Multiple sequence alignment - TraesCS7D01G553000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G553000 chr7D 100.000 8171 0 0 1 8171 635851413 635843243 0.000000e+00 15090.0
1 TraesCS7D01G553000 chr7D 91.920 2537 122 38 5644 8171 635678309 635675847 0.000000e+00 3472.0
2 TraesCS7D01G553000 chr7D 91.838 2536 122 39 5644 8171 636329478 636331936 0.000000e+00 3458.0
3 TraesCS7D01G553000 chr7D 91.855 2259 109 38 4120 6343 635691723 635689505 0.000000e+00 3083.0
4 TraesCS7D01G553000 chr7D 91.497 2258 110 38 4120 6343 636307423 636309632 0.000000e+00 3031.0
5 TraesCS7D01G553000 chr7D 89.139 976 84 12 5525 6485 636515161 636514193 0.000000e+00 1195.0
6 TraesCS7D01G553000 chr7D 91.475 305 10 5 3429 3730 635711614 635711323 9.870000e-109 405.0
7 TraesCS7D01G553000 chr7D 90.492 305 13 5 3429 3730 636300210 636300501 9.940000e-104 388.0
8 TraesCS7D01G553000 chr7D 80.526 570 33 31 7557 8112 635689484 635688979 4.660000e-97 366.0
9 TraesCS7D01G553000 chr7D 80.526 570 33 31 7557 8112 636309653 636310158 4.660000e-97 366.0
10 TraesCS7D01G553000 chr7D 95.288 191 8 1 3874 4063 635707270 635707080 1.330000e-77 302.0
11 TraesCS7D01G553000 chr7D 81.343 134 18 4 1601 1729 452698665 452698796 1.450000e-17 102.0
12 TraesCS7D01G553000 chr7A 91.107 5611 281 93 2608 8147 729937408 729942871 0.000000e+00 7396.0
13 TraesCS7D01G553000 chr7A 88.679 2067 127 39 316 2314 729935102 729937129 0.000000e+00 2422.0
14 TraesCS7D01G553000 chr7A 95.238 105 5 0 1706 1810 492926069 492925965 5.070000e-37 167.0
15 TraesCS7D01G553000 chr7A 81.343 134 18 4 1601 1729 545059704 545059835 1.450000e-17 102.0
16 TraesCS7D01G553000 chr7B 92.733 4431 234 50 2536 6917 739929144 739933535 0.000000e+00 6318.0
17 TraesCS7D01G553000 chr7B 86.927 2532 186 64 1 2457 739926681 739929142 0.000000e+00 2708.0
18 TraesCS7D01G553000 chr7B 89.279 1054 85 19 4860 5893 739962494 739963539 0.000000e+00 1295.0
19 TraesCS7D01G553000 chr7B 85.463 1307 97 34 6876 8158 739933543 739934780 0.000000e+00 1275.0
20 TraesCS7D01G553000 chr7B 81.343 134 18 4 1601 1729 475655794 475655925 1.450000e-17 102.0
21 TraesCS7D01G553000 chr3A 93.968 431 25 1 2320 2750 5545850 5546279 0.000000e+00 651.0
22 TraesCS7D01G553000 chr3A 92.905 451 27 5 2320 2769 13988533 13988087 0.000000e+00 651.0
23 TraesCS7D01G553000 chr3A 93.735 431 26 1 2320 2750 2972875 2973304 0.000000e+00 645.0
24 TraesCS7D01G553000 chr3A 93.735 431 25 2 2320 2750 3492783 3493211 0.000000e+00 645.0
25 TraesCS7D01G553000 chr3A 93.503 431 27 1 2320 2750 3984684 3985113 2.490000e-179 640.0
26 TraesCS7D01G553000 chr3A 93.271 431 28 1 2320 2750 2492853 2493282 1.160000e-177 634.0
27 TraesCS7D01G553000 chr3A 93.271 431 28 1 2320 2750 4547059 4547488 1.160000e-177 634.0
28 TraesCS7D01G553000 chr2D 93.424 441 26 3 2320 2759 647316840 647316402 0.000000e+00 651.0
29 TraesCS7D01G553000 chr2A 92.938 439 27 3 2322 2759 699884942 699884507 3.220000e-178 636.0
30 TraesCS7D01G553000 chr1B 80.461 824 100 39 4961 5771 680884162 680884937 2.560000e-159 573.0
31 TraesCS7D01G553000 chr1B 96.053 76 3 0 1704 1779 144366366 144366291 3.100000e-24 124.0
32 TraesCS7D01G553000 chr1B 85.556 90 12 1 6054 6143 680885184 680885272 8.730000e-15 93.5
33 TraesCS7D01G553000 chr1B 97.619 42 0 1 244 285 482179993 482179953 4.090000e-08 71.3
34 TraesCS7D01G553000 chr1D 78.980 804 83 47 4961 5725 471291197 471291953 3.450000e-128 470.0
35 TraesCS7D01G553000 chr1D 80.435 184 16 9 6186 6349 495269875 495270058 1.110000e-23 122.0
36 TraesCS7D01G553000 chr1D 90.769 65 6 0 6441 6505 495270171 495270235 4.060000e-13 87.9
37 TraesCS7D01G553000 chr4B 83.934 305 32 7 2081 2385 575892208 575892495 8.080000e-70 276.0
38 TraesCS7D01G553000 chr5D 89.781 137 8 6 1706 1838 203945757 203945891 3.920000e-38 171.0
39 TraesCS7D01G553000 chr5D 97.368 38 1 0 2014 2051 526730277 526730314 1.900000e-06 65.8
40 TraesCS7D01G553000 chr5D 94.737 38 2 0 248 285 438149055 438149018 8.860000e-05 60.2
41 TraesCS7D01G553000 chr4A 93.333 105 7 0 1704 1808 296243194 296243090 1.100000e-33 156.0
42 TraesCS7D01G553000 chr6B 87.719 114 14 0 6603 6716 716623321 716623208 5.140000e-27 134.0
43 TraesCS7D01G553000 chrUn 85.000 120 16 2 3935 4053 74813005 74813123 4.010000e-23 121.0
44 TraesCS7D01G553000 chr2B 81.373 102 19 0 6615 6716 172678668 172678769 5.260000e-12 84.2
45 TraesCS7D01G553000 chr2B 92.857 42 3 0 2010 2051 316181535 316181494 2.460000e-05 62.1
46 TraesCS7D01G553000 chr6D 90.909 55 2 3 232 285 52708637 52708689 4.090000e-08 71.3
47 TraesCS7D01G553000 chr6D 89.583 48 4 1 239 285 59092295 59092342 8.860000e-05 60.2
48 TraesCS7D01G553000 chr6A 90.909 55 2 3 232 285 63600743 63600795 4.090000e-08 71.3
49 TraesCS7D01G553000 chr3B 95.238 42 2 0 2010 2051 790136723 790136682 5.290000e-07 67.6
50 TraesCS7D01G553000 chr3D 95.238 42 1 1 244 285 472405007 472405047 1.900000e-06 65.8
51 TraesCS7D01G553000 chr1A 95.238 42 1 1 244 285 459515846 459515806 1.900000e-06 65.8
52 TraesCS7D01G553000 chr5B 94.737 38 2 0 248 285 532695803 532695766 8.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G553000 chr7D 635843243 635851413 8170 True 15090.000000 15090 100.000000 1 8171 1 chr7D.!!$R4 8170
1 TraesCS7D01G553000 chr7D 635675847 635678309 2462 True 3472.000000 3472 91.920000 5644 8171 1 chr7D.!!$R1 2527
2 TraesCS7D01G553000 chr7D 636329478 636331936 2458 False 3458.000000 3458 91.838000 5644 8171 1 chr7D.!!$F3 2527
3 TraesCS7D01G553000 chr7D 635688979 635691723 2744 True 1724.500000 3083 86.190500 4120 8112 2 chr7D.!!$R6 3992
4 TraesCS7D01G553000 chr7D 636307423 636310158 2735 False 1698.500000 3031 86.011500 4120 8112 2 chr7D.!!$F4 3992
5 TraesCS7D01G553000 chr7D 636514193 636515161 968 True 1195.000000 1195 89.139000 5525 6485 1 chr7D.!!$R5 960
6 TraesCS7D01G553000 chr7A 729935102 729942871 7769 False 4909.000000 7396 89.893000 316 8147 2 chr7A.!!$F2 7831
7 TraesCS7D01G553000 chr7B 739926681 739934780 8099 False 3433.666667 6318 88.374333 1 8158 3 chr7B.!!$F3 8157
