Multiple sequence alignment - TraesCS7D01G550600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G550600 chr7D 100.000 2726 0 0 1 2726 634677096 634679821 0.000000e+00 5035.0
1 TraesCS7D01G550600 chr7D 84.844 2052 227 39 446 2472 634669504 634671496 0.000000e+00 1989.0
2 TraesCS7D01G550600 chr7D 87.407 1755 159 28 427 2161 634710153 634708441 0.000000e+00 1960.0
3 TraesCS7D01G550600 chr7D 89.623 106 5 4 1 103 28068829 28068727 2.200000e-26 130.0
4 TraesCS7D01G550600 chr7D 90.909 66 6 0 2491 2556 628400521 628400586 3.740000e-14 89.8
5 TraesCS7D01G550600 chr7B 92.144 2062 142 11 413 2462 741588893 741586840 0.000000e+00 2892.0
6 TraesCS7D01G550600 chr7B 91.334 2031 142 11 224 2245 741558230 741560235 0.000000e+00 2745.0
7 TraesCS7D01G550600 chr7B 85.296 2047 222 37 449 2472 741548872 741550862 0.000000e+00 2039.0
8 TraesCS7D01G550600 chr7B 85.054 2054 204 52 446 2472 741620232 741618255 0.000000e+00 1997.0
9 TraesCS7D01G550600 chr7B 88.599 421 42 4 2054 2472 741554162 741554578 8.710000e-140 507.0
10 TraesCS7D01G550600 chr7B 87.267 322 21 10 111 412 741615967 741615646 1.550000e-92 350.0
11 TraesCS7D01G550600 chr7B 80.074 271 44 7 2460 2726 741559445 741559709 2.770000e-45 193.0
12 TraesCS7D01G550600 chr7B 94.382 89 4 1 2558 2645 741586840 741586752 4.730000e-28 135.0
13 TraesCS7D01G550600 chr7B 89.423 104 9 2 1 103 438367070 438367172 2.200000e-26 130.0
14 TraesCS7D01G550600 chr7B 85.000 80 12 0 2477 2556 730648321 730648242 6.260000e-12 82.4
15 TraesCS7D01G550600 chr7B 89.831 59 5 1 108 165 741557706 741557764 1.050000e-09 75.0
16 TraesCS7D01G550600 chr7A 90.797 1706 139 7 1030 2726 731283062 731281366 0.000000e+00 2265.0
17 TraesCS7D01G550600 chr7A 87.813 1756 147 30 427 2161 731252536 731254245 0.000000e+00 1995.0
18 TraesCS7D01G550600 chr7A 85.272 2003 219 37 489 2472 731389588 731387643 0.000000e+00 1995.0
19 TraesCS7D01G550600 chr7A 90.211 1563 103 18 911 2472 731236494 731238007 0.000000e+00 1993.0
20 TraesCS7D01G550600 chr7A 84.125 1852 210 42 168 2005 731016990 731018771 0.000000e+00 1714.0
21 TraesCS7D01G550600 chr7A 84.403 1699 197 41 243 1921 731501901 731500251 0.000000e+00 1607.0
22 TraesCS7D01G550600 chr7A 89.807 932 80 9 113 1035 731292779 731291854 0.000000e+00 1181.0
23 TraesCS7D01G550600 chr7A 84.060 596 61 11 1908 2472 731385797 731385205 6.640000e-151 544.0
24 TraesCS7D01G550600 chr7A 82.090 268 38 7 2460 2723 731237001 731237262 1.270000e-53 220.0
25 TraesCS7D01G550600 chr7A 81.618 272 38 9 2460 2726 731018205 731018469 5.910000e-52 215.0
26 TraesCS7D01G550600 chr7A 81.343 268 40 7 2460 2723 731253520 731253781 2.750000e-50 209.0
27 TraesCS7D01G550600 chr7A 89.552 67 7 0 2490 2556 724736016 724735950 4.840000e-13 86.1
28 TraesCS7D01G550600 chr4B 84.906 1855 212 44 166 2005 625077493 625079294 0.000000e+00 1812.0
29 TraesCS7D01G550600 chr4B 88.934 244 25 2 2090 2333 625079549 625079790 1.590000e-77 300.0
30 TraesCS7D01G550600 chr6D 76.998 1439 219 62 878 2244 441397604 441399002 0.000000e+00 721.0
31 TraesCS7D01G550600 chr6D 76.832 1433 224 58 878 2240 441316742 441318136 0.000000e+00 708.0
32 TraesCS7D01G550600 chr6D 77.612 268 43 11 2472 2726 441100925 441101188 2.190000e-31 147.0
33 TraesCS7D01G550600 chr6D 90.476 105 10 0 1 105 199668355 199668251 3.660000e-29 139.0
34 TraesCS7D01G550600 chr6D 79.444 180 31 4 2472 2649 441291809 441291984 3.690000e-24 122.0
35 TraesCS7D01G550600 chr3D 91.262 103 8 1 1 103 593073530 593073429 3.660000e-29 139.0
36 TraesCS7D01G550600 chr3D 88.679 106 8 3 1 105 317409238 317409136 2.850000e-25 126.0
37 TraesCS7D01G550600 chr6B 89.423 104 9 2 1 103 433038852 433038954 2.200000e-26 130.0
38 TraesCS7D01G550600 chr6B 88.679 106 10 1 1 106 321319149 321319046 7.920000e-26 128.0
