Multiple sequence alignment - TraesCS7D01G552700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G552700 chr7D 100.000 4523 0 0 1 4523 635578980 635583502 0.000000e+00 8353.0
1 TraesCS7D01G552700 chr7D 100.000 154 0 0 5126 5279 635584105 635584258 8.650000e-73 285.0
2 TraesCS7D01G552700 chr7B 92.193 4432 181 70 182 4523 740042246 740037890 0.000000e+00 6115.0
3 TraesCS7D01G552700 chr7B 98.052 154 2 1 5126 5278 740037776 740037623 3.130000e-67 267.0
4 TraesCS7D01G552700 chr7A 96.206 3585 106 14 878 4451 730434378 730430813 0.000000e+00 5840.0
5 TraesCS7D01G552700 chr7A 81.985 544 41 18 107 635 730435007 730434506 4.920000e-110 409.0
6 TraesCS7D01G552700 chr7A 98.693 153 2 0 5126 5278 730430673 730430521 6.740000e-69 272.0
7 TraesCS7D01G552700 chr7A 96.491 57 2 0 55 111 730435090 730435034 1.570000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G552700 chr7D 635578980 635584258 5278 False 4319.000 8353 100.00000 1 5279 2 chr7D.!!$F1 5278
1 TraesCS7D01G552700 chr7B 740037623 740042246 4623 True 3191.000 6115 95.12250 182 5278 2 chr7B.!!$R1 5096
2 TraesCS7D01G552700 chr7A 730430521 730435090 4569 True 1654.075 5840 93.34375 55 5278 4 chr7A.!!$R1 5223

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 500 0.112412 TCCCTCTTTTGGCTGGGTTC 59.888 55.0 0.00 0.00 40.48 3.62 F
408 502 0.113190 CCTCTTTTGGCTGGGTTCCT 59.887 55.0 0.00 0.00 0.00 3.36 F
933 1065 0.249531 TTATTATTCCCGCGCGCTGA 60.250 50.0 30.48 22.14 0.00 4.26 F
2517 2672 0.102481 TACGATCTCTTGCCCGCTTC 59.898 55.0 0.00 0.00 0.00 3.86 F
2584 2739 0.107508 CATGGGCTCGTTGTCCTCAT 60.108 55.0 3.82 0.00 42.07 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1633 1.004044 AGCTCCTGGACATTTCACTGG 59.996 52.381 0.00 0.0 0.00 4.00 R
2326 2481 1.057847 CACGAGATCAAAGCGTCGAAC 59.942 52.381 6.78 0.0 35.90 3.95 R
2584 2739 0.036732 AGATGCCGAGGCTTTGACAA 59.963 50.000 15.75 0.0 42.51 3.18 R
4091 4246 0.174389 ACACTGCAGCTCGAATCGAT 59.826 50.000 15.27 0.0 34.61 3.59 R
4487 4646 0.622665 CCTCAGGCCTCATCAAACCT 59.377 55.000 0.00 0.0 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.950828 CTCTAGCCAGGTTGCATCTG 58.049 55.000 9.77 9.77 0.00 2.90
20 21 1.483827 CTCTAGCCAGGTTGCATCTGA 59.516 52.381 16.30 0.00 34.36 3.27
21 22 2.104451 CTCTAGCCAGGTTGCATCTGAT 59.896 50.000 16.30 8.88 34.36 2.90
22 23 2.158856 TCTAGCCAGGTTGCATCTGATG 60.159 50.000 13.26 13.26 34.36 3.07
23 24 0.330604 AGCCAGGTTGCATCTGATGT 59.669 50.000 18.19 0.00 34.36 3.06
24 25 0.737219 GCCAGGTTGCATCTGATGTC 59.263 55.000 18.19 11.30 34.36 3.06
25 26 1.012086 CCAGGTTGCATCTGATGTCG 58.988 55.000 18.19 2.31 34.36 4.35
26 27 1.405933 CCAGGTTGCATCTGATGTCGA 60.406 52.381 18.19 8.35 34.36 4.20
27 28 1.662629 CAGGTTGCATCTGATGTCGAC 59.337 52.381 18.19 9.11 34.36 4.20
28 29 1.276138 AGGTTGCATCTGATGTCGACA 59.724 47.619 22.48 22.48 0.00 4.35
29 30 2.093288 AGGTTGCATCTGATGTCGACAT 60.093 45.455 30.37 30.37 39.70 3.06
30 31 3.132824 AGGTTGCATCTGATGTCGACATA 59.867 43.478 30.04 16.10 36.57 2.29
31 32 3.871006 GGTTGCATCTGATGTCGACATAA 59.129 43.478 30.04 22.49 36.57 1.90
32 33 4.332543 GGTTGCATCTGATGTCGACATAAA 59.667 41.667 30.04 19.85 36.57 1.40
33 34 5.008019 GGTTGCATCTGATGTCGACATAAAT 59.992 40.000 30.04 19.60 36.57 1.40
34 35 6.458751 GGTTGCATCTGATGTCGACATAAATT 60.459 38.462 30.04 9.90 36.57 1.82
35 36 6.682423 TGCATCTGATGTCGACATAAATTT 57.318 33.333 30.04 9.08 36.57 1.82
36 37 6.488817 TGCATCTGATGTCGACATAAATTTG 58.511 36.000 30.04 22.16 36.57 2.32
37 38 6.093909 TGCATCTGATGTCGACATAAATTTGT 59.906 34.615 30.04 7.44 36.57 2.83
38 39 6.968904 GCATCTGATGTCGACATAAATTTGTT 59.031 34.615 30.04 6.63 36.57 2.83