8 TraesCS7D01G553000 chr7B 739962494 739963539 1045 False 1295.000000 1295 89.279000 4860 5893 1 chr7B.!!$F2 1033
9 TraesCS7D01G553000 chr1B 680884162 680885272 1110 False 333.250000 573 83.008500 4961 6143 2 chr1B.!!$F1 1182
10 TraesCS7D01G553000 chr1D 471291197 471291953 756 False 470.000000 470 78.980000 4961 5725 1 chr1D.!!$F1 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 244 0.040067 CCGGAGCAGCTCAACAAAAC 60.040 55.000 24.09 3.70 31.08 2.43 F
749 815 0.101399 CAAGGTGACGATAGCGAGCT 59.899 55.000 7.69 2.25 41.64 4.09 F
750 816 0.382515 AAGGTGACGATAGCGAGCTC 59.617 55.000 7.69 2.73 41.64 4.09 F
825 906 0.605083 CCCCTGCTTTTCTTTGCTCC 59.395 55.000 0.00 0.00 0.00 4.70 F
1127 1222 0.905357 GGCTTCTACCCTCAGCAAGA 59.095 55.000 0.00 0.00 35.05 3.02 F
1842 1960 0.255604 CCATCACCACCACCATGCTA 59.744 55.000 0.00 0.00 0.00 3.49 F
2502 2640 1.338973 GACCCTTACGACGGATATGCA 59.661 52.381 0.00 0.00 0.00 3.96 F
4389 4622 0.179034 GGATGGTCCATGAGAGGTGC 60.179 60.000 9.76 0.00 36.28 5.01 F
4400 4633 0.253044 GAGAGGTGCCCATACTGCAA 59.747 55.000 0.00 0.00 41.06 4.08 F
5620 5926 0.478072 TTTGTCATGTCACCCTGCCT 59.522 50.000 0.00 0.00 0.00 4.75 F
5809 6119 0.553333 CCTCCCCAATCTCCTTTCCC 59.447 60.000 0.00 0.00 0.00 3.97 F
6430 6793 1.672881 GTCTCCCTGATTGATTTGCCG 59.327 52.381 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1926 0.035056 GTGGTGATGGTGAGAAGGGG 60.035 60.000 0.00 0.0 0.00 4.79 R
1814 1927 0.035056 GGTGGTGATGGTGAGAAGGG 60.035 60.000 0.00 0.0 0.00 3.95 R
1820 1933 0.038021 CATGGTGGTGGTGATGGTGA 59.962 55.000 0.00 0.0 0.00 4.02 R
1823 1936 0.255604 TAGCATGGTGGTGGTGATGG 59.744 55.000 7.89 0.0 0.00 3.51 R
2803 2984 0.882474 ACATCTATCTACGCGGCTCC 59.118 55.000 12.47 0.0 0.00 4.70 R
3641 3852 0.316689 AAAACTGCGGCGAAAGAACG 60.317 50.000 12.98 0.0 36.35 3.95 R
4493 4726 2.015587 GGCAAGCAATCCTTCTCTCTG 58.984 52.381 0.00 0.0 0.00 3.35 R
5620 5926 2.203480 GGAGGCCACAACCTGCAA 60.203 61.111 5.01 0.0 46.76 4.08 R
6042 6398 2.948979 CAACCACCTTTTAGTGTCAGCA 59.051 45.455 0.00 0.0 35.93 4.41 R
6445 6808 1.002430 GGAGTCAATGACAGTGCCTGA 59.998 52.381 16.38 0.0 34.60 3.86 R
7131 7543 1.040646 TCTTCACGCTGTCCTTGAGT 58.959 50.000 0.00 0.0 0.00 3.41 R
7264 7692 1.167851 CCACAACAGGGCACATAGTG 58.832 55.000 0.00 0.0 36.51 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.362237 TGGGCCCATCTTTCCATTTCT 59.638 47.619 24.45 0.00 0.00 2.52
84 86 2.947652 CACAGCCCATCTTGTTATCAGG 59.052 50.000 0.00 0.00 0.00 3.86
89 91 3.763897 GCCCATCTTGTTATCAGGTGTTT 59.236 43.478 0.00 0.00 0.00 2.83
97 99 8.934023 TCTTGTTATCAGGTGTTTAAAATCCT 57.066 30.769 6.61 6.61 0.00 3.24
121 123 4.412207 GAACAAAGATAAACCACGATGCC 58.588 43.478 0.00 0.00 0.00 4.40
123 125 1.663695 AAGATAAACCACGATGCCGG 58.336 50.000 0.00 0.00 40.78 6.13
132 134 2.180204 ACGATGCCGGCTACAATGC 61.180 57.895 29.70 7.75 40.78 3.56
142 144 2.199291 GCTACAATGCCTGTTGATGC 57.801 50.000 2.43 2.38 39.64 3.91
148 150 2.751259 CAATGCCTGTTGATGCACTACT 59.249 45.455 0.00 0.00 40.88 2.57
149 151 2.566833 TGCCTGTTGATGCACTACTT 57.433 45.000 0.00 0.00 31.31 2.24
151 153 4.014569 TGCCTGTTGATGCACTACTTTA 57.985 40.909 0.00 0.00 31.31 1.85
152 154 3.751175 TGCCTGTTGATGCACTACTTTAC 59.249 43.478 0.00 0.00 31.31 2.01
153 155 3.751175 GCCTGTTGATGCACTACTTTACA 59.249 43.478 0.00 0.00 0.00 2.41
154 156 4.396166 GCCTGTTGATGCACTACTTTACAT 59.604 41.667 0.00 0.00 0.00 2.29
155 157 5.584649 GCCTGTTGATGCACTACTTTACATA 59.415 40.000 0.00 0.00 0.00 2.29
156 158 6.238211 GCCTGTTGATGCACTACTTTACATAG 60.238 42.308 0.00 0.00 0.00 2.23
157 159 6.258727 CCTGTTGATGCACTACTTTACATAGG 59.741 42.308 0.00 0.00 0.00 2.57
158 160 6.707290 TGTTGATGCACTACTTTACATAGGT 58.293 36.000 0.00 0.00 0.00 3.08
159 161 7.165485 TGTTGATGCACTACTTTACATAGGTT 58.835 34.615 0.00 0.00 0.00 3.50
160 162 7.119116 TGTTGATGCACTACTTTACATAGGTTG 59.881 37.037 0.00 0.00 0.00 3.77
181 183 3.785325 TGGTCTTGTTATGGGATGGATGA 59.215 43.478 0.00 0.00 0.00 2.92
200 202 3.125656 TGAGATCCAACCCTTGATCCAT 58.874 45.455 0.00 0.00 0.00 3.41
202 204 2.176364 AGATCCAACCCTTGATCCATGG 59.824 50.000 4.97 4.97 0.00 3.66
204 206 0.324552 CCAACCCTTGATCCATGGCA 60.325 55.000 6.96 0.00 0.00 4.92
205 207 1.108776 CAACCCTTGATCCATGGCAG 58.891 55.000 6.96 0.00 0.00 4.85
210 212 2.173519 CCTTGATCCATGGCAGTTTGT 58.826 47.619 6.96 0.00 0.00 2.83
214 216 4.686191 TGATCCATGGCAGTTTGTTTTT 57.314 36.364 6.96 0.00 0.00 1.94
221 223 4.116747 TGGCAGTTTGTTTTTGAACGAT 57.883 36.364 0.00 0.00 0.00 3.73
224 226 4.443063 GGCAGTTTGTTTTTGAACGATACC 59.557 41.667 0.00 0.00 0.00 2.73
225 227 4.145756 GCAGTTTGTTTTTGAACGATACCG 59.854 41.667 0.00 0.00 42.50 4.02
233 235 1.320344 TGAACGATACCGGAGCAGCT 61.320 55.000 9.46 0.00 40.78 4.24
234 236 0.595310 GAACGATACCGGAGCAGCTC 60.595 60.000 14.69 14.69 40.78 4.09
241 243 0.465460 ACCGGAGCAGCTCAACAAAA 60.465 50.000 24.09 0.00 31.08 2.44
242 244 0.040067 CCGGAGCAGCTCAACAAAAC 60.040 55.000 24.09 3.70 31.08 2.43
243 245 0.662619 CGGAGCAGCTCAACAAAACA 59.337 50.000 24.09 0.00 31.08 2.83
244 246 1.597937 CGGAGCAGCTCAACAAAACAC 60.598 52.381 24.09 2.23 31.08 3.32
245 247 1.678101 GGAGCAGCTCAACAAAACACT 59.322 47.619 24.09 0.00 31.08 3.55
247 249 1.678101 AGCAGCTCAACAAAACACTCC 59.322 47.619 0.00 0.00 0.00 3.85
248 250 1.269257 GCAGCTCAACAAAACACTCCC 60.269 52.381 0.00 0.00 0.00 4.30
249 251 1.338020 CAGCTCAACAAAACACTCCCC 59.662 52.381 0.00 0.00 0.00 4.81
262 264 0.908180 ACTCCCCTCCGTTCGGAAAT 60.908 55.000 14.79 0.00 33.41 2.17
268 270 2.354403 CCCTCCGTTCGGAAATAAGTGT 60.354 50.000 14.79 0.00 33.41 3.55
271 273 2.030007 TCCGTTCGGAAATAAGTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
277 279 4.128643 TCGGAAATAAGTGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
334 336 2.763448 ACATCACAAGCTAGAGGAGGAC 59.237 50.000 0.00 0.00 0.00 3.85
335 337 2.909504 TCACAAGCTAGAGGAGGACT 57.090 50.000 0.00 0.00 0.00 3.85
336 338 2.729194 TCACAAGCTAGAGGAGGACTC 58.271 52.381 0.00 0.00 46.98 3.36
392 399 5.505159 GCCACAACGGGAAGTAATTATAAGC 60.505 44.000 0.00 0.00 34.06 3.09
