AutoCloner

Multiple sequence alignment - TraesCS7D01G550100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G550100	chr7D	100.000	2810	0	0	1	2810	634573877	634576686	0.000000e+00	5190.0
1	TraesCS7D01G550100	chr7D	80.023	1742	284	43	961	2659	583548565	583550285	0.000000e+00	1230.0
2	TraesCS7D01G550100	chr7D	79.706	1700	284	36	968	2626	634650679	634652358	0.000000e+00	1171.0
3	TraesCS7D01G550100	chr7D	79.931	1450	246	32	1029	2451	634659589	634661020	0.000000e+00	1024.0
4	TraesCS7D01G550100	chr7D	83.654	624	81	10	2066	2677	630482170	630481556	4.840000e-158	568.0
5	TraesCS7D01G550100	chr7D	100.000	254	0	0	3088	3341	634576964	634577217	1.400000e-128	470.0
6	TraesCS7D01G550100	chr7D	77.916	643	122	15	1	633	605638979	605639611	1.880000e-102	383.0
7	TraesCS7D01G550100	chr7D	77.760	643	123	15	1	633	605633176	605633808	8.750000e-101	377.0
8	TraesCS7D01G550100	chr7D	77.535	641	126	13	1	632	605589222	605589853	1.460000e-98	370.0
9	TraesCS7D01G550100	chr7D	89.212	241	26	0	3101	3341	634566511	634566751	5.420000e-78	302.0
10	TraesCS7D01G550100	chr7D	87.166	187	24	0	3104	3290	630478994	630478808	2.610000e-51	213.0
11	TraesCS7D01G550100	chr7B	94.699	2811	138	5	2	2810	741642518	741639717	0.000000e+00	4355.0
12	TraesCS7D01G550100	chr7B	79.376	1154	205	21	1521	2659	741482663	741483798	0.000000e+00	782.0
13	TraesCS7D01G550100	chr7B	78.537	1244	224	28	1018	2249	703939514	703938302	0.000000e+00	778.0
14	TraesCS7D01G550100	chr7B	78.749	1167	219	24	1495	2641	651135000	651136157	0.000000e+00	754.0
15	TraesCS7D01G550100	chr7B	79.527	972	186	8	1507	2470	741541915	741542881	0.000000e+00	680.0
16	TraesCS7D01G550100	chr7B	88.514	296	32	2	1018	1312	741541516	741541810	1.140000e-94	357.0
17	TraesCS7D01G550100	chr7B	93.671	237	14	1	3105	3341	741639431	741639196	1.470000e-93	353.0
18	TraesCS7D01G550100	chr7A	94.496	2471	113	17	246	2705	731679913	731677455	0.000000e+00	3788.0
19	TraesCS7D01G550100	chr7A	84.203	1494	219	13	1021	2504	731743631	731742145	0.000000e+00	1435.0
20	TraesCS7D01G550100	chr7A	79.725	1889	319	45	952	2810	726431354	726429500	0.000000e+00	1308.0
21	TraesCS7D01G550100	chr7A	80.692	1647	265	34	959	2573	675021924	675023549	0.000000e+00	1230.0
22	TraesCS7D01G550100	chr7A	79.263	1683	288	36	968	2609	731571401	731569739	0.000000e+00	1118.0
23	TraesCS7D01G550100	chr7A	83.638	1204	172	17	1450	2640	731615962	731614771	0.000000e+00	1109.0
24	TraesCS7D01G550100	chr7A	79.615	1143	178	31	1509	2618	731634494	731633374	0.000000e+00	769.0
25	TraesCS7D01G550100	chr7A	83.951	729	88	19	667	1393	731616660	731615959	0.000000e+00	671.0