39 TraesCS7D01G550600 chr6B 94.595 37 2 0 750 786 666095625 666095661 1.050000e-04 58.4
40 TraesCS7D01G550600 chr6B 94.444 36 2 0 750 785 666051702 666051737 3.790000e-04 56.5
41 TraesCS7D01G550600 chr2A 89.320 103 11 0 1 103 639689314 639689212 2.200000e-26 130.0
42 TraesCS7D01G550600 chr3B 88.679 106 8 3 1 104 30513629 30513732 2.850000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G550600 chr7D 634677096 634679821 2725 False 5035.0 5035 100.0000 1 2726 1 chr7D.!!$F3 2725
1 TraesCS7D01G550600 chr7D 634669504 634671496 1992 False 1989.0 1989 84.8440 446 2472 1 chr7D.!!$F2 2026
2 TraesCS7D01G550600 chr7D 634708441 634710153 1712 True 1960.0 1960 87.4070 427 2161 1 chr7D.!!$R2 1734
3 TraesCS7D01G550600 chr7B 741586752 741588893 2141 True 1513.5 2892 93.2630 413 2645 2 chr7B.!!$R2 2232
4 TraesCS7D01G550600 chr7B 741615646 741620232 4586 True 1173.5 1997 86.1605 111 2472 2 chr7B.!!$R3 2361
5 TraesCS7D01G550600 chr7B 741548872 741560235 11363 False 1111.8 2745 87.0268 108 2726 5 chr7B.!!$F2 2618
6 TraesCS7D01G550600 chr7A 731281366 731283062 1696 True 2265.0 2265 90.7970 1030 2726 1 chr7A.!!$R2 1696
7 TraesCS7D01G550600 chr7A 731500251 731501901 1650 True 1607.0 1607 84.4030 243 1921 1 chr7A.!!$R4 1678
8 TraesCS7D01G550600 chr7A 731385205 731389588 4383 True 1269.5 1995 84.6660 489 2472 2 chr7A.!!$R5 1983
9 TraesCS7D01G550600 chr7A 731291854 731292779 925 True 1181.0 1181 89.8070 113 1035 1 chr7A.!!$R3 922
10 TraesCS7D01G550600 chr7A 731236494 731238007 1513 False 1106.5 1993 86.1505 911 2723 2 chr7A.!!$F2 1812
11 TraesCS7D01G550600 chr7A 731252536 731254245 1709 False 1102.0 1995 84.5780 427 2723 2 chr7A.!!$F3 2296
12 TraesCS7D01G550600 chr7A 731016990 731018771 1781 False 964.5 1714 82.8715 168 2726 2 chr7A.!!$F1 2558
13 TraesCS7D01G550600 chr4B 625077493 625079790 2297 False 1056.0 1812 86.9200 166 2333 2 chr4B.!!$F1 2167
14 TraesCS7D01G550600 chr6D 441397604 441399002 1398 False 721.0 721 76.9980 878 2244 1 chr6D.!!$F4 1366
15 TraesCS7D01G550600 chr6D 441316742 441318136 1394 False 708.0 708 76.8320 878 2240 1 chr6D.!!$F3 1362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.44231 TGCAATTTACTCGTCAGCGC 59.558 50.0 0.0 0.0 38.14 5.92 F
1147 10817 0.53065 CGATGCCAAGACCTGCGTAT 60.531 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 10951 0.168788 GCTTGTCAATGCGCTTGCTA 59.831 50.0 9.73 0.79 40.12 3.49 R
2480 16555 0.247262 CCATGCGTTCGTCGATGTTG 60.247 55.0 4.21 0.00 42.86 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.747565 TGCAAAAAGATTACTCAAGACGTG 58.252 37.500 0.00 0.00 0.00 4.49
24 25 5.147162 GCAAAAAGATTACTCAAGACGTGG 58.853 41.667 0.00 0.00 0.00 4.94
25 26 5.277828 GCAAAAAGATTACTCAAGACGTGGT 60.278 40.000 0.00 0.00 0.00 4.16
26 27 5.924475 AAAAGATTACTCAAGACGTGGTG 57.076 39.130 0.00 0.00 0.00 4.17
27 28 4.602340 AAGATTACTCAAGACGTGGTGT 57.398 40.909 0.00 0.00 0.00 4.16
28 29 4.602340 AGATTACTCAAGACGTGGTGTT 57.398 40.909 0.00 0.00 0.00 3.32
29 30 4.957296 AGATTACTCAAGACGTGGTGTTT 58.043 39.130 0.00 0.00 0.00 2.83
30 31 5.365619 AGATTACTCAAGACGTGGTGTTTT 58.634 37.500 0.00 0.00 0.00 2.43
31 32 5.465724 AGATTACTCAAGACGTGGTGTTTTC 59.534 40.000 0.00 0.00 0.00 2.29
32 33 3.261981 ACTCAAGACGTGGTGTTTTCT 57.738 42.857 0.00 0.00 0.00 2.52
33 34 2.936498 ACTCAAGACGTGGTGTTTTCTG 59.064 45.455 0.00 0.00 0.00 3.02
34 35 2.936498 CTCAAGACGTGGTGTTTTCTGT 59.064 45.455 0.00 0.00 0.00 3.41
35 36 3.340034 TCAAGACGTGGTGTTTTCTGTT 58.660 40.909 0.00 0.00 0.00 3.16
36 37 3.126171 TCAAGACGTGGTGTTTTCTGTTG 59.874 43.478 0.00 0.00 0.00 3.33
37 38 2.980568 AGACGTGGTGTTTTCTGTTGA 58.019 42.857 0.00 0.00 0.00 3.18
38 39 3.340034 AGACGTGGTGTTTTCTGTTGAA 58.660 40.909 0.00 0.00 0.00 2.69