401 408 7.468631 CGGGAAGTAATTATAAGCTTGCACAAT 60.469 37.037 9.86 0.00 32.18 2.71
434 441 9.897744 TCTTTTTGACAAGATAATGAACACATC 57.102 29.630 0.00 0.00 0.00 3.06
443 450 7.798596 AGATAATGAACACATCAGAATGTCC 57.201 36.000 0.00 0.00 44.41 4.02
519 527 5.335348 GCGTTGTGAAAACATAACCTACCAT 60.335 40.000 0.00 0.00 0.00 3.55
538 546 6.949352 ACCATGAATTACAAATAGCAGAGG 57.051 37.500 0.00 0.00 0.00 3.69
541 549 7.284034 ACCATGAATTACAAATAGCAGAGGAAG 59.716 37.037 0.00 0.00 0.00 3.46
658 672 1.538666 CCCATCCACCTCCATTCCC 59.461 63.158 0.00 0.00 0.00 3.97
659 673 1.288508 CCCATCCACCTCCATTCCCA 61.289 60.000 0.00 0.00 0.00 4.37
663 680 0.475632 TCCACCTCCATTCCCACACT 60.476 55.000 0.00 0.00 0.00 3.55
665 682 0.692476 CACCTCCATTCCCACACTCA 59.308 55.000 0.00 0.00 0.00 3.41
677 701 1.229336 ACACTCACCCTCCCCTCTG 60.229 63.158 0.00 0.00 0.00 3.35
703 729 1.809209 GAACAGAGCAGCGAGAGGC 60.809 63.158 0.00 0.00 44.05 4.70
746 812 1.141019 GCCAAGGTGACGATAGCGA 59.859 57.895 7.69 0.00 41.64 4.93
747 813 0.872021 GCCAAGGTGACGATAGCGAG 60.872 60.000 7.69 0.00 41.64 5.03
748 814 0.872021 CCAAGGTGACGATAGCGAGC 60.872 60.000 7.69 0.00 41.64 5.03
749 815 0.101399 CAAGGTGACGATAGCGAGCT 59.899 55.000 7.69 2.25 41.64 4.09
750 816 0.382515 AAGGTGACGATAGCGAGCTC 59.617 55.000 7.69 2.73 41.64 4.09
751 817 1.008309 GGTGACGATAGCGAGCTCC 60.008 63.158 7.69 5.39 41.64 4.70
752 818 1.369448 GTGACGATAGCGAGCTCCG 60.369 63.158 7.69 7.98 41.64 4.63
817 898 3.118629 GGATTTGGATTCCCCTGCTTTTC 60.119 47.826 0.00 0.00 35.38 2.29
819 900 2.999185 TGGATTCCCCTGCTTTTCTT 57.001 45.000 0.00 0.00 35.38 2.52
820 901 3.258722 TGGATTCCCCTGCTTTTCTTT 57.741 42.857 0.00 0.00 35.38 2.52
821 902 2.899256 TGGATTCCCCTGCTTTTCTTTG 59.101 45.455 0.00 0.00 35.38 2.77
823 904 2.086610 TTCCCCTGCTTTTCTTTGCT 57.913 45.000 0.00 0.00 0.00 3.91
824 905 1.620822 TCCCCTGCTTTTCTTTGCTC 58.379 50.000 0.00 0.00 0.00 4.26
825 906 0.605083 CCCCTGCTTTTCTTTGCTCC 59.395 55.000 0.00 0.00 0.00 4.70
849 930 6.972328 CCAGTTTGATGAAAAGAAAGAACGAA 59.028 34.615 0.00 0.00 0.00 3.85
851 932 6.687105 AGTTTGATGAAAAGAAAGAACGAACG 59.313 34.615 0.00 0.00 0.00 3.95
926 1016 7.909267 TCTTGTTTGCTTCGAGATGTTATATG 58.091 34.615 0.00 0.00 0.00 1.78
1016 1108 3.402681 CATGGGGTCGTGGAGGCT 61.403 66.667 0.00 0.00 0.00 4.58
1127 1222 0.905357 GGCTTCTACCCTCAGCAAGA 59.095 55.000 0.00 0.00 35.05 3.02
1289 1393 2.556287 CCAAGCAAAGACGGACGC 59.444 61.111 0.00 0.00 0.00 5.19
1823 1936 4.785453 CGCCCTGCCCCTTCTCAC 62.785 72.222 0.00 0.00 0.00 3.51
1824 1937 4.432741 GCCCTGCCCCTTCTCACC 62.433 72.222 0.00 0.00 0.00 4.02
1825 1938 2.935481 CCCTGCCCCTTCTCACCA 60.935 66.667 0.00 0.00 0.00 4.17
1826 1939 2.311854 CCCTGCCCCTTCTCACCAT 61.312 63.158 0.00 0.00 0.00 3.55
1827 1940 1.225704 CCTGCCCCTTCTCACCATC 59.774 63.158 0.00 0.00 0.00 3.51
1828 1941 1.565390 CCTGCCCCTTCTCACCATCA 61.565 60.000 0.00 0.00 0.00 3.07
1830 1943 1.077429 GCCCCTTCTCACCATCACC 60.077 63.158 0.00 0.00 0.00 4.02
1840 1958 1.304381 ACCATCACCACCACCATGC 60.304 57.895 0.00 0.00 0.00 4.06
1841 1959 1.000521 CCATCACCACCACCATGCT 60.001 57.895 0.00 0.00 0.00 3.79
1842 1960 0.255604 CCATCACCACCACCATGCTA 59.744 55.000 0.00 0.00 0.00 3.49
1859 1977 6.719370 ACCATGCTAAATCCTCTGTTTGTTTA 59.281 34.615 0.00 0.00 0.00 2.01
1868 1986 6.024552 TCCTCTGTTTGTTTATTGGCATTC 57.975 37.500 0.00 0.00 0.00 2.67
1870 1988 5.279406 CCTCTGTTTGTTTATTGGCATTCCA 60.279 40.000 0.00 0.00 41.55 3.53
1888 2006 6.072508 GCATTCCATTTCTGACTGTGTTCTTA 60.073 38.462 0.00 0.00 0.00 2.10
1894 2012 4.322080 TCTGACTGTGTTCTTACTGTGG 57.678 45.455 0.00 0.00 33.63 4.17
1981 2099 2.805546 GAGCAGTACATCGCCGGA 59.194 61.111 5.05 0.00 0.00 5.14
2071 2189 5.892119 AGCTAGGTACAGTACATTGCTAGAA 59.108 40.000 26.04 0.00 46.26 2.10
2116 2246 5.091552 AGTAGGAAGTATGGGTGAAGAACA 58.908 41.667 0.00 0.00 0.00 3.18
2206 2336 4.377760 TTCGGGAGGAGGCGGTCT 62.378 66.667 0.00 0.00 0.00 3.85
2309 2439 5.924825 GGTAAAGCTCTCGACTTTTACTCAA 59.075 40.000 5.00 0.00 38.31 3.02
2370 2500 3.005472 GTGCCATGATGAATGATCCTTGG 59.995 47.826 0.00 0.00 38.72 3.61
2438 2576 6.627690 CAGTAGAAATTGCTGCATTTTCAG 57.372 37.500 33.47 22.72 36.67 3.02
2459 2597 6.064060 TCAGATTTCCATCAGTGTTGTTCTT 58.936 36.000 0.70 0.00 0.00 2.52
2460 2598 6.016860 TCAGATTTCCATCAGTGTTGTTCTTG 60.017 38.462 0.70 0.00 0.00 3.02
2463 2601 3.213506 TCCATCAGTGTTGTTCTTGTGG 58.786 45.455 0.70 0.00 0.00 4.17
2482 2620 5.541845 TGTGGACAGAACATTCAGAACTAG 58.458 41.667 0.00 0.00 0.00 2.57
2484 2622 5.635700 GTGGACAGAACATTCAGAACTAGAC 59.364 44.000 0.00 0.00 0.00 2.59
2489 2627 6.497259 ACAGAACATTCAGAACTAGACCCTTA 59.503 38.462 0.00 0.00 0.00 2.69
2490 2628 6.814146 CAGAACATTCAGAACTAGACCCTTAC 59.186 42.308 0.00 0.00 0.00 2.34
2493 2631 5.105837 ACATTCAGAACTAGACCCTTACGAC 60.106 44.000 0.00 0.00 0.00 4.34
2494 2632 3.005554 TCAGAACTAGACCCTTACGACG 58.994 50.000 0.00 0.00 0.00 5.12
2501 2639 1.612463 AGACCCTTACGACGGATATGC 59.388 52.381 0.00 0.00 0.00 3.14
2502 2640 1.338973 GACCCTTACGACGGATATGCA 59.661 52.381 0.00 0.00 0.00 3.96
2505 2643 3.575256 ACCCTTACGACGGATATGCATAA 59.425 43.478 11.13 0.00 0.00 1.90
2512 2650 6.228273 ACGACGGATATGCATAATTTTCAG 57.772 37.500 11.13 7.04 0.00 3.02
2516 2685 7.095816 CGACGGATATGCATAATTTTCAGTGTA 60.096 37.037 11.13 0.00 0.00 2.90
2559 2728 8.099537 TCTTCTGATAGATATTCATTTCAGGCC 58.900 37.037 0.00 0.00 33.19 5.19
2565 2734 1.766494 ATTCATTTCAGGCCGATGCA 58.234 45.000 0.00 0.00 40.13 3.96
2622 2791 2.026822 AGTGGGTTCCTGCTTATGACTG 60.027 50.000 0.00 0.00 0.00 3.51
2682 2851 9.836864 TGACTAACTCATATGCATGATACTTTT 57.163 29.630 10.16 0.00 40.40 2.27
2712 2892 4.851639 AAAGGCAATGGTCTCTAGTGAT 57.148 40.909 0.00 0.00 0.00 3.06
2746 2927 7.486647 AGGAAAAATGATATGTGAATGCACTC 58.513 34.615 5.18 0.00 45.36 3.51
2756 2937 2.675348 GTGAATGCACTCTGAACTAGCC 59.325 50.000 0.00 0.00 41.84 3.93
2803 2984 2.577449 AAGGTTTTGGTGCAACTTCG 57.423 45.000 2.04 0.00 36.74 3.79
2879 3073 9.793259 ATGTTACTGTTATTTATGGTAGGATGG 57.207 33.333 0.00 0.00 0.00 3.51
2880 3074 8.774183 TGTTACTGTTATTTATGGTAGGATGGT 58.226 33.333 0.00 0.00 0.00 3.55
