AutoCloner

Multiple sequence alignment - TraesCS7D01G553900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G553900	chr7D	100.000	4358	0	0	1	4358	638259017	638263374	0.000000e+00	8048.0
1	TraesCS7D01G553900	chr7A	96.221	3308	78	19	519	3802	727851125	727847841	0.000000e+00	5373.0
2	TraesCS7D01G553900	chr7A	97.360	644	17	0	1422	2065	727838868	727838225	0.000000e+00	1096.0
3	TraesCS7D01G553900	chr7A	95.265	528	13	6	2	522	727851804	727851282	0.000000e+00	826.0
4	TraesCS7D01G553900	chr7A	90.090	111	7	2	3798	3908	727847794	727847688	1.630000e-29	141.0
5	TraesCS7D01G553900	chr7B	94.753	2954	100	29	446	3381	734683590	734686506	0.000000e+00	4545.0
6	TraesCS7D01G553900	chr7B	92.265	362	16	4	3464	3824	734686503	734686853	1.810000e-138	503.0
7	TraesCS7D01G553900	chr7B	93.525	139	8	1	188	326	734683388	734683525	5.710000e-49	206.0
8	TraesCS7D01G553900	chr6B	78.955	727	143	10	1001	1722	717537685	717538406	1.820000e-133	486.0
9	TraesCS7D01G553900	chr6D	78.880	625	126	5	2726	3347	472526658	472527279	6.740000e-113	418.0
10	TraesCS7D01G553900	chr5A	81.818	121	17	3	4239	4358	44902841	44902725	3.590000e-16	97.1
11	TraesCS7D01G553900	chr1B	80.800	125	16	5	4237	4358	643048647	643048766	1.670000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G553900	chr7D	638259017	638263374	4357	False	8048.000000	8048	100.000000	1	4358	1	chr7D.!!$F1	4357
1	TraesCS7D01G553900	chr7A	727847688	727851804	4116	True	2113.333333	5373	93.858667	2	3908	3	chr7A.!!$R2	3906
2	TraesCS7D01G553900	chr7A	727838225	727838868	643	True	1096.000000	1096	97.360000	1422	2065	1	chr7A.!!$R1	643
3	TraesCS7D01G553900	chr7B	734683388	734686853	3465	False	1751.333333	4545	93.514333	188	3824	3	chr7B.!!$F1	3636
4	TraesCS7D01G553900	chr6B	717537685	717538406	721	False	486.000000	486	78.955000	1001	1722	1	chr6B.!!$F1	721
5	TraesCS7D01G553900	chr6D	472526658	472527279	621	False	418.000000	418	78.880000	2726	3347	1	chr6D.!!$F1	621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
172	173	0.309302	CAGAGACGATAGGTGAGCCG	59.691	60.000	0.00	0.00	40.50	5.52	F
941	1138	0.715987	AGGCCCTCCTCTCTCTCTTT	59.284	55.000	0.00	0.00	38.72	2.52	F
970	1167	1.113788	CTCTTCTCCCTCCTCTGCTG	58.886	60.000	0.00	0.00	0.00	4.41	F
2689	2890	2.028567	TGTCTGACATGGACGTGCATAA	60.029	45.455	22.75	10.27	36.58	1.90	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1104	1302	0.179062	GCTGCGTCTCCAGATGGAAT	60.179	55.000	2.65	44.91	3.01	R
2871	3076	1.069765	CATGGCGAGCCCGATACTT	59.930	57.895	12.05	38.22	2.24	R
3171	3376	1.144057	CATGACGGGGAGGCTGTAC	59.856	63.158	0.00	0.00	2.90	R
4187	4459	0.034059	CTACATAAGCGCCCAGGAGG	59.966	60.000	2.29	39.47	4.30	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	0.945099	CCGTCGCAGCTACTCTCATA	59.055	55.000	0.00	0.00	0.00	2.15
41	42	4.928615	GCAGCTACTCTCATATTGTGATCC	59.071	45.833	0.00	0.00	35.97	3.36
48	49	3.384467	TCTCATATTGTGATCCAGCGTCA	59.616	43.478	0.00	0.00	35.97	4.35
97	98	6.723977	TGCATCTCCTTTAATAAAAGTTGGGT	59.276	34.615	0.00	0.00	40.51	4.51
166	167	1.395826	GGCAGCCAGAGACGATAGGT	61.396	60.000	6.55	0.00	43.77	3.08
172	173	0.309302	CAGAGACGATAGGTGAGCCG	59.691	60.000	0.00	0.00	40.50	5.52
342	343	9.646522	AGGCATATATTGGTCTAAAAACATCTT	57.353	29.630	0.00	0.00	0.00	2.40
400	404	6.609616	AGATGAAAACTTTTTGGTAAGGTGGA	59.390	34.615	0.00	0.00	0.00	4.02
436	440	9.579932	AAAACTGGGGATAATAAGATCTCAATC	57.420	33.333	0.00	0.00	0.00	2.67
438	442	6.794493	ACTGGGGATAATAAGATCTCAATCCA	59.206	38.462	19.32	9.73	35.60	3.41
467	475	8.674263	AAAGATAATAAGATCACAGCAAGAGG	57.326	34.615	0.00	0.00	0.00	3.69
468	476	7.609097	AGATAATAAGATCACAGCAAGAGGA	57.391	36.000	0.00	0.00	0.00	3.71
650	844	1.348250	CGCATGTGACCGTGTATGC	59.652	57.895	0.00	0.00	41.76	3.14
675	869	1.607612	GTGGGATTCACGGTGGGAT	59.392	57.895	8.50	3.04	36.56	3.85
686	880	1.134098	ACGGTGGGATTCCATGTGATC	60.134	52.381	0.00	0.00	46.09	2.92
875	1069	1.430228	GTCGTCTTCCTCCTCGCTC	59.570	63.158	0.00	0.00	0.00	5.03
912	1107	6.270463	CCATATGATCCATTTTCCCATCCAAA	59.730	38.462	3.65	0.00	0.00	3.28
941	1138	0.715987	AGGCCCTCCTCTCTCTCTTT	59.284	55.000	0.00	0.00	38.72	2.52
942	1139	1.119684	GGCCCTCCTCTCTCTCTTTC	58.880	60.000	0.00	0.00	0.00	2.62
943	1140	1.342975	GGCCCTCCTCTCTCTCTTTCT	60.343	57.143	0.00	0.00	0.00	2.52
944	1141	2.031870	GCCCTCCTCTCTCTCTTTCTC	58.968	57.143	0.00	0.00	0.00	2.87
970	1167	1.113788	CTCTTCTCCCTCCTCTGCTG	58.886	60.000	0.00	0.00	0.00	4.41
1110	1308	5.715439	TGTACATCAAGAGGGAATTCCAT	57.285	39.130	25.67	19.82	38.24	3.41
2241	2439	2.093764	GTCTATGCAGAGGTTCAGCAGT	60.094	50.000	8.78	0.00	42.10	4.40
2511	2709	4.463879	CAGAGCCCCACAGAGCCG	62.464	72.222	0.00	0.00	0.00	5.52
2655	2853	2.671396	CCAGCAGGTACGTGTTCAATAC	59.329	50.000	16.36	0.00	0.00	1.89
2689	2890	2.028567	TGTCTGACATGGACGTGCATAA	60.029	45.455	22.75	10.27	36.58	1.90
2871	3076	2.110352	CACGCTGCTCATGATGCCA	61.110	57.895	12.62	3.49	0.00	4.92
3201	3406	1.679944	CCCGTCATGCTCAACTCCATT	60.680	52.381	0.00	0.00	0.00	3.16
3261	3466	2.720758	CCTCGCGCTTGTCTTCGTG	61.721	63.158	5.56	0.00	37.53	4.35
3294	3499	3.650950	GAGACCAAGGGCCTGCCA	61.651	66.667	6.92	0.00	37.98	4.92
3503	3724	2.159787	GCTATTCATGCGGCGATGTTAG	60.160	50.000	12.98	15.88	0.00	2.34
3504	3725	1.229428	ATTCATGCGGCGATGTTAGG	58.771	50.000	12.98	0.00	0.00	2.69
3505	3726	1.436195	TTCATGCGGCGATGTTAGGC	61.436	55.000	12.98	0.00	0.00	3.93
3508	3729	0.105964	ATGCGGCGATGTTAGGCTAA	59.894	50.000	12.98	2.04	0.00	3.09
3509	3730	0.108089	TGCGGCGATGTTAGGCTAAA	60.108	50.000	12.98	0.21	0.00	1.85
3510	3731	0.582005	GCGGCGATGTTAGGCTAAAG	59.418	55.000	12.98	2.56	0.00	1.85
3511	3732	0.582005	CGGCGATGTTAGGCTAAAGC	59.418	55.000	8.86	11.74	41.14	3.51
3513	3734	1.599542	GGCGATGTTAGGCTAAAGCAG	59.400	52.381	8.86	2.91	44.36	4.24
3517	3738	3.678806	CGATGTTAGGCTAAAGCAGACCA	60.679	47.826	8.86	1.20	44.36	4.02
3756	3977	5.217393	CCAAGTGATGCATGCATGTATTAC	58.783	41.667	36.73	31.82	38.84	1.89
3767	3988	6.790350	GCATGCATGTATTACGTGTTGTATAC	59.210	38.462	26.79	0.00	37.43	1.47
3787	4008	8.653338	TGTATACTACTTTGATTTTGAACGAGC	58.347	33.333	4.17	0.00	0.00	5.03
3819	4091	1.934589	TCACTCACAAGTCACAACCG	58.065	50.000	0.00	0.00	31.71	4.44
3824	4096	2.993899	CTCACAAGTCACAACCGGTATC	59.006	50.000	8.00	0.00	0.00	2.24
3827	4099	2.289444	ACAAGTCACAACCGGTATCCAG	60.289	50.000	8.00	0.00	0.00	3.86
3831	4103	2.494870	GTCACAACCGGTATCCAGTACT	59.505	50.000	8.00	0.00	33.64	2.73
3860	4132	8.500753	TTGCTTCGGTCAAAATATAGTATGTT	57.499	30.769	0.00	0.00	0.00	2.71
3861	4133	7.915508	TGCTTCGGTCAAAATATAGTATGTTG	58.084	34.615	0.00	0.00	0.00	3.33
3903	4175	8.585471	AAATGAATTGTATCATCACCAGTTCT	57.415	30.769	0.00	0.00	39.08	3.01
