Multiple sequence alignment - TraesCS7D01G550300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G550300 chr7D 100.000 3582 0 0 1 3582 634649677 634653258 0.000000e+00 6615.0
1 TraesCS7D01G550300 chr7D 84.666 1989 249 29 716 2682 583548298 583550252 0.000000e+00 1932.0
2 TraesCS7D01G550300 chr7D 90.052 573 35 5 1 554 634643357 634643926 0.000000e+00 723.0
3 TraesCS7D01G550300 chr7D 82.240 884 99 30 2723 3582 583550255 583551104 0.000000e+00 710.0
4 TraesCS7D01G550300 chr7D 84.155 568 65 13 2722 3279 634759585 634759033 8.810000e-146 527.0
5 TraesCS7D01G550300 chr7A 94.289 3607 130 29 1 3582 731572388 731568833 0.000000e+00 5450.0
6 TraesCS7D01G550300 chr7A 87.931 1682 181 8 953 2624 675021880 675023549 0.000000e+00 1962.0
7 TraesCS7D01G550300 chr7A 85.654 1659 180 33 1000 2614 731000689 731002333 0.000000e+00 1692.0
8 TraesCS7D01G550300 chr7A 81.198 1085 166 25 1378 2460 731774521 731773473 0.000000e+00 839.0
9 TraesCS7D01G550300 chr7A 82.303 825 97 26 2723 3527 675023585 675024380 0.000000e+00 669.0
10 TraesCS7D01G550300 chr7A 82.360 805 90 28 2723 3505 675026341 675027115 0.000000e+00 652.0
11 TraesCS7D01G550300 chr7A 81.530 758 95 29 2806 3545 731012490 731013220 1.850000e-162 582.0
12 TraesCS7D01G550300 chr7A 88.095 462 50 3 999 1456 730881201 730881661 8.750000e-151 544.0
13 TraesCS7D01G550300 chr7A 82.206 680 58 25 2925 3582 730883154 730883792 8.810000e-146 527.0
14 TraesCS7D01G550300 chr7A 78.837 808 91 40 2806 3580 731221351 731222111 4.190000e-129 472.0
15 TraesCS7D01G550300 chr7A 78.652 534 64 30 3080 3580 731188523 731189039 3.470000e-80 309.0
16 TraesCS7D01G550300 chr7A 78.464 534 65 30 3080 3580 731159561 731160077 1.620000e-78 303.0
17 TraesCS7D01G550300 chr7A 78.277 534 66 30 3080 3580 731129857 731130373 7.520000e-77 298.0
18 TraesCS7D01G550300 chr7A 85.227 88 8 4 2850 2937 726431860 726431778 6.370000e-13 86.1
19 TraesCS7D01G550300 chr7B 93.573 1556 82 10 1003 2546 741624973 741623424 0.000000e+00 2303.0
20 TraesCS7D01G550300 chr7B 83.372 1281 198 9 1406 2682 651134870 651136139 0.000000e+00 1171.0
21 TraesCS7D01G550300 chr7B 85.830 1108 133 10 1562 2663 741482663 741483752 0.000000e+00 1155.0
22 TraesCS7D01G550300 chr7B 85.356 997 134 7 1553 2546 741541920 741542907 0.000000e+00 1022.0
23 TraesCS7D01G550300 chr7B 79.696 1054 179 16 1653 2682 741668235 741667193 0.000000e+00 728.0
24 TraesCS7D01G550300 chr7B 89.567 508 31 10 955 1446 741541408 741541909 3.040000e-175 625.0
25 TraesCS7D01G550300 chr7B 92.784 388 22 2 1070 1451 741482195 741482582 1.120000e-154 556.0
26 TraesCS7D01G550300 chr7B 83.471 605 59 24 2995 3582 741483934 741484514 3.170000e-145 525.0