39 40 7.485913 GCATCTGATGTCGACATAAATTTGTTT 59.514 33.333 30.04 5.81 36.57 2.83
40 41 9.345517 CATCTGATGTCGACATAAATTTGTTTT 57.654 29.630 30.04 5.23 36.57 2.43
41 42 9.912634 ATCTGATGTCGACATAAATTTGTTTTT 57.087 25.926 30.04 5.01 36.57 1.94
42 43 9.393249 TCTGATGTCGACATAAATTTGTTTTTC 57.607 29.630 30.04 14.54 36.57 2.29
43 44 8.514136 TGATGTCGACATAAATTTGTTTTTCC 57.486 30.769 30.04 13.14 36.57 3.13
44 45 8.138074 TGATGTCGACATAAATTTGTTTTTCCA 58.862 29.630 30.04 15.47 36.57 3.53
45 46 9.139174 GATGTCGACATAAATTTGTTTTTCCAT 57.861 29.630 30.04 3.01 36.57 3.41
46 47 8.291888 TGTCGACATAAATTTGTTTTTCCATG 57.708 30.769 15.76 0.00 0.00 3.66
47 48 7.095857 TGTCGACATAAATTTGTTTTTCCATGC 60.096 33.333 15.76 0.00 0.00 4.06
48 49 6.367422 TCGACATAAATTTGTTTTTCCATGCC 59.633 34.615 0.00 0.00 0.00 4.40
49 50 6.146837 CGACATAAATTTGTTTTTCCATGCCA 59.853 34.615 0.00 0.00 0.00 4.92
50 51 7.148440 CGACATAAATTTGTTTTTCCATGCCAT 60.148 33.333 0.00 0.00 0.00 4.40
51 52 7.818642 ACATAAATTTGTTTTTCCATGCCATG 58.181 30.769 0.00 0.00 0.00 3.66
73 74 3.567164 GGATAGATGTTGCTGTCCATTGG 59.433 47.826 0.00 0.00 43.40 3.16
77 78 1.774110 TGTTGCTGTCCATTGGTGTT 58.226 45.000 1.86 0.00 0.00 3.32
111 112 0.468771 ATAGCCTGCCCAATTCTGCC 60.469 55.000 0.00 0.00 0.00 4.85
112 113 2.572333 TAGCCTGCCCAATTCTGCCC 62.572 60.000 0.00 0.00 0.00 5.36
113 114 2.761213 CCTGCCCAATTCTGCCCC 60.761 66.667 0.00 0.00 0.00 5.80
114 115 2.361771 CTGCCCAATTCTGCCCCT 59.638 61.111 0.00 0.00 0.00 4.79
122 154 1.004044 CAATTCTGCCCCTCACACTCT 59.996 52.381 0.00 0.00 0.00 3.24
124 156 0.397941 TTCTGCCCCTCACACTCTTG 59.602 55.000 0.00 0.00 0.00 3.02
125 157 0.764369 TCTGCCCCTCACACTCTTGT 60.764 55.000 0.00 0.00 35.84 3.16
139 171 5.819991 ACACTCTTGTGATATCCAACCAAT 58.180 37.500 0.00 0.00 46.55 3.16
148 180 0.680921 ATCCAACCAATGTCCCTGCG 60.681 55.000 0.00 0.00 0.00 5.18
169 201 3.560989 CTCAGGAGCCTCCCATCC 58.439 66.667 7.26 0.00 37.19 3.51
175 207 2.697263 AGCCTCCCATCCATGGCA 60.697 61.111 6.96 0.00 46.70 4.92
180 212 2.227494 CTCCCATCCATGGCACCCAA 62.227 60.000 6.96 0.00 46.70 4.12
195 227 2.030007 CACCCAATTTGTACCACAGCAG 60.030 50.000 0.00 0.00 0.00 4.24
209 241 3.334054 GCAGTCTTCCAGGGGCCT 61.334 66.667 0.84 0.00 0.00 5.19
243 276 2.030805 GGAGATGTGACAGGTTGTTTGC 60.031 50.000 0.00 0.00 0.00 3.68
248 281 2.441164 ACAGGTTGTTTGCGCCCA 60.441 55.556 4.18 0.00 0.00 5.36
261 294 4.147587 GCCCATCCATGGCCCTGT 62.148 66.667 6.96 0.00 46.70 4.00
262 295 2.691732 CCCATCCATGGCCCTGTT 59.308 61.111 6.96 0.00 46.70 3.16
263 296 1.759299 CCCATCCATGGCCCTGTTG 60.759 63.158 6.96 4.51 46.70 3.33
293 348 2.363683 CCACCAGAAGAAGAATGGAGC 58.636 52.381 0.00 0.00 37.54 4.70
296 351 3.688673 CACCAGAAGAAGAATGGAGCTTC 59.311 47.826 0.00 0.00 41.53 3.86
337 400 1.379642 GGATTTTGAGCTGCGAGGGG 61.380 60.000 0.00 0.00 0.00 4.79
364 427 0.546598 ATTAGGGGGAGGAAAGCGTG 59.453 55.000 0.00 0.00 0.00 5.34
406 500 0.112412 TCCCTCTTTTGGCTGGGTTC 59.888 55.000 0.00 0.00 40.48 3.62
407 501 0.900182 CCCTCTTTTGGCTGGGTTCC 60.900 60.000 0.00 0.00 35.13 3.62
408 502 0.113190 CCTCTTTTGGCTGGGTTCCT 59.887 55.000 0.00 0.00 0.00 3.36
409 503 1.481242 CCTCTTTTGGCTGGGTTCCTT 60.481 52.381 0.00 0.00 0.00 3.36
495 593 4.162690 CCCCGCCTTCCTCTTCCG 62.163 72.222 0.00 0.00 0.00 4.30
496 594 4.840005 CCCGCCTTCCTCTTCCGC 62.840 72.222 0.00 0.00 0.00 5.54
497 595 4.840005 CCGCCTTCCTCTTCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
498 596 3.775654 CGCCTTCCTCTTCCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
524 622 3.497584 CCTCTTGCTCCAATAATCCTCCC 60.498 52.174 0.00 0.00 0.00 4.30
