.16
2323 2473 1.793258 TTATCGAAAACCCGCGACAA 58.207 45.000 8.23 0.00 39.56 3.18
2324 2474 1.793258 TTTATCGAAAACCCGCGACA 58.207 45.000 8.23 0.00 39.56 4.35
2325 2475 2.538132 CCATTTATCGAAAACCCGCGAC 60.538 50.000 8.23 0.00 39.56 5.19
2326 2476 1.666700 CCATTTATCGAAAACCCGCGA 59.333 47.619 8.23 0.00 41.14 5.87
2327 2477 1.399089 ACCATTTATCGAAAACCCGCG 59.601 47.619 0.00 0.00 0.00 6.46
2328 2478 2.420722 TCACCATTTATCGAAAACCCGC 59.579 45.455 0.00 0.00 0.00 6.13
2329 2479 4.688511 TTCACCATTTATCGAAAACCCG 57.311 40.909 0.00 0.00 0.00 5.28
2330 2480 7.899178 AAAATTCACCATTTATCGAAAACCC 57.101 32.000 0.00 0.00 33.60 4.11
2347 2497 9.761504 TGCTTCATTTTGAGTCAATAAAATTCA 57.238 25.926 6.36 0.00 35.07 2.57
2350 2500 9.932207 TGATGCTTCATTTTGAGTCAATAAAAT 57.068 25.926 6.36 0.85 37.06 1.82
2351 2501 9.761504 TTGATGCTTCATTTTGAGTCAATAAAA 57.238 25.926 6.36 0.00 0.00 1.52
2352 2502 9.414295 CTTGATGCTTCATTTTGAGTCAATAAA 57.586 29.630 6.36 0.00 0.00 1.40
2353 2503 8.795513 TCTTGATGCTTCATTTTGAGTCAATAA 58.204 29.630 6.36 4.84 0.00 1.40
2354 2504 8.339344 TCTTGATGCTTCATTTTGAGTCAATA 57.661 30.769 6.36 1.98 0.00 1.90
2355 2505 7.223260 TCTTGATGCTTCATTTTGAGTCAAT 57.777 32.000 6.36 0.00 0.00 2.57
2356 2506 6.638096 TCTTGATGCTTCATTTTGAGTCAA 57.362 33.333 0.08 0.08 0.00 3.18
2357 2507 6.487668 TCTTCTTGATGCTTCATTTTGAGTCA 59.512 34.615 2.75 0.00 0.00 3.41
2358 2508 6.906659 TCTTCTTGATGCTTCATTTTGAGTC 58.093 36.000 2.75 0.00 0.00 3.36
2359 2509 6.889301 TCTTCTTGATGCTTCATTTTGAGT 57.111 33.333 2.75 0.00 0.00 3.41
2360 2510 8.456471 TGTATCTTCTTGATGCTTCATTTTGAG 58.544 33.333 2.75 0.00 38.39 3.02
2361 2511 8.339344 TGTATCTTCTTGATGCTTCATTTTGA 57.661 30.769 2.75 1.59 38.39 2.69
2365 2515 9.399797 TGTTATGTATCTTCTTGATGCTTCATT 57.600 29.630 2.75 0.00 38.39 2.57
2366 2516 8.834465 GTGTTATGTATCTTCTTGATGCTTCAT 58.166 33.333 2.75 0.00 38.39 2.57
2367 2517 7.823799 TGTGTTATGTATCTTCTTGATGCTTCA 59.176 33.333 0.00 0.00 38.39 3.02
2368 2518 8.201554 TGTGTTATGTATCTTCTTGATGCTTC 57.798 34.615 0.00 0.00 38.39 3.86
2369 2519 7.826252 ACTGTGTTATGTATCTTCTTGATGCTT 59.174 33.333 0.00 0.00 38.39 3.91
2370 2520 7.279536 CACTGTGTTATGTATCTTCTTGATGCT 59.720 37.037 0.00 0.00 38.39 3.79
2371 2521 7.278646 TCACTGTGTTATGTATCTTCTTGATGC 59.721 37.037 7.79 0.00 38.12 3.91
2372 2522 8.707938 TCACTGTGTTATGTATCTTCTTGATG 57.292 34.615 7.79 0.00 36.65 3.07
2373 2523 7.493971 GCTCACTGTGTTATGTATCTTCTTGAT 59.506 37.037 7.79 0.00 39.11 2.57
2374 2524 6.813649 GCTCACTGTGTTATGTATCTTCTTGA 59.186 38.462 7.79 0.00 0.00 3.02