3908	4180	4.352893	TGTATCATCACCAGTTCTCTCCA	58.647	43.478	0.00	0.00	0.00	3.86
3909	4181	4.964897	TGTATCATCACCAGTTCTCTCCAT	59.035	41.667	0.00	0.00	0.00	3.41
3910	4182	6.136155	TGTATCATCACCAGTTCTCTCCATA	58.864	40.000	0.00	0.00	0.00	2.74
3911	4183	5.543507	ATCATCACCAGTTCTCTCCATAC	57.456	43.478	0.00	0.00	0.00	2.39
3912	4184	3.706594	TCATCACCAGTTCTCTCCATACC	59.293	47.826	0.00	0.00	0.00	2.73
3913	4185	3.474798	TCACCAGTTCTCTCCATACCT	57.525	47.619	0.00	0.00	0.00	3.08
3914	4186	4.603094	TCACCAGTTCTCTCCATACCTA	57.397	45.455	0.00	0.00	0.00	3.08
3915	4187	5.144159	TCACCAGTTCTCTCCATACCTAT	57.856	43.478	0.00	0.00	0.00	2.57
3916	4188	4.895889	TCACCAGTTCTCTCCATACCTATG	59.104	45.833	0.00	0.00	0.00	2.23
3917	4189	4.651503	CACCAGTTCTCTCCATACCTATGT	59.348	45.833	0.00	0.00	31.82	2.29
3918	4190	5.129485	CACCAGTTCTCTCCATACCTATGTT	59.871	44.000	0.00	0.00	31.82	2.71
3919	4191	5.129485	ACCAGTTCTCTCCATACCTATGTTG	59.871	44.000	0.00	0.00	31.82	3.33
3920	4192	5.363868	CCAGTTCTCTCCATACCTATGTTGA	59.636	44.000	0.00	0.00	31.82	3.18
3921	4193	6.042552	CCAGTTCTCTCCATACCTATGTTGAT	59.957	42.308	0.00	0.00	31.82	2.57
3922	4194	7.151308	CAGTTCTCTCCATACCTATGTTGATC	58.849	42.308	0.00	0.00	31.82	2.92
3923	4195	6.841229	AGTTCTCTCCATACCTATGTTGATCA	59.159	38.462	0.00	0.00	31.82	2.92
3924	4196	7.512058	AGTTCTCTCCATACCTATGTTGATCAT	59.488	37.037	0.00	0.00	40.25	2.45
3925	4197	7.473735	TCTCTCCATACCTATGTTGATCATC	57.526	40.000	0.00	0.00	37.91	2.92
3926	4198	7.244558	TCTCTCCATACCTATGTTGATCATCT	58.755	38.462	0.00	0.00	37.91	2.90
3927	4199	7.178097	TCTCTCCATACCTATGTTGATCATCTG	59.822	40.741	0.00	0.00	37.91	2.90
3928	4200	7.012607	TCTCCATACCTATGTTGATCATCTGA	58.987	38.462	0.00	0.00	37.91	3.27
3929	4201	7.178097	TCTCCATACCTATGTTGATCATCTGAG	59.822	40.741	0.00	0.00	37.91	3.35
3930	4202	6.784473	TCCATACCTATGTTGATCATCTGAGT	59.216	38.462	0.00	0.00	37.91	3.41
3931	4203	7.290948	TCCATACCTATGTTGATCATCTGAGTT	59.709	37.037	0.00	0.00	37.91	3.01
3932	4204	7.601886	CCATACCTATGTTGATCATCTGAGTTC	59.398	40.741	0.00	0.00	37.91	3.01
3933	4205	6.550938	ACCTATGTTGATCATCTGAGTTCA	57.449	37.500	0.00	0.00	37.91	3.18
3934	4206	6.950842	ACCTATGTTGATCATCTGAGTTCAA	58.049	36.000	0.00	0.00	37.91	2.69
3935	4207	7.397221	ACCTATGTTGATCATCTGAGTTCAAA	58.603	34.615	0.00	0.00	37.91	2.69
3936	4208	7.884877	ACCTATGTTGATCATCTGAGTTCAAAA	59.115	33.333	0.00	0.00	37.91	2.44
3937	4209	8.900781	CCTATGTTGATCATCTGAGTTCAAAAT	58.099	33.333	0.00	5.14	37.91	1.82
3975	4247	9.836076	GTAAACCACAGACAACTAAAATAATCC	57.164	33.333	0.00	0.00	0.00	3.01
3976	4248	8.706322	AAACCACAGACAACTAAAATAATCCT	57.294	30.769	0.00	0.00	0.00	3.24
3977	4249	7.923414	ACCACAGACAACTAAAATAATCCTC	57.077	36.000	0.00	0.00	0.00	3.71
3978	4250	7.458397	ACCACAGACAACTAAAATAATCCTCA	58.542	34.615	0.00	0.00	0.00	3.86
3979	4251	7.942341	ACCACAGACAACTAAAATAATCCTCAA	59.058	33.333	0.00	0.00	0.00	3.02
3980	4252	8.792633	CCACAGACAACTAAAATAATCCTCAAA	58.207	33.333	0.00	0.00	0.00	2.69
3981	4253	9.831737	CACAGACAACTAAAATAATCCTCAAAG	57.168	33.333	0.00	0.00	0.00	2.77
3982	4254	9.014297	ACAGACAACTAAAATAATCCTCAAAGG	57.986	33.333	0.00	0.00	36.46	3.11
3983	4255	7.970614	CAGACAACTAAAATAATCCTCAAAGGC	59.029	37.037	0.00	0.00	34.61	4.35
3984	4256	7.890655	AGACAACTAAAATAATCCTCAAAGGCT	59.109	33.333	0.00	0.00	34.61	4.58
3985	4257	8.056407	ACAACTAAAATAATCCTCAAAGGCTC	57.944	34.615	0.00	0.00	34.61	4.70
3986	4258	7.669722	ACAACTAAAATAATCCTCAAAGGCTCA	59.330	33.333	0.00	0.00	34.61	4.26
3987	4259	8.522830	CAACTAAAATAATCCTCAAAGGCTCAA	58.477	33.333	0.00	0.00	34.61	3.02
3988	4260	8.650143	ACTAAAATAATCCTCAAAGGCTCAAA	57.350	30.769	0.00	0.00	34.61	2.69
3989	4261	9.259832	ACTAAAATAATCCTCAAAGGCTCAAAT	57.740	29.630	0.00	0.00	34.61	2.32
3990	4262	9.525409	CTAAAATAATCCTCAAAGGCTCAAATG	57.475	33.333	0.00	0.00	34.61	2.32
3991	4263	6.475596	AATAATCCTCAAAGGCTCAAATGG	57.524	37.500	0.00	0.00	34.61	3.16
3992	4264	3.744940	ATCCTCAAAGGCTCAAATGGA	57.255	42.857	0.00	0.00	34.61	3.41
3993	4265	3.524095	TCCTCAAAGGCTCAAATGGAA	57.476	42.857	0.00	0.00	34.61	3.53
3994	4266	3.424703	TCCTCAAAGGCTCAAATGGAAG	58.575	45.455	0.00	0.00	34.61	3.46
3995	4267	3.074390	TCCTCAAAGGCTCAAATGGAAGA	59.926	43.478	0.00	0.00	34.61	2.87
3996	4268	3.828451	CCTCAAAGGCTCAAATGGAAGAA	59.172	43.478	0.00	0.00	0.00	2.52
3997	4269	4.281688	CCTCAAAGGCTCAAATGGAAGAAA	59.718	41.667	0.00	0.00	0.00	2.52
3998	4270	5.046807	CCTCAAAGGCTCAAATGGAAGAAAT	60.047	40.000	0.00	0.00	0.00	2.17
3999	4271	5.786311	TCAAAGGCTCAAATGGAAGAAATG	58.214	37.500	0.00	0.00	0.00	2.32
4000	4272	4.813750	AAGGCTCAAATGGAAGAAATGG	57.186	40.909	0.00	0.00	0.00	3.16
4001	4273	2.498885	AGGCTCAAATGGAAGAAATGGC	59.501	45.455	0.00	0.00	0.00	4.40
4002	4274	2.533266	GCTCAAATGGAAGAAATGGCG	58.467	47.619	0.00	0.00	0.00	5.69
4003	4275	2.164219	GCTCAAATGGAAGAAATGGCGA	59.836	45.455	0.00	0.00	0.00	5.54
4004	4276	3.733077	GCTCAAATGGAAGAAATGGCGAG	60.733	47.826	0.00	0.00	0.00	5.03
4005	4277	3.684908	TCAAATGGAAGAAATGGCGAGA	58.315	40.909	0.00	0.00	0.00	4.04
4006	4278	4.078537	TCAAATGGAAGAAATGGCGAGAA	58.921	39.130	0.00	0.00	0.00	2.87
4007	4279	4.156556	TCAAATGGAAGAAATGGCGAGAAG	59.843	41.667	0.00	0.00	0.00	2.85
4008	4280	3.634397	ATGGAAGAAATGGCGAGAAGA	57.366	42.857	0.00	0.00	0.00	2.87
4009	4281	2.977914	TGGAAGAAATGGCGAGAAGAG	58.022	47.619	0.00	0.00	0.00	2.85
4010	4282	2.567169	TGGAAGAAATGGCGAGAAGAGA	59.433	45.455	0.00	0.00	0.00	3.10
4011	4283	3.007940	TGGAAGAAATGGCGAGAAGAGAA	59.992	43.478	0.00	0.00	0.00	2.87
4012	4284	3.372514	GGAAGAAATGGCGAGAAGAGAAC	59.627	47.826	0.00	0.00	0.00	3.01
4013	4285	2.979240	AGAAATGGCGAGAAGAGAACC	58.021	47.619	0.00	0.00	0.00	3.62
4014	4286	2.303022	AGAAATGGCGAGAAGAGAACCA	59.697	45.455	0.00	0.00	34.28	3.67
4015	4287	2.100605	AATGGCGAGAAGAGAACCAC	57.899	50.000	0.00	0.00	32.13	4.16
4016	4288	0.976641	ATGGCGAGAAGAGAACCACA	59.023	50.000	0.00	0.00	32.13	4.17
4017	4289	0.976641	TGGCGAGAAGAGAACCACAT	59.023	50.000	0.00	0.00	0.00	3.21
4018	4290	2.176045	TGGCGAGAAGAGAACCACATA	58.824	47.619	0.00	0.00	0.00	2.29
4019	4291	2.565391	TGGCGAGAAGAGAACCACATAA	59.435	45.455	0.00	0.00	0.00	1.90
4020	4292	2.930682	GGCGAGAAGAGAACCACATAAC	59.069	50.000	0.00	0.00	0.00	1.89
4021	4293	2.930682	GCGAGAAGAGAACCACATAACC	59.069	50.000	0.00	0.00	0.00	2.85
4022	4294	3.616560	GCGAGAAGAGAACCACATAACCA	60.617	47.826	0.00	0.00	0.00	3.67
4023	4295	3.927142	CGAGAAGAGAACCACATAACCAC	59.073	47.826	0.00	0.00	0.00	4.16
4024	4296	4.560716	CGAGAAGAGAACCACATAACCACA	60.561	45.833	0.00	0.00	0.00	4.17
4025	4297	4.899502	AGAAGAGAACCACATAACCACAG	58.100	43.478	0.00	0.00	0.00	3.66
4026	4298	4.593206	AGAAGAGAACCACATAACCACAGA	59.407	41.667	0.00	0.00	0.00	3.41
4027	4299	4.543590	AGAGAACCACATAACCACAGAG	57.456	45.455	0.00	0.00	0.00	3.35
