Multiple sequence alignment - TraesCS7D01G550000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G550000 chr7D 100.000 3197 0 0 1 3197 634453660 634456856 0.000000e+00 5904.0
1 TraesCS7D01G550000 chr7D 82.495 914 137 10 1598 2502 634651237 634652136 0.000000e+00 780.0
2 TraesCS7D01G550000 chr7D 81.739 920 155 5 1598 2516 583549135 583550042 0.000000e+00 756.0
3 TraesCS7D01G550000 chr7D 81.648 910 140 18 1598 2502 634660092 634660979 0.000000e+00 730.0
4 TraesCS7D01G550000 chr7D 81.713 864 130 17 1598 2455 634750871 634750030 0.000000e+00 695.0
5 TraesCS7D01G550000 chr7D 86.736 573 65 7 968 1536 634751429 634750864 7.530000e-176 627.0
6 TraesCS7D01G550000 chr7D 83.849 582 83 8 959 1536 634659525 634660099 7.800000e-151 544.0
7 TraesCS7D01G550000 chr7D 82.542 590 68 20 965 1536 583548570 583549142 1.330000e-133 486.0
8 TraesCS7D01G550000 chr7D 87.826 115 13 1 2606 2719 630481688 630481574 2.000000e-27 134.0
9 TraesCS7D01G550000 chr7D 92.473 93 6 1 726 818 634454266 634454357 7.200000e-27 132.0
10 TraesCS7D01G550000 chr7D 92.473 93 6 1 607 698 634454385 634454477 7.200000e-27 132.0
11 TraesCS7D01G550000 chr7D 94.340 53 2 1 766 818 634454266 634454317 2.640000e-11 80.5
12 TraesCS7D01G550000 chr7D 94.340 53 2 1 607 658 634454425 634454477 2.640000e-11 80.5
13 TraesCS7D01G550000 chr7A 93.375 1600 91 6 1600 3197 731774363 731772777 0.000000e+00 2353.0
14 TraesCS7D01G550000 chr7A 83.630 898 132 8 1598 2493 675022495 675023379 0.000000e+00 830.0
15 TraesCS7D01G550000 chr7A 81.878 916 154 10 1598 2502 731001269 731002183 0.000000e+00 761.0
16 TraesCS7D01G550000 chr7A 82.187 887 136 11 1598 2476 731570843 731569971 0.000000e+00 743.0
17 TraesCS7D01G550000 chr7A 81.433 921 151 11 1599 2516 731743128 731742225 0.000000e+00 736.0
18 TraesCS7D01G550000 chr7A 80.901 932 149 16 1598 2516 730881906 730882821 0.000000e+00 708.0
19 TraesCS7D01G550000 chr7A 81.119 858 139 11 1601 2455 731096587 731097424 0.000000e+00 665.0
20 TraesCS7D01G550000 chr7A 80.556 900 146 16 1598 2491 731158079 731158955 0.000000e+00 665.0
21 TraesCS7D01G550000 chr7A 85.476 599 68 14 955 1536 731000680 731001276 9.810000e-170 606.0
22 TraesCS7D01G550000 chr7A 83.591 646 91 9 895 1536 731095957 731096591 2.750000e-165 592.0
23 TraesCS7D01G550000 chr7A 83.082 597 66 19 958 1536 675021923 675022502 7.910000e-141 510.0
24 TraesCS7D01G550000 chr7A 81.720 651 80 24 895 1536 731126027 731126647 1.020000e-139 507.0
25 TraesCS7D01G550000 chr7A 81.720 651 79 23 895 1536 731186429 731187048 1.020000e-139 507.0