2375 2525 6.591448 TGCTCACTGTGTTATGTATCTTCTTG 59.409 38.462 7.79 0.00 0.00 3.02
2376 2526 6.701340 TGCTCACTGTGTTATGTATCTTCTT 58.299 36.000 7.79 0.00 0.00 2.52
2377 2527 6.286240 TGCTCACTGTGTTATGTATCTTCT 57.714 37.500 7.79 0.00 0.00 2.85
2378 2528 7.706607 TGTATGCTCACTGTGTTATGTATCTTC 59.293 37.037 7.79 0.03 0.00 2.87
2379 2529 7.492669 GTGTATGCTCACTGTGTTATGTATCTT 59.507 37.037 7.79 0.00 35.68 2.40
2380 2530 6.980978 GTGTATGCTCACTGTGTTATGTATCT 59.019 38.462 7.79 0.00 35.68 1.98
2381 2531 6.201044 GGTGTATGCTCACTGTGTTATGTATC 59.799 42.308 7.79 0.00 38.28 2.24
2382 2532 6.049149 GGTGTATGCTCACTGTGTTATGTAT 58.951 40.000 7.79 5.06 38.28 2.29
2383 2533 5.416083 GGTGTATGCTCACTGTGTTATGTA 58.584 41.667 7.79 0.00 38.28 2.29
2384 2534 4.253685 GGTGTATGCTCACTGTGTTATGT 58.746 43.478 7.79 0.00 38.28 2.29
2385 2535 3.623060 GGGTGTATGCTCACTGTGTTATG 59.377 47.826 7.79 0.00 38.28 1.90
2386 2536 3.678806 CGGGTGTATGCTCACTGTGTTAT 60.679 47.826 7.79 3.95 38.28 1.89
2387 2537 2.353307 CGGGTGTATGCTCACTGTGTTA 60.353 50.000 7.79 0.00 38.28 2.41
2388 2538 1.608025 CGGGTGTATGCTCACTGTGTT 60.608 52.381 7.79 0.00 38.28 3.32
2389 2539 0.037326 CGGGTGTATGCTCACTGTGT 60.037 55.000 7.79 0.00 38.28 3.72
2390 2540 0.740868 CCGGGTGTATGCTCACTGTG 60.741 60.000 0.17 0.17 38.28 3.66
2391 2541 1.596934 CCGGGTGTATGCTCACTGT 59.403 57.895 0.00 0.00 38.28 3.55
2392 2542 1.815421 GCCGGGTGTATGCTCACTG 60.815 63.158 2.18 2.15 38.28 3.66
2393 2543 2.584608 GCCGGGTGTATGCTCACT 59.415 61.111 2.18 0.00 38.28 3.41
2394 2544 2.513897 GGCCGGGTGTATGCTCAC 60.514 66.667 2.18 0.00 37.57 3.51
2395 2545 2.687200 AGGCCGGGTGTATGCTCA 60.687 61.111 2.18 0.00 0.00 4.26
2396 2546 2.109181 GAGGCCGGGTGTATGCTC 59.891 66.667 2.18 0.00 0.00 4.26
2397 2547 2.365635 AGAGGCCGGGTGTATGCT 60.366 61.111 2.18 0.00 0.00 3.79
2398 2548 2.203070 CAGAGGCCGGGTGTATGC 60.203 66.667 2.18 0.00 0.00 3.14
2399 2549 2.203070 GCAGAGGCCGGGTGTATG 60.203 66.667 2.18 0.00 0.00 2.39
2400 2550 0.762842 TATGCAGAGGCCGGGTGTAT 60.763 55.000 2.18 3.94 40.13 2.29
2401 2551 1.382009 TATGCAGAGGCCGGGTGTA 60.382 57.895 2.18 0.00 40.13 2.90
2402 2552 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
2403 2553 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
2404 2554 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
2405 2555 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
2406 2556 1.291588 CTAGCTATGCAGAGGCCGG 59.708 63.158 10.92 0.00 40.13 6.13
2407 2557 1.181741 TCCTAGCTATGCAGAGGCCG 61.182 60.000 10.92 0.23 40.13 6.13