4028	4300	3.904339	AGAGAACCACATAACCACAGAGT	59.096	43.478	0.00	0.00	0.00	3.24
4029	4301	5.084519	AGAGAACCACATAACCACAGAGTA	58.915	41.667	0.00	0.00	0.00	2.59
4030	4302	5.186021	AGAGAACCACATAACCACAGAGTAG	59.814	44.000	0.00	0.00	0.00	2.57
4031	4303	4.838986	AGAACCACATAACCACAGAGTAGT	59.161	41.667	0.00	0.00	0.00	2.73
4032	4304	5.307196	AGAACCACATAACCACAGAGTAGTT	59.693	40.000	0.00	0.00	0.00	2.24
4033	4305	4.894784	ACCACATAACCACAGAGTAGTTG	58.105	43.478	0.00	0.00	0.00	3.16
4034	4306	3.684788	CCACATAACCACAGAGTAGTTGC	59.315	47.826	0.00	0.00	0.00	4.17
4035	4307	3.684788	CACATAACCACAGAGTAGTTGCC	59.315	47.826	0.00	0.00	0.00	4.52
4036	4308	3.270877	CATAACCACAGAGTAGTTGCCC	58.729	50.000	0.00	0.00	0.00	5.36
4037	4309	1.136828	AACCACAGAGTAGTTGCCCA	58.863	50.000	0.00	0.00	0.00	5.36
4038	4310	0.396811	ACCACAGAGTAGTTGCCCAC	59.603	55.000	0.00	0.00	0.00	4.61
4039	4311	0.396435	CCACAGAGTAGTTGCCCACA	59.604	55.000	0.00	0.00	0.00	4.17
4040	4312	1.202758	CCACAGAGTAGTTGCCCACAA	60.203	52.381	0.00	0.00	0.00	3.33
4041	4313	2.146342	CACAGAGTAGTTGCCCACAAG	58.854	52.381	0.00	0.00	36.16	3.16
4042	4314	2.047061	ACAGAGTAGTTGCCCACAAGA	58.953	47.619	0.00	0.00	36.16	3.02
4043	4315	2.037772	ACAGAGTAGTTGCCCACAAGAG	59.962	50.000	0.00	0.00	36.16	2.85
4044	4316	1.002544	AGAGTAGTTGCCCACAAGAGC	59.997	52.381	0.00	0.00	36.16	4.09
4045	4317	0.036875	AGTAGTTGCCCACAAGAGCC	59.963	55.000	0.00	0.00	36.16	4.70
4046	4318	0.036875	GTAGTTGCCCACAAGAGCCT	59.963	55.000	0.00	0.00	36.16	4.58
4047	4319	0.324943	TAGTTGCCCACAAGAGCCTC	59.675	55.000	0.00	0.00	36.16	4.70
4048	4320	1.073897	GTTGCCCACAAGAGCCTCT	59.926	57.895	0.00	0.00	36.16	3.69
4049	4321	0.957888	GTTGCCCACAAGAGCCTCTC	60.958	60.000	0.00	0.00	36.16	3.20
4050	4322	1.130054	TTGCCCACAAGAGCCTCTCT	61.130	55.000	0.00	0.00	43.37	3.10
4059	4331	1.757682	AGAGCCTCTCTTACCTCACG	58.242	55.000	0.00	0.00	37.60	4.35
4060	4332	0.741915	GAGCCTCTCTTACCTCACGG	59.258	60.000	0.00	0.00	0.00	4.94
4061	4333	4.285743	AGAGCCTCTCTTACCTCACGGT	62.286	54.545	0.00	0.00	37.60	4.83
4062	4334	0.173708	GCCTCTCTTACCTCACGGTG	59.826	60.000	0.56	0.56	45.18	4.94
4063	4335	0.818296	CCTCTCTTACCTCACGGTGG	59.182	60.000	8.50	0.00	45.18	4.61
4064	4336	1.616187	CCTCTCTTACCTCACGGTGGA	60.616	57.143	8.50	0.00	45.18	4.02
4065	4337	1.746220	CTCTCTTACCTCACGGTGGAG	59.254	57.143	8.50	5.95	45.18	3.86
4071	4343	3.211288	CTCACGGTGGAGGCTAGG	58.789	66.667	8.50	0.00	0.00	3.02
4072	4344	2.363795	TCACGGTGGAGGCTAGGG	60.364	66.667	8.50	0.00	0.00	3.53
4073	4345	4.162690	CACGGTGGAGGCTAGGGC	62.163	72.222	0.00	0.00	37.82	5.19
4074	4346	4.400251	ACGGTGGAGGCTAGGGCT	62.400	66.667	0.00	0.00	42.48	5.19
4075	4347	3.083997	CGGTGGAGGCTAGGGCTT	61.084	66.667	0.00	0.00	38.98	4.35
4076	4348	2.670148	CGGTGGAGGCTAGGGCTTT	61.670	63.158	0.00	0.00	38.98	3.51
4077	4349	1.335132	CGGTGGAGGCTAGGGCTTTA	61.335	60.000	0.00	0.00	38.98	1.85
4078	4350	0.180642	GGTGGAGGCTAGGGCTTTAC	59.819	60.000	0.00	0.00	38.98	2.01
4079	4351	0.909623	GTGGAGGCTAGGGCTTTACA	59.090	55.000	0.00	0.00	38.98	2.41
4080	4352	1.134371	GTGGAGGCTAGGGCTTTACAG	60.134	57.143	0.00	0.00	38.98	2.74
4081	4353	1.273609	TGGAGGCTAGGGCTTTACAGA	60.274	52.381	0.00	0.00	38.98	3.41
4082	4354	1.414550	GGAGGCTAGGGCTTTACAGAG	59.585	57.143	0.00	0.00	38.98	3.35
4083	4355	2.389715	GAGGCTAGGGCTTTACAGAGA	58.610	52.381	0.00	0.00	38.98	3.10
4084	4356	2.364002	GAGGCTAGGGCTTTACAGAGAG	59.636	54.545	0.00	0.00	38.98	3.20
4085	4357	2.023888	AGGCTAGGGCTTTACAGAGAGA	60.024	50.000	0.00	0.00	33.67	3.10
4086	4358	2.364002	GGCTAGGGCTTTACAGAGAGAG	59.636	54.545	0.00	0.00	38.73	3.20
4087	4359	3.292460	GCTAGGGCTTTACAGAGAGAGA	58.708	50.000	0.00	0.00	35.22	3.10
4088	4360	3.895041	GCTAGGGCTTTACAGAGAGAGAT	59.105	47.826	0.00	0.00	35.22	2.75
4089	4361	4.261994	GCTAGGGCTTTACAGAGAGAGATG	60.262	50.000	0.00	0.00	35.22	2.90
4090	4362	3.718723	AGGGCTTTACAGAGAGAGATGT	58.281	45.455	0.00	0.00	0.00	3.06
4091	4363	3.450457	AGGGCTTTACAGAGAGAGATGTG	59.550	47.826	0.00	0.00	0.00	3.21
4092	4364	3.449018	GGGCTTTACAGAGAGAGATGTGA	59.551	47.826	0.00	0.00	0.00	3.58
4093	4365	4.100808	GGGCTTTACAGAGAGAGATGTGAT	59.899	45.833	0.00	0.00	0.00	3.06
4094	4366	5.288804	GGCTTTACAGAGAGAGATGTGATC	58.711	45.833	0.00	0.00	0.00	2.92
4095	4367	5.068987	GGCTTTACAGAGAGAGATGTGATCT	59.931	44.000	0.00	0.00	43.70	2.75
4096	4368	6.264292	GGCTTTACAGAGAGAGATGTGATCTA	59.736	42.308	0.00	0.00	40.38	1.98
4097	4369	7.362662	GCTTTACAGAGAGAGATGTGATCTAG	58.637	42.308	0.00	0.00	40.38	2.43
4098	4370	7.522073	GCTTTACAGAGAGAGATGTGATCTAGG	60.522	44.444	0.00	0.00	40.38	3.02
4099	4371	5.387113	ACAGAGAGAGATGTGATCTAGGT	57.613	43.478	0.00	0.00	40.38	3.08
4100	4372	5.765510	ACAGAGAGAGATGTGATCTAGGTT	58.234	41.667	0.00	0.00	40.38	3.50
4101	4373	5.593909	ACAGAGAGAGATGTGATCTAGGTTG	59.406	44.000	0.00	0.00	40.38	3.77
4102	4374	4.584325	AGAGAGAGATGTGATCTAGGTTGC	59.416	45.833	0.00	0.00	40.38	4.17
4103	4375	4.545678	AGAGAGATGTGATCTAGGTTGCT	58.454	43.478	0.00	0.00	40.38	3.91
4104	4376	4.341806	AGAGAGATGTGATCTAGGTTGCTG	59.658	45.833	0.00	0.00	40.38	4.41
4105	4377	3.129871	GAGATGTGATCTAGGTTGCTGC	58.870	50.000	0.00	0.00	40.38	5.25
4106	4378	2.158842	AGATGTGATCTAGGTTGCTGCC	60.159	50.000	0.00	0.00	38.00	4.85
4107	4379	0.983467	TGTGATCTAGGTTGCTGCCA	59.017	50.000	0.00	0.00	0.00	4.92
4108	4380	1.339055	TGTGATCTAGGTTGCTGCCAC	60.339	52.381	0.00	0.00	0.00	5.01
4109	4381	1.065854	GTGATCTAGGTTGCTGCCACT	60.066	52.381	3.76	0.00	0.00	4.00
4110	4382	2.168521	GTGATCTAGGTTGCTGCCACTA	59.831	50.000	3.76	0.05	0.00	2.74
4111	4383	3.041211	TGATCTAGGTTGCTGCCACTAT	58.959	45.455	3.76	0.00	0.00	2.12
4112	4384	3.070159	TGATCTAGGTTGCTGCCACTATC	59.930	47.826	3.76	3.78	0.00	2.08
4113	4385	2.466846	TCTAGGTTGCTGCCACTATCA	58.533	47.619	3.76	0.00	0.00	2.15
4114	4386	2.837591	TCTAGGTTGCTGCCACTATCAA	59.162	45.455	3.76	0.00	0.00	2.57
4115	4387	1.826385	AGGTTGCTGCCACTATCAAC	58.174	50.000	3.76	0.00	38.36	3.18
4116	4388	1.352352	AGGTTGCTGCCACTATCAACT	59.648	47.619	3.76	0.00	38.90	3.16
4117	4389	2.162681	GGTTGCTGCCACTATCAACTT	58.837	47.619	3.76	0.00	38.90	2.66
4118	4390	3.009033	AGGTTGCTGCCACTATCAACTTA	59.991	43.478	3.76	0.00	38.90	2.24
4119	4391	3.947834	GGTTGCTGCCACTATCAACTTAT	59.052	43.478	3.76	0.00	38.90	1.73
4120	4392	4.201950	GGTTGCTGCCACTATCAACTTATG	60.202	45.833	3.76	0.00	38.90	1.90
4121	4393	3.544684	TGCTGCCACTATCAACTTATGG	58.455	45.455	0.00	0.00	0.00	2.74
4122	4394	3.199727	TGCTGCCACTATCAACTTATGGA	59.800	43.478	0.00	0.00	31.69	3.41
4123	4395	3.561725	GCTGCCACTATCAACTTATGGAC	59.438	47.826	0.00	0.00	31.69	4.02
4124	4396	4.130118	CTGCCACTATCAACTTATGGACC	58.870	47.826	0.00	0.00	31.69	4.46
4125	4397	3.521531	TGCCACTATCAACTTATGGACCA	59.478	43.478	0.00	0.00	31.69	4.02