2881 3075 9.269453 GTTACTGTTATTTATGGTAGGATGGTC 57.731 37.037 0.00 0.00 0.00 4.02
2884 3078 7.569111 ACTGTTATTTATGGTAGGATGGTCTCT 59.431 37.037 0.00 0.00 0.00 3.10
2885 3079 9.090103 CTGTTATTTATGGTAGGATGGTCTCTA 57.910 37.037 0.00 0.00 0.00 2.43
2886 3080 9.090103 TGTTATTTATGGTAGGATGGTCTCTAG 57.910 37.037 0.00 0.00 0.00 2.43
2887 3081 9.091220 GTTATTTATGGTAGGATGGTCTCTAGT 57.909 37.037 0.00 0.00 0.00 2.57
2888 3082 6.978674 TTTATGGTAGGATGGTCTCTAGTG 57.021 41.667 0.00 0.00 0.00 2.74
2889 3083 4.544564 ATGGTAGGATGGTCTCTAGTGT 57.455 45.455 0.00 0.00 0.00 3.55
2890 3084 5.664815 ATGGTAGGATGGTCTCTAGTGTA 57.335 43.478 0.00 0.00 0.00 2.90
2891 3085 5.664815 TGGTAGGATGGTCTCTAGTGTAT 57.335 43.478 0.00 0.00 0.00 2.29
2892 3086 6.775234 TGGTAGGATGGTCTCTAGTGTATA 57.225 41.667 0.00 0.00 0.00 1.47
2893 3087 7.344599 TGGTAGGATGGTCTCTAGTGTATAT 57.655 40.000 0.00 0.00 0.00 0.86
2894 3088 7.766628 TGGTAGGATGGTCTCTAGTGTATATT 58.233 38.462 0.00 0.00 0.00 1.28
2895 3089 7.889073 TGGTAGGATGGTCTCTAGTGTATATTC 59.111 40.741 0.00 0.00 0.00 1.75
2896 3090 7.889073 GGTAGGATGGTCTCTAGTGTATATTCA 59.111 40.741 0.00 0.00 0.00 2.57
2897 3091 7.768807 AGGATGGTCTCTAGTGTATATTCAC 57.231 40.000 4.40 4.40 38.46 3.18
2898 3092 6.722129 AGGATGGTCTCTAGTGTATATTCACC 59.278 42.308 8.69 0.00 38.91 4.02
2899 3093 6.493802 GGATGGTCTCTAGTGTATATTCACCA 59.506 42.308 8.69 2.82 38.91 4.17
3182 3376 7.278203 TCGTAGTTTGTACTCAACATTTTGTCA 59.722 33.333 10.11 0.00 38.10 3.58
3356 3565 9.341078 TGAGCTGTGATTTCTTGCATAAATATA 57.659 29.630 0.00 0.00 0.00 0.86
3577 3786 6.381133 ACCATTGTGATTTCCCTCTTATTTCC 59.619 38.462 0.00 0.00 0.00 3.13
3579 3788 7.124750 CCATTGTGATTTCCCTCTTATTTCCTT 59.875 37.037 0.00 0.00 0.00 3.36
3678 3889 1.455822 TTCCTGTTGATCAAGGGGGT 58.544 50.000 20.65 0.00 0.00 4.95
3908 4119 8.816640 AAACCTGTGAATCAATTGTTTATGAC 57.183 30.769 5.13 2.70 0.00 3.06
3926 4137 2.290260 TGACCTGTGCTTACAATCCTGG 60.290 50.000 0.00 0.00 0.00 4.45
4019 4230 2.091541 AGAGCTCTTCTTGAGGAGACG 58.908 52.381 11.45 0.00 42.87 4.18
4078 4289 6.252599 TCAGGTATGGCATTCTCAGTATTT 57.747 37.500 4.78 0.00 0.00 1.40
4138 4349 6.238676 GCAATCTCACATGATTATGCAGAACT 60.239 38.462 0.00 0.00 37.85 3.01
4139 4350 7.041576 GCAATCTCACATGATTATGCAGAACTA 60.042 37.037 0.00 0.00 37.85 2.24
4140 4351 9.000486 CAATCTCACATGATTATGCAGAACTAT 58.000 33.333 0.00 0.00 37.85 2.12
4144 4355 8.607441 TCACATGATTATGCAGAACTATAACC 57.393 34.615 0.00 0.00 37.85 2.85
4389 4622 0.179034 GGATGGTCCATGAGAGGTGC 60.179 60.000 9.76 0.00 36.28 5.01
4390 4623 0.179034 GATGGTCCATGAGAGGTGCC 60.179 60.000 9.76 0.00 0.00 5.01
4400 4633 0.253044 GAGAGGTGCCCATACTGCAA 59.747 55.000 0.00 0.00 41.06 4.08
4455 4688 1.037579 GGTACAATGGCTTCCCCTGC 61.038 60.000 0.00 0.00 0.00 4.85
4457 4690 0.704076 TACAATGGCTTCCCCTGCTT 59.296 50.000 0.00 0.00 0.00 3.91
4601 4841 3.520187 CCAGTCTTGGCCAAATTGC 57.480 52.632 20.91 9.64 37.73 3.56
5396 5682 1.344763 AGGAACACTGTACTGGCTGAC 59.655 52.381 4.66 0.00 0.00 3.51
5561 5866 8.314021 AGTGACTGTTGTCTACATCATCAATAA 58.686 33.333 0.00 0.00 43.29 1.40
5620 5926 0.478072 TTTGTCATGTCACCCTGCCT 59.522 50.000 0.00 0.00 0.00 4.75
5809 6119 0.553333 CCTCCCCAATCTCCTTTCCC 59.447 60.000 0.00 0.00 0.00 3.97
5919 6265 7.158099 AGAAAAGCCTGAGCGTATTATTTTT 57.842 32.000 0.00 0.00 46.67 1.94
5958 6304 6.981559 CCTTGCAGAAATTCTACTCTAGTACC 59.018 42.308 0.00 0.00 0.00 3.34
5961 6310 7.548097 TGCAGAAATTCTACTCTAGTACCTTG 58.452 38.462 0.00 0.00 0.00 3.61
5962 6311 7.396339 TGCAGAAATTCTACTCTAGTACCTTGA 59.604 37.037 0.00 0.00 0.00 3.02
5965 6314 9.181061 AGAAATTCTACTCTAGTACCTTGAGAC 57.819 37.037 12.41 0.00 36.95 3.36
5971 6320 8.107729 TCTACTCTAGTACCTTGAGACAAATGA 58.892 37.037 12.41 2.08 36.95 2.57
5974 6323 8.037758 ACTCTAGTACCTTGAGACAAATGATTG 58.962 37.037 12.41 0.00 38.21 2.67
5993 6345 7.252612 TGATTGTAGAGGAAAATACCTGTGA 57.747 36.000 0.00 0.00 40.73 3.58
6003 6355 6.433093 AGGAAAATACCTGTGATGTTTACACC 59.567 38.462 0.00 0.00 39.01 4.16
6166 6527 5.163457 ACAAACAGTACAATTTCCCCTGTTG 60.163 40.000 4.31 2.68 43.48 3.33
6167 6528 3.496331 ACAGTACAATTTCCCCTGTTGG 58.504 45.455 0.00 0.00 32.72 3.77
6395 6758 3.278574 TGTTTCCTTCACTGTGTTCTGG 58.721 45.455 7.79 6.29 0.00 3.86
6416 6779 3.401182 GCATGATCTGATCTTGTCTCCC 58.599 50.000 25.32 11.54 36.94 4.30
6425 6788 5.427806 TCTGATCTTGTCTCCCTGATTGATT 59.572 40.000 0.00 0.00 0.00 2.57
6430 6793 1.672881 GTCTCCCTGATTGATTTGCCG 59.327 52.381 0.00 0.00 0.00 5.69
6445 6808 2.593346 TGCCGTGCTTCATTTGTTTT 57.407 40.000 0.00 0.00 0.00 2.43
6727 7090 4.180496 CGTAAGTTCCGCAGTCCC 57.820 61.111 0.00 0.00 0.00 4.46
6745 7108 2.752640 TCGCCCGGTTCTCATCGA 60.753 61.111 0.00 0.00 0.00 3.59
6752 7115 2.531206 CCGGTTCTCATCGAGTTCTTC 58.469 52.381 0.00 0.00 0.00 2.87
6806 7170 5.681179 GCTTACAATCTCCTCTGACCTCTTC 60.681 48.000 0.00 0.00 0.00 2.87
6850 7214 2.874701 GCTCGGTGTCTATCGGTAAGTA 59.125 50.000 0.00 0.00 0.00 2.24
6878 7242 7.413877 GCACTCTGAAATCTTTGTCATCCTAAG 60.414 40.741 0.00 0.00 0.00 2.18
6882 7293 9.436957 TCTGAAATCTTTGTCATCCTAAGTAAC 57.563 33.333 0.00 0.00 0.00 2.50
6917 7328 5.734855 TGCTGAAAGTCTTGAACTGTAAC 57.265 39.130 0.00 0.00 38.58 2.50
6933 7344 7.174253 TGAACTGTAACAAACTTTTCTGACTGT 59.826 33.333 0.00 0.00 0.00 3.55
7264 7692 7.797123 GTGTTGTTGTACTGACAATTAAGTAGC 59.203 37.037 15.21 4.63 46.98 3.58
7419 7847 1.304630 TGTGCCATGGAAGCTGCAT 60.305 52.632 18.40 0.00 35.96 3.96
7420 7848 1.141019 GTGCCATGGAAGCTGCATG 59.859 57.895 18.40 9.58 44.45 4.06
7421 7849 2.106332 GCCATGGAAGCTGCATGC 59.894 61.111 18.40 11.82 43.65 4.06
7422 7850 2.717044 GCCATGGAAGCTGCATGCA 61.717 57.895 21.29 21.29 43.65 3.96
7435 7863 1.167851 GCATGCACTGAACTTGCCTA 58.832 50.000 14.21 0.00 39.39 3.93
7450 7878 6.358974 ACTTGCCTATGTTAATTTGCCTTT 57.641 33.333 0.00 0.00 0.00 3.11
7561 7989 5.048504 CCCAAATTAATCATGATCCTCACCG 60.049 44.000 9.06 0.00 0.00 4.94
7572 8000 6.483307 TCATGATCCTCACCGAAATGTAATTC 59.517 38.462 0.00 0.00 33.67 2.17
7667 8096 8.653191 TGTATGAAGAGTTTTAGAAACTACCCA 58.347 33.333 6.09 5.30 0.00 4.51