541 643 2.438763 CTCCCATCCTCAGCAATCTTCT 59.561 50.000 0.00 0.00 0.00 2.85
546 648 4.335874 CCATCCTCAGCAATCTTCTTCAAG 59.664 45.833 0.00 0.00 0.00 3.02
558 660 7.498570 GCAATCTTCTTCAAGAGGTAATCATCT 59.501 37.037 0.00 0.00 42.13 2.90
572 674 9.941325 GAGGTAATCATCTATCAATCAATCAGT 57.059 33.333 0.00 0.00 0.00 3.41
573 675 9.941325 AGGTAATCATCTATCAATCAATCAGTC 57.059 33.333 0.00 0.00 0.00 3.51
574 676 9.716531 GGTAATCATCTATCAATCAATCAGTCA 57.283 33.333 0.00 0.00 0.00 3.41
578 680 8.843885 TCATCTATCAATCAATCAGTCAATCC 57.156 34.615 0.00 0.00 0.00 3.01
579 681 8.434392 TCATCTATCAATCAATCAGTCAATCCA 58.566 33.333 0.00 0.00 0.00 3.41
580 682 9.232473 CATCTATCAATCAATCAGTCAATCCAT 57.768 33.333 0.00 0.00 0.00 3.41
610 720 1.807142 GAGGAGCAGTTTGCCAGTTAC 59.193 52.381 0.00 0.00 46.52 2.50
613 723 2.030805 GGAGCAGTTTGCCAGTTACTTG 60.031 50.000 0.00 0.00 46.52 3.16
635 745 1.002430 TGTGCTTAGTTCCAGCTCCTG 59.998 52.381 0.00 0.00 38.19 3.86
637 747 2.093235 GTGCTTAGTTCCAGCTCCTGAT 60.093 50.000 0.00 0.00 38.19 2.90
638 748 2.169352 TGCTTAGTTCCAGCTCCTGATC 59.831 50.000 0.00 0.00 38.19 2.92
639 749 2.433970 GCTTAGTTCCAGCTCCTGATCT 59.566 50.000 0.00 0.00 34.15 2.75
640 750 3.740764 GCTTAGTTCCAGCTCCTGATCTG 60.741 52.174 0.00 0.00 34.15 2.90
641 751 2.244486 AGTTCCAGCTCCTGATCTGA 57.756 50.000 0.38 0.00 32.44 3.27
648 780 4.087907 CCAGCTCCTGATCTGATAGATGA 58.912 47.826 16.31 0.00 34.53 2.92
669 801 9.671279 AGATGAATTTTGTTCTTTCCTTTTTGT 57.329 25.926 0.00 0.00 0.00 2.83
672 804 8.439286 TGAATTTTGTTCTTTCCTTTTTGTTCG 58.561 29.630 0.00 0.00 0.00 3.95
673 805 5.771602 TTTGTTCTTTCCTTTTTGTTCGC 57.228 34.783 0.00 0.00 0.00 4.70
674 806 4.442375 TGTTCTTTCCTTTTTGTTCGCA 57.558 36.364 0.00 0.00 0.00 5.10
675 807 5.004922 TGTTCTTTCCTTTTTGTTCGCAT 57.995 34.783 0.00 0.00 0.00 4.73
676 808 4.803088 TGTTCTTTCCTTTTTGTTCGCATG 59.197 37.500 0.00 0.00 0.00 4.06
677 809 4.647424 TCTTTCCTTTTTGTTCGCATGT 57.353 36.364 0.00 0.00 0.00 3.21
678 810 5.004922 TCTTTCCTTTTTGTTCGCATGTT 57.995 34.783 0.00 0.00 0.00 2.71
679 811 4.803088 TCTTTCCTTTTTGTTCGCATGTTG 59.197 37.500 0.00 0.00 0.00 3.33
680 812 4.377839 TTCCTTTTTGTTCGCATGTTGA 57.622 36.364 0.00 0.00 0.00 3.18
681 813 4.582701 TCCTTTTTGTTCGCATGTTGAT 57.417 36.364 0.00 0.00 0.00 2.57
682 814 4.942852 TCCTTTTTGTTCGCATGTTGATT 58.057 34.783 0.00 0.00 0.00 2.57
686 818 0.801872 TGTTCGCATGTTGATTCCGG 59.198 50.000 0.00 0.00 0.00 5.14
688 820 0.801872 TTCGCATGTTGATTCCGGTG 59.198 50.000 0.00 0.00 0.00 4.94
692 824 2.611751 CGCATGTTGATTCCGGTGATTA 59.388 45.455 0.00 0.00 0.00 1.75
696 828 5.572211 CATGTTGATTCCGGTGATTAGTTG 58.428 41.667 0.00 0.00 0.00 3.16
702 834 1.820519 TCCGGTGATTAGTTGCGTAGT 59.179 47.619 0.00 0.00 0.00 2.73
716 848 6.043411 AGTTGCGTAGTAATTGAAGAGGATC 58.957 40.000 0.00 0.00 32.83 3.36
718 850 6.199342 GTTGCGTAGTAATTGAAGAGGATCTC 59.801 42.308 0.00 0.00 38.78 2.75
719 851 8.629491 GTTGCGTAGTAATTGAAGAGGATCTCC 61.629 44.444 0.00 0.00 38.78 3.71
733 865 0.835941 ATCTCCCTGTGTCCAGATGC 59.164 55.000 0.00 0.00 41.50 3.91
741 873 3.629398 CCTGTGTCCAGATGCTAATTTCC 59.371 47.826 0.00 0.00 41.50 3.13
752 884 2.227865 TGCTAATTTCCGTTTCCTGTGC 59.772 45.455 0.00 0.00 0.00 4.57
758 890 3.726517 CGTTTCCTGTGCCGGCTG 61.727 66.667 29.70 17.20 0.00 4.85
798 930 5.298276 TCGAATCGAAATAAATGGGGGAAAG 59.702 40.000 1.57 0.00 31.06 2.62
801 933 7.470009 CGAATCGAAATAAATGGGGGAAAGAAT 60.470 37.037 0.00 0.00 0.00 2.40
803 935 6.431722 TCGAAATAAATGGGGGAAAGAATCT 58.568 36.000 0.00 0.00 0.00 2.40
806 938 7.255277 CGAAATAAATGGGGGAAAGAATCTCTC 60.255 40.741 0.00 0.00 0.00 3.20
807 939 6.855375 ATAAATGGGGGAAAGAATCTCTCT 57.145 37.500 0.00 0.00 35.13 3.10