26 TraesCS7D01G550000 chr7A 83.106 586 65 17 959 1536 731157527 731158086 1.320000e-138 503.0
27 TraesCS7D01G550000 chr7A 85.288 469 38 18 162 618 731775248 731774799 3.760000e-124 455.0
28 TraesCS7D01G550000 chr7A 84.494 316 37 10 977 1280 731648320 731648005 5.180000e-78 302.0
29 TraesCS7D01G550000 chr7A 82.500 360 46 12 2619 2965 731742134 731741779 1.860000e-77 300.0
30 TraesCS7D01G550000 chr7A 80.814 344 48 14 2570 2901 731012840 731013177 1.470000e-63 254.0
31 TraesCS7D01G550000 chr7A 76.559 401 62 19 2530 2901 731188567 731188964 1.170000e-44 191.0
32 TraesCS7D01G550000 chr7A 72.931 580 114 35 2157 2720 726432472 726431920 9.180000e-36 161.0
33 TraesCS7D01G550000 chr7A 87.179 117 12 3 2605 2719 726452089 726451974 2.590000e-26 130.0
34 TraesCS7D01G550000 chr7A 96.000 50 2 0 939 988 731648577 731648528 7.350000e-12 82.4
35 TraesCS7D01G550000 chr7B 82.334 934 138 13 1598 2517 741624415 741623495 0.000000e+00 785.0
36 TraesCS7D01G550000 chr7B 82.302 921 145 9 1599 2516 741482663 741483568 0.000000e+00 782.0
37 TraesCS7D01G550000 chr7B 81.929 902 144 8 1619 2516 741541949 741542835 0.000000e+00 745.0
38 TraesCS7D01G550000 chr7B 85.874 538 29 14 2687 3197 741667110 741666593 2.180000e-146 529.0
39 TraesCS7D01G550000 chr7B 85.841 452 52 4 968 1407 741624973 741624522 1.340000e-128 470.0
40 TraesCS7D01G550000 chr7B 85.746 449 55 5 959 1399 741482130 741482577 1.740000e-127 466.0
41 TraesCS7D01G550000 chr7B 82.723 191 29 4 2618 2806 703998401 703998589 1.970000e-37 167.0
42 TraesCS7D01G550000 chr4B 81.940 897 139 11 1598 2491 625073368 625074244 0.000000e+00 737.0
43 TraesCS7D01G550000 chr4B 86.441 590 68 7 952 1536 625072793 625073375 1.250000e-178 636.0
44 TraesCS7D01G550000 chr4B 79.016 386 55 14 2517 2878 625074781 625075164 1.150000e-59 241.0
45 TraesCS7D01G550000 chr6D 99.394 165 1 0 1 165 37336593 37336429 1.860000e-77 300.0
46 TraesCS7D01G550000 chr6D 98.788 165 2 0 1 165 443253721 443253557 8.670000e-76 294.0
47 TraesCS7D01G550000 chr6D 98.204 167 3 0 1 167 453247959 453248125 3.120000e-75 292.0
48 TraesCS7D01G550000 chr4D 98.788 165 2 0 1 165 393156304 393156468 8.670000e-76 294.0
49 TraesCS7D01G550000 chr2D 98.225 169 2 1 1 169 486338845 486338678 8.670000e-76 294.0
50 TraesCS7D01G550000 chr1D 98.788 165 2 0 1 165 58954460 58954624 8.670000e-76 294.0
51 TraesCS7D01G550000 chr1D 98.788 165 2 0 1 165 209372878 209373042 8.670000e-76 294.0
52 TraesCS7D01G550000 chr1D 98.788 165 2 0 1 165 240996817 240996653 8.670000e-76 294.0