39 40 3.754323 AGACGTGGTGTTTTCTGTTGAAA 59.246 39.130 0.00 0.00 40.08 2.69
40 41 4.216687 AGACGTGGTGTTTTCTGTTGAAAA 59.783 37.500 0.00 0.49 46.27 2.29
62 63 7.832503 AAAAATATAGCATGGTGTTTTCTGC 57.167 32.000 7.89 0.00 34.85 4.26
63 64 6.528537 AAATATAGCATGGTGTTTTCTGCA 57.471 33.333 7.89 0.00 37.09 4.41
64 65 6.528537 AATATAGCATGGTGTTTTCTGCAA 57.471 33.333 7.89 0.00 37.09 4.08
65 66 4.870123 ATAGCATGGTGTTTTCTGCAAA 57.130 36.364 7.89 0.00 37.09 3.68
66 67 2.825205 AGCATGGTGTTTTCTGCAAAC 58.175 42.857 0.00 0.00 44.64 2.93
67 68 1.866601 GCATGGTGTTTTCTGCAAACC 59.133 47.619 0.64 0.00 43.87 3.27
68 69 2.483538 GCATGGTGTTTTCTGCAAACCT 60.484 45.455 0.64 0.00 43.87 3.50
69 70 3.243704 GCATGGTGTTTTCTGCAAACCTA 60.244 43.478 0.64 0.00 43.87 3.08
70 71 4.549458 CATGGTGTTTTCTGCAAACCTAG 58.451 43.478 0.64 0.00 43.87 3.02
71 72 2.360801 TGGTGTTTTCTGCAAACCTAGC 59.639 45.455 0.64 0.00 43.87 3.42
72 73 2.288213 GGTGTTTTCTGCAAACCTAGCC 60.288 50.000 0.64 0.00 43.87 3.93
73 74 2.623416 GTGTTTTCTGCAAACCTAGCCT 59.377 45.455 0.64 0.00 43.87 4.58
74 75 3.068165 GTGTTTTCTGCAAACCTAGCCTT 59.932 43.478 0.64 0.00 43.87 4.35
75 76 3.317993 TGTTTTCTGCAAACCTAGCCTTC 59.682 43.478 0.64 0.00 43.87 3.46
76 77 2.949177 TTCTGCAAACCTAGCCTTCA 57.051 45.000 0.00 0.00 0.00 3.02
77 78 2.949177 TCTGCAAACCTAGCCTTCAA 57.051 45.000 0.00 0.00 0.00 2.69
78 79 3.222173 TCTGCAAACCTAGCCTTCAAA 57.778 42.857 0.00 0.00 0.00 2.69
79 80 3.149196 TCTGCAAACCTAGCCTTCAAAG 58.851 45.455 0.00 0.00 0.00 2.77
80 81 2.887152 CTGCAAACCTAGCCTTCAAAGT 59.113 45.455 0.00 0.00 0.00 2.66
81 82 2.622942 TGCAAACCTAGCCTTCAAAGTG 59.377 45.455 0.00 0.00 0.00 3.16
82 83 2.029918 GCAAACCTAGCCTTCAAAGTGG 60.030 50.000 0.00 0.00 0.00 4.00
83 84 3.222603 CAAACCTAGCCTTCAAAGTGGT 58.777 45.455 0.00 0.00 0.00 4.16
84 85 2.568623 ACCTAGCCTTCAAAGTGGTG 57.431 50.000 0.00 0.00 0.00 4.17
85 86 1.073923 ACCTAGCCTTCAAAGTGGTGG 59.926 52.381 0.00 0.00 0.00 4.61
86 87 1.073923 CCTAGCCTTCAAAGTGGTGGT 59.926 52.381 0.00 0.00 0.00 4.16
87 88 2.489073 CCTAGCCTTCAAAGTGGTGGTT 60.489 50.000 0.00 0.00 0.00 3.67
88 89 2.159179 AGCCTTCAAAGTGGTGGTTT 57.841 45.000 0.00 0.00 0.00 3.27
89 90 2.466846 AGCCTTCAAAGTGGTGGTTTT 58.533 42.857 0.00 0.00 0.00 2.43
90 91 2.168313 AGCCTTCAAAGTGGTGGTTTTG 59.832 45.455 0.00 0.00 36.00 2.44
91 92 2.093711 GCCTTCAAAGTGGTGGTTTTGT 60.094 45.455 0.00 0.00 36.09 2.83
92 93 3.520569 CCTTCAAAGTGGTGGTTTTGTG 58.479 45.455 0.00 0.00 36.09 3.33
93 94 2.663826 TCAAAGTGGTGGTTTTGTGC 57.336 45.000 0.00 0.00 36.09 4.57
94 95 1.895798 TCAAAGTGGTGGTTTTGTGCA 59.104 42.857 0.00 0.00 36.09 4.57
95 96 2.300152 TCAAAGTGGTGGTTTTGTGCAA 59.700 40.909 0.00 0.00 36.09 4.08
96 97 3.055530 TCAAAGTGGTGGTTTTGTGCAAT 60.056 39.130 0.00 0.00 36.09 3.56
97 98 3.625649 AAGTGGTGGTTTTGTGCAATT 57.374 38.095 0.00 0.00 0.00 2.32
98 99 3.625649 AGTGGTGGTTTTGTGCAATTT 57.374 38.095 0.00 0.00 0.00 1.82
99 100 4.744795 AGTGGTGGTTTTGTGCAATTTA 57.255 36.364 0.00 0.00 0.00 1.40
100 101 4.438148 AGTGGTGGTTTTGTGCAATTTAC 58.562 39.130 0.00 0.00 0.00 2.01
101 102 4.161377 AGTGGTGGTTTTGTGCAATTTACT 59.839 37.500 0.00 0.00 0.00 2.24
102 103 4.506288 GTGGTGGTTTTGTGCAATTTACTC 59.494 41.667 0.00 0.00 0.00 2.59
103 104 3.733727 GGTGGTTTTGTGCAATTTACTCG 59.266 43.478 0.00 0.00 0.00 4.18
104 105 4.356289 GTGGTTTTGTGCAATTTACTCGT 58.644 39.130 0.00 0.00 0.00 4.18
105 106 4.439776 GTGGTTTTGTGCAATTTACTCGTC 59.560 41.667 0.00 0.00 0.00 4.20
106 107 4.096532 TGGTTTTGTGCAATTTACTCGTCA 59.903 37.500 0.00 0.00 0.00 4.35
107 108 4.675114 GGTTTTGTGCAATTTACTCGTCAG 59.325 41.667 0.00 0.00 0.00 3.51
108 109 3.536158 TTGTGCAATTTACTCGTCAGC 57.464 42.857 0.00 0.00 0.00 4.26
109 110 1.459209 TGTGCAATTTACTCGTCAGCG 59.541 47.619 0.00 0.00 39.92 5.18