27 TraesCS7D01G550300 chr7B 84.633 436 44 10 2806 3230 741623425 741623002 2.570000e-111 412.0
28 TraesCS7D01G550300 chr7B 89.450 218 15 6 2790 3006 651141917 651142127 5.890000e-68 268.0
29 TraesCS7D01G550300 chr7B 86.264 182 21 4 2819 3000 741666964 741666787 1.010000e-45 195.0
30 TraesCS7D01G550300 chr7B 98.077 52 0 1 952 1003 741539904 741539954 4.930000e-14 89.8
31 TraesCS7D01G550300 chr4B 86.590 1566 169 15 996 2546 625072802 625074341 0.000000e+00 1690.0
32 TraesCS7D01G550300 chr4B 80.470 809 97 29 2806 3581 625074473 625075253 2.410000e-156 562.0
33 TraesCS7D01G550300 chr3B 100.000 29 0 0 2699 2727 448587212 448587240 2.000000e-03 54.7
34 TraesCS7D01G550300 chr4D 100.000 28 0 0 2698 2725 342548777 342548750 6.000000e-03 52.8
35 TraesCS7D01G550300 chr4A 92.105 38 2 1 2688 2725 123896773 123896809 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G550300 chr7D 634649677 634653258 3581 False 6615.000000 6615 100.000000 1 3582 1 chr7D.!!$F2 3581
1 TraesCS7D01G550300 chr7D 583548298 583551104 2806 False 1321.000000 1932 83.453000 716 3582 2 chr7D.!!$F3 2866
2 TraesCS7D01G550300 chr7D 634643357 634643926 569 False 723.000000 723 90.052000 1 554 1 chr7D.!!$F1 553
3 TraesCS7D01G550300 chr7D 634759033 634759585 552 True 527.000000 527 84.155000 2722 3279 1 chr7D.!!$R1 557
4 TraesCS7D01G550300 chr7A 731568833 731572388 3555 True 5450.000000 5450 94.289000 1 3582 1 chr7A.!!$R2 3581
5 TraesCS7D01G550300 chr7A 731000689 731002333 1644 False 1692.000000 1692 85.654000 1000 2614 1 chr7A.!!$F1 1614
6 TraesCS7D01G550300 chr7A 675021880 675027115 5235 False 1094.333333 1962 84.198000 953 3527 3 chr7A.!!$F7 2574
7 TraesCS7D01G550300 chr7A 731773473 731774521 1048 True 839.000000 839 81.198000 1378 2460 1 chr7A.!!$R3 1082
8 TraesCS7D01G550300 chr7A 731012490 731013220 730 False 582.000000 582 81.530000 2806 3545 1 chr7A.!!$F2 739
9 TraesCS7D01G550300 chr7A 730881201 730883792 2591 False 535.500000 544 85.150500 999 3582 2 chr7A.!!$F8 2583
10 TraesCS7D01G550300 chr7A 731221351 731222111 760 False 472.000000 472 78.837000 2806 3580 1 chr7A.!!$F6 774
11 TraesCS7D01G550300 chr7A 731188523 731189039 516 False 309.000000 309 78.652000 3080 3580 1 chr7A.!!$F5 500
12 TraesCS7D01G550300 chr7A 731159561 731160077 516 False 303.000000 303 78.464000 3080 3580 1 chr7A.!!$F4 500
13 TraesCS7D01G550300 chr7A 731129857 731130373 516 False 298.000000 298 78.277000 3080 3580 1 chr7A.!!$F3 500
14 TraesCS7D01G550300 chr7B 741623002 741624973 1971 True 1357.500000 2303 89.103000 1003 3230 2 chr7B.!!$R1 2227