2408 2558 1.066286 CATCCTAGCTATGCAGAGGCC 60.066 57.143 10.92 0.00 40.13 5.19
2409 2559 2.383368 CATCCTAGCTATGCAGAGGC 57.617 55.000 10.92 5.36 35.01 4.70
2416 2566 2.141517 GCTGTGTGCATCCTAGCTATG 58.858 52.381 0.00 0.00 42.31 2.23
2417 2567 1.071385 GGCTGTGTGCATCCTAGCTAT 59.929 52.381 12.70 0.00 45.15 2.97
2418 2568 0.465705 GGCTGTGTGCATCCTAGCTA 59.534 55.000 12.70 0.00 45.15 3.32
2419 2569 1.222936 GGCTGTGTGCATCCTAGCT 59.777 57.895 12.70 0.00 45.15 3.32
2420 2570 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
2421 2571 1.089920 GTTGGCTGTGTGCATCCTAG 58.910 55.000 0.00 0.00 45.15 3.02
2422 2572 0.399833 TGTTGGCTGTGTGCATCCTA 59.600 50.000 0.00 0.00 45.15 2.94
2423 2573 1.151221 TGTTGGCTGTGTGCATCCT 59.849 52.632 0.00 0.00 45.15 3.24
2424 2574 1.286880 GTGTTGGCTGTGTGCATCC 59.713 57.895 0.00 0.00 45.15 3.51
2425 2575 1.286880 GGTGTTGGCTGTGTGCATC 59.713 57.895 0.00 0.00 45.15 3.91
2426 2576 1.455402 TGGTGTTGGCTGTGTGCAT 60.455 52.632 0.00 0.00 45.15 3.96
2427 2577 2.044551 TGGTGTTGGCTGTGTGCA 60.045 55.556 0.00 0.00 45.15 4.57
2428 2578 2.412937 GTGGTGTTGGCTGTGTGC 59.587 61.111 0.00 0.00 41.94 4.57
2429 2579 1.311651 TGTGTGGTGTTGGCTGTGTG 61.312 55.000 0.00 0.00 0.00 3.82
2430 2580 1.001517 TGTGTGGTGTTGGCTGTGT 60.002 52.632 0.00 0.00 0.00 3.72
2431 2581 1.433064 GTGTGTGGTGTTGGCTGTG 59.567 57.895 0.00 0.00 0.00 3.66
2432 2582 2.112198 CGTGTGTGGTGTTGGCTGT 61.112 57.895 0.00 0.00 0.00 4.40
2433 2583 2.715005 CGTGTGTGGTGTTGGCTG 59.285 61.111 0.00 0.00 0.00 4.85
2434 2584 3.209097 GCGTGTGTGGTGTTGGCT 61.209 61.111 0.00 0.00 0.00 4.75
2435 2585 3.513438 TGCGTGTGTGGTGTTGGC 61.513 61.111 0.00 0.00 0.00 4.52
2436 2586 2.407210 GTGCGTGTGTGGTGTTGG 59.593 61.111 0.00 0.00 0.00 3.77
2437 2587 1.422179 TACGTGCGTGTGTGGTGTTG 61.422 55.000 7.55 0.00 0.00 3.33
2438 2588 0.740164 TTACGTGCGTGTGTGGTGTT 60.740 50.000 7.55 0.00 0.00 3.32
2439 2589 0.740164 TTTACGTGCGTGTGTGGTGT 60.740 50.000 7.55 0.00 0.00 4.16
2440 2590 0.374063 TTTTACGTGCGTGTGTGGTG 59.626 50.000 7.55 0.00 0.00 4.17
2441 2591 1.085091 TTTTTACGTGCGTGTGTGGT 58.915 45.000 7.55 0.00 0.00 4.16
2442 2592 3.899836 TTTTTACGTGCGTGTGTGG 57.100 47.368 7.55 0.00 0.00 4.17
2457 2607 5.590530 TTGCTAGTTGTGGACATGTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
2458 2608 5.127031 ACTTTGCTAGTTGTGGACATGTTTT 59.873 36.000 0.00 0.00 31.29 2.43
2459 2609 4.644685 ACTTTGCTAGTTGTGGACATGTTT 59.355 37.500 0.00 0.00 31.29 2.83
2460 2610 4.207165 ACTTTGCTAGTTGTGGACATGTT 58.793 39.130 0.00 0.00 31.29 2.71
2461 2611 3.815401 GACTTTGCTAGTTGTGGACATGT 59.185 43.478 0.00 0.00 37.17 3.21