4126	4398	4.018870	TGCCACTATCAACTTATGGACCAA	60.019	41.667	0.00	0.00	31.69	3.67
4127	4399	4.576463	GCCACTATCAACTTATGGACCAAG	59.424	45.833	0.00	0.00	31.69	3.61
4128	4400	5.629133	GCCACTATCAACTTATGGACCAAGA	60.629	44.000	0.00	0.00	31.69	3.02
4129	4401	6.595682	CCACTATCAACTTATGGACCAAGAT	58.404	40.000	0.00	0.00	31.69	2.40
4130	4402	6.484643	CCACTATCAACTTATGGACCAAGATG	59.515	42.308	0.00	0.00	31.69	2.90
4131	4403	7.275183	CACTATCAACTTATGGACCAAGATGA	58.725	38.462	8.19	8.19	38.61	2.92
4132	4404	7.935755	CACTATCAACTTATGGACCAAGATGAT	59.064	37.037	18.00	18.00	43.64	2.45
4133	4405	8.153550	ACTATCAACTTATGGACCAAGATGATC	58.846	37.037	17.63	0.00	41.69	2.92
4134	4406	5.684704	TCAACTTATGGACCAAGATGATCC	58.315	41.667	0.00	0.00	32.02	3.36
4135	4407	5.191522	TCAACTTATGGACCAAGATGATCCA	59.808	40.000	0.00	0.00	45.92	3.41
4136	4408	5.715439	ACTTATGGACCAAGATGATCCAA	57.285	39.130	0.00	0.00	44.79	3.53
4137	4409	5.688807	ACTTATGGACCAAGATGATCCAAG	58.311	41.667	0.00	0.00	44.79	3.61
4138	4410	3.589951	ATGGACCAAGATGATCCAAGG	57.410	47.619	0.00	0.00	44.79	3.61
4139	4411	2.561187	TGGACCAAGATGATCCAAGGA	58.439	47.619	0.00	0.00	37.04	3.36
4140	4412	3.125656	TGGACCAAGATGATCCAAGGAT	58.874	45.455	0.16	0.16	37.04	3.24
4141	4413	3.117776	TGGACCAAGATGATCCAAGGATG	60.118	47.826	6.28	0.00	37.04	3.51
4142	4414	2.883386	GACCAAGATGATCCAAGGATGC	59.117	50.000	6.28	0.00	34.60	3.91
4143	4415	2.512896	ACCAAGATGATCCAAGGATGCT	59.487	45.455	6.28	0.00	34.60	3.79
4144	4416	3.053095	ACCAAGATGATCCAAGGATGCTT	60.053	43.478	6.28	0.00	34.60	3.91
4145	4417	3.318275	CCAAGATGATCCAAGGATGCTTG	59.682	47.826	19.26	19.26	36.16	4.01
4146	4418	3.947612	AGATGATCCAAGGATGCTTGT	57.052	42.857	23.38	7.93	34.60	3.16
4147	4419	3.552875	AGATGATCCAAGGATGCTTGTG	58.447	45.455	23.38	15.47	34.60	3.33
4148	4420	2.885135	TGATCCAAGGATGCTTGTGT	57.115	45.000	23.38	12.65	34.60	3.72
4149	4421	2.439409	TGATCCAAGGATGCTTGTGTG	58.561	47.619	23.38	10.24	34.60	3.82
4150	4422	2.224843	TGATCCAAGGATGCTTGTGTGT	60.225	45.455	23.38	8.02	34.60	3.72
4151	4423	1.896220	TCCAAGGATGCTTGTGTGTC	58.104	50.000	23.38	0.00	32.80	3.67
4152	4424	0.518636	CCAAGGATGCTTGTGTGTCG	59.481	55.000	23.38	5.37	32.80	4.35
4153	4425	0.110056	CAAGGATGCTTGTGTGTCGC	60.110	55.000	18.09	0.00	0.00	5.19
4154	4426	1.237285	AAGGATGCTTGTGTGTCGCC	61.237	55.000	0.00	0.00	0.00	5.54
4155	4427	2.690778	GGATGCTTGTGTGTCGCCC	61.691	63.158	0.00	0.00	0.00	6.13
4156	4428	2.672996	ATGCTTGTGTGTCGCCCC	60.673	61.111	0.00	0.00	0.00	5.80
4157	4429	3.490031	ATGCTTGTGTGTCGCCCCA	62.490	57.895	0.00	0.00	0.00	4.96
4158	4430	3.660111	GCTTGTGTGTCGCCCCAC	61.660	66.667	0.00	0.00	35.86	4.61
4159	4431	2.978010	CTTGTGTGTCGCCCCACC	60.978	66.667	0.00	0.00	34.35	4.61
4160	4432	4.572571	TTGTGTGTCGCCCCACCC	62.573	66.667	0.00	0.00	34.35	4.61
4162	4434	4.699522	GTGTGTCGCCCCACCCTC	62.700	72.222	0.00	0.00	34.35	4.30
4163	4435	4.954118	TGTGTCGCCCCACCCTCT	62.954	66.667	0.00	0.00	34.35	3.69
4164	4436	4.083862	GTGTCGCCCCACCCTCTC	62.084	72.222	0.00	0.00	0.00	3.20
4165	4437	4.631740	TGTCGCCCCACCCTCTCA	62.632	66.667	0.00	0.00	0.00	3.27
4166	4438	3.083997	GTCGCCCCACCCTCTCAT	61.084	66.667	0.00	0.00	0.00	2.90
4167	4439	3.083349	TCGCCCCACCCTCTCATG	61.083	66.667	0.00	0.00	0.00	3.07
4168	4440	4.864334	CGCCCCACCCTCTCATGC	62.864	72.222	0.00	0.00	0.00	4.06
4169	4441	4.512914	GCCCCACCCTCTCATGCC	62.513	72.222	0.00	0.00	0.00	4.40
4170	4442	2.693864	CCCCACCCTCTCATGCCT	60.694	66.667	0.00	0.00	0.00	4.75
4171	4443	2.311854	CCCCACCCTCTCATGCCTT	61.312	63.158	0.00	0.00	0.00	4.35
4172	4444	1.225704	CCCACCCTCTCATGCCTTC	59.774	63.158	0.00	0.00	0.00	3.46
4173	4445	1.565390	CCCACCCTCTCATGCCTTCA	61.565	60.000	0.00	0.00	0.00	3.02
4174	4446	0.549950	CCACCCTCTCATGCCTTCAT	59.450	55.000	0.00	0.00	0.00	2.57
4175	4447	1.476471	CCACCCTCTCATGCCTTCATC	60.476	57.143	0.00	0.00	0.00	2.92
4176	4448	1.489649	CACCCTCTCATGCCTTCATCT	59.510	52.381	0.00	0.00	0.00	2.90
4177	4449	2.092538	CACCCTCTCATGCCTTCATCTT	60.093	50.000	0.00	0.00	0.00	2.40
4178	4450	2.172293	ACCCTCTCATGCCTTCATCTTC	59.828	50.000	0.00	0.00	0.00	2.87
4179	4451	2.438763	CCCTCTCATGCCTTCATCTTCT	59.561	50.000	0.00	0.00	0.00	2.85
4180	4452	3.645212	CCCTCTCATGCCTTCATCTTCTA	59.355	47.826	0.00	0.00	0.00	2.10
4181	4453	4.262549	CCCTCTCATGCCTTCATCTTCTAG	60.263	50.000	0.00	0.00	0.00	2.43
4182	4454	4.262549	CCTCTCATGCCTTCATCTTCTAGG	60.263	50.000	0.00	0.00	0.00	3.02
4183	4455	4.293494	TCTCATGCCTTCATCTTCTAGGT	58.707	43.478	0.00	0.00	0.00	3.08
4184	4456	4.100653	TCTCATGCCTTCATCTTCTAGGTG	59.899	45.833	0.00	0.00	0.00	4.00
4185	4457	3.135348	TCATGCCTTCATCTTCTAGGTGG	59.865	47.826	0.00	0.00	0.00	4.61
4186	4458	1.839994	TGCCTTCATCTTCTAGGTGGG	59.160	52.381	0.00	0.00	0.00	4.61
4187	4459	1.475930	GCCTTCATCTTCTAGGTGGGC	60.476	57.143	0.00	0.00	0.00	5.36
4188	4460	1.141858	CCTTCATCTTCTAGGTGGGCC	59.858	57.143	0.00	0.00	0.00	5.80
4190	4462	1.794714	TCATCTTCTAGGTGGGCCTC	58.205	55.000	4.53	0.00	45.64	4.70
4191	4463	0.761802	CATCTTCTAGGTGGGCCTCC	59.238	60.000	16.96	16.96	45.64	4.30
4192	4464	0.644937	ATCTTCTAGGTGGGCCTCCT	59.355	55.000	28.68	28.68	45.64	3.69
4193	4465	0.325671	TCTTCTAGGTGGGCCTCCTG	60.326	60.000	32.31	22.41	45.64	3.86
4194	4466	1.306997	TTCTAGGTGGGCCTCCTGG	60.307	63.158	32.31	29.54	45.64	4.45
4195	4467	2.770048	CTAGGTGGGCCTCCTGGG	60.770	72.222	32.31	21.68	45.64	4.45
4204	4476	2.911143	CCTCCTGGGCGCTTATGT	59.089	61.111	7.64	0.00	0.00	2.29
4205	4477	2.133195	CCTCCTGGGCGCTTATGTA	58.867	57.895	7.64	0.00	0.00	2.29
4206	4478	0.034059	CCTCCTGGGCGCTTATGTAG	59.966	60.000	7.64	0.00	0.00	2.74
4207	4479	1.040646	CTCCTGGGCGCTTATGTAGA	58.959	55.000	7.64	0.00	0.00	2.59
4208	4480	1.412710	CTCCTGGGCGCTTATGTAGAA	59.587	52.381	7.64	0.00	0.00	2.10
4209	4481	1.834896	TCCTGGGCGCTTATGTAGAAA	59.165	47.619	7.64	0.00	0.00	2.52
4210	4482	2.237643	TCCTGGGCGCTTATGTAGAAAA	59.762	45.455	7.64	0.00	0.00	2.29
4211	4483	3.118038	TCCTGGGCGCTTATGTAGAAAAT	60.118	43.478	7.64	0.00	0.00	1.82
4212	4484	4.101898	TCCTGGGCGCTTATGTAGAAAATA	59.898	41.667	7.64	0.00	0.00	1.40
4213	4485	5.003804	CCTGGGCGCTTATGTAGAAAATAT	58.996	41.667	7.64	0.00	0.00	1.28
4214	4486	5.106555	CCTGGGCGCTTATGTAGAAAATATG	60.107	44.000	7.64	0.00	0.00	1.78
4215	4487	5.616270	TGGGCGCTTATGTAGAAAATATGA	58.384	37.500	7.64	0.00	0.00	2.15
4216	4488	6.058833	TGGGCGCTTATGTAGAAAATATGAA	58.941	36.000	7.64	0.00	0.00	2.57
4217	4489	6.714810	TGGGCGCTTATGTAGAAAATATGAAT	59.285	34.615	7.64	0.00	0.00	2.57
4218	4490	7.094805	TGGGCGCTTATGTAGAAAATATGAATC	60.095	37.037	7.64	0.00	0.00	2.52
4219	4491	7.244192	GGCGCTTATGTAGAAAATATGAATCC	58.756	38.462	7.64	0.00	0.00	3.01
4220	4492	7.244192	GCGCTTATGTAGAAAATATGAATCCC	58.756	38.462	0.00	0.00	0.00	3.85