110 111 0.442310 TGCAATTTACTCGTCAGCGC 59.558 50.000 0.00 0.00 38.14 5.92
111 112 0.442310 GCAATTTACTCGTCAGCGCA 59.558 50.000 11.47 0.00 38.14 6.09
126 127 0.736325 GCGCAGTATCTTGGACGTGT 60.736 55.000 0.30 0.00 0.00 4.49
129 130 2.683968 GCAGTATCTTGGACGTGTTCA 58.316 47.619 0.00 0.00 0.00 3.18
149 150 3.960755 TCATAGGAGTAGGATGTGTGTGG 59.039 47.826 0.00 0.00 0.00 4.17
150 151 1.573108 AGGAGTAGGATGTGTGTGGG 58.427 55.000 0.00 0.00 0.00 4.61
153 154 1.899814 GAGTAGGATGTGTGTGGGTGA 59.100 52.381 0.00 0.00 0.00 4.02
161 162 5.191722 AGGATGTGTGTGGGTGAGTTTATAT 59.808 40.000 0.00 0.00 0.00 0.86
162 163 5.296780 GGATGTGTGTGGGTGAGTTTATATG 59.703 44.000 0.00 0.00 0.00 1.78
163 164 4.584874 TGTGTGTGGGTGAGTTTATATGG 58.415 43.478 0.00 0.00 0.00 2.74
164 165 3.945285 GTGTGTGGGTGAGTTTATATGGG 59.055 47.826 0.00 0.00 0.00 4.00
194 197 4.041567 TGTGTGTGTGTCTTCCTGGATATT 59.958 41.667 0.00 0.00 0.00 1.28
294 300 7.271936 CAACTTATGTTGTTTTGTTTGTCGT 57.728 32.000 12.21 0.00 46.08 4.34
322 330 5.418310 AGTCAACCACAACTAATCAAACG 57.582 39.130 0.00 0.00 0.00 3.60
329 337 3.974401 CACAACTAATCAAACGTGGCAAG 59.026 43.478 0.00 0.00 0.00 4.01
382 391 5.804692 TTCACGTTTTTCTGAGCTTGTTA 57.195 34.783 0.00 0.00 0.00 2.41
402 411 6.299922 TGTTATGTTGTTATCTGGTTGGTGA 58.700 36.000 0.00 0.00 0.00 4.02
463 477 7.756395 ATGATAGGATTTGAGCCTGTTTATG 57.244 36.000 0.00 0.00 36.96 1.90
566 596 6.811253 AATAGTGCATTTGTTCGGTCTAAA 57.189 33.333 0.00 0.00 0.00 1.85
581 611 4.694339 GGTCTAAATGATACGAGCAAGGT 58.306 43.478 0.00 0.00 0.00 3.50
689 720 3.006940 GCATCACGTGGAAACCATTAGA 58.993 45.455 17.00 0.00 35.28 2.10
709 740 8.552034 CATTAGAGCGTGTATGATATATCTCGA 58.448 37.037 13.79 0.00 0.00 4.04
720 751 6.862711 TGATATATCTCGATCCCGTGATAC 57.137 41.667 13.79 2.26 46.89 2.24
789 855 6.767524 TGGACGCCAAATTTACAAATAGAT 57.232 33.333 0.00 0.00 0.00 1.98
816 10469 2.060050 AGGTCGGATCGAAGATCTGT 57.940 50.000 15.85 0.00 45.12 3.41
838 10491 5.679792 TGTTAGATATTCGATCACGTTCACG 59.320 40.000 0.00 0.00 46.33 4.35
853 10506 4.462483 ACGTTCACGGGTACTAAATAAGGA 59.538 41.667 4.07 0.00 44.95 3.36
869 10522 3.908643 AAGGAAATCTTCTCGGTACCC 57.091 47.619 6.25 0.00 0.00 3.69
916 10569 6.542821 TCATGAAATTATTCCCTAGGCGATT 58.457 36.000 2.05 1.90 34.49 3.34
991 10645 3.089284 CCTTCGCTGGTTTTATCCCTTT 58.911 45.455 0.00 0.00 0.00 3.11
1147 10817 0.530650 CGATGCCAAGACCTGCGTAT 60.531 55.000 0.00 0.00 0.00 3.06
1170 10840 1.220749 GTACGATGAGGGCAAGGCA 59.779 57.895 0.00 0.00 0.00 4.75
1281 10951 3.820467 TGATGAACCAGAAGCGTTTCATT 59.180 39.130 14.70 5.44 35.70 2.57
1308 10978 0.960364 GCATTGACAAGCTCCGGGAA 60.960 55.000 0.00 0.00 0.00 3.97
1319 10989 2.214181 CTCCGGGAACAGGTCGACAG 62.214 65.000 18.91 11.75 0.00 3.51
1661 11347 1.731720 GCCAACTTCTCTAGCAGTGG 58.268 55.000 0.00 0.00 0.00 4.00
1668 11357 5.528043 ACTTCTCTAGCAGTGGTATGATG 57.472 43.478 1.83 8.97 0.00 3.07
1669 11358 5.204292 ACTTCTCTAGCAGTGGTATGATGA 58.796 41.667 17.25 6.96 0.00 2.92
1670 11359 5.837979 ACTTCTCTAGCAGTGGTATGATGAT 59.162 40.000 17.25 6.56 0.00 2.45
1802 11494 5.582665 GTGGTTAGGATGAGACATTCAGTTC 59.417 44.000 0.00 0.00 39.68 3.01
1979 11687 3.746492 GGTCGTAAATCTTGAGTTGCACT 59.254 43.478 0.00 0.00 0.00 4.40
2182 12151 1.035139 GGCCAGCTAAATGTGATGGG 58.965 55.000 0.00 0.00 0.00 4.00
2254 12223 7.607607 TGTGACTTAATTACATGATGACAGCTT 59.392 33.333 0.00 0.00 0.00 3.74
2268 12237 1.481772 ACAGCTTGCCACACACAAATT 59.518 42.857 0.00 0.00 0.00 1.82
2285 14692 5.230726 CACAAATTTCAGAAATAGCGATGCC 59.769 40.000 8.88 0.00 0.00 4.40
2293 14700 4.067896 AGAAATAGCGATGCCCTACATTG 58.932 43.478 0.00 0.00 39.84 2.82
2294 14701 3.492102 AATAGCGATGCCCTACATTGT 57.508 42.857 0.00 0.00 41.64 2.71
2295 14702 2.238942 TAGCGATGCCCTACATTGTG 57.761 50.000 0.00 0.00 41.64 3.33