15 TraesCS7D01G550300 chr7B 651134870 651136139 1269 False 1171.000000 1171 83.372000 1406 2682 1 chr7B.!!$F1 1276
16 TraesCS7D01G550300 chr7B 741482195 741484514 2319 False 745.333333 1155 87.361667 1070 3582 3 chr7B.!!$F3 2512
17 TraesCS7D01G550300 chr7B 741539904 741542907 3003 False 578.933333 1022 91.000000 952 2546 3 chr7B.!!$F4 1594
18 TraesCS7D01G550300 chr7B 741666787 741668235 1448 True 461.500000 728 82.980000 1653 3000 2 chr7B.!!$R2 1347
19 TraesCS7D01G550300 chr4B 625072802 625075253 2451 False 1126.000000 1690 83.530000 996 3581 2 chr4B.!!$F1 2585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.038618 ACACGTTAGCGAGCACATCA 60.039 50.0 5.81 0.0 42.0 3.07 F
471 472 0.536460 CACCCACCAAAACCGCTACT 60.536 55.0 0.00 0.0 0.0 2.57 F
1799 3482 0.249120 TCCCGTCCACAACTATGCAG 59.751 55.0 0.00 0.0 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 3482 0.386113 GAGGCTCGACCATAGACCAC 59.614 60.000 0.00 0.0 43.14 4.16 R
2195 3953 2.797177 AGAACAAGAATCCCTCAGCC 57.203 50.000 0.00 0.0 0.00 4.85 R
2647 4416 2.485814 AGCGTGAAAGCCATTTTCTCTC 59.514 45.455 1.88 0.0 44.49 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.249322 CCACCACTACCGCCGATAAG 60.249 60.000 0.00 0.00 0.00 1.73
58 59 1.067776 CCACTACCGCCGATAAGATCC 60.068 57.143 0.00 0.00 0.00 3.36
115 116 0.249699 TCACGCATCTGTCCAACGTT 60.250 50.000 0.00 0.00 34.19 3.99
116 117 0.110688 CACGCATCTGTCCAACGTTG 60.111 55.000 21.47 21.47 34.19 4.10
180 181 1.101049 ACCACCTTTGCACCTGAACG 61.101 55.000 0.00 0.00 0.00 3.95
192 193 2.515757 TGAACGCCAGCAACAGCA 60.516 55.556 0.00 0.00 0.00 4.41
193 194 2.253452 GAACGCCAGCAACAGCAG 59.747 61.111 0.00 0.00 0.00 4.24
194 195 3.886329 GAACGCCAGCAACAGCAGC 62.886 63.158 0.00 0.00 0.00 5.25
211 212 2.279517 CGGGCAGCATCGTAGACC 60.280 66.667 0.00 0.00 42.51 3.85
212 213 2.900273 GGGCAGCATCGTAGACCA 59.100 61.111 0.00 0.00 42.51 4.02
213 214 1.521681 GGGCAGCATCGTAGACCAC 60.522 63.158 0.00 0.00 42.51 4.16
214 215 1.521681 GGCAGCATCGTAGACCACC 60.522 63.158 0.00 0.00 42.51 4.61
215 216 1.521681 GCAGCATCGTAGACCACCC 60.522 63.158 0.00 0.00 42.51 4.61
256 257 2.092374 CACCGGTGCATGTCATCTG 58.908 57.895 24.02 0.00 0.00 2.90
285 286 1.339610 CAGGATCTAGCCGGAACTCAG 59.660 57.143 5.05 0.00 0.00 3.35
292 293 1.218316 GCCGGAACTCAGTCGGATT 59.782 57.895 5.05 0.00 45.96 3.01
303 304 4.142138 ACTCAGTCGGATTTACCATCTCAC 60.142 45.833 0.00 0.00 38.90 3.51
319 320 0.949397 TCACTATGGCTACGCTACCG 59.051 55.000 0.00 0.00 41.14 4.02
341 342 0.389025 GAAACCACCACCAAAGGCTG 59.611 55.000 0.00 0.00 0.00 4.85
353 354 2.821378 CCAAAGGCTGACATGATGTTGA 59.179 45.455 0.00 0.00 0.00 3.18
381 382 1.416434 GCGAGCTCAACACGTTAGC 59.584 57.895 15.40 1.33 34.56 3.09