808 940 5.542848 AAATGGGGGAAAGAATCTCTCTT 57.457 39.130 0.00 0.00 46.92 2.85
858 990 6.906157 AAAGGAAAGAATCTCTGCAAATCA 57.094 33.333 0.00 0.00 0.00 2.57
860 992 7.477945 AAGGAAAGAATCTCTGCAAATCAAT 57.522 32.000 0.00 0.00 0.00 2.57
861 993 7.098074 AGGAAAGAATCTCTGCAAATCAATC 57.902 36.000 0.00 0.00 0.00 2.67
862 994 5.970023 GGAAAGAATCTCTGCAAATCAATCG 59.030 40.000 0.00 0.00 0.00 3.34
864 996 6.939132 AAGAATCTCTGCAAATCAATCGAT 57.061 33.333 0.00 0.00 0.00 3.59
866 998 8.442632 AAGAATCTCTGCAAATCAATCGATTA 57.557 30.769 10.97 0.10 41.12 1.75
867 999 8.618702 AGAATCTCTGCAAATCAATCGATTAT 57.381 30.769 10.97 2.57 41.12 1.28
868 1000 8.719648 AGAATCTCTGCAAATCAATCGATTATC 58.280 33.333 10.97 0.00 41.12 1.75
870 1002 5.406477 TCTCTGCAAATCAATCGATTATCCG 59.594 40.000 10.97 0.00 41.12 4.18
871 1003 5.056480 TCTGCAAATCAATCGATTATCCGT 58.944 37.500 10.97 0.00 41.12 4.69
872 1004 5.050159 TCTGCAAATCAATCGATTATCCGTG 60.050 40.000 10.97 6.94 41.12 4.94
873 1005 3.908382 GCAAATCAATCGATTATCCGTGC 59.092 43.478 10.97 12.69 41.12 5.34
874 1006 4.554526 GCAAATCAATCGATTATCCGTGCA 60.555 41.667 10.97 0.00 41.12 4.57
875 1007 5.692814 CAAATCAATCGATTATCCGTGCAT 58.307 37.500 10.97 0.00 41.12 3.96
876 1008 5.536554 AATCAATCGATTATCCGTGCATC 57.463 39.130 10.97 0.00 40.16 3.91
882 1014 4.888917 TCGATTATCCGTGCATCCAATTA 58.111 39.130 0.00 0.00 0.00 1.40
885 1017 1.609208 ATCCGTGCATCCAATTAGCC 58.391 50.000 0.00 0.00 0.00 3.93
888 1020 1.785041 CGTGCATCCAATTAGCCCCG 61.785 60.000 0.00 0.00 0.00 5.73
900 1032 2.354074 TAGCCCCGTAATCGCCGTTC 62.354 60.000 0.00 0.00 35.54 3.95
902 1034 1.227438 CCCCGTAATCGCCGTTCAT 60.227 57.895 0.00 0.00 35.54 2.57
928 1060 4.231718 TCCAATTTTATTATTCCCGCGC 57.768 40.909 0.00 0.00 0.00 6.86
933 1065 0.249531 TTATTATTCCCGCGCGCTGA 60.250 50.000 30.48 22.14 0.00 4.26
934 1066 0.942410 TATTATTCCCGCGCGCTGAC 60.942 55.000 30.48 0.00 0.00 3.51
1236 1385 2.430921 GAGGTGGACGACGTGCTG 60.431 66.667 20.39 0.00 0.00 4.41
1478 1633 0.681243 GCCAGGAGGGATTGGTTCAC 60.681 60.000 0.00 0.00 40.01 3.18
1671 1826 1.270358 GCCAGGGAGATATTCACCGAC 60.270 57.143 0.00 0.00 0.00 4.79
1803 1958 2.289133 GGACACAGAGAACAAGGAGGAC 60.289 54.545 0.00 0.00 0.00 3.85
2030 2185 2.358615 CAGCTGGGCGTTACTGCA 60.359 61.111 5.57 0.00 35.55 4.41
2174 2329 2.817396 GAGAGGCACGAGCAAGGC 60.817 66.667 7.26 0.00 44.61 4.35
2326 2481 1.987855 TACCCAGAAGACTGCCCCG 60.988 63.158 0.00 0.00 42.25 5.73
2331 2486 1.906824 AGAAGACTGCCCCGTTCGA 60.907 57.895 0.00 0.00 0.00 3.71
2427 2582 5.358442 GTCTGCTGAAGAGTACTATCTGGAA 59.642 44.000 0.00 0.00 34.84 3.53
2502 2657 3.570125 GGATGACACATGATCTCCTACGA 59.430 47.826 0.00 0.00 0.00 3.43
2508 2663 5.136828 ACACATGATCTCCTACGATCTCTT 58.863 41.667 0.00 0.00 40.32 2.85
2517 2672 0.102481 TACGATCTCTTGCCCGCTTC 59.898 55.000 0.00 0.00 0.00 3.86
2584 2739 0.107508 CATGGGCTCGTTGTCCTCAT 60.108 55.000 3.82 0.00 42.07 2.90
2755 2910 1.146041 TGCTTGCGTGTCTTGGACT 59.854 52.632 0.00 0.00 33.15 3.85
2991 3146 1.068741 GGAACCTCCCTACGCTATGTG 59.931 57.143 0.00 0.00 0.00 3.21
3012 3167 1.681264 CCAAAAGGTGTGGGTGAACTC 59.319 52.381 0.00 0.00 32.03 3.01
3150 3305 3.041946 ACTTGATAGGGCTACTTCTGGG 58.958 50.000 0.00 0.00 0.00 4.45
3240 3395 8.774890 TTGAAGAAGAAGAGAATGATGAAGAG 57.225 34.615 0.00 0.00 0.00 2.85
3281 3436 3.187432 GCAGAGAAAGAAGAAAAGGACGG 59.813 47.826 0.00 0.00 0.00 4.79
3372 3527 1.451387 CACCCCACCCAATAGCGTC 60.451 63.158 0.00 0.00 0.00 5.19
3404 3559 5.308497 TGGTAATCAAGAACTACCAAGGTCA 59.692 40.000 10.37 0.00 42.38 4.02
3414 3569 3.881089 ACTACCAAGGTCAAAAGTTTCCG 59.119 43.478 0.00 0.00 0.00 4.30