2296 14703 1.097547 AGCGATGCCCTACATTGTGC 61.098 55.000 0.00 0.00 41.64 4.57
2297 14704 1.097547 GCGATGCCCTACATTGTGCT 61.098 55.000 0.00 0.00 41.64 4.40
2298 14705 0.940126 CGATGCCCTACATTGTGCTC 59.060 55.000 0.00 0.00 39.84 4.26
2299 14706 1.473965 CGATGCCCTACATTGTGCTCT 60.474 52.381 0.00 0.00 39.84 4.09
2300 14707 2.216898 GATGCCCTACATTGTGCTCTC 58.783 52.381 0.00 0.00 39.84 3.20
2301 14708 0.253044 TGCCCTACATTGTGCTCTCC 59.747 55.000 0.00 0.00 0.00 3.71
2302 14709 0.543749 GCCCTACATTGTGCTCTCCT 59.456 55.000 0.00 0.00 0.00 3.69
2303 14710 1.065126 GCCCTACATTGTGCTCTCCTT 60.065 52.381 0.00 0.00 0.00 3.36
2304 14711 2.170607 GCCCTACATTGTGCTCTCCTTA 59.829 50.000 0.00 0.00 0.00 2.69
2305 14712 3.742640 GCCCTACATTGTGCTCTCCTTAG 60.743 52.174 0.00 0.00 0.00 2.18
2306 14713 3.452627 CCCTACATTGTGCTCTCCTTAGT 59.547 47.826 0.00 0.00 0.00 2.24
2307 14714 4.080863 CCCTACATTGTGCTCTCCTTAGTT 60.081 45.833 0.00 0.00 0.00 2.24
2308 14715 4.872691 CCTACATTGTGCTCTCCTTAGTTG 59.127 45.833 0.00 0.00 0.00 3.16
2309 14716 4.357918 ACATTGTGCTCTCCTTAGTTGT 57.642 40.909 0.00 0.00 0.00 3.32
2310 14717 5.483685 ACATTGTGCTCTCCTTAGTTGTA 57.516 39.130 0.00 0.00 0.00 2.41
2311 14718 5.482908 ACATTGTGCTCTCCTTAGTTGTAG 58.517 41.667 0.00 0.00 0.00 2.74
2312 14719 5.012148 ACATTGTGCTCTCCTTAGTTGTAGT 59.988 40.000 0.00 0.00 0.00 2.73
2313 14720 4.785511 TGTGCTCTCCTTAGTTGTAGTC 57.214 45.455 0.00 0.00 0.00 2.59
2314 14721 4.149598 TGTGCTCTCCTTAGTTGTAGTCA 58.850 43.478 0.00 0.00 0.00 3.41
2315 14722 4.772624 TGTGCTCTCCTTAGTTGTAGTCAT 59.227 41.667 0.00 0.00 0.00 3.06
2316 14723 5.949952 TGTGCTCTCCTTAGTTGTAGTCATA 59.050 40.000 0.00 0.00 0.00 2.15
2317 14724 6.607600 TGTGCTCTCCTTAGTTGTAGTCATAT 59.392 38.462 0.00 0.00 0.00 1.78
2318 14725 7.124298 TGTGCTCTCCTTAGTTGTAGTCATATT 59.876 37.037 0.00 0.00 0.00 1.28
2319 14726 7.650104 GTGCTCTCCTTAGTTGTAGTCATATTC 59.350 40.741 0.00 0.00 0.00 1.75
2320 14727 7.561722 TGCTCTCCTTAGTTGTAGTCATATTCT 59.438 37.037 0.00 0.00 0.00 2.40
2321 14728 8.417884 GCTCTCCTTAGTTGTAGTCATATTCTT 58.582 37.037 0.00 0.00 0.00 2.52
2341 14748 7.703058 TTCTTTATTTTTCAGACCATCCTCC 57.297 36.000 0.00 0.00 0.00 4.30
2342 14749 7.032598 TCTTTATTTTTCAGACCATCCTCCT 57.967 36.000 0.00 0.00 0.00 3.69
2343 14750 7.470192 TCTTTATTTTTCAGACCATCCTCCTT 58.530 34.615 0.00 0.00 0.00 3.36
2404 14865 1.684983 ACCGTCCTTCGTTCTTCAGAA 59.315 47.619 0.00 0.00 37.94 3.02
2493 16568 2.400399 TCCTCAACAACATCGACGAAC 58.600 47.619 0.00 0.00 0.00 3.95
2501 16576 2.125713 ATCGACGAACGCATGGCA 60.126 55.556 0.00 0.00 42.26 4.92
2554 16629 2.359107 CGTCACCACTGGCAGCAT 60.359 61.111 15.89 0.00 0.00 3.79
2555 16630 1.079197 CGTCACCACTGGCAGCATA 60.079 57.895 15.89 0.00 0.00 3.14
2556 16631 0.462581 CGTCACCACTGGCAGCATAT 60.463 55.000 15.89 0.00 0.00 1.78
2603 16679 1.453379 GGCACCATCTCAGCAGCAT 60.453 57.895 0.00 0.00 0.00 3.79
2609 16685 1.408405 CCATCTCAGCAGCATGAGGTT 60.408 52.381 17.00 7.01 45.60 3.50
2655 16731 0.173708 GACCTCGACACCCTCATCAC 59.826 60.000 0.00 0.00 0.00 3.06
2663 16739 0.904649 CACCCTCATCACAGTGGCTA 59.095 55.000 0.00 0.00 0.00 3.93
2664 16740 1.487976 CACCCTCATCACAGTGGCTAT 59.512 52.381 0.00 0.00 0.00 2.97
2667 16743 2.484417 CCCTCATCACAGTGGCTATGTC 60.484 54.545 0.00 0.00 0.00 3.06
2706 17498 4.437524 GCAGTGATATGATGATGCAGATGC 60.438 45.833 0.00 0.00 42.50 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.136071 CACCACGTCTTGAGTAATCTTTTTG 58.864 40.000 0.00 0.00 0.00 2.44
3 4 5.820947 ACACCACGTCTTGAGTAATCTTTTT 59.179 36.000 0.00 0.00 0.00 1.94
5 6 4.957296 ACACCACGTCTTGAGTAATCTTT 58.043 39.130 0.00 0.00 0.00 2.52
6 7 4.602340 ACACCACGTCTTGAGTAATCTT 57.398 40.909 0.00 0.00 0.00 2.40
7 8 4.602340 AACACCACGTCTTGAGTAATCT 57.398 40.909 0.00 0.00 0.00 2.40