53 TraesCS7D01G550000 chr1D 98.788 165 2 0 1 165 495012816 495012980 8.670000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G550000 chr7D 634453660 634456856 3196 False 1265.8 5904 94.725200 1 3197 5 chr7D.!!$F3 3196
1 TraesCS7D01G550000 chr7D 634651237 634652136 899 False 780.0 780 82.495000 1598 2502 1 chr7D.!!$F1 904
2 TraesCS7D01G550000 chr7D 634750030 634751429 1399 True 661.0 695 84.224500 968 2455 2 chr7D.!!$R2 1487
3 TraesCS7D01G550000 chr7D 634659525 634660979 1454 False 637.0 730 82.748500 959 2502 2 chr7D.!!$F4 1543
4 TraesCS7D01G550000 chr7D 583548570 583550042 1472 False 621.0 756 82.140500 965 2516 2 chr7D.!!$F2 1551
5 TraesCS7D01G550000 chr7A 731772777 731775248 2471 True 1404.0 2353 89.331500 162 3197 2 chr7A.!!$R6 3035
6 TraesCS7D01G550000 chr7A 731569971 731570843 872 True 743.0 743 82.187000 1598 2476 1 chr7A.!!$R3 878
7 TraesCS7D01G550000 chr7A 730881906 730882821 915 False 708.0 708 80.901000 1598 2516 1 chr7A.!!$F1 918
8 TraesCS7D01G550000 chr7A 731000680 731002183 1503 False 683.5 761 83.677000 955 2502 2 chr7A.!!$F5 1547
9 TraesCS7D01G550000 chr7A 675021923 675023379 1456 False 670.0 830 83.356000 958 2493 2 chr7A.!!$F4 1535
10 TraesCS7D01G550000 chr7A 731095957 731097424 1467 False 628.5 665 82.355000 895 2455 2 chr7A.!!$F6 1560
11 TraesCS7D01G550000 chr7A 731157527 731158955 1428 False 584.0 665 81.831000 959 2491 2 chr7A.!!$F7 1532
12 TraesCS7D01G550000 chr7A 731741779 731743128 1349 True 518.0 736 81.966500 1599 2965 2 chr7A.!!$R5 1366
13 TraesCS7D01G550000 chr7A 731126027 731126647 620 False 507.0 507 81.720000 895 1536 1 chr7A.!!$F3 641
14 TraesCS7D01G550000 chr7A 731186429 731188964 2535 False 349.0 507 79.139500 895 2901 2 chr7A.!!$F8 2006
15 TraesCS7D01G550000 chr7B 741541949 741542835 886 False 745.0 745 81.929000 1619 2516 1 chr7B.!!$F2 897
16 TraesCS7D01G550000 chr7B 741623495 741624973 1478 True 627.5 785 84.087500 968 2517 2 chr7B.!!$R2 1549
17 TraesCS7D01G550000 chr7B 741482130 741483568 1438 False 624.0 782 84.024000 959 2516 2 chr7B.!!$F3 1557
18 TraesCS7D01G550000 chr7B 741666593 741667110 517 True 529.0 529 85.874000 2687 3197 1 chr7B.!!$R1 510
19 TraesCS7D01G550000 chr4B 625072793 625075164 2371 False 538.0 737 82.465667 952 2878 3 chr4B.!!$F1 1926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.035725 CTTCCGGGGTGGGACTAAAC 60.036 60.0 0.0 0.0 38.76 2.01 F
105 106 0.106521 GCACCACCACTTGCCATTTT 59.893 50.0 0.0 0.0 32.21 1.82 F
953 968 0.107945 GTCGCTCCCAGCAGAAGATT 60.108 55.0 0.0 0.0 42.58 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1256 1304 0.741221 GAAGGAGAAATCAGCGGCGT 60.741 55.0 9.37 0.0 0.00 5.68 R