26	TraesCS7D01G550100	chr7A	80.226	531	78	14	955	1459	730881192	730881721	1.130000e-99	374.0
27	TraesCS7D01G550100	chr7A	97.260	219	6	0	1	219	731680129	731679911	4.070000e-99	372.0
28	TraesCS7D01G550100	chr7A	91.221	262	15	6	3088	3341	731674265	731674004	1.910000e-92	350.0
29	TraesCS7D01G550100	chr7A	90.336	238	23	0	3104	3341	731633115	731632878	2.500000e-81	313.0
30	TraesCS7D01G550100	chr7A	89.076	238	26	0	3104	3341	731686777	731686540	2.520000e-76	296.0
31	TraesCS7D01G550100	chr7A	85.714	238	30	3	3104	3341	731613380	731613147	7.160000e-62	248.0
32	TraesCS7D01G550100	chr7A	86.631	187	25	0	3104	3290	726429352	726429166	1.210000e-49	207.0
33	TraesCS7D01G550100	chr7A	95.455	110	5	0	2701	2810	731674391	731674282	3.430000e-40	176.0
34	TraesCS7D01G550100	chr7A	79.681	251	40	8	2438	2677	726432153	726431903	1.590000e-38	171.0
35	TraesCS7D01G550100	chr5D	80.218	642	107	17	1	633	432979549	432978919	6.530000e-127	464.0
36	TraesCS7D01G550100	chrUn	70.963	644	161	19	2	633	21284750	21285379	2.710000e-26	130.0
37	TraesCS7D01G550100	chrUn	76.259	139	18	11	758	891	124524255	124524383	3.600000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G550100	chr7D	634573877	634577217	3340	False	2830.0	5190	100.000000	1	3341	2	chr7D.!!$F8	3340
1	TraesCS7D01G550100	chr7D	583548565	583550285	1720	False	1230.0	1230	80.023000	961	2659	1	chr7D.!!$F1	1698
2	TraesCS7D01G550100	chr7D	634650679	634652358	1679	False	1171.0	1171	79.706000	968	2626	1	chr7D.!!$F6	1658
3	TraesCS7D01G550100	chr7D	634659589	634661020	1431	False	1024.0	1024	79.931000	1029	2451	1	chr7D.!!$F7	1422
4	TraesCS7D01G550100	chr7D	630478808	630482170	3362	True	390.5	568	85.410000	2066	3290	2	chr7D.!!$R1	1224
5	TraesCS7D01G550100	chr7D	605638979	605639611	632	False	383.0	383	77.916000	1	633	1	chr7D.!!$F4	632
6	TraesCS7D01G550100	chr7D	605633176	605633808	632	False	377.0	377	77.760000	1	633	1	chr7D.!!$F3	632
7	TraesCS7D01G550100	chr7D	605589222	605589853	631	False	370.0	370	77.535000	1	632	1	chr7D.!!$F2	631
8	TraesCS7D01G550100	chr7B	741639196	741642518	3322	True	2354.0	4355	94.185000	2	3341	2	chr7B.!!$R2	3339
9	TraesCS7D01G550100	chr7B	741482663	741483798	1135	False	782.0	782	79.376000	1521	2659	1	chr7B.!!$F2	1138
10	TraesCS7D01G550100	chr7B	703938302	703939514	1212	True	778.0	778	78.537000	1018	2249	1	chr7B.!!$R1	1231
11	TraesCS7D01G550100	chr7B	651135000	651136157	1157	False	754.0	754	78.749000	1495	2641	1	chr7B.!!$F1	1146
12	TraesCS7D01G550100	chr7B	741541516	741542881	1365	False	518.5	680	84.020500	1018	2470	2	chr7B.!!$F3	1452
13	TraesCS7D01G550100	chr7A	731742145	731743631	1486	True	1435.0	1435	84.203000	1021	2504	1	chr7A.!!$R3	1483