8 9 5.465724 AGAAAACACCACGTCTTGAGTAATC 59.534 40.000 0.00 0.00 0.00 1.75
9 10 5.236478 CAGAAAACACCACGTCTTGAGTAAT 59.764 40.000 0.00 0.00 0.00 1.89
10 11 4.569162 CAGAAAACACCACGTCTTGAGTAA 59.431 41.667 0.00 0.00 0.00 2.24
11 12 4.116961 CAGAAAACACCACGTCTTGAGTA 58.883 43.478 0.00 0.00 0.00 2.59
12 13 2.936498 CAGAAAACACCACGTCTTGAGT 59.064 45.455 0.00 0.00 0.00 3.41
13 14 2.936498 ACAGAAAACACCACGTCTTGAG 59.064 45.455 0.00 0.00 0.00 3.02
14 15 2.980568 ACAGAAAACACCACGTCTTGA 58.019 42.857 0.00 0.00 0.00 3.02
15 16 3.126171 TCAACAGAAAACACCACGTCTTG 59.874 43.478 0.00 0.00 0.00 3.02
16 17 3.340034 TCAACAGAAAACACCACGTCTT 58.660 40.909 0.00 0.00 0.00 3.01
17 18 2.980568 TCAACAGAAAACACCACGTCT 58.019 42.857 0.00 0.00 0.00 4.18
18 19 3.750639 TTCAACAGAAAACACCACGTC 57.249 42.857 0.00 0.00 0.00 4.34
19 20 4.506886 TTTTCAACAGAAAACACCACGT 57.493 36.364 0.00 0.00 36.59 4.49
38 39 7.385267 TGCAGAAAACACCATGCTATATTTTT 58.615 30.769 0.00 0.00 39.42 1.94
39 40 6.934056 TGCAGAAAACACCATGCTATATTTT 58.066 32.000 0.00 0.00 39.42 1.82
40 41 6.528537 TGCAGAAAACACCATGCTATATTT 57.471 33.333 0.00 0.00 39.42 1.40
41 42 6.528537 TTGCAGAAAACACCATGCTATATT 57.471 33.333 0.00 0.00 39.42 1.28
42 43 6.332630 GTTTGCAGAAAACACCATGCTATAT 58.667 36.000 0.00 0.00 46.30 0.86
43 44 5.708948 GTTTGCAGAAAACACCATGCTATA 58.291 37.500 0.00 0.00 46.30 1.31
44 45 4.559153 GTTTGCAGAAAACACCATGCTAT 58.441 39.130 0.00 0.00 46.30 2.97
45 46 3.976169 GTTTGCAGAAAACACCATGCTA 58.024 40.909 0.00 0.00 46.30 3.49
46 47 2.825205 GTTTGCAGAAAACACCATGCT 58.175 42.857 0.00 0.00 46.30 3.79
54 55 3.317993 TGAAGGCTAGGTTTGCAGAAAAC 59.682 43.478 0.00 0.00 46.32 2.43
55 56 3.561143 TGAAGGCTAGGTTTGCAGAAAA 58.439 40.909 0.00 0.00 0.00 2.29
56 57 3.222173 TGAAGGCTAGGTTTGCAGAAA 57.778 42.857 0.00 0.00 0.00 2.52
57 58 2.949177 TGAAGGCTAGGTTTGCAGAA 57.051 45.000 0.00 0.00 0.00 3.02
58 59 2.949177 TTGAAGGCTAGGTTTGCAGA 57.051 45.000 0.00 0.00 0.00 4.26
59 60 2.887152 ACTTTGAAGGCTAGGTTTGCAG 59.113 45.455 0.00 0.00 0.00 4.41
60 61 2.622942 CACTTTGAAGGCTAGGTTTGCA 59.377 45.455 0.00 0.00 0.00 4.08
61 62 2.029918 CCACTTTGAAGGCTAGGTTTGC 60.030 50.000 0.00 0.00 0.00 3.68
62 63 3.004734 CACCACTTTGAAGGCTAGGTTTG 59.995 47.826 0.00 0.00 0.00 2.93
63 64 3.222603 CACCACTTTGAAGGCTAGGTTT 58.777 45.455 0.00 0.00 0.00 3.27
64 65 2.489073 CCACCACTTTGAAGGCTAGGTT 60.489 50.000 0.00 0.00 0.00 3.50
65 66 1.073923 CCACCACTTTGAAGGCTAGGT 59.926 52.381 0.00 0.00 0.00 3.08
66 67 1.073923 ACCACCACTTTGAAGGCTAGG 59.926 52.381 0.00 0.00 0.00 3.02
67 68 2.568623 ACCACCACTTTGAAGGCTAG 57.431 50.000 0.00 0.00 0.00 3.42
68 69 3.306472 AAACCACCACTTTGAAGGCTA 57.694 42.857 0.00 0.00 0.00 3.93
69 70 2.159179 AAACCACCACTTTGAAGGCT 57.841 45.000 0.00 0.00 0.00 4.58
70 71 2.093711 ACAAAACCACCACTTTGAAGGC 60.094 45.455 1.80 0.00 36.30 4.35
71 72 3.520569 CACAAAACCACCACTTTGAAGG 58.479 45.455 1.80 0.00 36.30 3.46
72 73 2.929398 GCACAAAACCACCACTTTGAAG 59.071 45.455 1.80 0.00 36.30 3.02
73 74 2.300152 TGCACAAAACCACCACTTTGAA 59.700 40.909 1.80 0.00 36.30 2.69
74 75 1.895798 TGCACAAAACCACCACTTTGA 59.104 42.857 1.80 0.00 36.30 2.69
75 76 2.376808 TGCACAAAACCACCACTTTG 57.623 45.000 0.00 0.00 38.29 2.77
76 77 3.625649 ATTGCACAAAACCACCACTTT 57.374 38.095 0.00 0.00 0.00 2.66
77 78 3.625649 AATTGCACAAAACCACCACTT 57.374 38.095 0.00 0.00 0.00 3.16
78 79 3.625649 AAATTGCACAAAACCACCACT 57.374 38.095 0.00 0.00 0.00 4.00
79 80 4.438148 AGTAAATTGCACAAAACCACCAC 58.562 39.130 0.00 0.00 0.00 4.16
80 81 4.688021 GAGTAAATTGCACAAAACCACCA 58.312 39.130 0.00 0.00 0.00 4.17
81 82 3.733727 CGAGTAAATTGCACAAAACCACC 59.266 43.478 0.00 0.00 0.00 4.61
82 83 4.356289 ACGAGTAAATTGCACAAAACCAC 58.644 39.130 0.00 0.00 0.00 4.16
83 84 4.096532 TGACGAGTAAATTGCACAAAACCA 59.903 37.500 0.00 0.00 0.00 3.67