4221	4493	7.119846	GCGCTTATGTAGAAAATATGAATCCCT	59.880	37.037	0.00	0.00	0.00	4.20
4222	4494	9.653287	CGCTTATGTAGAAAATATGAATCCCTA	57.347	33.333	0.00	0.00	0.00	3.53
4243	4515	9.303116	TCCCTAATATTTGTTGTTGTATTGTGT	57.697	29.630	0.00	0.00	0.00	3.72
4252	4524	9.676195	TTTGTTGTTGTATTGTGTATTGATCTG	57.324	29.630	0.00	0.00	0.00	2.90
4253	4525	8.614469	TGTTGTTGTATTGTGTATTGATCTGA	57.386	30.769	0.00	0.00	0.00	3.27
4254	4526	9.230122	TGTTGTTGTATTGTGTATTGATCTGAT	57.770	29.630	0.00	0.00	0.00	2.90
4255	4527	9.708222	GTTGTTGTATTGTGTATTGATCTGATC	57.292	33.333	10.72	10.72	0.00	2.92
4256	4528	9.447157	TTGTTGTATTGTGTATTGATCTGATCA	57.553	29.630	16.06	16.06	37.55	2.92
4257	4529	9.617523	TGTTGTATTGTGTATTGATCTGATCAT	57.382	29.630	20.16	12.79	39.39	2.45
4260	4532	9.617523	TGTATTGTGTATTGATCTGATCATTGT	57.382	29.630	20.16	12.13	39.39	2.71
4265	4537	9.933723	TGTGTATTGATCTGATCATTGTATAGG	57.066	33.333	20.16	0.00	39.39	2.57
4266	4538	9.376075	GTGTATTGATCTGATCATTGTATAGGG	57.624	37.037	20.16	0.00	39.39	3.53
4267	4539	9.325248	TGTATTGATCTGATCATTGTATAGGGA	57.675	33.333	20.16	2.80	39.39	4.20
4270	4542	9.682465	ATTGATCTGATCATTGTATAGGGAATG	57.318	33.333	20.16	0.00	39.39	2.67
4271	4543	8.211030	TGATCTGATCATTGTATAGGGAATGT	57.789	34.615	16.06	0.00	33.59	2.71
4272	4544	9.325248	TGATCTGATCATTGTATAGGGAATGTA	57.675	33.333	16.06	0.00	33.59	2.29
4289	4561	9.159254	AGGGAATGTATATAGAAGACAATGTGA	57.841	33.333	0.00	0.00	0.00	3.58
4290	4562	9.429359	GGGAATGTATATAGAAGACAATGTGAG	57.571	37.037	0.00	0.00	0.00	3.51
4291	4563	9.429359	GGAATGTATATAGAAGACAATGTGAGG	57.571	37.037	0.00	0.00	0.00	3.86
4292	4564	9.429359	GAATGTATATAGAAGACAATGTGAGGG	57.571	37.037	0.00	0.00	0.00	4.30
4293	4565	8.727100	ATGTATATAGAAGACAATGTGAGGGA	57.273	34.615	0.00	0.00	0.00	4.20
4294	4566	8.183104	TGTATATAGAAGACAATGTGAGGGAG	57.817	38.462	0.00	0.00	0.00	4.30
4295	4567	8.004801	TGTATATAGAAGACAATGTGAGGGAGA	58.995	37.037	0.00	0.00	0.00	3.71
4296	4568	5.867903	ATAGAAGACAATGTGAGGGAGAG	57.132	43.478	0.00	0.00	0.00	3.20
4297	4569	3.784178	AGAAGACAATGTGAGGGAGAGA	58.216	45.455	0.00	0.00	0.00	3.10
4298	4570	3.768757	AGAAGACAATGTGAGGGAGAGAG	59.231	47.826	0.00	0.00	0.00	3.20
4299	4571	3.464720	AGACAATGTGAGGGAGAGAGA	57.535	47.619	0.00	0.00	0.00	3.10
4300	4572	3.096092	AGACAATGTGAGGGAGAGAGAC	58.904	50.000	0.00	0.00	0.00	3.36
4301	4573	3.096092	GACAATGTGAGGGAGAGAGACT	58.904	50.000	0.00	0.00	0.00	3.24
4302	4574	3.513515	GACAATGTGAGGGAGAGAGACTT	59.486	47.826	0.00	0.00	0.00	3.01
4303	4575	3.260380	ACAATGTGAGGGAGAGAGACTTG	59.740	47.826	0.00	0.00	0.00	3.16
4304	4576	1.930251	TGTGAGGGAGAGAGACTTGG	58.070	55.000	0.00	0.00	0.00	3.61
4305	4577	1.429299	TGTGAGGGAGAGAGACTTGGA	59.571	52.381	0.00	0.00	0.00	3.53
4306	4578	2.099405	GTGAGGGAGAGAGACTTGGAG	58.901	57.143	0.00	0.00	0.00	3.86
4307	4579	1.713647	TGAGGGAGAGAGACTTGGAGT	59.286	52.381	0.00	0.00	0.00	3.85
4308	4580	2.920271	TGAGGGAGAGAGACTTGGAGTA	59.080	50.000	0.00	0.00	0.00	2.59
4309	4581	3.284617	GAGGGAGAGAGACTTGGAGTAC	58.715	54.545	0.00	0.00	0.00	2.73
4310	4582	2.650322	AGGGAGAGAGACTTGGAGTACA	59.350	50.000	0.00	0.00	0.00	2.90
4311	4583	3.076182	AGGGAGAGAGACTTGGAGTACAA	59.924	47.826	0.00	0.00	37.55	2.41
4326	4598	7.433708	TGGAGTACAAGACAAATTACACATG	57.566	36.000	0.00	0.00	0.00	3.21
4327	4599	6.995686	TGGAGTACAAGACAAATTACACATGT	59.004	34.615	0.00	0.00	0.00	3.21
4328	4600	7.500892	TGGAGTACAAGACAAATTACACATGTT	59.499	33.333	0.00	0.00	0.00	2.71
4329	4601	8.349983	GGAGTACAAGACAAATTACACATGTTT	58.650	33.333	0.00	0.00	0.00	2.83
4330	4602	9.730420	GAGTACAAGACAAATTACACATGTTTT	57.270	29.630	0.00	0.00	0.00	2.43
4334	4606	9.296400	ACAAGACAAATTACACATGTTTTACAC	57.704	29.630	0.00	0.00	0.00	2.90
4335	4607	9.515020	CAAGACAAATTACACATGTTTTACACT	57.485	29.630	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.393680	AGCTGCGACGGAATTTTATTACAA	59.606	37.500	0.00	0.00	0.00	2.41
14	15	2.976509	CAATATGAGAGTAGCTGCGACG	59.023	50.000	7.25	0.00	0.00	5.12
32	33	2.408271	ACATGACGCTGGATCACAAT	57.592	45.000	0.00	0.00	0.00	2.71
41	42	3.122780	TCAAACATCGTTACATGACGCTG	59.877	43.478	0.00	4.39	42.81	5.18
48	49	7.526608	CAAACTACCATCAAACATCGTTACAT	58.473	34.615	0.00	0.00	0.00	2.29
166	167	0.249120	ATGGATGTTTCGTCGGCTCA	59.751	50.000	0.00	0.00	0.00	4.26
172	173	4.455877	AGAGGTTTTCATGGATGTTTCGTC	59.544	41.667	0.00	0.00	0.00	4.20
351	352	8.988934	TCTCGATGTTTTTAGACCAATATATGC	58.011	33.333	0.00	0.00	0.00	3.14
373	377	6.636850	CACCTTACCAAAAAGTTTTCATCTCG	59.363	38.462	0.32	0.00	0.00	4.04
650	844	3.124921	GTGAATCCCACCGTGCCG	61.125	66.667	0.00	0.00	39.86	5.69
661	855	1.949525	CATGGAATCCCACCGTGAATC	59.050	52.381	0.00	0.00	46.98	2.52
662	856	1.284785	ACATGGAATCCCACCGTGAAT	59.715	47.619	12.22	0.00	46.98	2.57
663	857	0.695924	ACATGGAATCCCACCGTGAA	59.304	50.000	12.22	0.00	46.98	3.18
664	858	0.035534	CACATGGAATCCCACCGTGA	60.036	55.000	12.22	0.00	46.98	4.35
665	859	0.035534	TCACATGGAATCCCACCGTG	60.036	55.000	0.00	0.00	46.98	4.94
666	860	0.918983	ATCACATGGAATCCCACCGT	59.081	50.000	0.00	0.00	46.98	4.83
675	869	4.142049	TGCTACATACACGATCACATGGAA	60.142	41.667	0.00	0.00	0.00	3.53
686	880	3.307242	GCCTCTTTTCTGCTACATACACG	59.693	47.826	0.00	0.00	0.00	4.49
777	971	3.393970	CTCCTCCTTCGGCCTGCA	61.394	66.667	0.00	0.00	0.00	4.41
778	972	4.168291	CCTCCTCCTTCGGCCTGC	62.168	72.222	0.00	0.00	0.00	4.85
779	973	2.364317	TCCTCCTCCTTCGGCCTG	60.364	66.667	0.00	0.00	0.00	4.85
780	974	2.042435	CTCCTCCTCCTTCGGCCT	60.042	66.667	0.00	0.00	0.00	5.19
875	1069	3.244700	GGATCATATGGTGTGGAAGGAGG	60.245	52.174	2.13	0.00	0.00	4.30
912	1107	3.003763	GAGGGCCTCTTCCGTGGT	61.004	66.667	26.44	0.00	0.00	4.16
941	1138	3.202151	GGAGGGAGAAGAGAGAAGAGAGA	59.798	52.174	0.00	0.00	0.00	3.10
942	1139	3.203040	AGGAGGGAGAAGAGAGAAGAGAG	59.797	52.174	0.00	0.00	0.00	3.20
943	1140	3.197983	AGGAGGGAGAAGAGAGAAGAGA	58.802	50.000	0.00	0.00	0.00	3.10
944	1141	3.203040	AGAGGAGGGAGAAGAGAGAAGAG	59.797	52.174	0.00	0.00	0.00	2.85
1104	1302	0.179062	GCTGCGTCTCCAGATGGAAT	60.179	55.000	2.65	0.00	44.91	3.01
1855	2053	2.825836	GAACATGCTCCCCTGCCG	60.826	66.667	0.00	0.00	0.00	5.69
2655	2853	6.764560	TCCATGTCAGACACAAGATGATAATG	59.235	38.462	5.05	0.00	38.97	1.90
2689	2890	1.748244	CGTGGGATCCATGTCAGCATT	60.748	52.381	15.23	0.00	35.92	3.56
2871	3076	1.069765	CATGGCGAGCCCGATACTT	59.930	57.895	12.05	0.00	38.22	2.24
3171	3376	1.144057	CATGACGGGGAGGCTGTAC	59.856	63.158	0.00	0.00	0.00	2.90
3395	3612	8.245929	TCCTCTCACCTATATATTACCTCCTT	57.754	38.462	0.00	0.00	0.00	3.36
3418	3638	8.534778	CGTACTAACCAACGTTATTATCTTTCC	58.465	37.037	0.00	0.00	33.98	3.13
3503	3724	1.271379	TGGTCTTGGTCTGCTTTAGCC	60.271	52.381	0.00	0.00	41.18	3.93