1528 1583 0.745845 AGGATGCCTACTTTGCAGCG 60.746 55.0 0.00 0.0 45.65 5.18 R
2341 2489 0.179020 CACCAGCTTGGAACAGACCA 60.179 55.0 8.91 0.0 40.96 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.181309 CACTTAGAGTGGTGGAGAGAAC 57.819 50.000 0.16 0.00 42.35 3.01
31 32 3.056465 CACTTAGAGTGGTGGAGAGAACC 60.056 52.174 0.16 0.00 42.35 3.62
32 33 2.233305 TAGAGTGGTGGAGAGAACCC 57.767 55.000 0.00 0.00 36.83 4.11
33 34 0.191064 AGAGTGGTGGAGAGAACCCA 59.809 55.000 0.00 0.00 36.83 4.51
45 46 7.841282 TGGAGAGAACCCACTATATAAAGAG 57.159 40.000 0.00 0.00 0.00 2.85
46 47 6.782988 TGGAGAGAACCCACTATATAAAGAGG 59.217 42.308 0.00 0.00 0.00 3.69
47 48 6.783482 GGAGAGAACCCACTATATAAAGAGGT 59.217 42.308 0.00 0.00 0.00 3.85
48 49 7.039574 GGAGAGAACCCACTATATAAAGAGGTC 60.040 44.444 0.00 0.00 0.00 3.85
49 50 6.490721 AGAGAACCCACTATATAAAGAGGTCG 59.509 42.308 0.00 0.00 0.00 4.79
50 51 6.371278 AGAACCCACTATATAAAGAGGTCGA 58.629 40.000 0.00 0.00 0.00 4.20
51 52 6.837568 AGAACCCACTATATAAAGAGGTCGAA 59.162 38.462 0.00 0.00 0.00 3.71
52 53 6.402456 ACCCACTATATAAAGAGGTCGAAC 57.598 41.667 0.00 0.00 0.00 3.95
53 54 6.134754 ACCCACTATATAAAGAGGTCGAACT 58.865 40.000 0.34 0.34 0.00 3.01
54 55 6.264970 ACCCACTATATAAAGAGGTCGAACTC 59.735 42.308 23.21 23.21 37.77 3.01
63 64 4.245845 AGAGGTCGAACTCTTCTTCAAC 57.754 45.455 27.38 0.00 45.21 3.18
64 65 3.892588 AGAGGTCGAACTCTTCTTCAACT 59.107 43.478 27.38 1.87 45.21 3.16
65 66 4.342665 AGAGGTCGAACTCTTCTTCAACTT 59.657 41.667 27.38 1.05 45.21 2.66
66 67 4.623002 AGGTCGAACTCTTCTTCAACTTC 58.377 43.478 0.00 0.00 0.00 3.01
67 68 3.741856 GGTCGAACTCTTCTTCAACTTCC 59.258 47.826 0.00 0.00 0.00 3.46
68 69 3.425858 GTCGAACTCTTCTTCAACTTCCG 59.574 47.826 0.00 0.00 0.00 4.30
69 70 2.731976 CGAACTCTTCTTCAACTTCCGG 59.268 50.000 0.00 0.00 0.00 5.14
70 71 2.841442 ACTCTTCTTCAACTTCCGGG 57.159 50.000 0.00 0.00 0.00 5.73
71 72 1.348036 ACTCTTCTTCAACTTCCGGGG 59.652 52.381 0.00 0.00 0.00 5.73
72 73 1.348036 CTCTTCTTCAACTTCCGGGGT 59.652 52.381 0.00 0.00 0.00 4.95
73 74 1.071699 TCTTCTTCAACTTCCGGGGTG 59.928 52.381 0.00 0.00 0.00 4.61
74 75 0.109723 TTCTTCAACTTCCGGGGTGG 59.890 55.000 0.00 0.00 40.09 4.61
75 76 1.303317 CTTCAACTTCCGGGGTGGG 60.303 63.158 0.00 0.00 38.76 4.61
76 77 1.770927 TTCAACTTCCGGGGTGGGA 60.771 57.895 0.00 0.56 38.76 4.37
77 78 2.033602 CAACTTCCGGGGTGGGAC 59.966 66.667 0.00 0.00 38.76 4.46
78 79 2.122099 AACTTCCGGGGTGGGACT 60.122 61.111 0.00 0.00 38.76 3.85
79 80 1.159184 AACTTCCGGGGTGGGACTA 59.841 57.895 0.00 0.00 38.76 2.59