3507 3662 3.933048 ATGCACCACTCTGCCTGCC 62.933 63.158 0.00 0.00 36.21 4.85
3534 3689 1.875576 CGCCTGAAACAGCTCAAGTCT 60.876 52.381 0.00 0.00 0.00 3.24
3628 3783 2.305009 CCATCTCATTCCCCAAGCTTC 58.695 52.381 0.00 0.00 0.00 3.86
3705 3860 2.362120 AGCCAGACATTGCTGCCC 60.362 61.111 0.00 0.00 36.23 5.36
3756 3911 1.734465 CCTAAACTCAAAGCTCTGCCG 59.266 52.381 0.00 0.00 0.00 5.69
3795 3950 0.597637 CTCTGTGCGACCTTCGTGTT 60.598 55.000 0.00 0.00 42.81 3.32
4041 4196 1.590238 GTCATCTTCTGGAACATCGCG 59.410 52.381 0.00 0.00 38.20 5.87
4206 4361 1.081242 CACAAGCACCGATGGCAAC 60.081 57.895 0.00 0.00 0.00 4.17
4346 4504 9.829507 AAGTTGTCATCTTATCCTTAATCTCTG 57.170 33.333 0.00 0.00 0.00 3.35
4487 4646 5.581605 AGTCGTCGTGTTGTTACTAGAAAA 58.418 37.500 0.00 0.00 0.00 2.29
4516 4675 2.292521 TGAGGCCTGAGGAATGAGTACT 60.293 50.000 12.00 0.00 0.00 2.73
5278 5438 4.617328 CAAACTTATGTGCGCAAATTTCG 58.383 39.130 20.15 9.89 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.483827 TCAGATGCAACCTGGCTAGAG 59.516 52.381 16.37 0.00 32.73 2.43
2 3 2.219458 CATCAGATGCAACCTGGCTAG 58.781 52.381 16.37 0.00 32.73 3.42
3 4 1.561076 ACATCAGATGCAACCTGGCTA 59.439 47.619 10.59 1.93 32.73 3.93
5 6 0.737219 GACATCAGATGCAACCTGGC 59.263 55.000 10.59 0.22 32.73 4.85
6 7 1.012086 CGACATCAGATGCAACCTGG 58.988 55.000 10.59 0.00 32.73 4.45
7 8 1.662629 GTCGACATCAGATGCAACCTG 59.337 52.381 11.55 11.87 0.00 4.00
8 9 1.276138 TGTCGACATCAGATGCAACCT 59.724 47.619 15.76 0.00 0.00 3.50
9 10 1.725641 TGTCGACATCAGATGCAACC 58.274 50.000 15.76 0.00 0.00 3.77
10 11 5.469373 TTTATGTCGACATCAGATGCAAC 57.531 39.130 33.11 6.85 37.76 4.17
11 12 6.682423 AATTTATGTCGACATCAGATGCAA 57.318 33.333 33.11 17.66 37.76 4.08
12 13 6.093909 ACAAATTTATGTCGACATCAGATGCA 59.906 34.615 33.11 12.46 37.76 3.96
13 14 6.489675 ACAAATTTATGTCGACATCAGATGC 58.510 36.000 33.11 2.81 37.76 3.91
14 15 8.900511 AAACAAATTTATGTCGACATCAGATG 57.099 30.769 33.11 25.31 37.76 2.90
15 16 9.912634 AAAAACAAATTTATGTCGACATCAGAT 57.087 25.926 33.11 21.29 37.76 2.90
16 17 9.393249 GAAAAACAAATTTATGTCGACATCAGA 57.607 29.630 33.11 20.09 37.76 3.27
17 18 8.638565 GGAAAAACAAATTTATGTCGACATCAG 58.361 33.333 33.11 18.83 37.76 2.90
18 19 8.138074 TGGAAAAACAAATTTATGTCGACATCA 58.862 29.630 33.11 21.02 37.76 3.07
19 20 8.514136 TGGAAAAACAAATTTATGTCGACATC 57.486 30.769 33.11 15.37 37.76 3.06
20 21 8.924691 CATGGAAAAACAAATTTATGTCGACAT 58.075 29.630 31.93 31.93 40.22 3.06
21 22 7.095857 GCATGGAAAAACAAATTTATGTCGACA 60.096 33.333 22.48 22.48 31.81 4.35
22 23 7.226772 GCATGGAAAAACAAATTTATGTCGAC 58.773 34.615 9.11 9.11 31.81 4.20
23 24 6.367422 GGCATGGAAAAACAAATTTATGTCGA 59.633 34.615 0.00 0.00 31.81 4.20
24 25 6.146837 TGGCATGGAAAAACAAATTTATGTCG 59.853 34.615 0.00 0.00 31.81 4.35
25 26 7.432350 TGGCATGGAAAAACAAATTTATGTC 57.568 32.000 0.00 0.00 31.81 3.06
26 27 7.818642 CATGGCATGGAAAAACAAATTTATGT 58.181 30.769 19.80 0.00 34.24 2.29
43 44 3.057526 CAGCAACATCTATCCATGGCATG 60.058 47.826 20.56 20.56 0.00 4.06
44 45 3.154710 CAGCAACATCTATCCATGGCAT 58.845 45.455 6.96 4.38 0.00 4.40
45 46 2.092267 ACAGCAACATCTATCCATGGCA 60.092 45.455 6.96 0.00 0.00 4.92
46 47 2.551459 GACAGCAACATCTATCCATGGC 59.449 50.000 6.96 0.00 0.00 4.40
47 48 3.144506 GGACAGCAACATCTATCCATGG 58.855 50.000 4.97 4.97 30.15 3.66
48 49 3.812262 TGGACAGCAACATCTATCCATG 58.188 45.455 0.00 0.00 34.92 3.66
49 50 4.719026 ATGGACAGCAACATCTATCCAT 57.281 40.909 0.00 0.00 43.06 3.41
50 51 4.201657 CAATGGACAGCAACATCTATCCA 58.798 43.478 0.00 0.00 43.14 3.41
51 52 3.567164 CCAATGGACAGCAACATCTATCC 59.433 47.826 0.00 0.00 30.40 2.59