2462 2612 3.814842 TGACTTTGCTAGTTGTGGACATG 59.185 43.478 0.00 0.00 37.17 3.21
2463 2613 4.085357 TGACTTTGCTAGTTGTGGACAT 57.915 40.909 0.00 0.00 37.17 3.06
2464 2614 3.552132 TGACTTTGCTAGTTGTGGACA 57.448 42.857 0.00 0.00 37.17 4.02
2465 2615 7.764443 TCTTATATGACTTTGCTAGTTGTGGAC 59.236 37.037 0.00 0.00 37.17 4.02
2466 2616 7.764443 GTCTTATATGACTTTGCTAGTTGTGGA 59.236 37.037 10.70 0.00 37.17 4.02
2467 2617 7.011482 GGTCTTATATGACTTTGCTAGTTGTGG 59.989 40.741 15.98 0.00 37.17 4.17
2468 2618 7.549134 TGGTCTTATATGACTTTGCTAGTTGTG 59.451 37.037 15.98 0.00 37.17 3.33
2469 2619 7.620880 TGGTCTTATATGACTTTGCTAGTTGT 58.379 34.615 15.98 0.00 37.17 3.32
2470 2620 8.492673 TTGGTCTTATATGACTTTGCTAGTTG 57.507 34.615 15.98 0.00 37.17 3.16
2471 2621 9.167311 CTTTGGTCTTATATGACTTTGCTAGTT 57.833 33.333 15.98 0.00 37.17 2.24
2472 2622 7.281100 GCTTTGGTCTTATATGACTTTGCTAGT 59.719 37.037 15.98 0.00 40.71 2.57
2473 2623 7.497249 AGCTTTGGTCTTATATGACTTTGCTAG 59.503 37.037 15.98 8.24 37.16 3.42
2474 2624 7.338710 AGCTTTGGTCTTATATGACTTTGCTA 58.661 34.615 15.98 0.00 37.16 3.49
2475 2625 6.183347 AGCTTTGGTCTTATATGACTTTGCT 58.817 36.000 15.98 15.76 37.16 3.91
2476 2626 6.442513 AGCTTTGGTCTTATATGACTTTGC 57.557 37.500 15.98 14.33 37.16 3.68
2477 2627 8.072567 GCATAGCTTTGGTCTTATATGACTTTG 58.927 37.037 15.98 7.54 37.16 2.77
2478 2628 7.041780 CGCATAGCTTTGGTCTTATATGACTTT 60.042 37.037 15.98 2.42 37.16 2.66
2479 2629 6.425114 CGCATAGCTTTGGTCTTATATGACTT 59.575 38.462 15.98 2.16 37.16 3.01
2480 2630 5.928839 CGCATAGCTTTGGTCTTATATGACT 59.071 40.000 15.98 1.32 37.16 3.41
2481 2631 5.696724 ACGCATAGCTTTGGTCTTATATGAC 59.303 40.000 9.70 9.70 36.31 3.06
2482 2632 5.853936 ACGCATAGCTTTGGTCTTATATGA 58.146 37.500 6.29 0.00 0.00 2.15
2483 2633 6.311445 CCTACGCATAGCTTTGGTCTTATATG 59.689 42.308 6.29 0.00 0.00 1.78
2484 2634 6.398918 CCTACGCATAGCTTTGGTCTTATAT 58.601 40.000 6.29 0.00 0.00 0.86
2485 2635 5.779922 CCTACGCATAGCTTTGGTCTTATA 58.220 41.667 6.29 0.00 0.00 0.98
2486 2636 4.632153 CCTACGCATAGCTTTGGTCTTAT 58.368 43.478 6.29 0.00 0.00 1.73
2487 2637 3.740141 GCCTACGCATAGCTTTGGTCTTA 60.740 47.826 6.29 0.00 34.03 2.10
2488 2638 2.906354 CCTACGCATAGCTTTGGTCTT 58.094 47.619 6.29 0.00 0.00 3.01
2489 2639 1.473434 GCCTACGCATAGCTTTGGTCT 60.473 52.381 6.29 0.00 34.03 3.85
2490 2640 0.938008 GCCTACGCATAGCTTTGGTC 59.062 55.000 6.29 0.00 34.03 4.02
2491 2641 0.810031 CGCCTACGCATAGCTTTGGT 60.810 55.000 6.29 5.16 34.03 3.67
2492 2642 0.529773 TCGCCTACGCATAGCTTTGG 60.530 55.000 6.29 0.00 39.84 3.28