84 85 4.602995 TGACGAGTAAATTGCACAAAACC 58.397 39.130 0.00 0.00 0.00 3.27
85 86 4.146443 GCTGACGAGTAAATTGCACAAAAC 59.854 41.667 0.00 0.00 0.00 2.43
86 87 4.286910 GCTGACGAGTAAATTGCACAAAA 58.713 39.130 0.00 0.00 0.00 2.44
87 88 3.605922 CGCTGACGAGTAAATTGCACAAA 60.606 43.478 0.00 0.00 43.93 2.83
88 89 2.096466 CGCTGACGAGTAAATTGCACAA 60.096 45.455 0.00 0.00 43.93 3.33
89 90 1.459209 CGCTGACGAGTAAATTGCACA 59.541 47.619 0.00 0.00 43.93 4.57
90 91 1.786928 GCGCTGACGAGTAAATTGCAC 60.787 52.381 0.00 0.00 43.93 4.57
91 92 0.442310 GCGCTGACGAGTAAATTGCA 59.558 50.000 0.00 0.00 43.93 4.08
92 93 0.442310 TGCGCTGACGAGTAAATTGC 59.558 50.000 9.73 0.00 43.93 3.56
93 94 1.726791 ACTGCGCTGACGAGTAAATTG 59.273 47.619 21.92 0.00 43.93 2.32
94 95 2.080286 ACTGCGCTGACGAGTAAATT 57.920 45.000 21.92 0.00 43.93 1.82
95 96 2.933495 TACTGCGCTGACGAGTAAAT 57.067 45.000 21.92 0.00 43.93 1.40
96 97 2.422479 AGATACTGCGCTGACGAGTAAA 59.578 45.455 21.92 0.00 43.93 2.01
97 98 2.014857 AGATACTGCGCTGACGAGTAA 58.985 47.619 21.92 0.00 43.93 2.24
98 99 1.664873 AGATACTGCGCTGACGAGTA 58.335 50.000 21.92 13.87 43.93 2.59
99 100 0.811915 AAGATACTGCGCTGACGAGT 59.188 50.000 21.92 11.94 43.93 4.18
100 101 1.195347 CAAGATACTGCGCTGACGAG 58.805 55.000 21.92 5.63 43.93 4.18
101 102 0.179137 CCAAGATACTGCGCTGACGA 60.179 55.000 21.92 6.05 43.93 4.20
102 103 0.179137 TCCAAGATACTGCGCTGACG 60.179 55.000 21.92 3.13 44.07 4.35
103 104 1.281899 GTCCAAGATACTGCGCTGAC 58.718 55.000 21.92 11.27 0.00 3.51
104 105 0.179137 CGTCCAAGATACTGCGCTGA 60.179 55.000 21.92 5.13 0.00 4.26
105 106 0.458543 ACGTCCAAGATACTGCGCTG 60.459 55.000 13.23 13.23 0.00 5.18
106 107 0.458543 CACGTCCAAGATACTGCGCT 60.459 55.000 9.73 0.00 0.00 5.92
107 108 0.736325 ACACGTCCAAGATACTGCGC 60.736 55.000 0.00 0.00 0.00 6.09
108 109 1.654105 GAACACGTCCAAGATACTGCG 59.346 52.381 0.00 0.00 0.00 5.18
109 110 2.683968 TGAACACGTCCAAGATACTGC 58.316 47.619 0.00 0.00 0.00 4.40
110 111 5.043903 CCTATGAACACGTCCAAGATACTG 58.956 45.833 0.00 0.00 0.00 2.74
111 112 4.954202 TCCTATGAACACGTCCAAGATACT 59.046 41.667 0.00 0.00 0.00 2.12
126 127 4.405680 CCACACACATCCTACTCCTATGAA 59.594 45.833 0.00 0.00 0.00 2.57
129 130 3.309296 CCCACACACATCCTACTCCTAT 58.691 50.000 0.00 0.00 0.00 2.57
164 165 1.822186 GACACACACACACACCCCC 60.822 63.158 0.00 0.00 0.00 5.40
171 172 1.199615 TCCAGGAAGACACACACACA 58.800 50.000 0.00 0.00 0.00 3.72
290 296 5.467705 AGTTGTGGTTGACTAAGATACGAC 58.532 41.667 0.00 0.00 0.00 4.34
293 299 8.997621 TGATTAGTTGTGGTTGACTAAGATAC 57.002 34.615 0.00 0.00 40.51 2.24
322 330 7.360269 CCATTTCATGTATCAAAAACTTGCCAC 60.360 37.037 0.00 0.00 0.00 5.01
364 372 5.971202 ACAACATAACAAGCTCAGAAAAACG 59.029 36.000 0.00 0.00 0.00 3.60
382 391 6.016276 GTCTTTCACCAACCAGATAACAACAT 60.016 38.462 0.00 0.00 0.00 2.71
439 448 7.293073 ACATAAACAGGCTCAAATCCTATCAT 58.707 34.615 0.00 0.00 31.52 2.45
463 477 4.569761 AAGCTCGGAGGAAAAAGAAAAC 57.430 40.909 7.20 0.00 0.00 2.43
546 575 4.759693 TCATTTAGACCGAACAAATGCACT 59.240 37.500 0.00 0.00 38.79 4.40
547 576 5.041951 TCATTTAGACCGAACAAATGCAC 57.958 39.130 0.00 0.00 38.79 4.57
550 580 7.229228 TCGTATCATTTAGACCGAACAAATG 57.771 36.000 0.00 0.00 39.77 2.32
566 596 3.674997 ACACAAACCTTGCTCGTATCAT 58.325 40.909 0.00 0.00 0.00 2.45
581 611 1.626686 ATGAATGGGCCGAACACAAA 58.373 45.000 0.00 0.00 0.00 2.83
689 720 5.239744 GGGATCGAGATATATCATACACGCT 59.760 44.000 15.08 4.47 0.00 5.07
789 855 5.840243 TCTTCGATCCGACCTTAATTGTA 57.160 39.130 0.00 0.00 34.89 2.41
816 10469 5.209977 CCGTGAACGTGATCGAATATCTAA 58.790 41.667 1.75 0.00 40.62 2.10
838 10491 7.656542 CCGAGAAGATTTCCTTATTTAGTACCC 59.343 40.741 0.00 0.00 34.68 3.69
869 10522 2.959516 TGGTAAGAGATTGCTGTGACG 58.040 47.619 0.00 0.00 0.00 4.35