7668 8097 9.152595 GTATGAAGAGTTTTAGAAACTACCCAG 57.847 37.037 6.09 0.00 0.00 4.45
7669 8098 7.369551 TGAAGAGTTTTAGAAACTACCCAGA 57.630 36.000 6.09 0.00 0.00 3.86
7675 8106 8.678593 AGTTTTAGAAACTACCCAGAGAAAAG 57.321 34.615 4.36 0.00 0.00 2.27
7693 8141 4.454728 AAAGCAACACAAAGAAGCAGAA 57.545 36.364 0.00 0.00 0.00 3.02
7694 8142 3.427161 AGCAACACAAAGAAGCAGAAC 57.573 42.857 0.00 0.00 0.00 3.01
7695 8143 3.019564 AGCAACACAAAGAAGCAGAACT 58.980 40.909 0.00 0.00 0.00 3.01
7696 8144 3.065925 AGCAACACAAAGAAGCAGAACTC 59.934 43.478 0.00 0.00 0.00 3.01
7697 8145 3.793465 GCAACACAAAGAAGCAGAACTCC 60.793 47.826 0.00 0.00 0.00 3.85
7698 8146 3.281727 ACACAAAGAAGCAGAACTCCA 57.718 42.857 0.00 0.00 0.00 3.86
7699 8147 3.620488 ACACAAAGAAGCAGAACTCCAA 58.380 40.909 0.00 0.00 0.00 3.53
7700 8148 4.016444 ACACAAAGAAGCAGAACTCCAAA 58.984 39.130 0.00 0.00 0.00 3.28
7701 8149 4.096984 ACACAAAGAAGCAGAACTCCAAAG 59.903 41.667 0.00 0.00 0.00 2.77
7702 8150 4.336433 CACAAAGAAGCAGAACTCCAAAGA 59.664 41.667 0.00 0.00 0.00 2.52
7703 8151 4.949856 ACAAAGAAGCAGAACTCCAAAGAA 59.050 37.500 0.00 0.00 0.00 2.52
7704 8152 5.418840 ACAAAGAAGCAGAACTCCAAAGAAA 59.581 36.000 0.00 0.00 0.00 2.52
7715 8163 4.526970 ACTCCAAAGAAAAGCAGAACTCA 58.473 39.130 0.00 0.00 0.00 3.41
7790 8242 7.581011 ACAAAATTTTCTTCACAAGTGTGTC 57.419 32.000 11.06 0.00 45.76 3.67
7820 8284 6.951198 ACTATGACCCAAATCAACATAACCAA 59.049 34.615 0.00 0.00 30.82 3.67
7841 8326 7.530010 ACCAATCAAACAATCATTCTACTTCG 58.470 34.615 0.00 0.00 0.00 3.79
7842 8327 6.470235 CCAATCAAACAATCATTCTACTTCGC 59.530 38.462 0.00 0.00 0.00 4.70
7843 8328 5.545658 TCAAACAATCATTCTACTTCGCC 57.454 39.130 0.00 0.00 0.00 5.54
7844 8329 4.092821 TCAAACAATCATTCTACTTCGCCG 59.907 41.667 0.00 0.00 0.00 6.46
7845 8330 1.933853 ACAATCATTCTACTTCGCCGC 59.066 47.619 0.00 0.00 0.00 6.53
7846 8331 2.205074 CAATCATTCTACTTCGCCGCT 58.795 47.619 0.00 0.00 0.00 5.52
7847 8332 3.181479 ACAATCATTCTACTTCGCCGCTA 60.181 43.478 0.00 0.00 0.00 4.26
7848 8333 2.776312 TCATTCTACTTCGCCGCTAG 57.224 50.000 0.00 0.00 0.00 3.42
7849 8334 1.132588 CATTCTACTTCGCCGCTAGC 58.867 55.000 4.06 4.06 38.52 3.42
7850 8335 1.033574 ATTCTACTTCGCCGCTAGCT 58.966 50.000 13.93 0.00 40.39 3.32
7851 8336 1.671979 TTCTACTTCGCCGCTAGCTA 58.328 50.000 13.93 0.00 40.39 3.32
7852 8337 1.893544 TCTACTTCGCCGCTAGCTAT 58.106 50.000 13.93 0.00 40.39 2.97
7853 8338 1.535896 TCTACTTCGCCGCTAGCTATG 59.464 52.381 13.93 2.19 40.39 2.23
7854 8339 1.535896 CTACTTCGCCGCTAGCTATGA 59.464 52.381 13.93 4.34 40.39 2.15
7855 8340 0.744874 ACTTCGCCGCTAGCTATGAA 59.255 50.000 13.93 11.91 40.39 2.57
7856 8341 1.341531 ACTTCGCCGCTAGCTATGAAT 59.658 47.619 13.93 2.05 40.39 2.57
7857 8342 2.224066 ACTTCGCCGCTAGCTATGAATT 60.224 45.455 13.93 5.12 40.39 2.17
7858 8343 2.065993 TCGCCGCTAGCTATGAATTC 57.934 50.000 13.93 0.00 40.39 2.17
7859 8344 1.071605 CGCCGCTAGCTATGAATTCC 58.928 55.000 13.93 0.00 40.39 3.01
7860 8345 1.337260 CGCCGCTAGCTATGAATTCCT 60.337 52.381 13.93 0.00 40.39 3.36
7861 8346 2.094700 CGCCGCTAGCTATGAATTCCTA 60.095 50.000 13.93 0.00 40.39 2.94
7887 8374 0.803768 CGGACGATCTTGTGGCAGAG 60.804 60.000 0.00 0.00 0.00 3.35
8082 8581 2.279741 GCAACCGAATCAGCTACATGA 58.720 47.619 0.00 0.00 0.00 3.07
8112 8611 9.979270 GAAAATACAGTTACATGTTCAGAGATG 57.021 33.333 2.30 0.00 34.56 2.90
8130 8629 6.279513 GAGATGGATGGTCTCTATGTTAGG 57.720 45.833 0.00 0.00 39.18 2.69
8164 8663 4.757149 CAGCTAACCAACTTACTTCTGCTT 59.243 41.667 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.039618 GGAAAGATGGGCCCACTGAA 59.960 55.000 31.51 2.97 0.00 3.02
28 29 0.032813 ATGGAAAGATGGGCCCACTG 60.033 55.000 31.51 0.00 0.00 3.66
66 68 2.578021 ACACCTGATAACAAGATGGGCT 59.422 45.455 0.00 0.00 0.00 5.19
68 70 7.461182 TTTAAACACCTGATAACAAGATGGG 57.539 36.000 0.00 0.00 0.00 4.00
71 73 9.533831 AGGATTTTAAACACCTGATAACAAGAT 57.466 29.630 10.43 0.00 0.00 2.40
84 86 9.887406 TTATCTTTGTTCGAGGATTTTAAACAC 57.113 29.630 0.00 0.00 30.14 3.32
89 91 8.508875 GTGGTTTATCTTTGTTCGAGGATTTTA 58.491 33.333 0.00 0.00 0.00 1.52
97 99 4.142988 GCATCGTGGTTTATCTTTGTTCGA 60.143 41.667 0.00 0.00 0.00 3.71
123 125 1.473677 TGCATCAACAGGCATTGTAGC 59.526 47.619 11.13 11.13 39.73 3.58
132 134 6.258727 CCTATGTAAAGTAGTGCATCAACAGG 59.741 42.308 0.00 0.00 0.00 4.00
134 136 6.707290 ACCTATGTAAAGTAGTGCATCAACA 58.293 36.000 0.00 0.00 0.00 3.33
142 144 7.159372 ACAAGACCAACCTATGTAAAGTAGTG 58.841 38.462 0.00 0.00 0.00 2.74
148 150 6.887545 CCCATAACAAGACCAACCTATGTAAA 59.112 38.462 0.00 0.00 0.00 2.01
149 151 6.215841 TCCCATAACAAGACCAACCTATGTAA 59.784 38.462 0.00 0.00 0.00 2.41
151 153 4.538490 TCCCATAACAAGACCAACCTATGT 59.462 41.667 0.00 0.00 0.00 2.29
152 154 5.110814 TCCCATAACAAGACCAACCTATG 57.889 43.478 0.00 0.00 0.00 2.23
153 155 5.399038 CCATCCCATAACAAGACCAACCTAT 60.399 44.000 0.00 0.00 0.00 2.57
154 156 4.080015 CCATCCCATAACAAGACCAACCTA 60.080 45.833 0.00 0.00 0.00 3.08
155 157 3.309121 CCATCCCATAACAAGACCAACCT 60.309 47.826 0.00 0.00 0.00 3.50
156 158 3.023832 CCATCCCATAACAAGACCAACC 58.976 50.000 0.00 0.00 0.00 3.77
157 159 3.963129 TCCATCCCATAACAAGACCAAC 58.037 45.455 0.00 0.00 0.00 3.77
158 160 4.229353 TCATCCATCCCATAACAAGACCAA 59.771 41.667 0.00 0.00 0.00 3.67
159 161 3.785325 TCATCCATCCCATAACAAGACCA 59.215 43.478 0.00 0.00 0.00 4.02
160 162 4.103153 TCTCATCCATCCCATAACAAGACC 59.897 45.833 0.00 0.00 0.00 3.85
181 183 2.176364 CCATGGATCAAGGGTTGGATCT 59.824 50.000 5.56 0.00 39.82 2.75
200 202 3.577649 TCGTTCAAAAACAAACTGCCA 57.422 38.095 0.00 0.00 34.93 4.92
202 204 4.145756 CGGTATCGTTCAAAAACAAACTGC 59.854 41.667 0.00 0.00 34.93 4.40
204 206 4.575645 TCCGGTATCGTTCAAAAACAAACT 59.424 37.500 0.00 0.00 34.93 2.66
205 207 4.846509 TCCGGTATCGTTCAAAAACAAAC 58.153 39.130 0.00 0.00 34.93 2.93
210 212 2.739913 CTGCTCCGGTATCGTTCAAAAA 59.260 45.455 0.00 0.00 33.95 1.94
214 216 1.141019 GCTGCTCCGGTATCGTTCA 59.859 57.895 0.00 0.00 33.95 3.18
221 223 0.394938 TTTGTTGAGCTGCTCCGGTA 59.605 50.000 25.61 5.23 0.00 4.02
224 226 0.662619 TGTTTTGTTGAGCTGCTCCG 59.337 50.000 25.61 0.00 0.00 4.63