2493 2643 0.855349 CTCGCCTACGCATAGCTTTG 59.145 55.000 0.00 0.00 39.84 2.77
2494 2644 0.744874 TCTCGCCTACGCATAGCTTT 59.255 50.000 0.00 0.00 39.84 3.51
2495 2645 0.744874 TTCTCGCCTACGCATAGCTT 59.255 50.000 0.00 0.00 39.84 3.74
2496 2646 0.744874 TTTCTCGCCTACGCATAGCT 59.255 50.000 0.00 0.00 39.84 3.32
2497 2647 1.567504 TTTTCTCGCCTACGCATAGC 58.432 50.000 0.00 0.00 39.84 2.97
2516 2666 4.463891 ACATCAGATCGCTTTGGGATTTTT 59.536 37.500 0.00 0.00 35.38 1.94
2517 2667 4.019174 ACATCAGATCGCTTTGGGATTTT 58.981 39.130 0.00 0.00 35.38 1.82
2518 2668 3.379372 CACATCAGATCGCTTTGGGATTT 59.621 43.478 0.00 0.00 35.38 2.17
2519 2669 2.947652 CACATCAGATCGCTTTGGGATT 59.052 45.455 0.00 0.00 35.38 3.01
2520 2670 2.569059 CACATCAGATCGCTTTGGGAT 58.431 47.619 0.00 0.00 37.92 3.85
2521 2671 2.013563 GCACATCAGATCGCTTTGGGA 61.014 52.381 0.00 0.00 0.00 4.37
2522 2672 0.379669 GCACATCAGATCGCTTTGGG 59.620 55.000 0.00 0.00 0.00 4.12
2523 2673 0.027194 CGCACATCAGATCGCTTTGG 59.973 55.000 0.86 0.00 0.00 3.28
2524 2674 1.001624 TCGCACATCAGATCGCTTTG 58.998 50.000 0.86 0.00 0.00 2.77
2525 2675 1.863454 GATCGCACATCAGATCGCTTT 59.137 47.619 0.86 0.00 34.68 3.51
2526 2676 1.495878 GATCGCACATCAGATCGCTT 58.504 50.000 0.86 0.00 34.68 4.68
2527 2677 3.191903 GATCGCACATCAGATCGCT 57.808 52.632 0.86 0.00 34.68 4.93
2530 2680 2.125461 TGTCGATCGCACATCAGATC 57.875 50.000 11.09 0.00 39.72 2.75
2531 2681 2.584492 TTGTCGATCGCACATCAGAT 57.416 45.000 11.09 0.00 0.00 2.90
2532 2682 1.992667 GTTTGTCGATCGCACATCAGA 59.007 47.619 11.09 0.00 0.00 3.27
2533 2683 1.995484 AGTTTGTCGATCGCACATCAG 59.005 47.619 11.09 0.00 0.00 2.90
2534 2684 2.078849 AGTTTGTCGATCGCACATCA 57.921 45.000 11.09 3.59 0.00 3.07
2535 2685 2.921121 TGTAGTTTGTCGATCGCACATC 59.079 45.455 11.09 11.30 0.00 3.06
2536 2686 2.954316 TGTAGTTTGTCGATCGCACAT 58.046 42.857 11.09 4.22 0.00 3.21
2537 2687 2.425578 TGTAGTTTGTCGATCGCACA 57.574 45.000 11.09 12.82 0.00 4.57
2538 2688 2.473609 TGTTGTAGTTTGTCGATCGCAC 59.526 45.455 11.09 10.27 0.00 5.34
2539 2689 2.745102 TGTTGTAGTTTGTCGATCGCA 58.255 42.857 11.09 9.23 0.00 5.10
2540 2690 3.781341 TTGTTGTAGTTTGTCGATCGC 57.219 42.857 11.09 6.41 0.00 4.58
2541 2691 6.128769 TGGTTATTGTTGTAGTTTGTCGATCG 60.129 38.462 9.36 9.36 0.00 3.69
2542 2692 7.124347 TGGTTATTGTTGTAGTTTGTCGATC 57.876 36.000 0.00 0.00 0.00 3.69
2543 2693 7.681939 ATGGTTATTGTTGTAGTTTGTCGAT 57.318 32.000 0.00 0.00 0.00 3.59
2544 2694 8.780846 ATATGGTTATTGTTGTAGTTTGTCGA 57.219 30.769 0.00 0.00 0.00 4.20
2545 2695 8.120465 GGATATGGTTATTGTTGTAGTTTGTCG 58.880 37.037 0.00 0.00 0.00 4.35