3504	3725	2.185004	TGGTCTTGGTCTGCTTTAGC	57.815	50.000	0.00	0.00	42.50	3.09
3505	3726	4.326826	TCATTGGTCTTGGTCTGCTTTAG	58.673	43.478	0.00	0.00	0.00	1.85
3508	3729	2.957402	TCATTGGTCTTGGTCTGCTT	57.043	45.000	0.00	0.00	0.00	3.91
3509	3730	2.619849	CCATCATTGGTCTTGGTCTGCT	60.620	50.000	0.00	0.00	38.30	4.24
3510	3731	1.747355	CCATCATTGGTCTTGGTCTGC	59.253	52.381	0.00	0.00	38.30	4.26
3633	3854	8.664669	AAGGGGAATATACTCATGTTTTTGTT	57.335	30.769	0.00	0.00	0.00	2.83
3689	3910	5.416952	TCAGCAAAATTGGCAAAAAGGAAAA	59.583	32.000	3.01	0.00	0.00	2.29
3690	3911	4.946157	TCAGCAAAATTGGCAAAAAGGAAA	59.054	33.333	3.01	0.00	0.00	3.13
3767	3988	6.430451	AGTTGCTCGTTCAAAATCAAAGTAG	58.570	36.000	0.00	0.00	0.00	2.57
3819	4091	5.462405	CGAAGCAATAGAGTACTGGATACC	58.538	45.833	0.00	0.00	33.85	2.73
3824	4096	3.130516	TGACCGAAGCAATAGAGTACTGG	59.869	47.826	0.00	0.00	0.00	4.00
3827	4099	6.663944	ATTTTGACCGAAGCAATAGAGTAC	57.336	37.500	0.00	0.00	0.00	2.73
3882	4154	6.481644	GGAGAGAACTGGTGATGATACAATTC	59.518	42.308	0.00	0.00	0.00	2.17
3888	4160	5.540337	GGTATGGAGAGAACTGGTGATGATA	59.460	44.000	0.00	0.00	0.00	2.15
3903	4175	7.012607	TCAGATGATCAACATAGGTATGGAGA	58.987	38.462	0.00	0.15	39.56	3.71
3908	4180	8.255111	TGAACTCAGATGATCAACATAGGTAT	57.745	34.615	0.00	0.00	39.56	2.73
3909	4181	7.660030	TGAACTCAGATGATCAACATAGGTA	57.340	36.000	0.00	0.00	39.56	3.08
3910	4182	6.550938	TGAACTCAGATGATCAACATAGGT	57.449	37.500	0.00	0.00	39.56	3.08
3911	4183	7.854557	TTTGAACTCAGATGATCAACATAGG	57.145	36.000	0.00	0.00	39.56	2.57
3949	4221	9.836076	GGATTATTTTAGTTGTCTGTGGTTTAC	57.164	33.333	0.00	0.00	0.00	2.01
3950	4222	9.802039	AGGATTATTTTAGTTGTCTGTGGTTTA	57.198	29.630	0.00	0.00	0.00	2.01
3951	4223	8.706322	AGGATTATTTTAGTTGTCTGTGGTTT	57.294	30.769	0.00	0.00	0.00	3.27
3952	4224	7.942341	TGAGGATTATTTTAGTTGTCTGTGGTT	59.058	33.333	0.00	0.00	0.00	3.67
3953	4225	7.458397	TGAGGATTATTTTAGTTGTCTGTGGT	58.542	34.615	0.00	0.00	0.00	4.16
3954	4226	7.921786	TGAGGATTATTTTAGTTGTCTGTGG	57.078	36.000	0.00	0.00	0.00	4.17
3955	4227	9.831737	CTTTGAGGATTATTTTAGTTGTCTGTG	57.168	33.333	0.00	0.00	0.00	3.66
3956	4228	9.014297	CCTTTGAGGATTATTTTAGTTGTCTGT	57.986	33.333	0.00	0.00	37.67	3.41
3957	4229	7.970614	GCCTTTGAGGATTATTTTAGTTGTCTG	59.029	37.037	0.00	0.00	37.67	3.51
3958	4230	7.890655	AGCCTTTGAGGATTATTTTAGTTGTCT	59.109	33.333	0.00	0.00	37.67	3.41
3959	4231	8.056407	AGCCTTTGAGGATTATTTTAGTTGTC	57.944	34.615	0.00	0.00	37.67	3.18
3960	4232	7.669722	TGAGCCTTTGAGGATTATTTTAGTTGT	59.330	33.333	0.00	0.00	37.67	3.32
3961	4233	8.055279	TGAGCCTTTGAGGATTATTTTAGTTG	57.945	34.615	0.00	0.00	37.67	3.16
3962	4234	8.650143	TTGAGCCTTTGAGGATTATTTTAGTT	57.350	30.769	0.00	0.00	37.67	2.24
3963	4235	8.650143	TTTGAGCCTTTGAGGATTATTTTAGT	57.350	30.769	0.00	0.00	37.67	2.24
3964	4236	9.525409	CATTTGAGCCTTTGAGGATTATTTTAG	57.475	33.333	0.00	0.00	37.67	1.85
3965	4237	8.477256	CCATTTGAGCCTTTGAGGATTATTTTA	58.523	33.333	0.00	0.00	37.67	1.52
3966	4238	7.180766	TCCATTTGAGCCTTTGAGGATTATTTT	59.819	33.333	0.00	0.00	37.67	1.82
3967	4239	6.669154	TCCATTTGAGCCTTTGAGGATTATTT	59.331	34.615	0.00	0.00	37.67	1.40
3968	4240	6.197168	TCCATTTGAGCCTTTGAGGATTATT	58.803	36.000	0.00	0.00	37.67	1.40
3969	4241	5.769835	TCCATTTGAGCCTTTGAGGATTAT	58.230	37.500	0.00	0.00	37.67	1.28
3970	4242	5.191727	TCCATTTGAGCCTTTGAGGATTA	57.808	39.130	0.00	0.00	37.67	1.75
3971	4243	4.051661	TCCATTTGAGCCTTTGAGGATT	57.948	40.909	0.00	0.00	37.67	3.01
3972	4244	3.744940	TCCATTTGAGCCTTTGAGGAT	57.255	42.857	0.00	0.00	37.67	3.24
3973	4245	3.074390	TCTTCCATTTGAGCCTTTGAGGA	59.926	43.478	0.00	0.00	37.67	3.71
3974	4246	3.424703	TCTTCCATTTGAGCCTTTGAGG	58.575	45.455	0.00	0.00	38.80	3.86
3975	4247	5.458041	TTTCTTCCATTTGAGCCTTTGAG	57.542	39.130	0.00	0.00	0.00	3.02
3976	4248	5.279607	CCATTTCTTCCATTTGAGCCTTTGA	60.280	40.000	0.00	0.00	0.00	2.69
3977	4249	4.933400	CCATTTCTTCCATTTGAGCCTTTG	59.067	41.667	0.00	0.00	0.00	2.77
3978	4250	4.564199	GCCATTTCTTCCATTTGAGCCTTT	60.564	41.667	0.00	0.00	0.00	3.11
3979	4251	3.055602	GCCATTTCTTCCATTTGAGCCTT	60.056	43.478	0.00	0.00	0.00	4.35
3980	4252	2.498885	GCCATTTCTTCCATTTGAGCCT	59.501	45.455	0.00	0.00	0.00	4.58
3981	4253	2.736400	CGCCATTTCTTCCATTTGAGCC	60.736	50.000	0.00	0.00	0.00	4.70
3982	4254	2.164219	TCGCCATTTCTTCCATTTGAGC	59.836	45.455	0.00	0.00	0.00	4.26
3983	4255	3.691118	TCTCGCCATTTCTTCCATTTGAG	59.309	43.478	0.00	0.00	0.00	3.02
3984	4256	3.684908	TCTCGCCATTTCTTCCATTTGA	58.315	40.909	0.00	0.00	0.00	2.69
3985	4257	4.156556	TCTTCTCGCCATTTCTTCCATTTG	59.843	41.667	0.00	0.00	0.00	2.32
3986	4258	4.335416	TCTTCTCGCCATTTCTTCCATTT	58.665	39.130	0.00	0.00	0.00	2.32
3987	4259	3.944015	CTCTTCTCGCCATTTCTTCCATT	59.056	43.478	0.00	0.00	0.00	3.16
3988	4260	3.198635	TCTCTTCTCGCCATTTCTTCCAT	59.801	43.478	0.00	0.00	0.00	3.41
3989	4261	2.567169	TCTCTTCTCGCCATTTCTTCCA	59.433	45.455	0.00	0.00	0.00	3.53
3990	4262	3.252974	TCTCTTCTCGCCATTTCTTCC	57.747	47.619	0.00	0.00	0.00	3.46
3991	4263	3.372514	GGTTCTCTTCTCGCCATTTCTTC	59.627	47.826	0.00	0.00	0.00	2.87
3992	4264	3.244561	TGGTTCTCTTCTCGCCATTTCTT	60.245	43.478	0.00	0.00	0.00	2.52
3993	4265	2.303022	TGGTTCTCTTCTCGCCATTTCT	59.697	45.455	0.00	0.00	0.00	2.52
3994	4266	2.416893	GTGGTTCTCTTCTCGCCATTTC	59.583	50.000	0.00	0.00	0.00	2.17
3995	4267	2.224523	TGTGGTTCTCTTCTCGCCATTT	60.225	45.455	0.00	0.00	0.00	2.32
3996	4268	1.347707	TGTGGTTCTCTTCTCGCCATT	59.652	47.619	0.00	0.00	0.00	3.16
3997	4269	0.976641	TGTGGTTCTCTTCTCGCCAT	59.023	50.000	0.00	0.00	0.00	4.40
3998	4270	0.976641	ATGTGGTTCTCTTCTCGCCA	59.023	50.000	0.00	0.00	0.00	5.69
3999	4271	2.930682	GTTATGTGGTTCTCTTCTCGCC	59.069	50.000	0.00	0.00	0.00	5.54
4000	4272	2.930682	GGTTATGTGGTTCTCTTCTCGC	59.069	50.000	0.00	0.00	0.00	5.03
4001	4273	3.927142	GTGGTTATGTGGTTCTCTTCTCG	59.073	47.826	0.00	0.00	0.00	4.04
4002	4274	4.894784	TGTGGTTATGTGGTTCTCTTCTC	58.105	43.478	0.00	0.00	0.00	2.87
4003	4275	4.593206	TCTGTGGTTATGTGGTTCTCTTCT	59.407	41.667	0.00	0.00	0.00	2.85
4004	4276	4.894784	TCTGTGGTTATGTGGTTCTCTTC	58.105	43.478	0.00	0.00	0.00	2.87
4005	4277	4.348168	ACTCTGTGGTTATGTGGTTCTCTT	59.652	41.667	0.00	0.00	0.00	2.85
4006	4278	3.904339	ACTCTGTGGTTATGTGGTTCTCT	59.096	43.478	0.00	0.00	0.00	3.10
4007	4279	4.273148	ACTCTGTGGTTATGTGGTTCTC	57.727	45.455	0.00	0.00	0.00	2.87
4008	4280	4.838986	ACTACTCTGTGGTTATGTGGTTCT	59.161	41.667	0.00	0.00	0.00	3.01
4009	4281	5.148651	ACTACTCTGTGGTTATGTGGTTC	57.851	43.478	0.00	0.00	0.00	3.62
4010	4282	5.305585	CAACTACTCTGTGGTTATGTGGTT	58.694	41.667	0.00	0.00	35.14	3.67
4011	4283	4.802918	GCAACTACTCTGTGGTTATGTGGT	60.803	45.833	0.00	0.00	35.14	4.16
4012	4284	3.684788	GCAACTACTCTGTGGTTATGTGG	59.315	47.826	0.00	0.00	35.14	4.17