916 10569 4.577096 AGGGGTGGATTTATAGTGGATGA 58.423 43.478 0.00 0.00 0.00 2.92
1147 10817 0.687920 TTGCCCTCATCGTACACCAA 59.312 50.000 0.00 0.00 0.00 3.67
1170 10840 4.699522 GGGAACACCTTCGGCGCT 62.700 66.667 7.64 0.00 35.85 5.92
1248 10918 1.457346 GGTTCATCACCTCCTTGCAG 58.543 55.000 0.00 0.00 43.29 4.41
1273 10943 2.178474 ATGCGCTTGCTAATGAAACG 57.822 45.000 9.73 0.00 40.12 3.60
1275 10945 3.057666 TGTCAATGCGCTTGCTAATGAAA 60.058 39.130 9.73 0.00 40.12 2.69
1281 10951 0.168788 GCTTGTCAATGCGCTTGCTA 59.831 50.000 9.73 0.79 40.12 3.49
1684 11373 2.436542 TCGAACCGAACCCCATATCAAT 59.563 45.455 0.00 0.00 31.06 2.57
2024 11954 9.206121 CAATCAAGCAATTGTCTAGCACGTAGT 62.206 40.741 7.40 0.00 34.65 2.73
2130 12099 5.805994 ACGAATCTTCAACTCGTTTCTATCC 59.194 40.000 0.00 0.00 42.86 2.59
2131 12100 6.872670 ACGAATCTTCAACTCGTTTCTATC 57.127 37.500 0.00 0.00 42.86 2.08
2254 12223 4.462508 TTTCTGAAATTTGTGTGTGGCA 57.537 36.364 0.00 0.00 0.00 4.92
2268 12237 3.133901 TGTAGGGCATCGCTATTTCTGAA 59.866 43.478 0.00 0.00 31.86 3.02
2285 14692 4.744795 ACTAAGGAGAGCACAATGTAGG 57.255 45.455 0.00 0.00 0.00 3.18
2293 14700 4.785511 TGACTACAACTAAGGAGAGCAC 57.214 45.455 0.00 0.00 0.00 4.40
2294 14701 7.561722 AGAATATGACTACAACTAAGGAGAGCA 59.438 37.037 0.00 0.00 0.00 4.26
2295 14702 7.947282 AGAATATGACTACAACTAAGGAGAGC 58.053 38.462 0.00 0.00 0.00 4.09
2315 14722 9.408648 GGAGGATGGTCTGAAAAATAAAGAATA 57.591 33.333 0.00 0.00 0.00 1.75
2316 14723 8.118600 AGGAGGATGGTCTGAAAAATAAAGAAT 58.881 33.333 0.00 0.00 0.00 2.40
2317 14724 7.470192 AGGAGGATGGTCTGAAAAATAAAGAA 58.530 34.615 0.00 0.00 0.00 2.52
2318 14725 7.032598 AGGAGGATGGTCTGAAAAATAAAGA 57.967 36.000 0.00 0.00 0.00 2.52
2319 14726 7.709149 AAGGAGGATGGTCTGAAAAATAAAG 57.291 36.000 0.00 0.00 0.00 1.85
2320 14727 7.508977 ACAAAGGAGGATGGTCTGAAAAATAAA 59.491 33.333 0.00 0.00 0.00 1.40
2321 14728 7.010160 ACAAAGGAGGATGGTCTGAAAAATAA 58.990 34.615 0.00 0.00 0.00 1.40
2322 14729 6.434028 CACAAAGGAGGATGGTCTGAAAAATA 59.566 38.462 0.00 0.00 0.00 1.40
2323 14730 5.244626 CACAAAGGAGGATGGTCTGAAAAAT 59.755 40.000 0.00 0.00 0.00 1.82
2324 14731 4.584325 CACAAAGGAGGATGGTCTGAAAAA 59.416 41.667 0.00 0.00 0.00 1.94
2325 14732 4.144297 CACAAAGGAGGATGGTCTGAAAA 58.856 43.478 0.00 0.00 0.00 2.29
2326 14733 3.754965 CACAAAGGAGGATGGTCTGAAA 58.245 45.455 0.00 0.00 0.00 2.69
2327 14734 2.553028 GCACAAAGGAGGATGGTCTGAA 60.553 50.000 0.00 0.00 0.00 3.02
2328 14735 1.003580 GCACAAAGGAGGATGGTCTGA 59.996 52.381 0.00 0.00 0.00 3.27
2335 14742 1.963985 AGGAGAGCACAAAGGAGGAT 58.036 50.000 0.00 0.00 0.00 3.24
2404 14865 3.638160 AGCAAATGTTGTCATCTTGTGGT 59.362 39.130 0.00 0.00 32.56 4.16
2413 14881 4.216902 CCTCTTGATGAGCAAATGTTGTCA 59.783 41.667 0.00 0.00 41.35 3.58
2480 16555 0.247262 CCATGCGTTCGTCGATGTTG 60.247 55.000 4.21 0.00 42.86 3.33
2481 16556 1.966493 GCCATGCGTTCGTCGATGTT 61.966 55.000 4.21 0.00 42.86 2.71
2493 16568 1.563111 GAATGGATTTGTGCCATGCG 58.437 50.000 0.00 0.00 45.11 4.73
2501 16576 1.322538 GCGCCTGGGAATGGATTTGT 61.323 55.000 0.00 0.00 0.00 2.83
2529 16604 2.046892 AGTGGTGACGCATGGAGC 60.047 61.111 0.00 0.00 45.56 4.70
2538 16613 2.620251 TATATGCTGCCAGTGGTGAC 57.380 50.000 11.74 0.57 0.00 3.67
2545 16620 3.515630 CCGTGTCTATATATGCTGCCAG 58.484 50.000 0.00 0.00 0.00 4.85
2603 16679 0.478072 ACCATGTCAAGCCAACCTCA 59.522 50.000 0.00 0.00 0.00 3.86
2609 16685 0.321919 GAGCTCACCATGTCAAGCCA 60.322 55.000 9.40 0.00 35.32 4.75
2663 16739 1.609061 CCAGAGAAGTTGGCACGACAT 60.609 52.381 0.00 0.00 0.00 3.06
2664 16740 0.249868 CCAGAGAAGTTGGCACGACA 60.250 55.000 0.00 0.00 0.00 4.35
2674 16750 4.652881 TCATCATATCACTGCCAGAGAAGT 59.347 41.667 0.00 0.00 0.00 3.01
2706 17498 2.200373 AACCCCAAATCGAAGGACTG 57.800 50.000 3.72 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.