52 53 4.036027 CACCAATGGACAGCAACATCTATC 59.964 45.833 6.16 0.00 0.00 2.08
53 54 3.949754 CACCAATGGACAGCAACATCTAT 59.050 43.478 6.16 0.00 0.00 1.98
73 74 7.698130 CAGGCTATTTTTGTAATCAGCTAACAC 59.302 37.037 0.00 0.00 0.00 3.32
77 78 5.299279 GGCAGGCTATTTTTGTAATCAGCTA 59.701 40.000 0.00 0.00 0.00 3.32
122 154 4.017591 AGGGACATTGGTTGGATATCACAA 60.018 41.667 4.83 3.97 0.00 3.33
124 156 3.885297 CAGGGACATTGGTTGGATATCAC 59.115 47.826 4.83 0.00 0.00 3.06
125 157 3.688126 GCAGGGACATTGGTTGGATATCA 60.688 47.826 4.83 0.00 0.00 2.15
127 159 2.749466 CGCAGGGACATTGGTTGGATAT 60.749 50.000 0.00 0.00 0.00 1.63
139 171 2.659016 CTGAGCTTCGCAGGGACA 59.341 61.111 0.00 0.00 0.00 4.02
156 188 2.842058 CCATGGATGGGAGGCTCC 59.158 66.667 25.80 25.80 44.31 4.70
166 198 1.955451 ACAAATTGGGTGCCATGGAT 58.045 45.000 18.40 0.00 31.53 3.41
167 199 2.175202 GTACAAATTGGGTGCCATGGA 58.825 47.619 18.40 0.00 31.53 3.41
168 200 1.206849 GGTACAAATTGGGTGCCATGG 59.793 52.381 7.63 7.63 40.32 3.66
169 201 1.898472 TGGTACAAATTGGGTGCCATG 59.102 47.619 13.87 0.00 44.51 3.66
175 207 2.238521 CTGCTGTGGTACAAATTGGGT 58.761 47.619 0.00 0.00 44.16 4.51
180 212 3.181445 TGGAAGACTGCTGTGGTACAAAT 60.181 43.478 0.00 0.00 44.16 2.32
209 241 1.648568 ACATCTCCCTTCTCTCCTCCA 59.351 52.381 0.00 0.00 0.00 3.86
248 281 0.114954 AACACAACAGGGCCATGGAT 59.885 50.000 23.35 7.30 0.00 3.41
261 294 0.621082 TCTGGTGGGTGACAACACAA 59.379 50.000 10.91 0.18 43.22 3.33
262 295 0.621082 TTCTGGTGGGTGACAACACA 59.379 50.000 10.91 0.00 43.22 3.72
263 296 1.134220 TCTTCTGGTGGGTGACAACAC 60.134 52.381 0.00 0.00 43.22 3.32
293 348 3.427368 CGATCCAGACAGACAGACAGAAG 60.427 52.174 0.00 0.00 0.00 2.85
296 351 1.133982 CCGATCCAGACAGACAGACAG 59.866 57.143 0.00 0.00 0.00 3.51
297 352 1.177401 CCGATCCAGACAGACAGACA 58.823 55.000 0.00 0.00 0.00 3.41
298 353 1.403679 CTCCGATCCAGACAGACAGAC 59.596 57.143 0.00 0.00 0.00 3.51
299 354 1.683319 CCTCCGATCCAGACAGACAGA 60.683 57.143 0.00 0.00 0.00 3.41
300 355 0.743688 CCTCCGATCCAGACAGACAG 59.256 60.000 0.00 0.00 0.00 3.51
337 400 2.488836 TCCTCCCCCTAATTTCTCCAC 58.511 52.381 0.00 0.00 0.00 4.02
364 427 1.884235 CGCCTCTAAATGGATCCACC 58.116 55.000 18.99 0.00 39.54 4.61
406 500 1.000396 CCTCCCTGCTTTCCCAAGG 60.000 63.158 0.00 0.00 0.00 3.61
407 501 1.000396 CCCTCCCTGCTTTCCCAAG 60.000 63.158 0.00 0.00 0.00 3.61
408 502 2.547595 CCCCTCCCTGCTTTCCCAA 61.548 63.158 0.00 0.00 0.00 4.12
409 503 2.941025 CCCCTCCCTGCTTTCCCA 60.941 66.667 0.00 0.00 0.00 4.37
495 593 1.557269 TTGGAGCAAGAGGAGGAGGC 61.557 60.000 0.00 0.00 0.00 4.70
496 594 1.211456 ATTGGAGCAAGAGGAGGAGG 58.789 55.000 0.00 0.00 0.00 4.30
497 595 4.504689 GGATTATTGGAGCAAGAGGAGGAG 60.505 50.000 0.00 0.00 0.00 3.69
498 596 3.392616 GGATTATTGGAGCAAGAGGAGGA 59.607 47.826 0.00 0.00 0.00 3.71
524 622 5.183969 TCTTGAAGAAGATTGCTGAGGATG 58.816 41.667 0.00 0.00 32.98 3.51
546 648 9.941325 ACTGATTGATTGATAGATGATTACCTC 57.059 33.333 0.00 0.00 0.00 3.85
558 660 7.519927 TGGATGGATTGACTGATTGATTGATA 58.480 34.615 0.00 0.00 0.00 2.15
569 671 4.383173 TCGATTGATGGATGGATTGACTG 58.617 43.478 0.00 0.00 0.00 3.51
570 672 4.504514 CCTCGATTGATGGATGGATTGACT 60.505 45.833 0.00 0.00 0.00 3.41
571 673 3.750130 CCTCGATTGATGGATGGATTGAC 59.250 47.826 0.00 0.00 0.00 3.18
572 674 3.647590 TCCTCGATTGATGGATGGATTGA 59.352 43.478 0.00 0.00 0.00 2.57
573 675 4.001652 CTCCTCGATTGATGGATGGATTG 58.998 47.826 0.00 0.00 0.00 2.67
574 676 3.558746 GCTCCTCGATTGATGGATGGATT 60.559 47.826 0.00 0.00 0.00 3.01
575 677 2.027377 GCTCCTCGATTGATGGATGGAT 60.027 50.000 0.00 0.00 0.00 3.41
576 678 1.345741 GCTCCTCGATTGATGGATGGA 59.654 52.381 0.00 0.00 0.00 3.41