385 386 1.416434 GCTCAACACGTTAGCGAGC 59.584 57.895 5.81 9.46 41.98 5.03
390 391 1.068474 AACACGTTAGCGAGCACATC 58.932 50.000 5.81 0.00 42.00 3.06
391 392 0.038618 ACACGTTAGCGAGCACATCA 60.039 50.000 5.81 0.00 42.00 3.07
392 393 0.642291 CACGTTAGCGAGCACATCAG 59.358 55.000 5.81 0.00 42.00 2.90
418 419 2.133195 CCCTTGTAGGCTGCCGATA 58.867 57.895 13.96 3.09 32.73 2.92
426 427 1.450312 GGCTGCCGATACTGCAACT 60.450 57.895 1.35 0.00 38.46 3.16
471 472 0.536460 CACCCACCAAAACCGCTACT 60.536 55.000 0.00 0.00 0.00 2.57
498 499 1.502640 CGTCGAGTCACCAGAGGAC 59.497 63.158 0.00 0.00 35.50 3.85
717 718 7.881775 AACTTTTATGGAGCCGAGAATTAAT 57.118 32.000 0.00 0.00 0.00 1.40
722 723 9.567776 TTTTATGGAGCCGAGAATTAATTATGA 57.432 29.630 0.00 0.00 0.00 2.15
993 2512 3.749064 GCTCACTCGTCGCTCCCA 61.749 66.667 0.00 0.00 0.00 4.37
1026 2546 1.144057 CGATCCCCTTTCTCCACCG 59.856 63.158 0.00 0.00 0.00 4.94
1238 2767 2.125552 CTCGGCTTCATGGACGCA 60.126 61.111 0.00 0.00 37.68 5.24
1361 2893 3.224324 GCCTCCTACATCCCGCGA 61.224 66.667 8.23 0.00 0.00 5.87
1376 2911 2.579201 CGAGGTGTCCAAGCCGAT 59.421 61.111 0.00 0.00 0.00 4.18
1799 3482 0.249120 TCCCGTCCACAACTATGCAG 59.751 55.000 0.00 0.00 0.00 4.41
1893 3630 4.500716 GCTTCTACTGGACAGAGCCTTATC 60.501 50.000 6.29 0.00 0.00 1.75
2159 3917 0.684479 AGGTCATACAGCTGCCTCGA 60.684 55.000 15.27 2.33 0.00 4.04
2162 3920 0.894835 TCATACAGCTGCCTCGACAA 59.105 50.000 15.27 0.00 0.00 3.18
2195 3953 1.580942 CATTTCCACAGTGGGTGCG 59.419 57.895 20.14 2.82 46.50 5.34
2282 4040 4.574674 TTGCTACTCAATGGAGGTCAAT 57.425 40.909 1.23 0.00 45.81 2.57
2416 4175 8.276252 TCAACTGGTAAGCCTAATTATTTCAC 57.724 34.615 0.00 0.00 35.27 3.18
2502 4267 6.757897 TTATTGTTCTATTGGGCTTGACTG 57.242 37.500 0.00 0.00 0.00 3.51
2635 4404 7.323420 ACTTTGGAAAGCTAATATCTTTTGCC 58.677 34.615 0.00 0.00 39.63 4.52
2686 4455 6.715464 TCACGCTTGCTTCTTTATATTTAGC 58.285 36.000 0.00 0.00 0.00 3.09
3343 8604 6.450545 TCATTTAATTCAACGGCAATGTTCA 58.549 32.000 0.00 0.00 0.00 3.18
3413 8701 6.036470 TGAGTCTTGTATTTATGAGCACTCG 58.964 40.000 0.00 0.00 32.13 4.18
3414 8702 6.127730 TGAGTCTTGTATTTATGAGCACTCGA 60.128 38.462 0.00 0.00 32.13 4.04
3416 8704 7.268586 AGTCTTGTATTTATGAGCACTCGATT 58.731 34.615 0.00 0.00 0.00 3.34
3418 8706 9.031360 GTCTTGTATTTATGAGCACTCGATTTA 57.969 33.333 0.00 0.00 0.00 1.40
3419 8707 9.031360 TCTTGTATTTATGAGCACTCGATTTAC 57.969 33.333 0.00 0.00 0.00 2.01
3420 8708 7.709269 TGTATTTATGAGCACTCGATTTACC 57.291 36.000 0.00 0.00 0.00 2.85
3437 8729 8.723311 TCGATTTACCGTTATGTTTTCAAGAAT 58.277 29.630 0.00 0.00 0.00 2.40
3541 8864 5.888161 CCCCTTTGTTCTTGAGCTATATTGT 59.112 40.000 0.00 0.00 0.00 2.71