225 227 1.678101 AGTGTTTTGTTGAGCTGCTCC 59.322 47.619 25.61 12.52 0.00 4.70
233 235 1.476110 CGGAGGGGAGTGTTTTGTTGA 60.476 52.381 0.00 0.00 0.00 3.18
234 236 0.951558 CGGAGGGGAGTGTTTTGTTG 59.048 55.000 0.00 0.00 0.00 3.33
241 243 2.995574 CCGAACGGAGGGGAGTGT 60.996 66.667 7.53 0.00 37.50 3.55
242 244 1.823169 TTTCCGAACGGAGGGGAGTG 61.823 60.000 15.34 0.00 46.06 3.51
243 245 0.908180 ATTTCCGAACGGAGGGGAGT 60.908 55.000 15.34 0.00 46.06 3.85
244 246 1.117150 TATTTCCGAACGGAGGGGAG 58.883 55.000 15.34 0.00 46.06 4.30
245 247 1.483415 CTTATTTCCGAACGGAGGGGA 59.517 52.381 15.34 4.94 46.06 4.81
247 249 2.277084 CACTTATTTCCGAACGGAGGG 58.723 52.381 15.34 2.00 46.06 4.30
248 250 2.928116 GACACTTATTTCCGAACGGAGG 59.072 50.000 15.34 7.95 46.06 4.30
249 251 2.597305 CGACACTTATTTCCGAACGGAG 59.403 50.000 15.34 6.93 46.06 4.63
262 264 8.659925 TTATTGAACTAAAACCACGACACTTA 57.340 30.769 0.00 0.00 0.00 2.24
294 296 9.118300 TGTGATGTATTGTATTGTATTGCATCA 57.882 29.630 0.00 0.00 38.15 3.07
295 297 9.949174 TTGTGATGTATTGTATTGTATTGCATC 57.051 29.630 0.00 0.00 0.00 3.91
296 298 9.955208 CTTGTGATGTATTGTATTGTATTGCAT 57.045 29.630 0.00 0.00 0.00 3.96
297 299 7.914871 GCTTGTGATGTATTGTATTGTATTGCA 59.085 33.333 0.00 0.00 0.00 4.08
298 300 8.131100 AGCTTGTGATGTATTGTATTGTATTGC 58.869 33.333 0.00 0.00 0.00 3.56
303 305 7.712639 CCTCTAGCTTGTGATGTATTGTATTGT 59.287 37.037 0.00 0.00 0.00 2.71
307 309 6.040955 CCTCCTCTAGCTTGTGATGTATTGTA 59.959 42.308 0.00 0.00 0.00 2.41
312 314 3.954904 GTCCTCCTCTAGCTTGTGATGTA 59.045 47.826 0.00 0.00 0.00 2.29
334 336 1.817099 GGAGCGGCTTCATGTGGAG 60.817 63.158 2.97 0.00 0.00 3.86
335 337 2.268920 GGAGCGGCTTCATGTGGA 59.731 61.111 2.97 0.00 0.00 4.02
336 338 3.197790 CGGAGCGGCTTCATGTGG 61.198 66.667 9.34 0.00 0.00 4.17
338 340 2.125512 GACGGAGCGGCTTCATGT 60.126 61.111 9.34 0.00 0.00 3.21
339 341 3.257561 CGACGGAGCGGCTTCATG 61.258 66.667 9.34 0.00 29.68 3.07
373 380 5.883673 TGCAAGCTTATAATTACTTCCCGTT 59.116 36.000 0.00 0.00 0.00 4.44
374 381 5.296035 GTGCAAGCTTATAATTACTTCCCGT 59.704 40.000 0.00 0.00 0.00 5.28
375 382 5.295787 TGTGCAAGCTTATAATTACTTCCCG 59.704 40.000 0.00 0.00 0.00 5.14
392 399 9.985318 TGTCAAAAAGAAAATTTATTGTGCAAG 57.015 25.926 0.00 0.00 0.00 4.01
408 415 9.897744 GATGTGTTCATTATCTTGTCAAAAAGA 57.102 29.630 0.00 0.00 36.20 2.52
409 416 9.681692 TGATGTGTTCATTATCTTGTCAAAAAG 57.318 29.630 0.00 0.00 34.06 2.27
433 440 5.551233 CTGGTTCTTGTAAGGACATTCTGA 58.449 41.667 5.48 0.00 36.18 3.27
434 441 4.154918 GCTGGTTCTTGTAAGGACATTCTG 59.845 45.833 5.48 0.00 36.18 3.02
443 450 2.030805 GCTGGTTGCTGGTTCTTGTAAG 60.031 50.000 0.00 0.00 38.95 2.34
498 506 7.825331 TTCATGGTAGGTTATGTTTTCACAA 57.175 32.000 0.00 0.00 36.16 3.33
519 527 9.383519 CTTACTTCCTCTGCTATTTGTAATTCA 57.616 33.333 0.00 0.00 0.00 2.57
538 546 5.217400 TCCTCCTATTTCCTCCCTTACTTC 58.783 45.833 0.00 0.00 0.00 3.01
541 549 3.904965 CCTCCTCCTATTTCCTCCCTTAC 59.095 52.174 0.00 0.00 0.00 2.34
658 672 1.229336 AGAGGGGAGGGTGAGTGTG 60.229 63.158 0.00 0.00 0.00 3.82
659 673 1.229336 CAGAGGGGAGGGTGAGTGT 60.229 63.158 0.00 0.00 0.00 3.55
663 680 0.491823 TCTTTCAGAGGGGAGGGTGA 59.508 55.000 0.00 0.00 0.00 4.02
665 682 1.988846 CTTTCTTTCAGAGGGGAGGGT 59.011 52.381 0.00 0.00 0.00 4.34
677 701 2.802816 TCGCTGCTCTGTTCTTTCTTTC 59.197 45.455 0.00 0.00 0.00 2.62
703 729 0.755686 GGAGATGGGCTACAGGAGTG 59.244 60.000 0.00 0.00 0.00 3.51
748 814 1.502163 GGAAATGCGATGGAGCGGAG 61.502 60.000 0.00 0.00 40.67 4.63
749 815 1.523711 GGAAATGCGATGGAGCGGA 60.524 57.895 0.00 0.00 40.67 5.54
750 816 1.502163 GAGGAAATGCGATGGAGCGG 61.502 60.000 0.00 0.00 40.67 5.52
751 817 0.531532 AGAGGAAATGCGATGGAGCG 60.532 55.000 0.00 0.00 40.67 5.03
752 818 1.224965 GAGAGGAAATGCGATGGAGC 58.775 55.000 0.00 0.00 37.71 4.70
753 819 1.871408 CGGAGAGGAAATGCGATGGAG 60.871 57.143 0.00 0.00 32.76 3.86
754 820 0.104855 CGGAGAGGAAATGCGATGGA 59.895 55.000 0.00 0.00 32.76 3.41
755 821 0.104855 TCGGAGAGGAAATGCGATGG 59.895 55.000 0.00 0.00 35.50 3.51
756 822 3.667448 TCGGAGAGGAAATGCGATG 57.333 52.632 0.00 0.00 35.50 3.84
758 824 1.338337 GAGATCGGAGAGGAAATGCGA 59.662 52.381 0.00 0.00 43.63 5.10
759 825 1.339610 AGAGATCGGAGAGGAAATGCG 59.660 52.381 0.00 0.00 43.63 4.73
760 826 3.069443 AGAAGAGATCGGAGAGGAAATGC 59.931 47.826 0.00 0.00 43.63 3.56
803 884 2.564504 GAGCAAAGAAAAGCAGGGGAAT 59.435 45.455 0.00 0.00 0.00 3.01
817 898 5.835257 TCTTTTCATCAAACTGGAGCAAAG 58.165 37.500 0.00 0.00 0.00 2.77
819 900 5.850557 TTCTTTTCATCAAACTGGAGCAA 57.149 34.783 0.00 0.00 0.00 3.91
820 901 5.593909 TCTTTCTTTTCATCAAACTGGAGCA 59.406 36.000 0.00 0.00 0.00 4.26
821 902 6.076981 TCTTTCTTTTCATCAAACTGGAGC 57.923 37.500 0.00 0.00 0.00 4.70
823 904 6.317642 TCGTTCTTTCTTTTCATCAAACTGGA 59.682 34.615 0.00 0.00 0.00 3.86
824 905 6.494842 TCGTTCTTTCTTTTCATCAAACTGG 58.505 36.000 0.00 0.00 0.00 4.00
825 906 7.304849 CGTTCGTTCTTTCTTTTCATCAAACTG 60.305 37.037 0.00 0.00 0.00 3.16
868 949 7.174772 TCTCAGGATTTCATCAAATCAAACGAA 59.825 33.333 4.36 0.00 46.94 3.85
870 951 6.845302 TCTCAGGATTTCATCAAATCAAACG 58.155 36.000 4.36 0.00 46.94 3.60
1016 1108 3.781307 CGAACCCCGGCATCCTCA 61.781 66.667 0.00 0.00 33.91 3.86
1215 1319 4.465512 CCATTGGCGTGCGTCTGC 62.466 66.667 0.00 0.00 43.20 4.26
1216 1320 4.465512 GCCATTGGCGTGCGTCTG 62.466 66.667 12.82 0.00 39.62 3.51
1392 1496 2.678580 TCGCCGTCCATGGACAGA 60.679 61.111 37.42 29.68 44.77 3.41
1485 1598 3.726517 CGGTGCGGGAACTTGCAG 61.727 66.667 0.00 0.00 39.90 4.41
1810 1923 0.393537 GTGATGGTGAGAAGGGGCAG 60.394 60.000 0.00 0.00 0.00 4.85
1813 1926 0.035056 GTGGTGATGGTGAGAAGGGG 60.035 60.000 0.00 0.00 0.00 4.79
1814 1927 0.035056 GGTGGTGATGGTGAGAAGGG 60.035 60.000 0.00 0.00 0.00 3.95
1815 1928 0.692476 TGGTGGTGATGGTGAGAAGG 59.308 55.000 0.00 0.00 0.00 3.46
1816 1929 1.611673 GGTGGTGGTGATGGTGAGAAG 60.612 57.143 0.00 0.00 0.00 2.85
1819 1932 0.329261 ATGGTGGTGGTGATGGTGAG 59.671 55.000 0.00 0.00 0.00 3.51
1820 1933 0.038021 CATGGTGGTGGTGATGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