14	TraesCS7D01G550100	chr7A	675021924	675023549	1625	False	1230.0	1230	80.692000	959	2573	1	chr7A.!!$F1	1614
15	TraesCS7D01G550100	chr7A	731674004	731680129	6125	True	1171.5	3788	94.608000	1	3341	4	chr7A.!!$R7	3340
16	TraesCS7D01G550100	chr7A	731569739	731571401	1662	True	1118.0	1118	79.263000	968	2609	1	chr7A.!!$R1	1641
17	TraesCS7D01G550100	chr7A	731613147	731616660	3513	True	676.0	1109	84.434333	667	3341	3	chr7A.!!$R5	2674
18	TraesCS7D01G550100	chr7A	726429166	726432153	2987	True	562.0	1308	82.012333	952	3290	3	chr7A.!!$R4	2338
19	TraesCS7D01G550100	chr7A	731632878	731634494	1616	True	541.0	769	84.975500	1509	3341	2	chr7A.!!$R6	1832
20	TraesCS7D01G550100	chr7A	730881192	730881721	529	False	374.0	374	80.226000	955	1459	1	chr7A.!!$F2	504
21	TraesCS7D01G550100	chr5D	432978919	432979549	630	True	464.0	464	80.218000	1	633	1	chr5D.!!$R1	632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
943	954	0.681564	CACTCACTAGTCGCTCCCCT	60.682	60.000	0.0	0.0	31.97	4.79	F
1790	1845	1.229658	AGTCCCCTGTCCTCCCTTG	60.230	63.158	0.0	0.0	0.00	3.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1984	2039	0.035343	GCTCCTTCCCTACCCACAAC	60.035	60.000	0.0	0.0	0.0	3.32	R
3224	7741	2.569059	CACCATCTTGATCATTCGCCT	58.431	47.619	0.0	0.0	0.0	5.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
168	172	5.106673	GCTGGTAGACCAAAATACTTGTCAC	60.107	44.000	2.42	0.00	46.97	3.67
189	193	5.767665	TCACTGAGAGCCTCTATCAAGATAC	59.232	44.000	0.00	0.00	31.14	2.24
190	194	5.048083	CACTGAGAGCCTCTATCAAGATACC	60.048	48.000	0.00	0.00	31.14	2.73
303	308	4.036352	GCGACACAATACAAAACCGAAAA	58.964	39.130	0.00	0.00	0.00	2.29
345	350	2.510615	CGAAGGTTCGCTTTCATGAC	57.489	50.000	0.00	0.00	44.26	3.06
403	408	1.574263	GGGGAGCCTCTCTACAAACT	58.426	55.000	0.00	0.00	0.00	2.66
446	451	1.534163	CATTATCCTCTGCATGTGCCG	59.466	52.381	2.07	0.00	41.18	5.69
648	657	7.301054	CAAGTTTCAAGACCTAAGCTAACATG	58.699	38.462	0.00	0.00	0.00	3.21
815	825	7.916914	AGGAACATAATTTAGCGTTAGTGTT	57.083	32.000	0.00	0.00	0.00	3.32
943	954	0.681564	CACTCACTAGTCGCTCCCCT	60.682	60.000	0.00	0.00	31.97	4.79
1035	1052	4.523282	GCCTCCATCCCCCTCCCT	62.523	72.222	0.00	0.00	0.00	4.20
1044	1061	2.450320	CCCCCTCCCTGATGAGCTG	61.450	68.421	0.00	0.00	0.00	4.24
1045	1062	1.692042	CCCCTCCCTGATGAGCTGT	60.692	63.158	0.00	0.00	0.00	4.40
1686	1741	3.005684	GTGATGAGAGCGAGGAGAATCAT	59.994	47.826	0.00	0.00	36.25	2.45
1731	1786	5.635120	AGATACCTGAAAAAGCTTGTCCTT	58.365	37.500	0.00	0.00	0.00	3.36
1771	1826	5.581126	AACTATGCAATGGTGTATGGTTG	57.419	39.130	5.90	0.00	45.38	3.77
1790	1845	1.229658	AGTCCCCTGTCCTCCCTTG	60.230	63.158	0.00	0.00	0.00	3.61