2546 2696 8.120465 CGGATATGGTTATTGTTGTAGTTTGTC 58.880 37.037 0.00 0.00 0.00 3.18
2547 2697 7.414762 GCGGATATGGTTATTGTTGTAGTTTGT 60.415 37.037 0.00 0.00 0.00 2.83
2548 2698 6.910433 GCGGATATGGTTATTGTTGTAGTTTG 59.090 38.462 0.00 0.00 0.00 2.93
2549 2699 6.600032 TGCGGATATGGTTATTGTTGTAGTTT 59.400 34.615 0.00 0.00 0.00 2.66
2550 2700 6.037830 GTGCGGATATGGTTATTGTTGTAGTT 59.962 38.462 0.00 0.00 0.00 2.24
2551 2701 5.526111 GTGCGGATATGGTTATTGTTGTAGT 59.474 40.000 0.00 0.00 0.00 2.73
2552 2702 5.049680 GGTGCGGATATGGTTATTGTTGTAG 60.050 44.000 0.00 0.00 0.00 2.74
2553 2703 4.817464 GGTGCGGATATGGTTATTGTTGTA 59.183 41.667 0.00 0.00 0.00 2.41
2554 2704 3.630312 GGTGCGGATATGGTTATTGTTGT 59.370 43.478 0.00 0.00 0.00 3.32
2555 2705 3.629855 TGGTGCGGATATGGTTATTGTTG 59.370 43.478 0.00 0.00 0.00 3.33
2556 2706 3.892284 TGGTGCGGATATGGTTATTGTT 58.108 40.909 0.00 0.00 0.00 2.83
2557 2707 3.569194 TGGTGCGGATATGGTTATTGT 57.431 42.857 0.00 0.00 0.00 2.71
2558 2708 3.882888 AGTTGGTGCGGATATGGTTATTG 59.117 43.478 0.00 0.00 0.00 1.90
2559 2709 4.164843 AGTTGGTGCGGATATGGTTATT 57.835 40.909 0.00 0.00 0.00 1.40
2560 2710 3.857157 AGTTGGTGCGGATATGGTTAT 57.143 42.857 0.00 0.00 0.00 1.89
2561 2711 4.591498 AGATAGTTGGTGCGGATATGGTTA 59.409 41.667 0.00 0.00 0.00 2.85
2562 2712 3.391296 AGATAGTTGGTGCGGATATGGTT 59.609 43.478 0.00 0.00 0.00 3.67
2563 2713 2.972713 AGATAGTTGGTGCGGATATGGT 59.027 45.455 0.00 0.00 0.00 3.55
2564 2714 3.006859 TGAGATAGTTGGTGCGGATATGG 59.993 47.826 0.00 0.00 0.00 2.74
2565 2715 4.257267 TGAGATAGTTGGTGCGGATATG 57.743 45.455 0.00 0.00 0.00 1.78
2566 2716 4.528206 TCATGAGATAGTTGGTGCGGATAT 59.472 41.667 0.00 0.00 0.00 1.63
2567 2717 3.895041 TCATGAGATAGTTGGTGCGGATA 59.105 43.478 0.00 0.00 0.00 2.59
2568 2718 2.700371 TCATGAGATAGTTGGTGCGGAT 59.300 45.455 0.00 0.00 0.00 4.18
2569 2719 2.107366 TCATGAGATAGTTGGTGCGGA 58.893 47.619 0.00 0.00 0.00 5.54
2570 2720 2.205074 GTCATGAGATAGTTGGTGCGG 58.795 52.381 0.00 0.00 0.00 5.69
2571 2721 2.892374 TGTCATGAGATAGTTGGTGCG 58.108 47.619 0.00 0.00 0.00 5.34
2572 2722 4.272018 GTGATGTCATGAGATAGTTGGTGC 59.728 45.833 5.15 0.00 0.00 5.01
2573 2723 5.422145 TGTGATGTCATGAGATAGTTGGTG 58.578 41.667 5.15 0.00 0.00 4.17
2574 2724 5.682234 TGTGATGTCATGAGATAGTTGGT 57.318 39.130 5.15 0.00 0.00 3.67
2575 2725 5.469084 CCATGTGATGTCATGAGATAGTTGG 59.531 44.000 5.15 7.16 45.41 3.77
2576 2726 6.541111 CCATGTGATGTCATGAGATAGTTG 57.459 41.667 5.15 2.14 45.41 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.