4013	4285	3.684788	GGCAACTACTCTGTGGTTATGTG	59.315	47.826	0.00	0.00	35.14	3.21
4014	4286	3.307480	GGGCAACTACTCTGTGGTTATGT	60.307	47.826	0.00	0.00	35.14	2.29
4015	4287	3.270877	GGGCAACTACTCTGTGGTTATG	58.729	50.000	0.00	0.00	35.14	1.90
4016	4288	2.910319	TGGGCAACTACTCTGTGGTTAT	59.090	45.455	0.00	0.00	35.14	1.89
4017	4289	2.038033	GTGGGCAACTACTCTGTGGTTA	59.962	50.000	0.00	0.00	46.07	2.85
4018	4290	1.136828	TGGGCAACTACTCTGTGGTT	58.863	50.000	0.00	0.00	37.72	3.67
4019	4291	0.396811	GTGGGCAACTACTCTGTGGT	59.603	55.000	0.00	0.00	46.07	4.16
4020	4292	3.233355	GTGGGCAACTACTCTGTGG	57.767	57.895	0.00	0.00	46.07	4.17
4028	4300	0.324943	GAGGCTCTTGTGGGCAACTA	59.675	55.000	7.40	0.00	0.00	2.24
4029	4301	1.073897	GAGGCTCTTGTGGGCAACT	59.926	57.895	7.40	0.00	0.00	3.16
4030	4302	0.957888	GAGAGGCTCTTGTGGGCAAC	60.958	60.000	19.80	0.00	0.00	4.17
4031	4303	1.130054	AGAGAGGCTCTTGTGGGCAA	61.130	55.000	19.80	0.00	37.60	4.52
4032	4304	1.537397	AGAGAGGCTCTTGTGGGCA	60.537	57.895	19.80	0.00	37.60	5.36
4033	4305	3.397906	AGAGAGGCTCTTGTGGGC	58.602	61.111	19.80	4.40	37.60	5.36
4038	4310	5.286480	CCGTGAGGTAAGAGAGGCTCTTG	62.286	56.522	19.80	1.83	46.79	3.02
4040	4312	1.757682	CGTGAGGTAAGAGAGGCTCT	58.242	55.000	18.80	18.80	43.37	4.09
4054	4326	2.427245	CCCTAGCCTCCACCGTGAG	61.427	68.421	0.00	0.00	0.00	3.51
4055	4327	2.363795	CCCTAGCCTCCACCGTGA	60.364	66.667	0.00	0.00	0.00	4.35
4056	4328	4.162690	GCCCTAGCCTCCACCGTG	62.163	72.222	0.00	0.00	0.00	4.94
4057	4329	3.925914	AAGCCCTAGCCTCCACCGT	62.926	63.158	0.00	0.00	41.25	4.83
4058	4330	1.335132	TAAAGCCCTAGCCTCCACCG	61.335	60.000	0.00	0.00	41.25	4.94
4059	4331	0.180642	GTAAAGCCCTAGCCTCCACC	59.819	60.000	0.00	0.00	41.25	4.61
4060	4332	0.909623	TGTAAAGCCCTAGCCTCCAC	59.090	55.000	0.00	0.00	41.25	4.02
4061	4333	1.204146	CTGTAAAGCCCTAGCCTCCA	58.796	55.000	0.00	0.00	41.25	3.86
4062	4334	1.414550	CTCTGTAAAGCCCTAGCCTCC	59.585	57.143	0.00	0.00	41.25	4.30
4063	4335	2.364002	CTCTCTGTAAAGCCCTAGCCTC	59.636	54.545	0.00	0.00	41.25	4.70
4064	4336	2.023888	TCTCTCTGTAAAGCCCTAGCCT	60.024	50.000	0.00	0.00	41.25	4.58
4065	4337	2.364002	CTCTCTCTGTAAAGCCCTAGCC	59.636	54.545	0.00	0.00	41.25	3.93
4066	4338	3.292460	TCTCTCTCTGTAAAGCCCTAGC	58.708	50.000	0.00	0.00	40.32	3.42
4067	4339	4.892934	ACATCTCTCTCTGTAAAGCCCTAG	59.107	45.833	0.00	0.00	0.00	3.02
4068	4340	4.646945	CACATCTCTCTCTGTAAAGCCCTA	59.353	45.833	0.00	0.00	0.00	3.53
4069	4341	3.450457	CACATCTCTCTCTGTAAAGCCCT	59.550	47.826	0.00	0.00	0.00	5.19
4070	4342	3.449018	TCACATCTCTCTCTGTAAAGCCC	59.551	47.826	0.00	0.00	0.00	5.19
4071	4343	4.727507	TCACATCTCTCTCTGTAAAGCC	57.272	45.455	0.00	0.00	0.00	4.35
4072	4344	6.147864	AGATCACATCTCTCTCTGTAAAGC	57.852	41.667	0.00	0.00	33.42	3.51
4073	4345	7.502226	ACCTAGATCACATCTCTCTCTGTAAAG	59.498	40.741	0.00	0.00	40.76	1.85
4074	4346	7.350382	ACCTAGATCACATCTCTCTCTGTAAA	58.650	38.462	0.00	0.00	40.76	2.01
4075	4347	6.905736	ACCTAGATCACATCTCTCTCTGTAA	58.094	40.000	0.00	0.00	40.76	2.41
4076	4348	6.508030	ACCTAGATCACATCTCTCTCTGTA	57.492	41.667	0.00	0.00	40.76	2.74
4077	4349	5.387113	ACCTAGATCACATCTCTCTCTGT	57.613	43.478	0.00	0.00	40.76	3.41
4078	4350	5.507817	GCAACCTAGATCACATCTCTCTCTG	60.508	48.000	0.00	0.00	40.76	3.35
4079	4351	4.584325	GCAACCTAGATCACATCTCTCTCT	59.416	45.833	0.00	0.00	40.76	3.10
4080	4352	4.584325	AGCAACCTAGATCACATCTCTCTC	59.416	45.833	0.00	0.00	40.76	3.20
4081	4353	4.341806	CAGCAACCTAGATCACATCTCTCT	59.658	45.833	0.00	0.00	40.76	3.10
4082	4354	4.619973	CAGCAACCTAGATCACATCTCTC	58.380	47.826	0.00	0.00	40.76	3.20
4083	4355	3.181467	GCAGCAACCTAGATCACATCTCT	60.181	47.826	0.00	0.00	40.76	3.10
4084	4356	3.129871	GCAGCAACCTAGATCACATCTC	58.870	50.000	0.00	0.00	40.76	2.75
4085	4357	2.158842	GGCAGCAACCTAGATCACATCT	60.159	50.000	0.00	0.00	43.33	2.90
4086	4358	2.216898	GGCAGCAACCTAGATCACATC	58.783	52.381	0.00	0.00	0.00	3.06
4087	4359	1.561076	TGGCAGCAACCTAGATCACAT	59.439	47.619	0.00	0.00	0.00	3.21
4088	4360	0.983467	TGGCAGCAACCTAGATCACA	59.017	50.000	0.00	0.00	0.00	3.58
4089	4361	1.065854	AGTGGCAGCAACCTAGATCAC	60.066	52.381	0.00	0.00	0.00	3.06
4090	4362	1.279496	AGTGGCAGCAACCTAGATCA	58.721	50.000	0.00	0.00	0.00	2.92
4091	4363	3.070159	TGATAGTGGCAGCAACCTAGATC	59.930	47.826	0.00	0.00	0.00	2.75
4092	4364	3.041211	TGATAGTGGCAGCAACCTAGAT	58.959	45.455	0.00	0.00	0.00	1.98
4093	4365	2.466846	TGATAGTGGCAGCAACCTAGA	58.533	47.619	0.00	0.00	0.00	2.43
4094	4366	2.939103	GTTGATAGTGGCAGCAACCTAG	59.061	50.000	0.00	0.00	35.74	3.02
4095	4367	2.571653	AGTTGATAGTGGCAGCAACCTA	59.428	45.455	14.77	2.42	41.00	3.08
4096	4368	1.352352	AGTTGATAGTGGCAGCAACCT	59.648	47.619	14.77	0.38	41.00	3.50
4097	4369	1.826385	AGTTGATAGTGGCAGCAACC	58.174	50.000	14.77	0.00	41.00	3.77
4098	4370	4.201950	CCATAAGTTGATAGTGGCAGCAAC	60.202	45.833	12.00	12.00	40.54	4.17
4099	4371	3.947196	CCATAAGTTGATAGTGGCAGCAA	59.053	43.478	0.00	0.00	0.00	3.91
4100	4372	3.199727	TCCATAAGTTGATAGTGGCAGCA	59.800	43.478	0.00	0.00	0.00	4.41
4101	4373	3.561725	GTCCATAAGTTGATAGTGGCAGC	59.438	47.826	0.00	0.00	0.00	5.25
4102	4374	4.130118	GGTCCATAAGTTGATAGTGGCAG	58.870	47.826	0.00	0.00	0.00	4.85
4103	4375	3.521531	TGGTCCATAAGTTGATAGTGGCA	59.478	43.478	0.00	0.00	0.00	4.92
4104	4376	4.150897	TGGTCCATAAGTTGATAGTGGC	57.849	45.455	0.00	0.00	0.00	5.01
4105	4377	5.989477	TCTTGGTCCATAAGTTGATAGTGG	58.011	41.667	0.00	0.00	0.00	4.00
4106	4378	7.275183	TCATCTTGGTCCATAAGTTGATAGTG	58.725	38.462	0.00	0.00	32.09	2.74
4107	4379	7.437713	TCATCTTGGTCCATAAGTTGATAGT	57.562	36.000	0.00	0.00	32.09	2.12
4108	4380	7.605691	GGATCATCTTGGTCCATAAGTTGATAG	59.394	40.741	13.63	0.00	46.88	2.08
4109	4381	7.453393	GGATCATCTTGGTCCATAAGTTGATA	58.547	38.462	13.63	0.00	46.88	2.15
4110	4382	6.302269	GGATCATCTTGGTCCATAAGTTGAT	58.698	40.000	13.57	13.57	46.88	2.57
4111	4383	5.684704	GGATCATCTTGGTCCATAAGTTGA	58.315	41.667	1.88	6.75	46.88	3.18
4121	4393	2.883386	GCATCCTTGGATCATCTTGGTC	59.117	50.000	0.00	0.00	0.00	4.02
4122	4394	2.512896	AGCATCCTTGGATCATCTTGGT	59.487	45.455	0.00	0.00	0.00	3.67
4123	4395	3.225177	AGCATCCTTGGATCATCTTGG	57.775	47.619	0.00	0.00	0.00	3.61
4124	4396	4.569761	CAAGCATCCTTGGATCATCTTG	57.430	45.455	15.13	15.13	43.75	3.02
4135	4407	1.237285	GGCGACACACAAGCATCCTT	61.237	55.000	0.00	0.00	0.00	3.36
4136	4408	1.672356	GGCGACACACAAGCATCCT	60.672	57.895	0.00	0.00	0.00	3.24
4137	4409	2.690778	GGGCGACACACAAGCATCC	61.691	63.158	0.00	0.00	0.00	3.51
4138	4410	2.690778	GGGGCGACACACAAGCATC	61.691	63.158	0.00	0.00	0.00	3.91
4139	4411	2.672996	GGGGCGACACACAAGCAT	60.673	61.111	0.00	0.00	0.00	3.79
4140	4412	4.182433	TGGGGCGACACACAAGCA	62.182	61.111	0.00	0.00	40.38	3.91