1823	1878	5.637810	ACATGTCCTATTTTGACTGTGTACG	59.362	40.000	0.00	0.00	33.60	3.67
1886	1941	6.680810	ACAATTTGATGGTACTTGACACATG	58.319	36.000	2.79	0.00	0.00	3.21
1905	1960	4.160252	ACATGCACTTTGAGGTTTTCAGTT	59.840	37.500	0.00	0.00	37.07	3.16
1911	1966	6.332630	CACTTTGAGGTTTTCAGTTGTCAAT	58.667	36.000	0.00	0.00	37.07	2.57
1933	1988	1.271856	TTTCACCGGCTACCATCTGA	58.728	50.000	0.00	0.00	0.00	3.27
1954	2009	2.588620	AGCTCAGAGATACTTACCCGG	58.411	52.381	0.00	0.00	0.00	5.73
1956	2011	1.614413	CTCAGAGATACTTACCCGGGC	59.386	57.143	24.08	1.13	0.00	6.13
1962	2017	3.113043	AGATACTTACCCGGGCTTTCTT	58.887	45.455	24.08	1.22	0.00	2.52
1972	2027	2.727684	GGCTTTCTTCGTCGGCGTC	61.728	63.158	10.18	0.00	39.49	5.19
1984	2039	2.480555	GGCGTCCGAATGCAGTTG	59.519	61.111	0.00	0.00	39.30	3.16
1990	2045	0.950836	TCCGAATGCAGTTGTTGTGG	59.049	50.000	0.00	0.00	0.00	4.17
1992	2047	0.667993	CGAATGCAGTTGTTGTGGGT	59.332	50.000	0.00	0.00	0.00	4.51
1994	2049	2.095768	CGAATGCAGTTGTTGTGGGTAG	60.096	50.000	0.00	0.00	0.00	3.18
1995	2050	1.909700	ATGCAGTTGTTGTGGGTAGG	58.090	50.000	0.00	0.00	0.00	3.18
1997	2052	0.109723	GCAGTTGTTGTGGGTAGGGA	59.890	55.000	0.00	0.00	0.00	4.20
1999	2054	2.504367	CAGTTGTTGTGGGTAGGGAAG	58.496	52.381	0.00	0.00	0.00	3.46
2001	2056	1.422402	GTTGTTGTGGGTAGGGAAGGA	59.578	52.381	0.00	0.00	0.00	3.36
2002	2057	1.358152	TGTTGTGGGTAGGGAAGGAG	58.642	55.000	0.00	0.00	0.00	3.69
2003	2058	0.035343	GTTGTGGGTAGGGAAGGAGC	60.035	60.000	0.00	0.00	0.00	4.70
2005	2060	1.615424	GTGGGTAGGGAAGGAGCCA	60.615	63.158	0.00	0.00	40.85	4.75
2009	2064	1.213296	GGTAGGGAAGGAGCCATTGA	58.787	55.000	0.00	0.00	0.00	2.57
2011	2066	2.119495	GTAGGGAAGGAGCCATTGAGA	58.881	52.381	0.00	0.00	0.00	3.27
2012	2067	1.904440	AGGGAAGGAGCCATTGAGAT	58.096	50.000	0.00	0.00	0.00	2.75
2014	2069	1.213926	GGGAAGGAGCCATTGAGATGT	59.786	52.381	0.00	0.00	0.00	3.06
2015	2070	2.357569	GGGAAGGAGCCATTGAGATGTT	60.358	50.000	0.00	0.00	0.00	2.71
2016	2071	3.359950	GGAAGGAGCCATTGAGATGTTT	58.640	45.455	0.00	0.00	0.00	2.83
2017	2072	3.766051	GGAAGGAGCCATTGAGATGTTTT	59.234	43.478	0.00	0.00	0.00	2.43
2019	2074	3.771216	AGGAGCCATTGAGATGTTTTGT	58.229	40.909	0.00	0.00	0.00	2.83
2021	2076	3.760684	GGAGCCATTGAGATGTTTTGTCT	59.239	43.478	0.00	0.00	0.00	3.41
2023	2078	5.130292	AGCCATTGAGATGTTTTGTCTTG	57.870	39.130	0.00	0.00	0.00	3.02
2024	2079	4.586001	AGCCATTGAGATGTTTTGTCTTGT	59.414	37.500	0.00	0.00	0.00	3.16
2026	2081	5.176223	GCCATTGAGATGTTTTGTCTTGTTG	59.824	40.000	0.00	0.00	0.00	3.33
2028	2083	5.913137	TTGAGATGTTTTGTCTTGTTGGT	57.087	34.783	0.00	0.00	0.00	3.67
2029	2084	5.499139	TGAGATGTTTTGTCTTGTTGGTC	57.501	39.130	0.00	0.00	0.00	4.02