1821 1934 1.597797 GCATGGTGGTGGTGATGGTG 61.598 60.000 0.00 0.00 0.00 4.17
1822 1935 1.304381 GCATGGTGGTGGTGATGGT 60.304 57.895 0.00 0.00 0.00 3.55
1823 1936 0.255604 TAGCATGGTGGTGGTGATGG 59.744 55.000 7.89 0.00 0.00 3.51
1824 1937 2.127271 TTAGCATGGTGGTGGTGATG 57.873 50.000 7.89 0.00 0.00 3.07
1825 1938 2.897271 TTTAGCATGGTGGTGGTGAT 57.103 45.000 7.89 0.00 0.00 3.06
1826 1939 2.620367 GGATTTAGCATGGTGGTGGTGA 60.620 50.000 7.89 0.00 0.00 4.02
1827 1940 1.750778 GGATTTAGCATGGTGGTGGTG 59.249 52.381 7.89 0.00 0.00 4.17
1828 1941 1.640670 AGGATTTAGCATGGTGGTGGT 59.359 47.619 7.89 0.00 0.00 4.16
1830 1943 2.947652 CAGAGGATTTAGCATGGTGGTG 59.052 50.000 7.89 0.00 0.00 4.17
1840 1958 7.601856 TGCCAATAAACAAACAGAGGATTTAG 58.398 34.615 0.00 0.00 0.00 1.85
1841 1959 7.531857 TGCCAATAAACAAACAGAGGATTTA 57.468 32.000 0.00 0.00 0.00 1.40
1842 1960 6.418057 TGCCAATAAACAAACAGAGGATTT 57.582 33.333 0.00 0.00 0.00 2.17
1868 1986 5.760253 ACAGTAAGAACACAGTCAGAAATGG 59.240 40.000 0.00 0.00 0.00 3.16
1870 1988 5.760253 CCACAGTAAGAACACAGTCAGAAAT 59.240 40.000 0.00 0.00 0.00 2.17
1888 2006 0.532573 CACGCCTAGATCACCACAGT 59.467 55.000 0.00 0.00 0.00 3.55
1894 2012 1.335496 GTCCTCTCACGCCTAGATCAC 59.665 57.143 0.00 0.00 0.00 3.06
1960 2078 1.299468 GGCGATGTACTGCTCGAGG 60.299 63.158 15.58 0.17 37.05 4.63
2116 2246 3.726557 TGGAAGCATGTCATCCTTTCT 57.273 42.857 12.68 0.00 33.80 2.52
2143 2273 0.973632 ATGGCGCATATCTACGGGAA 59.026 50.000 10.83 0.00 0.00 3.97
2147 2277 3.116300 GACCATATGGCGCATATCTACG 58.884 50.000 22.18 0.00 35.18 3.51
2318 2448 3.429272 CCGGCATTTTCATTGTAGCACAT 60.429 43.478 0.00 0.00 0.00 3.21
2350 2480 2.561419 CCCAAGGATCATTCATCATGGC 59.439 50.000 0.00 0.00 38.13 4.40
2370 2500 6.600822 TGTACTCCTACTAGATAACACACACC 59.399 42.308 0.00 0.00 0.00 4.16
2438 2576 5.916883 CACAAGAACAACACTGATGGAAATC 59.083 40.000 0.00 0.00 0.00 2.17
2459 2597 4.422073 AGTTCTGAATGTTCTGTCCACA 57.578 40.909 0.00 0.00 0.00 4.17
2460 2598 5.635700 GTCTAGTTCTGAATGTTCTGTCCAC 59.364 44.000 0.00 0.00 0.00 4.02
2463 2601 5.046950 AGGGTCTAGTTCTGAATGTTCTGTC 60.047 44.000 0.00 0.00 0.00 3.51
2482 2620 1.338973 TGCATATCCGTCGTAAGGGTC 59.661 52.381 0.00 0.00 38.47 4.46
2484 2622 2.743636 ATGCATATCCGTCGTAAGGG 57.256 50.000 0.00 0.00 38.47 3.95
2489 2627 5.758296 ACTGAAAATTATGCATATCCGTCGT 59.242 36.000 7.36 4.17 0.00 4.34
2490 2628 6.073369 CACTGAAAATTATGCATATCCGTCG 58.927 40.000 7.36 3.65 0.00 5.12
2493 2631 9.973246 GTATACACTGAAAATTATGCATATCCG 57.027 33.333 7.36 1.34 0.00 4.18
2512 2650 8.825745 AGAAGAGTAGTAGCGTTTAGTATACAC 58.174 37.037 5.50 0.00 0.00 2.90
2516 2685 8.680039 ATCAGAAGAGTAGTAGCGTTTAGTAT 57.320 34.615 0.00 0.00 0.00 2.12
2521 2690 7.811117 ATCTATCAGAAGAGTAGTAGCGTTT 57.189 36.000 0.00 0.00 0.00 3.60
2559 2728 3.541071 TTGACTCAACAATGTGCATCG 57.459 42.857 0.00 0.00 0.00 3.84
2622 2791 7.843490 TCACTATGTAAAGCCTTAATGACAC 57.157 36.000 0.00 0.00 0.00 3.67
2682 2851 6.883744 AGAGACCATTGCCTTTTTGTAAAAA 58.116 32.000 2.89 2.89 36.53 1.94
2690 2859 4.640771 TCACTAGAGACCATTGCCTTTT 57.359 40.909 0.00 0.00 0.00 2.27
2746 2927 3.712187 GCTAGTTAGCTGGCTAGTTCAG 58.288 50.000 20.32 9.82 44.51 3.02
2803 2984 0.882474 ACATCTATCTACGCGGCTCC 59.118 55.000 12.47 0.00 0.00 4.70
2811 2992 6.753180 TGGAATGCAGAGAACATCTATCTAC 58.247 40.000 0.00 0.00 36.10 2.59
2879 3073 8.172352 ACAGATGGTGAATATACACTAGAGAC 57.828 38.462 0.00 0.00 40.22 3.36
2880 3074 8.768501 AACAGATGGTGAATATACACTAGAGA 57.231 34.615 0.00 0.00 40.22 3.10
2881 3075 9.900710 GTAACAGATGGTGAATATACACTAGAG 57.099 37.037 0.00 0.00 40.22 2.43
2884 3078 9.642343 AGAGTAACAGATGGTGAATATACACTA 57.358 33.333 0.00 0.00 40.22 2.74
2885 3079 8.417106 CAGAGTAACAGATGGTGAATATACACT 58.583 37.037 0.00 0.00 40.22 3.55
2886 3080 8.414003 TCAGAGTAACAGATGGTGAATATACAC 58.586 37.037 0.00 0.00 39.70 2.90
2887 3081 8.533569 TCAGAGTAACAGATGGTGAATATACA 57.466 34.615 0.00 0.00 0.00 2.29
2888 3082 9.250624 GTTCAGAGTAACAGATGGTGAATATAC 57.749 37.037 0.00 0.00 0.00 1.47
2889 3083 9.201989 AGTTCAGAGTAACAGATGGTGAATATA 57.798 33.333 0.00 0.00 0.00 0.86
2890 3084 8.083828 AGTTCAGAGTAACAGATGGTGAATAT 57.916 34.615 0.00 0.00 0.00 1.28
2891 3085 7.482169 AGTTCAGAGTAACAGATGGTGAATA 57.518 36.000 0.00 0.00 0.00 1.75
2892 3086 6.365970 AGTTCAGAGTAACAGATGGTGAAT 57.634 37.500 0.00 0.00 0.00 2.57
2893 3087 5.808366 AGTTCAGAGTAACAGATGGTGAA 57.192 39.130 0.00 0.00 0.00 3.18
2894 3088 5.808366 AAGTTCAGAGTAACAGATGGTGA 57.192 39.130 0.00 0.00 0.00 4.02
2895 3089 6.867662 AAAAGTTCAGAGTAACAGATGGTG 57.132 37.500 0.00 0.00 0.00 4.17
2962 3156 8.483758 GGGAAGTATAGAAGGAAGTGTGAAATA 58.516 37.037 0.00 0.00 0.00 1.40
3157 3351 7.403421 TGACAAAATGTTGAGTACAAACTACG 58.597 34.615 1.62 0.00 40.89 3.51
3182 3376 9.755122 AAAGGCTAATCTTCCTAAACAAAGTAT 57.245 29.630 0.00 0.00 31.24 2.12
3502 3711 1.859302 AGCTCCCTAGTTGTCTGAGG 58.141 55.000 0.00 0.00 0.00 3.86
3577 3786 5.808540 CCAATGTACATGAATGGCTTCAAAG 59.191 40.000 9.63 3.47 44.29 2.77
3579 3788 5.015515 TCCAATGTACATGAATGGCTTCAA 58.984 37.500 17.03 1.04 44.29 2.69
3641 3852 0.316689 AAAACTGCGGCGAAAGAACG 60.317 50.000 12.98 0.00 36.35 3.95
3878 4089 4.759693 ACAATTGATTCACAGGTTTCGCTA 59.240 37.500 13.59 0.00 0.00 4.26
3908 4119 2.026822 AGTCCAGGATTGTAAGCACAGG 60.027 50.000 0.00 0.00 35.67 4.00
4019 4230 2.358615 TCATGTGGACGCTGGCAC 60.359 61.111 0.00 0.00 0.00 5.01
4078 4289 4.695606 AGTAGGATGGTAGAAGTCCCAAA 58.304 43.478 0.00 0.00 33.66 3.28
4138 4349 6.829298 TGGACACACACAAAGAAAAGGTTATA 59.171 34.615 0.00 0.00 0.00 0.98
4139 4350 5.654650 TGGACACACACAAAGAAAAGGTTAT 59.345 36.000 0.00 0.00 0.00 1.89
4140 4351 5.010933 TGGACACACACAAAGAAAAGGTTA 58.989 37.500 0.00 0.00 0.00 2.85
4142 4353 3.192633 GTGGACACACACAAAGAAAAGGT 59.807 43.478 0.00 0.00 46.90 3.50
4386 4619 3.005791 AGAAACTTTTGCAGTATGGGCAC 59.994 43.478 0.00 0.00 41.75 5.01
4389 4622 4.853924 ACAGAAACTTTTGCAGTATGGG 57.146 40.909 0.00 0.00 32.94 4.00
4390 4623 6.970484 AGTTACAGAAACTTTTGCAGTATGG 58.030 36.000 0.00 0.00 46.61 2.74
4493 4726 2.015587 GGCAAGCAATCCTTCTCTCTG 58.984 52.381 0.00 0.00 0.00 3.35