80 81 0.474273 AACTTCCGGGGTGGGACTAA 60.474 55.000 0.00 0.00 38.76 2.24
81 82 0.474273 ACTTCCGGGGTGGGACTAAA 60.474 55.000 0.00 0.00 38.76 1.85
82 83 0.035725 CTTCCGGGGTGGGACTAAAC 60.036 60.000 0.00 0.00 38.76 2.01
83 84 0.474273 TTCCGGGGTGGGACTAAACT 60.474 55.000 0.00 0.00 38.76 2.66
84 85 0.474273 TCCGGGGTGGGACTAAACTT 60.474 55.000 0.00 0.00 38.76 2.66
85 86 1.203288 TCCGGGGTGGGACTAAACTTA 60.203 52.381 0.00 0.00 38.76 2.24
86 87 1.208776 CCGGGGTGGGACTAAACTTAG 59.791 57.143 0.00 0.00 36.82 2.18
87 88 1.406477 CGGGGTGGGACTAAACTTAGC 60.406 57.143 0.00 0.00 34.09 3.09
88 89 1.631898 GGGGTGGGACTAAACTTAGCA 59.368 52.381 0.00 0.00 34.09 3.49
89 90 2.617276 GGGGTGGGACTAAACTTAGCAC 60.617 54.545 0.00 0.00 34.09 4.40
90 91 2.617276 GGGTGGGACTAAACTTAGCACC 60.617 54.545 12.70 12.70 39.07 5.01
91 92 2.039348 GGTGGGACTAAACTTAGCACCA 59.961 50.000 14.78 11.67 39.34 4.17
92 93 3.072211 GTGGGACTAAACTTAGCACCAC 58.928 50.000 19.19 19.19 45.26 4.16
93 94 2.039348 TGGGACTAAACTTAGCACCACC 59.961 50.000 8.06 0.00 35.94 4.61
94 95 2.039348 GGGACTAAACTTAGCACCACCA 59.961 50.000 12.31 0.00 34.44 4.17
95 96 3.072211 GGACTAAACTTAGCACCACCAC 58.928 50.000 0.00 0.00 34.09 4.16
96 97 3.244457 GGACTAAACTTAGCACCACCACT 60.244 47.826 0.00 0.00 34.09 4.00
97 98 4.386711 GACTAAACTTAGCACCACCACTT 58.613 43.478 0.00 0.00 34.09 3.16
98 99 4.134563 ACTAAACTTAGCACCACCACTTG 58.865 43.478 0.00 0.00 34.09 3.16
99 100 1.318576 AACTTAGCACCACCACTTGC 58.681 50.000 0.00 0.00 39.16 4.01
100 101 0.537371 ACTTAGCACCACCACTTGCC 60.537 55.000 0.00 0.00 39.75 4.52
101 102 0.537143 CTTAGCACCACCACTTGCCA 60.537 55.000 0.00 0.00 39.75 4.92
102 103 0.112218 TTAGCACCACCACTTGCCAT 59.888 50.000 0.00 0.00 39.75 4.40
103 104 0.112218 TAGCACCACCACTTGCCATT 59.888 50.000 0.00 0.00 39.75 3.16
104 105 0.760189 AGCACCACCACTTGCCATTT 60.760 50.000 0.00 0.00 39.75 2.32
105 106 0.106521 GCACCACCACTTGCCATTTT 59.893 50.000 0.00 0.00 32.21 1.82
106 107 1.342819 GCACCACCACTTGCCATTTTA 59.657 47.619 0.00 0.00 32.21 1.52
107 108 2.866065 GCACCACCACTTGCCATTTTAC 60.866 50.000 0.00 0.00 32.21 2.01
108 109 2.363680 CACCACCACTTGCCATTTTACA 59.636 45.455 0.00 0.00 0.00 2.41
109 110 2.364002 ACCACCACTTGCCATTTTACAC 59.636 45.455 0.00 0.00 0.00 2.90
110 111 2.363680 CCACCACTTGCCATTTTACACA 59.636 45.455 0.00 0.00 0.00 3.72
111 112 3.006752 CCACCACTTGCCATTTTACACAT 59.993 43.478 0.00 0.00 0.00 3.21
112 113 3.989167 CACCACTTGCCATTTTACACATG 59.011 43.478 0.00 0.00 0.00 3.21
113 114 3.006752 ACCACTTGCCATTTTACACATGG 59.993 43.478 0.00 0.00 43.81 3.66