2031	2086	5.417266	TGAGATGTTTTGTCTTGTTGGTCAA	59.583	36.000	0.00	0.00	34.61	3.18
2032	2087	5.650543	AGATGTTTTGTCTTGTTGGTCAAC	58.349	37.500	6.87	6.87	41.50	3.18
2042	2097	2.956132	TGTTGGTCAACATGGGTCATT	58.044	42.857	11.95	0.00	45.42	2.57
2046	2101	1.895131	GGTCAACATGGGTCATTTGCT	59.105	47.619	0.00	0.00	0.00	3.91
2048	2103	2.821969	GTCAACATGGGTCATTTGCTCT	59.178	45.455	0.00	0.00	0.00	4.09
2049	2104	3.084039	TCAACATGGGTCATTTGCTCTC	58.916	45.455	0.00	0.00	0.00	3.20
2050	2105	2.134789	ACATGGGTCATTTGCTCTCC	57.865	50.000	0.00	0.00	0.00	3.71
2055	2110	2.242965	TGGGTCATTTGCTCTCCATCAT	59.757	45.455	0.00	0.00	0.00	2.45
2057	2112	3.817647	GGGTCATTTGCTCTCCATCATAC	59.182	47.826	0.00	0.00	0.00	2.39
2059	2114	4.445448	GGTCATTTGCTCTCCATCATACCT	60.445	45.833	0.00	0.00	0.00	3.08
2060	2115	4.754114	GTCATTTGCTCTCCATCATACCTC	59.246	45.833	0.00	0.00	0.00	3.85
2062	2117	4.679373	TTTGCTCTCCATCATACCTCTC	57.321	45.455	0.00	0.00	0.00	3.20
2064	2119	4.731313	TGCTCTCCATCATACCTCTCTA	57.269	45.455	0.00	0.00	0.00	2.43
2067	2122	4.458989	GCTCTCCATCATACCTCTCTACAG	59.541	50.000	0.00	0.00	0.00	2.74
2068	2123	4.991776	TCTCCATCATACCTCTCTACAGG	58.008	47.826	0.00	0.00	39.80	4.00
2069	2124	4.665483	TCTCCATCATACCTCTCTACAGGA	59.335	45.833	0.00	0.00	36.96	3.86
2072	2146	6.726379	TCCATCATACCTCTCTACAGGATAG	58.274	44.000	0.00	0.00	36.96	2.08
2408	2696	5.302568	TGCACAATTTTCTTGTTCTCCTCAT	59.697	36.000	0.00	0.00	0.00	2.90
2473	2769	3.519510	TGCCTTGTCAAACTAGCTAGGAT	59.480	43.478	24.35	10.38	0.00	3.24
2709	6154	9.871238	AAAAGCTCTTAGTCATCTATTTACGAA	57.129	29.630	0.00	0.00	0.00	3.85
3224	7741	2.304761	GGTCATACACCTGGAGTTGGAA	59.695	50.000	0.00	0.00	42.84	3.53
3257	7774	4.937620	TCAAGATGGTGCTGATGTAGTTTC	59.062	41.667	0.00	0.00	0.00	2.78
3275	7800	7.710907	TGTAGTTTCATATGTCTGTATTGAGCC	59.289	37.037	1.90	0.00	0.00	4.70
3277	7802	7.341805	AGTTTCATATGTCTGTATTGAGCCTT	58.658	34.615	1.90	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
168	172	4.462483	GGGTATCTTGATAGAGGCTCTCAG	59.538	50.000	22.53	12.79	32.92	3.35
189	193	6.260493	TGAGAACAAATTTGCTCAATTTTGGG	59.740	34.615	20.59	8.92	41.57	4.12
190	194	7.249186	TGAGAACAAATTTGCTCAATTTTGG	57.751	32.000	20.59	12.18	41.57	3.28
245	250	2.800544	TGAGCGTTGAAAAGTCTAGCAC	59.199	45.455	0.00	0.00	0.00	4.40
303	308	4.462133	CAATGAGGAGGCTCTGAAATCAT	58.538	43.478	15.23	12.71	0.00	2.45
345	350	1.029681	TACCCATGACTCGTGGATCG	58.970	55.000	17.76	4.92	42.73	3.69
446	451	6.874134	TGTACAAAGGATCTTACTGCTCTTTC	59.126	38.462	0.00	0.00	0.00	2.62
839	849	2.418083	CGCCTCCCAATTTGGCTCC	61.418	63.158	10.10	0.00	44.09	4.70
849	860	3.343617	CTTTCTTACAAATCGCCTCCCA	58.656	45.455	0.00	0.00	0.00	4.37