5096 5346 6.639632 AACAGTTGCAGAAATAGACATTGT 57.360 33.333 0.00 0.00 0.00 2.71
5098 5348 6.127897 GCCTAACAGTTGCAGAAATAGACATT 60.128 38.462 0.00 0.00 0.00 2.71
5620 5926 2.203480 GGAGGCCACAACCTGCAA 60.203 61.111 5.01 0.00 46.76 4.08
5809 6119 4.744570 TGTGCCGAAAAGTATAGAGACAG 58.255 43.478 0.00 0.00 0.00 3.51
5919 6265 4.231273 TCTGCAAGGGAGCATACCTATAA 58.769 43.478 0.00 0.00 44.68 0.98
5958 6304 7.912056 TTCCTCTACAATCATTTGTCTCAAG 57.088 36.000 0.00 0.00 42.43 3.02
5962 6311 9.178758 GGTATTTTCCTCTACAATCATTTGTCT 57.821 33.333 0.00 0.00 42.43 3.41
5965 6314 8.960591 ACAGGTATTTTCCTCTACAATCATTTG 58.039 33.333 0.00 0.00 35.37 2.32
5971 6320 7.633789 ACATCACAGGTATTTTCCTCTACAAT 58.366 34.615 0.00 0.00 35.37 2.71
5974 6323 7.923414 AAACATCACAGGTATTTTCCTCTAC 57.077 36.000 0.00 0.00 35.37 2.59
5993 6345 4.641094 TCAAACAAACTCCGGTGTAAACAT 59.359 37.500 10.03 0.00 0.00 2.71
6042 6398 2.948979 CAACCACCTTTTAGTGTCAGCA 59.051 45.455 0.00 0.00 35.93 4.41
6166 6527 3.024547 GAGAAGGTAAAAATCCTGCCCC 58.975 50.000 0.00 0.00 35.27 5.80
6167 6528 3.024547 GGAGAAGGTAAAAATCCTGCCC 58.975 50.000 0.00 0.00 35.27 5.36
6168 6529 3.697166 TGGAGAAGGTAAAAATCCTGCC 58.303 45.455 0.00 0.00 35.27 4.85
6169 6530 5.654209 AGAATGGAGAAGGTAAAAATCCTGC 59.346 40.000 0.00 0.00 35.27 4.85
6395 6758 3.071312 AGGGAGACAAGATCAGATCATGC 59.929 47.826 14.37 8.28 31.54 4.06
6416 6779 2.095110 TGAAGCACGGCAAATCAATCAG 60.095 45.455 0.00 0.00 0.00 2.90
6425 6788 2.593346 AAACAAATGAAGCACGGCAA 57.407 40.000 0.00 0.00 0.00 4.52
6430 6793 3.245990 GTGCCTGAAAACAAATGAAGCAC 59.754 43.478 0.00 0.00 40.95 4.40
6445 6808 1.002430 GGAGTCAATGACAGTGCCTGA 59.998 52.381 16.38 0.00 34.60 3.86
6570 6933 5.532406 TCAATCCTCACCTCAAACTCAAAAG 59.468 40.000 0.00 0.00 0.00 2.27
6727 7090 2.278857 CGATGAGAACCGGGCGAG 60.279 66.667 6.32 0.00 0.00 5.03
6745 7108 5.334414 GCTCATTGTTCGTTGATGAAGAACT 60.334 40.000 8.67 0.00 43.19 3.01
6782 7146 3.704061 AGAGGTCAGAGGAGATTGTAAGC 59.296 47.826 0.00 0.00 0.00 3.09
6806 7170 2.730672 GCACCTCGCGTAACTGCAG 61.731 63.158 13.48 13.48 34.15 4.41
6850 7214 4.090761 TGACAAAGATTTCAGAGTGCCT 57.909 40.909 0.00 0.00 0.00 4.75
6917 7328 6.249260 CGTTTTCAGACAGTCAGAAAAGTTTG 59.751 38.462 26.03 15.99 40.74 2.93
6933 7344 3.066203 GGGAAGCAGAAAACGTTTTCAGA 59.934 43.478 40.11 0.00 46.81 3.27
7005 7417 1.522092 CTCCATGTAGAAGCGGGCA 59.478 57.895 0.00 0.00 0.00 5.36
7131 7543 1.040646 TCTTCACGCTGTCCTTGAGT 58.959 50.000 0.00 0.00 0.00 3.41
7233 7661 4.209307 TGTCAGTACAACAACACCTTCA 57.791 40.909 0.00 0.00 30.91 3.02
7264 7692 1.167851 CCACAACAGGGCACATAGTG 58.832 55.000 0.00 0.00 36.51 2.74
7419 7847 2.566833 ACATAGGCAAGTTCAGTGCA 57.433 45.000 0.00 0.00 44.07 4.57
7420 7848 5.567138 ATTAACATAGGCAAGTTCAGTGC 57.433 39.130 0.00 0.00 41.45 4.40
7421 7849 6.308766 GCAAATTAACATAGGCAAGTTCAGTG 59.691 38.462 0.00 0.00 0.00 3.66
7422 7850 6.389906 GCAAATTAACATAGGCAAGTTCAGT 58.610 36.000 0.00 0.00 0.00 3.41
7435 7863 9.165035 CCACATGAATAAAAGGCAAATTAACAT 57.835 29.630 0.00 0.00 0.00 2.71
7502 7930 6.209192 ACCAAGCAAACACATTCTGAATATCA 59.791 34.615 1.98 0.00 0.00 2.15
7518 7946 3.118261 TGGGCAAATGTTAACCAAGCAAA 60.118 39.130 2.48 0.00 0.00 3.68
7583 8011 1.769026 TGGTGGCAGTTGCAAGTAAA 58.231 45.000 6.43 0.00 44.36 2.01
7667 8096 4.158394 TGCTTCTTTGTGTTGCTTTTCTCT 59.842 37.500 0.00 0.00 0.00 3.10
7668 8097 4.423732 TGCTTCTTTGTGTTGCTTTTCTC 58.576 39.130 0.00 0.00 0.00 2.87
7669 8098 4.158394 TCTGCTTCTTTGTGTTGCTTTTCT 59.842 37.500 0.00 0.00 0.00 2.52
7675 8106 3.366719 GAGTTCTGCTTCTTTGTGTTGC 58.633 45.455 0.00 0.00 0.00 4.17
7693 8141 4.526970 TGAGTTCTGCTTTTCTTTGGAGT 58.473 39.130 0.00 0.00 0.00 3.85
7694 8142 5.505173 TTGAGTTCTGCTTTTCTTTGGAG 57.495 39.130 0.00 0.00 0.00 3.86
7695 8143 5.913137 TTTGAGTTCTGCTTTTCTTTGGA 57.087 34.783 0.00 0.00 0.00 3.53
7696 8144 6.966435 TTTTTGAGTTCTGCTTTTCTTTGG 57.034 33.333 0.00 0.00 0.00 3.28
7790 8242 7.587037 ATGTTGATTTGGGTCATAGTTATGG 57.413 36.000 0.00 0.00 34.50 2.74
7820 8284 5.220662 CGGCGAAGTAGAATGATTGTTTGAT 60.221 40.000 0.00 0.00 0.00 2.57
7841 8326 2.464157 AGGAATTCATAGCTAGCGGC 57.536 50.000 9.55 0.00 42.19 6.53
7842 8327 4.381079 GGAGTAGGAATTCATAGCTAGCGG 60.381 50.000 9.55 3.30 0.00 5.52
7843 8328 4.461081 AGGAGTAGGAATTCATAGCTAGCG 59.539 45.833 9.55 0.00 0.00 4.26
7844 8329 5.719173 CAGGAGTAGGAATTCATAGCTAGC 58.281 45.833 6.62 6.62 0.00 3.42
7845 8330 5.621104 CGCAGGAGTAGGAATTCATAGCTAG 60.621 48.000 7.93 0.00 0.00 3.42
7846 8331 4.218635 CGCAGGAGTAGGAATTCATAGCTA 59.781 45.833 7.93 0.00 0.00 3.32
7847 8332 3.006323 CGCAGGAGTAGGAATTCATAGCT 59.994 47.826 7.93 5.03 0.00 3.32
7848 8333 3.321497 CGCAGGAGTAGGAATTCATAGC 58.679 50.000 7.93 3.22 0.00 2.97
7887 8374 1.549203 TCAGCCTTTTGGATCAAGCC 58.451 50.000 0.00 0.00 44.07 4.35
8034 8533 7.390823 TGTGCTTGTTTTGTATCACCTAGATA 58.609 34.615 0.00 0.00 38.19 1.98
8035 8534 6.237901 TGTGCTTGTTTTGTATCACCTAGAT 58.762 36.000 0.00 0.00 40.86 1.98
8036 8535 5.616270 TGTGCTTGTTTTGTATCACCTAGA 58.384 37.500 0.00 0.00 0.00 2.43
8037 8536 5.940192 TGTGCTTGTTTTGTATCACCTAG 57.060 39.130 0.00 0.00 0.00 3.02
8038 8537 5.277586 CGTTGTGCTTGTTTTGTATCACCTA 60.278 40.000 0.00 0.00 0.00 3.08
8039 8538 4.497340 CGTTGTGCTTGTTTTGTATCACCT 60.497 41.667 0.00 0.00 0.00 4.00
8040 8539 3.728718 CGTTGTGCTTGTTTTGTATCACC 59.271 43.478 0.00 0.00 0.00 4.02
8041 8540 3.179599 GCGTTGTGCTTGTTTTGTATCAC 59.820 43.478 0.00 0.00 41.73 3.06
8042 8541 3.181496 TGCGTTGTGCTTGTTTTGTATCA 60.181 39.130 0.00 0.00 46.63 2.15
8043 8542 3.367607 TGCGTTGTGCTTGTTTTGTATC 58.632 40.909 0.00 0.00 46.63 2.24
8044 8543 3.428746 TGCGTTGTGCTTGTTTTGTAT 57.571 38.095 0.00 0.00 46.63 2.29
8051 8550 1.649390 TTCGGTTGCGTTGTGCTTGT 61.649 50.000 0.00 0.00 46.63 3.16
8112 8611 6.049790 GTGTTTCCTAACATAGAGACCATCC 58.950 44.000 0.00 0.00 45.41 3.51
8123 8622 4.848357 AGCTGCTATGTGTTTCCTAACAT 58.152 39.130 0.00 0.00 45.41 2.71
8130 8629 4.455877 AGTTGGTTAGCTGCTATGTGTTTC 59.544 41.667 10.64 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.