577 679 1.071228 TGCTCCTCGATTGATGGATGG 59.929 52.381 0.00 0.00 0.00 3.51
578 680 2.224233 ACTGCTCCTCGATTGATGGATG 60.224 50.000 0.00 0.48 0.00 3.51
579 681 2.045524 ACTGCTCCTCGATTGATGGAT 58.954 47.619 0.00 0.00 0.00 3.41
580 682 1.489481 ACTGCTCCTCGATTGATGGA 58.511 50.000 0.00 0.00 0.00 3.41
610 720 2.880890 AGCTGGAACTAAGCACAACAAG 59.119 45.455 0.00 0.00 43.37 3.16
613 723 1.807142 GGAGCTGGAACTAAGCACAAC 59.193 52.381 0.00 0.00 43.37 3.32
637 747 9.745018 AGGAAAGAACAAAATTCATCTATCAGA 57.255 29.630 0.00 0.00 0.00 3.27
648 780 7.095017 TGCGAACAAAAAGGAAAGAACAAAATT 60.095 29.630 0.00 0.00 0.00 1.82
666 798 1.198867 CCGGAATCAACATGCGAACAA 59.801 47.619 0.00 0.00 33.04 2.83
667 799 0.801872 CCGGAATCAACATGCGAACA 59.198 50.000 0.00 0.00 33.04 3.18
668 800 0.802494 ACCGGAATCAACATGCGAAC 59.198 50.000 9.46 0.00 33.04 3.95
669 801 0.801872 CACCGGAATCAACATGCGAA 59.198 50.000 9.46 0.00 33.04 4.70
670 802 0.036858 TCACCGGAATCAACATGCGA 60.037 50.000 9.46 0.00 33.04 5.10
671 803 1.016627 ATCACCGGAATCAACATGCG 58.983 50.000 9.46 0.00 0.00 4.73
672 804 3.627577 ACTAATCACCGGAATCAACATGC 59.372 43.478 9.46 0.00 0.00 4.06
673 805 5.572211 CAACTAATCACCGGAATCAACATG 58.428 41.667 9.46 0.00 0.00 3.21
674 806 4.096382 GCAACTAATCACCGGAATCAACAT 59.904 41.667 9.46 0.00 0.00 2.71
675 807 3.438781 GCAACTAATCACCGGAATCAACA 59.561 43.478 9.46 0.00 0.00 3.33
676 808 3.485216 CGCAACTAATCACCGGAATCAAC 60.485 47.826 9.46 0.00 0.00 3.18
677 809 2.675844 CGCAACTAATCACCGGAATCAA 59.324 45.455 9.46 0.00 0.00 2.57
678 810 2.276201 CGCAACTAATCACCGGAATCA 58.724 47.619 9.46 0.00 0.00 2.57
679 811 2.277084 ACGCAACTAATCACCGGAATC 58.723 47.619 9.46 0.00 0.00 2.52
680 812 2.396590 ACGCAACTAATCACCGGAAT 57.603 45.000 9.46 0.00 0.00 3.01
681 813 2.231964 ACTACGCAACTAATCACCGGAA 59.768 45.455 9.46 0.00 0.00 4.30
682 814 1.820519 ACTACGCAACTAATCACCGGA 59.179 47.619 9.46 0.00 0.00 5.14
686 818 8.181487 TCTTCAATTACTACGCAACTAATCAC 57.819 34.615 0.00 0.00 0.00 3.06
688 820 7.705325 TCCTCTTCAATTACTACGCAACTAATC 59.295 37.037 0.00 0.00 0.00 1.75
692 824 5.401531 TCCTCTTCAATTACTACGCAACT 57.598 39.130 0.00 0.00 0.00 3.16
696 828 5.224135 GGAGATCCTCTTCAATTACTACGC 58.776 45.833 0.00 0.00 0.00 4.42
702 834 5.032846 ACACAGGGAGATCCTCTTCAATTA 58.967 41.667 0.00 0.00 46.12 1.40
716 848 1.489481 TAGCATCTGGACACAGGGAG 58.511 55.000 0.00 0.00 44.99 4.30
718 850 3.287867 AATTAGCATCTGGACACAGGG 57.712 47.619 0.00 0.00 44.99 4.45
719 851 3.629398 GGAAATTAGCATCTGGACACAGG 59.371 47.826 0.00 0.00 44.99 4.00
720 852 3.310774 CGGAAATTAGCATCTGGACACAG 59.689 47.826 0.00 0.00 46.30 3.66
721 853 3.270027 CGGAAATTAGCATCTGGACACA 58.730 45.455 0.00 0.00 0.00 3.72
733 865 2.159572 CGGCACAGGAAACGGAAATTAG 60.160 50.000 0.00 0.00 0.00 1.73
741 873 3.726517 CAGCCGGCACAGGAAACG 61.727 66.667 31.54 0.63 0.00 3.60
829 961 5.163426 TGCAGAGATTCTTTCCTTTTGCAAA 60.163 36.000 8.05 8.05 0.00 3.68
837 969 6.183360 CGATTGATTTGCAGAGATTCTTTCCT 60.183 38.462 0.00 0.00 0.00 3.36
849 981 5.142265 CACGGATAATCGATTGATTTGCAG 58.858 41.667 20.87 9.10 42.14 4.41
858 990 3.401033 TGGATGCACGGATAATCGATT 57.599 42.857 16.15 16.15 0.00 3.34
860 992 2.900716 TTGGATGCACGGATAATCGA 57.099 45.000 0.00 0.00 0.00 3.59
861 993 4.436050 GCTAATTGGATGCACGGATAATCG 60.436 45.833 0.00 0.00 0.00 3.34
862 994 4.142600 GGCTAATTGGATGCACGGATAATC 60.143 45.833 0.00 0.00 0.00 1.75
864 996 3.146066 GGCTAATTGGATGCACGGATAA 58.854 45.455 0.00 0.00 0.00 1.75
866 998 1.609208 GGCTAATTGGATGCACGGAT 58.391 50.000 0.00 0.00 0.00 4.18
867 999 0.465460 GGGCTAATTGGATGCACGGA 60.465 55.000 0.00 0.00 0.00 4.69