920	931	1.394618	GAGCGACTAGTGAGTGGGAT	58.605	55.000	0.00	0.00	35.45	3.85
943	954	3.631250	GGTTGGGGATAAATCTTCTGCA	58.369	45.455	0.00	0.00	0.00	4.41
1035	1052	1.942776	TCTCCTCCAACAGCTCATCA	58.057	50.000	0.00	0.00	0.00	3.07
1158	1175	2.747460	GAAGGCCGATGCAGCACA	60.747	61.111	1.53	0.00	40.13	4.57
1686	1741	6.121590	TCTTGCTATGCATATCACCTTGAAA	58.878	36.000	9.71	0.00	38.76	2.69
1731	1786	3.897239	AGTTGTGGACTGGATGACAAAA	58.103	40.909	0.00	0.00	37.17	2.44
1770	1825	1.751143	AAGGGAGGACAGGGGACTCA	61.751	60.000	0.00	0.00	40.21	3.41
1771	1826	1.081277	AAGGGAGGACAGGGGACTC	59.919	63.158	0.00	0.00	40.21	3.36
1886	1941	4.105486	GACAACTGAAAACCTCAAAGTGC	58.895	43.478	0.00	0.00	32.17	4.40
1933	1988	2.959707	CCGGGTAAGTATCTCTGAGCTT	59.040	50.000	0.00	0.75	0.00	3.74
1952	2007	3.488090	GCCGACGAAGAAAGCCCG	61.488	66.667	0.00	0.00	0.00	6.13
1954	2009	2.727684	GACGCCGACGAAGAAAGCC	61.728	63.158	0.00	0.00	43.93	4.35
1956	2011	3.460144	GGACGCCGACGAAGAAAG	58.540	61.111	0.00	0.00	43.93	2.62
1972	2027	0.039256	CCCACAACAACTGCATTCGG	60.039	55.000	0.00	0.00	0.00	4.30
1975	2030	2.238521	CCTACCCACAACAACTGCATT	58.761	47.619	0.00	0.00	0.00	3.56
1976	2031	1.547675	CCCTACCCACAACAACTGCAT	60.548	52.381	0.00	0.00	0.00	3.96
1978	2033	0.109723	TCCCTACCCACAACAACTGC	59.890	55.000	0.00	0.00	0.00	4.40
1981	2036	1.422402	TCCTTCCCTACCCACAACAAC	59.578	52.381	0.00	0.00	0.00	3.32
1982	2037	1.702957	CTCCTTCCCTACCCACAACAA	59.297	52.381	0.00	0.00	0.00	2.83
1983	2038	1.358152	CTCCTTCCCTACCCACAACA	58.642	55.000	0.00	0.00	0.00	3.33
1984	2039	0.035343	GCTCCTTCCCTACCCACAAC	60.035	60.000	0.00	0.00	0.00	3.32
1990	2045	1.141858	CTCAATGGCTCCTTCCCTACC	59.858	57.143	0.00	0.00	0.00	3.18
1992	2047	2.568546	TCTCAATGGCTCCTTCCCTA	57.431	50.000	0.00	0.00	0.00	3.53
1994	2049	1.213926	ACATCTCAATGGCTCCTTCCC	59.786	52.381	0.00	0.00	37.19	3.97
1995	2050	2.725221	ACATCTCAATGGCTCCTTCC	57.275	50.000	0.00	0.00	37.19	3.46
1997	2052	4.154942	ACAAAACATCTCAATGGCTCCTT	58.845	39.130	0.00	0.00	37.19	3.36
1999	2054	3.760684	AGACAAAACATCTCAATGGCTCC	59.239	43.478	0.00	0.00	37.19	4.70
2001	2056	4.586001	ACAAGACAAAACATCTCAATGGCT	59.414	37.500	0.00	0.00	37.19	4.75
2002	2057	4.874970	ACAAGACAAAACATCTCAATGGC	58.125	39.130	0.00	0.00	37.19	4.40
2003	2058	5.693104	CCAACAAGACAAAACATCTCAATGG	59.307	40.000	0.00	0.00	37.19	3.16
2005	2060	6.096705	TGACCAACAAGACAAAACATCTCAAT	59.903	34.615	0.00	0.00	0.00	2.57
2009	2064	5.650543	GTTGACCAACAAGACAAAACATCT	58.349	37.500	7.92	0.00	40.84	2.90
2023	2078	3.652274	CAAATGACCCATGTTGACCAAC	58.348	45.455	5.97	5.97	41.50	3.77
2024	2079	2.036992	GCAAATGACCCATGTTGACCAA	59.963	45.455	0.00	0.00	0.00	3.67