4146	4418	4.954118	AGAGGGTGGGGCGACACA	62.954	66.667	0.00	0.00	45.84	3.72
4147	4419	4.083862	GAGAGGGTGGGGCGACAC	62.084	72.222	0.00	0.00	40.60	3.67
4148	4420	3.924013	ATGAGAGGGTGGGGCGACA	62.924	63.158	0.00	0.00	0.00	4.35
4149	4421	3.083997	ATGAGAGGGTGGGGCGAC	61.084	66.667	0.00	0.00	0.00	5.19
4150	4422	3.083349	CATGAGAGGGTGGGGCGA	61.083	66.667	0.00	0.00	0.00	5.54
4151	4423	4.864334	GCATGAGAGGGTGGGGCG	62.864	72.222	0.00	0.00	0.00	6.13
4152	4424	4.512914	GGCATGAGAGGGTGGGGC	62.513	72.222	0.00	0.00	0.00	5.80
4153	4425	2.276309	GAAGGCATGAGAGGGTGGGG	62.276	65.000	0.00	0.00	0.00	4.96
4154	4426	1.225704	GAAGGCATGAGAGGGTGGG	59.774	63.158	0.00	0.00	0.00	4.61
4155	4427	0.549950	ATGAAGGCATGAGAGGGTGG	59.450	55.000	0.00	0.00	32.31	4.61
4156	4428	1.489649	AGATGAAGGCATGAGAGGGTG	59.510	52.381	0.00	0.00	34.11	4.61
4157	4429	1.890552	AGATGAAGGCATGAGAGGGT	58.109	50.000	0.00	0.00	34.11	4.34
4158	4430	2.438763	AGAAGATGAAGGCATGAGAGGG	59.561	50.000	0.00	0.00	34.11	4.30
4159	4431	3.842007	AGAAGATGAAGGCATGAGAGG	57.158	47.619	0.00	0.00	34.11	3.69
4160	4432	4.344679	ACCTAGAAGATGAAGGCATGAGAG	59.655	45.833	0.00	0.00	34.11	3.20
4161	4433	4.100653	CACCTAGAAGATGAAGGCATGAGA	59.899	45.833	0.00	0.00	34.11	3.27
4162	4434	4.378774	CACCTAGAAGATGAAGGCATGAG	58.621	47.826	0.00	0.00	34.11	2.90
4163	4435	3.135348	CCACCTAGAAGATGAAGGCATGA	59.865	47.826	0.00	0.00	34.11	3.07
4164	4436	3.474600	CCACCTAGAAGATGAAGGCATG	58.525	50.000	0.00	0.00	34.11	4.06
4165	4437	2.441001	CCCACCTAGAAGATGAAGGCAT	59.559	50.000	0.00	0.00	37.47	4.40
4166	4438	1.839994	CCCACCTAGAAGATGAAGGCA	59.160	52.381	0.00	0.00	33.42	4.75
4167	4439	1.475930	GCCCACCTAGAAGATGAAGGC	60.476	57.143	0.00	0.00	33.42	4.35
4168	4440	1.141858	GGCCCACCTAGAAGATGAAGG	59.858	57.143	0.00	0.00	36.42	3.46
4169	4441	2.629336	GGCCCACCTAGAAGATGAAG	57.371	55.000	0.00	0.00	0.00	3.02
4187	4459	0.034059	CTACATAAGCGCCCAGGAGG	59.966	60.000	2.29	0.00	39.47	4.30
4188	4460	1.040646	TCTACATAAGCGCCCAGGAG	58.959	55.000	2.29	0.00	0.00	3.69
4189	4461	1.491668	TTCTACATAAGCGCCCAGGA	58.508	50.000	2.29	0.00	0.00	3.86
4190	4462	2.325583	TTTCTACATAAGCGCCCAGG	57.674	50.000	2.29	0.00	0.00	4.45
4191	4463	5.700832	TCATATTTTCTACATAAGCGCCCAG	59.299	40.000	2.29	0.00	0.00	4.45
4192	4464	5.616270	TCATATTTTCTACATAAGCGCCCA	58.384	37.500	2.29	0.00	0.00	5.36
4193	4465	6.554334	TTCATATTTTCTACATAAGCGCCC	57.446	37.500	2.29	0.00	0.00	6.13
4194	4466	7.244192	GGATTCATATTTTCTACATAAGCGCC	58.756	38.462	2.29	0.00	0.00	6.53
4195	4467	7.119846	AGGGATTCATATTTTCTACATAAGCGC	59.880	37.037	0.00	0.00	0.00	5.92
4196	4468	8.553459	AGGGATTCATATTTTCTACATAAGCG	57.447	34.615	0.00	0.00	0.00	4.68
4217	4489	9.303116	ACACAATACAACAACAAATATTAGGGA	57.697	29.630	0.00	0.00	0.00	4.20
4226	4498	9.676195	CAGATCAATACACAATACAACAACAAA	57.324	29.630	0.00	0.00	0.00	2.83
4227	4499	9.061435	TCAGATCAATACACAATACAACAACAA	57.939	29.630	0.00	0.00	0.00	2.83
4228	4500	8.614469	TCAGATCAATACACAATACAACAACA	57.386	30.769	0.00	0.00	0.00	3.33
4229	4501	9.708222	GATCAGATCAATACACAATACAACAAC	57.292	33.333	5.44	0.00	0.00	3.32
4230	4502	9.447157	TGATCAGATCAATACACAATACAACAA	57.553	29.630	10.93	0.00	36.11	2.83
4231	4503	9.617523	ATGATCAGATCAATACACAATACAACA	57.382	29.630	17.24	0.00	43.50	3.33
4234	4506	9.617523	ACAATGATCAGATCAATACACAATACA	57.382	29.630	17.24	0.00	43.50	2.29
4239	4511	9.933723	CCTATACAATGATCAGATCAATACACA	57.066	33.333	17.24	1.82	43.50	3.72
4240	4512	9.376075	CCCTATACAATGATCAGATCAATACAC	57.624	37.037	17.24	0.00	43.50	2.90
4241	4513	9.325248	TCCCTATACAATGATCAGATCAATACA	57.675	33.333	17.24	4.18	43.50	2.29
4244	4516	9.682465	CATTCCCTATACAATGATCAGATCAAT	57.318	33.333	17.24	6.15	43.50	2.57
4245	4517	8.663167	ACATTCCCTATACAATGATCAGATCAA	58.337	33.333	17.24	0.96	43.50	2.57
4246	4518	8.211030	ACATTCCCTATACAATGATCAGATCA	57.789	34.615	15.69	15.69	44.55	2.92
4263	4535	9.159254	TCACATTGTCTTCTATATACATTCCCT	57.841	33.333	0.00	0.00	0.00	4.20
4264	4536	9.429359	CTCACATTGTCTTCTATATACATTCCC	57.571	37.037	0.00	0.00	0.00	3.97
4265	4537	9.429359	CCTCACATTGTCTTCTATATACATTCC	57.571	37.037	0.00	0.00	0.00	3.01
4266	4538	9.429359	CCCTCACATTGTCTTCTATATACATTC	57.571	37.037	0.00	0.00	0.00	2.67
4267	4539	9.159254	TCCCTCACATTGTCTTCTATATACATT	57.841	33.333	0.00	0.00	0.00	2.71
4268	4540	8.727100	TCCCTCACATTGTCTTCTATATACAT	57.273	34.615	0.00	0.00	0.00	2.29
4269	4541	8.004801	TCTCCCTCACATTGTCTTCTATATACA	58.995	37.037	0.00	0.00	0.00	2.29
4270	4542	8.410673	TCTCCCTCACATTGTCTTCTATATAC	57.589	38.462	0.00	0.00	0.00	1.47
4271	4543	8.448816	TCTCTCCCTCACATTGTCTTCTATATA	58.551	37.037	0.00	0.00	0.00	0.86
4272	4544	7.301420	TCTCTCCCTCACATTGTCTTCTATAT	58.699	38.462	0.00	0.00	0.00	0.86
4273	4545	6.673583	TCTCTCCCTCACATTGTCTTCTATA	58.326	40.000	0.00	0.00	0.00	1.31
4274	4546	5.523588	TCTCTCCCTCACATTGTCTTCTAT	58.476	41.667	0.00	0.00	0.00	1.98
4275	4547	4.935578	TCTCTCCCTCACATTGTCTTCTA	58.064	43.478	0.00	0.00	0.00	2.10
4276	4548	3.768757	CTCTCTCCCTCACATTGTCTTCT	59.231	47.826	0.00	0.00	0.00	2.85
4277	4549	3.766591	TCTCTCTCCCTCACATTGTCTTC	59.233	47.826	0.00	0.00	0.00	2.87
4278	4550	3.513515	GTCTCTCTCCCTCACATTGTCTT	59.486	47.826	0.00	0.00	0.00	3.01
4279	4551	3.096092	GTCTCTCTCCCTCACATTGTCT	58.904	50.000	0.00	0.00	0.00	3.41
4280	4552	3.096092	AGTCTCTCTCCCTCACATTGTC	58.904	50.000	0.00	0.00	0.00	3.18
4281	4553	3.182887	AGTCTCTCTCCCTCACATTGT	57.817	47.619	0.00	0.00	0.00	2.71
4282	4554	3.369261	CCAAGTCTCTCTCCCTCACATTG	60.369	52.174	0.00	0.00	0.00	2.82
4283	4555	2.836981	CCAAGTCTCTCTCCCTCACATT	59.163	50.000	0.00	0.00	0.00	2.71
4284	4556	2.043664	TCCAAGTCTCTCTCCCTCACAT	59.956	50.000	0.00	0.00	0.00	3.21
4285	4557	1.429299	TCCAAGTCTCTCTCCCTCACA	59.571	52.381	0.00	0.00	0.00	3.58
4286	4558	2.099405	CTCCAAGTCTCTCTCCCTCAC	58.901	57.143	0.00	0.00	0.00	3.51
4287	4559	1.713647	ACTCCAAGTCTCTCTCCCTCA	59.286	52.381	0.00	0.00	0.00	3.86
4288	4560	2.525105	ACTCCAAGTCTCTCTCCCTC	57.475	55.000	0.00	0.00	0.00	4.30
4289	4561	2.650322	TGTACTCCAAGTCTCTCTCCCT	59.350	50.000	0.00	0.00	0.00	4.20
4290	4562	3.088789	TGTACTCCAAGTCTCTCTCCC	57.911	52.381	0.00	0.00	0.00	4.30
4291	4563	4.712122	CTTGTACTCCAAGTCTCTCTCC	57.288	50.000	0.00	0.00	44.64	3.71
4301	4573	7.500892	ACATGTGTAATTTGTCTTGTACTCCAA	59.499	33.333	0.00	0.00	0.00	3.53
4302	4574	6.995686	ACATGTGTAATTTGTCTTGTACTCCA	59.004	34.615	0.00	0.00	0.00	3.86
4303	4575	7.435068	ACATGTGTAATTTGTCTTGTACTCC	57.565	36.000	0.00	0.00	0.00	3.85
4304	4576	9.730420	AAAACATGTGTAATTTGTCTTGTACTC	57.270	29.630	0.00	0.00	0.00	2.59
4308	4580	9.296400	GTGTAAAACATGTGTAATTTGTCTTGT	57.704	29.630	0.00	0.00	0.00	3.16
4309	4581	9.515020	AGTGTAAAACATGTGTAATTTGTCTTG	57.485	29.630	0.00	0.00	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.