3543 8866 7.012421 CCCCTTTGTTCTTGAGCTATATTGTAC 59.988 40.741 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.971959 TTATCGGCGGTAGTGGTGGT 60.972 55.000 7.21 0.00 0.00 4.16
54 55 1.524849 GAGAAAGCCCGCCTGGATC 60.525 63.158 0.00 0.00 37.49 3.36
58 59 1.144936 CTAGGAGAAAGCCCGCCTG 59.855 63.158 0.00 0.00 36.96 4.85
115 116 4.338710 GTAGGGTTGTGCGGGCCA 62.339 66.667 4.39 0.00 0.00 5.36
192 193 3.147595 TCTACGATGCTGCCCGCT 61.148 61.111 10.66 2.88 40.11 5.52
193 194 2.962253 GTCTACGATGCTGCCCGC 60.962 66.667 10.66 0.00 39.77 6.13
194 195 2.279517 GGTCTACGATGCTGCCCG 60.280 66.667 9.44 9.44 0.00 6.13
195 196 1.521681 GTGGTCTACGATGCTGCCC 60.522 63.158 0.00 0.00 0.00 5.36
196 197 1.521681 GGTGGTCTACGATGCTGCC 60.522 63.158 0.00 0.00 0.00 4.85
197 198 1.521681 GGGTGGTCTACGATGCTGC 60.522 63.158 0.00 0.00 0.00 5.25
198 199 0.460284 GTGGGTGGTCTACGATGCTG 60.460 60.000 0.00 0.00 0.00 4.41
199 200 1.614241 GGTGGGTGGTCTACGATGCT 61.614 60.000 0.00 0.00 0.00 3.79
200 201 1.153429 GGTGGGTGGTCTACGATGC 60.153 63.158 0.00 0.00 0.00 3.91
201 202 1.141019 CGGTGGGTGGTCTACGATG 59.859 63.158 0.00 0.00 0.00 3.84
202 203 2.718073 GCGGTGGGTGGTCTACGAT 61.718 63.158 0.00 0.00 0.00 3.73
203 204 3.376078 GCGGTGGGTGGTCTACGA 61.376 66.667 0.00 0.00 0.00 3.43
204 205 4.446413 GGCGGTGGGTGGTCTACG 62.446 72.222 0.00 0.00 0.00 3.51
205 206 3.310860 CTGGCGGTGGGTGGTCTAC 62.311 68.421 0.00 0.00 0.00 2.59
206 207 3.000819 CTGGCGGTGGGTGGTCTA 61.001 66.667 0.00 0.00 0.00 2.59
209 210 4.966274 TACCTGGCGGTGGGTGGT 62.966 66.667 10.60 0.00 45.18 4.16
210 211 4.096003 CTACCTGGCGGTGGGTGG 62.096 72.222 10.60 0.47 45.18 4.61
211 212 4.778143 GCTACCTGGCGGTGGGTG 62.778 72.222 10.60 1.53 45.18 4.61
213 214 2.363975 TTAGCTACCTGGCGGTGGG 61.364 63.158 10.60 5.49 45.18 4.61
214 215 1.153429 GTTAGCTACCTGGCGGTGG 60.153 63.158 10.60 8.92 45.18 4.61
215 216 1.518572 CGTTAGCTACCTGGCGGTG 60.519 63.158 10.60 3.43 45.18 4.94
285 286 5.230942 CCATAGTGAGATGGTAAATCCGAC 58.769 45.833 0.00 0.00 41.42 4.79
319 320 0.389025 CCTTTGGTGGTGGTTTCTGC 59.611 55.000 0.00 0.00 0.00 4.26
341 342 3.547413 CCATCACGCATCAACATCATGTC 60.547 47.826 0.00 0.00 0.00 3.06
353 354 2.587194 GAGCTCGCCATCACGCAT 60.587 61.111 0.00 0.00 0.00 4.73
381 382 1.226802 CCTCGACCTGATGTGCTCG 60.227 63.158 0.00 0.00 0.00 5.03
385 386 1.903877 AAGGGCCTCGACCTGATGTG 61.904 60.000 6.46 0.00 42.44 3.21
390 391 1.517832 CTACAAGGGCCTCGACCTG 59.482 63.158 6.46 2.96 42.44 4.00
392 393 2.901042 CCTACAAGGGCCTCGACC 59.099 66.667 6.46 0.00 0.00 4.79
418 419 1.000955 CCGTCTACTTGGAGTTGCAGT 59.999 52.381 0.00 0.00 0.00 4.40