2026	2081	1.895131	AGCAAATGACCCATGTTGACC	59.105	47.619	0.00	0.00	0.00	4.02
2028	2083	3.084039	GAGAGCAAATGACCCATGTTGA	58.916	45.455	0.00	0.00	0.00	3.18
2029	2084	2.165030	GGAGAGCAAATGACCCATGTTG	59.835	50.000	0.00	0.00	0.00	3.33
2031	2086	1.355381	TGGAGAGCAAATGACCCATGT	59.645	47.619	0.00	0.00	0.00	3.21
2032	2087	2.133281	TGGAGAGCAAATGACCCATG	57.867	50.000	0.00	0.00	0.00	3.66
2033	2088	2.242965	TGATGGAGAGCAAATGACCCAT	59.757	45.455	0.00	0.00	37.13	4.00
2035	2090	2.425143	TGATGGAGAGCAAATGACCC	57.575	50.000	0.00	0.00	0.00	4.46
2036	2091	3.817647	GGTATGATGGAGAGCAAATGACC	59.182	47.826	0.00	0.00	0.00	4.02
2037	2092	4.712476	AGGTATGATGGAGAGCAAATGAC	58.288	43.478	0.00	0.00	0.00	3.06
2040	2095	4.906664	AGAGAGGTATGATGGAGAGCAAAT	59.093	41.667	0.00	0.00	0.00	2.32
2042	2097	3.921104	AGAGAGGTATGATGGAGAGCAA	58.079	45.455	0.00	0.00	0.00	3.91
2046	2101	4.665483	TCCTGTAGAGAGGTATGATGGAGA	59.335	45.833	0.00	0.00	34.36	3.71
2048	2103	5.607168	ATCCTGTAGAGAGGTATGATGGA	57.393	43.478	0.00	0.00	34.36	3.41
2049	2104	6.489603	ACTATCCTGTAGAGAGGTATGATGG	58.510	44.000	0.00	0.00	38.19	3.51
2050	2105	7.148323	CGAACTATCCTGTAGAGAGGTATGATG	60.148	44.444	0.00	0.00	32.54	3.07
2055	2110	4.141551	TGCGAACTATCCTGTAGAGAGGTA	60.142	45.833	0.00	0.00	32.54	3.08
2057	2112	3.215151	TGCGAACTATCCTGTAGAGAGG	58.785	50.000	0.00	0.00	38.19	3.69
2059	2114	4.461198	TCATGCGAACTATCCTGTAGAGA	58.539	43.478	0.00	0.00	0.00	3.10
2060	2115	4.837896	TCATGCGAACTATCCTGTAGAG	57.162	45.455	0.00	0.00	0.00	2.43
2062	2117	4.687948	CCATTCATGCGAACTATCCTGTAG	59.312	45.833	0.00	0.00	32.81	2.74
2064	2119	3.134623	TCCATTCATGCGAACTATCCTGT	59.865	43.478	0.00	0.00	32.81	4.00
2067	2122	3.058639	GCTTCCATTCATGCGAACTATCC	60.059	47.826	0.00	0.00	32.81	2.59
2068	2123	3.812053	AGCTTCCATTCATGCGAACTATC	59.188	43.478	0.00	0.00	32.81	2.08
2069	2124	3.813443	AGCTTCCATTCATGCGAACTAT	58.187	40.909	0.00	0.00	32.81	2.12
2072	2146	2.162208	TCAAGCTTCCATTCATGCGAAC	59.838	45.455	0.00	0.00	32.81	3.95
2473	2769	6.964807	ATCAAAGCATGAATTGGCTACATA	57.035	33.333	0.00	0.00	42.54	2.29
2644	2971	5.733091	GCAACATTCTTGTGTAAGTGCAAGA	60.733	40.000	3.24	3.24	46.23	3.02
2645	2972	4.442073	GCAACATTCTTGTGTAAGTGCAAG	59.558	41.667	0.00	0.00	42.32	4.01
2706	6151	8.812329	CAGAACAAGATAAATAAGGAGTCTTCG	58.188	37.037	0.00	0.00	34.59	3.79
3224	7741	2.569059	CACCATCTTGATCATTCGCCT	58.431	47.619	0.00	0.00	0.00	5.52
3257	7774	7.658982	ACATACAAGGCTCAATACAGACATATG	59.341	37.037	0.00	0.00	0.00	1.78
3307	7832	3.813443	ACATCAGAACAAGTCTTGCTGT	58.187	40.909	12.66	0.00	32.70	4.40
3318	7843	3.625853	TCCCAACACAAACATCAGAACA	58.374	40.909	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.