868 1000 1.455383 GGGGCTAATTGGATGCACGG 61.455 60.000 0.00 0.00 0.00 4.94
870 1002 0.751643 ACGGGGCTAATTGGATGCAC 60.752 55.000 0.00 0.00 0.00 4.57
871 1003 0.840617 TACGGGGCTAATTGGATGCA 59.159 50.000 0.00 0.00 0.00 3.96
872 1004 1.975660 TTACGGGGCTAATTGGATGC 58.024 50.000 0.00 0.00 0.00 3.91
873 1005 2.742053 CGATTACGGGGCTAATTGGATG 59.258 50.000 0.00 0.00 35.72 3.51
874 1006 2.874457 GCGATTACGGGGCTAATTGGAT 60.874 50.000 0.00 0.00 40.15 3.41
875 1007 1.541670 GCGATTACGGGGCTAATTGGA 60.542 52.381 0.00 0.00 40.15 3.53
876 1008 0.872388 GCGATTACGGGGCTAATTGG 59.128 55.000 0.00 0.00 40.15 3.16
882 1014 3.728279 GAACGGCGATTACGGGGCT 62.728 63.158 16.62 0.00 40.15 5.19
885 1017 1.415374 CTATGAACGGCGATTACGGG 58.585 55.000 16.62 0.00 40.15 5.28
888 1020 3.251571 GGATCCTATGAACGGCGATTAC 58.748 50.000 16.62 1.98 0.00 1.89
900 1032 8.190784 GCGGGAATAATAAAATTGGATCCTATG 58.809 37.037 14.23 0.00 0.00 2.23
902 1034 6.373216 CGCGGGAATAATAAAATTGGATCCTA 59.627 38.462 14.23 5.68 0.00 2.94
948 1087 0.586319 CAGCAACGACCACGAAATGT 59.414 50.000 0.00 0.00 42.66 2.71
957 1096 0.586802 GACCTTCAACAGCAACGACC 59.413 55.000 0.00 0.00 0.00 4.79
1338 1487 1.603739 GTGGTGGAACTTCTGGGGC 60.604 63.158 0.00 0.00 36.74 5.80
1455 1610 4.883354 CAATCCCTCCTGGCGCCC 62.883 72.222 26.77 6.44 0.00 6.13
1478 1633 1.004044 AGCTCCTGGACATTTCACTGG 59.996 52.381 0.00 0.00 0.00 4.00
1671 1826 3.929610 GGAAGTTTTCAGTCATCCTCTCG 59.070 47.826 0.00 0.00 0.00 4.04
1803 1958 2.837291 CTGAGGAGGCCGAGGAGG 60.837 72.222 0.00 0.00 44.97 4.30
1875 2030 4.832823 TCTTTCAGCAGATCGTCCCATATA 59.167 41.667 0.00 0.00 0.00 0.86
2174 2329 1.381872 AGGACCATCTCCCACTCGG 60.382 63.158 0.00 0.00 40.53 4.63
2326 2481 1.057847 CACGAGATCAAAGCGTCGAAC 59.942 52.381 6.78 0.00 35.90 3.95
2331 2486 2.094659 CCGCACGAGATCAAAGCGT 61.095 57.895 16.62 8.53 46.26 5.07
2427 2582 6.127897 GCTGTAACAAGTTTCTGCCTATCAAT 60.128 38.462 9.25 0.00 31.93 2.57
2502 2657 1.222936 CAGGAAGCGGGCAAGAGAT 59.777 57.895 0.00 0.00 0.00 2.75
2508 2663 0.107703 CTGTTATCAGGAAGCGGGCA 60.108 55.000 0.00 0.00 37.97 5.36
2584 2739 0.036732 AGATGCCGAGGCTTTGACAA 59.963 50.000 15.75 0.00 42.51 3.18
2755 2910 3.076621 CCTCTATTGCTGTGTTGCTCAA 58.923 45.455 0.00 0.00 0.00 3.02
2991 3146 0.104120 GTTCACCCACACCTTTTGGC 59.896 55.000 0.00 0.00 45.59 4.52
3012 3167 6.798315 CCAGATAGATGGTTAAGATGCTTG 57.202 41.667 0.00 0.00 35.47 4.01
3234 3389 2.301296 CTCTTGGTTCTCCTGCTCTTCA 59.699 50.000 0.00 0.00 34.23 3.02
3240 3395 1.377856 GCCCTCTTGGTTCTCCTGC 60.378 63.158 0.00 0.00 36.04 4.85
3372 3527 4.499183 AGTTCTTGATTACCAGCTTCTCG 58.501 43.478 0.00 0.00 0.00 4.04
3414 3569 2.124695 GGACCCGCCATCCAGTTC 60.125 66.667 0.00 0.00 36.15 3.01
3507 3662 2.597217 TGTTTCAGGCGGCCAAGG 60.597 61.111 23.09 10.40 0.00 3.61
3534 3689 4.914983 AGTCTGCATTTGAGATTTCCAGA 58.085 39.130 0.00 0.00 0.00 3.86
3628 3783 6.738114 TCATGTTTCTTAGCTTCAAAACCTG 58.262 36.000 12.28 12.35 32.04 4.00
3705 3860 2.229675 TGTGCAGTGACTTGAGACAG 57.770 50.000 0.00 0.00 0.00 3.51
3756 3911 0.390472 CAGCGTCCTTCAGACCTTCC 60.390 60.000 0.00 0.00 43.08 3.46
3765 3920 2.386660 GCACAGAGCAGCGTCCTTC 61.387 63.158 0.00 0.00 44.79 3.46
4041 4196 3.901797 CTCCAGCCACCGTGGGAAC 62.902 68.421 19.41 2.64 38.19 3.62
4091 4246 0.174389 ACACTGCAGCTCGAATCGAT 59.826 50.000 15.27 0.00 34.61 3.59
4346 4504 7.797038 AAACCATATTAAACCGTATCACTCC 57.203 36.000 0.00 0.00 0.00 3.85
4487 4646 0.622665 CCTCAGGCCTCATCAAACCT 59.377 55.000 0.00 0.00 0.00 3.50
5251 5411 1.067669 TGCGCACATAAGTTTGCCAAA 59.932 42.857 5.66 0.00 35.14 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.