426 427 0.675083 TTTGCGTCCGTCTACTTGGA 59.325 50.000 0.00 0.00 0.00 3.53
471 472 1.001764 TGACTCGACGGCTTCCCTA 60.002 57.895 0.00 0.00 0.00 3.53
504 505 2.520741 CCCCTTTGGTTGCACGGT 60.521 61.111 0.00 0.00 0.00 4.83
589 590 1.613437 GCCAAATGGGACGATATTGGG 59.387 52.381 0.90 0.00 40.65 4.12
687 688 5.642063 TCTCGGCTCCATAAAAGTTAGTTTG 59.358 40.000 0.00 0.00 0.00 2.93
717 718 9.781633 TGTAAAGTGTAGTTTAAAGCCTCATAA 57.218 29.630 0.00 0.00 0.00 1.90
722 723 7.771826 TGAACTGTAAAGTGTAGTTTAAAGCCT 59.228 33.333 8.61 0.00 32.41 4.58
993 2512 0.181350 GATCGAGGGTTTGGGATGCT 59.819 55.000 0.00 0.00 0.00 3.79
1361 2893 2.671070 CCATCGGCTTGGACACCT 59.329 61.111 0.00 0.00 39.25 4.00
1364 2896 2.196997 CTTCCCCATCGGCTTGGACA 62.197 60.000 5.03 0.00 39.25 4.02
1550 3233 4.243008 TTGCACCGCTCCCGTTCA 62.243 61.111 0.00 0.00 0.00 3.18
1615 3298 0.676466 TATGGTTGGAAGCAGCACGG 60.676 55.000 0.00 0.00 40.07 4.94
1799 3482 0.386113 GAGGCTCGACCATAGACCAC 59.614 60.000 0.00 0.00 43.14 4.16
2159 3917 9.071276 GTGGAAATGGAATAGTCATGATATTGT 57.929 33.333 0.00 0.00 0.00 2.71
2162 3920 8.443176 ACTGTGGAAATGGAATAGTCATGATAT 58.557 33.333 0.00 0.00 0.00 1.63
2195 3953 2.797177 AGAACAAGAATCCCTCAGCC 57.203 50.000 0.00 0.00 0.00 4.85
2282 4040 9.826574 GTACAGACTTTGGTAATTCCATATGTA 57.173 33.333 1.24 0.73 46.60 2.29
2502 4267 1.749634 TCCTAGCTAGTTTGACGAGGC 59.250 52.381 19.31 0.00 0.00 4.70
2635 4404 7.173722 AGCCATTTTCTCTCATAAGATATGGG 58.826 38.462 13.19 0.00 37.81 4.00
2647 4416 2.485814 AGCGTGAAAGCCATTTTCTCTC 59.514 45.455 1.88 0.00 44.49 3.20
2704 4473 7.735326 AGATGTACTCCCACTGTAAACTAAT 57.265 36.000 0.00 0.00 0.00 1.73
3075 4845 7.108841 AGTCAAGCCGAATAGAACAGTAATA 57.891 36.000 0.00 0.00 0.00 0.98
3090 4860 3.564225 AGTTTGAAAAGGTAGTCAAGCCG 59.436 43.478 0.00 0.00 36.08 5.52
3205 8336 5.752955 GCAACAAAGATTAGCTTTCCAAACA 59.247 36.000 0.00 0.00 44.83 2.83
3343 8604 9.206870 CACTGGTTATGCAACATTCTTATTTTT 57.793 29.630 0.00 0.00 36.29 1.94
3416 8704 9.932207 TCTCTATTCTTGAAAACATAACGGTAA 57.068 29.630 0.00 0.00 0.00 2.85
3418 8706 9.449719 AATCTCTATTCTTGAAAACATAACGGT 57.550 29.630 0.00 0.00 0.00 4.83
3419 8707 9.708222 CAATCTCTATTCTTGAAAACATAACGG 57.292 33.333 0.00 0.00 0.00 4.44
3437 8729 6.377429 AGACCATAACAGACGAACAATCTCTA 59.623 38.462 0.00 0.00 0.00 2.43
3443 8735 3.064207 GCAGACCATAACAGACGAACAA 58.936 45.455 0.00 0.00 0.00 2.83
3491 8783 2.628178 AGCTGCCGTAGTATATTGCAGA 59.372 45.455 13.46 0.00 45.29 4.26
3541 8864 5.359756 CATGTGCTAAATGGCAGAGTAGTA 58.640 41.667 0.00 0.00 43.25 1.82
3543 8866 3.003068 GCATGTGCTAAATGGCAGAGTAG 59.997 47.826 0.00 0.00 43.25 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.