114 115 3.587923 CACTTGCCATTTTACACATGGG 58.412 45.455 0.00 0.00 41.56 4.00
115 116 2.028203 ACTTGCCATTTTACACATGGGC 60.028 45.455 0.00 0.00 41.56 5.36
116 117 1.935799 TGCCATTTTACACATGGGCT 58.064 45.000 0.00 0.00 41.56 5.19
117 118 2.255406 TGCCATTTTACACATGGGCTT 58.745 42.857 0.00 0.00 41.56 4.35
118 119 2.636893 TGCCATTTTACACATGGGCTTT 59.363 40.909 0.00 0.00 41.56 3.51
119 120 3.002102 GCCATTTTACACATGGGCTTTG 58.998 45.455 0.00 0.00 41.56 2.77
120 121 3.306641 GCCATTTTACACATGGGCTTTGA 60.307 43.478 0.00 0.00 41.56 2.69
121 122 4.497300 CCATTTTACACATGGGCTTTGAG 58.503 43.478 0.00 0.00 38.05 3.02
122 123 4.220382 CCATTTTACACATGGGCTTTGAGA 59.780 41.667 0.00 0.00 38.05 3.27
123 124 5.105228 CCATTTTACACATGGGCTTTGAGAT 60.105 40.000 0.00 0.00 38.05 2.75
124 125 6.400568 CATTTTACACATGGGCTTTGAGATT 58.599 36.000 0.00 0.00 0.00 2.40
125 126 6.418057 TTTTACACATGGGCTTTGAGATTT 57.582 33.333 0.00 0.00 0.00 2.17
126 127 5.643379 TTACACATGGGCTTTGAGATTTC 57.357 39.130 0.00 0.00 0.00 2.17
127 128 2.489329 ACACATGGGCTTTGAGATTTCG 59.511 45.455 0.00 0.00 0.00 3.46
128 129 2.094675 ACATGGGCTTTGAGATTTCGG 58.905 47.619 0.00 0.00 0.00 4.30
129 130 2.290896 ACATGGGCTTTGAGATTTCGGA 60.291 45.455 0.00 0.00 0.00 4.55
130 131 2.577606 TGGGCTTTGAGATTTCGGAA 57.422 45.000 0.00 0.00 0.00 4.30
131 132 2.870175 TGGGCTTTGAGATTTCGGAAA 58.130 42.857 5.52 5.52 0.00 3.13
132 133 3.430453 TGGGCTTTGAGATTTCGGAAAT 58.570 40.909 15.45 15.45 0.00 2.17
133 134 3.831911 TGGGCTTTGAGATTTCGGAAATT 59.168 39.130 16.49 7.46 0.00 1.82
134 135 4.176271 GGGCTTTGAGATTTCGGAAATTG 58.824 43.478 16.49 5.62 0.00 2.32
135 136 3.614176 GGCTTTGAGATTTCGGAAATTGC 59.386 43.478 16.49 11.98 0.00 3.56
136 137 4.488879 GCTTTGAGATTTCGGAAATTGCT 58.511 39.130 16.49 10.29 0.00 3.91
137 138 5.393027 GGCTTTGAGATTTCGGAAATTGCTA 60.393 40.000 16.49 6.90 0.00 3.49
138 139 6.268566 GCTTTGAGATTTCGGAAATTGCTAT 58.731 36.000 16.49 2.45 0.00 2.97
139 140 6.197842 GCTTTGAGATTTCGGAAATTGCTATG 59.802 38.462 16.49 11.25 0.00 2.23
140 141 5.756195 TGAGATTTCGGAAATTGCTATGG 57.244 39.130 16.49 0.00 0.00 2.74
141 142 4.580167 TGAGATTTCGGAAATTGCTATGGG 59.420 41.667 16.49 0.00 0.00 4.00
142 143 3.319122 AGATTTCGGAAATTGCTATGGGC 59.681 43.478 16.49 1.89 42.22 5.36
143 144 1.398692 TTCGGAAATTGCTATGGGCC 58.601 50.000 0.00 0.00 40.92 5.80
144 145 0.550914 TCGGAAATTGCTATGGGCCT 59.449 50.000 4.53 0.00 40.92 5.19
145 146 1.771854 TCGGAAATTGCTATGGGCCTA 59.228 47.619 4.53 0.00 40.92 3.93
146 147 2.154462 CGGAAATTGCTATGGGCCTAG 58.846 52.381 4.53 5.37 40.92 3.02
147 148 1.889170 GGAAATTGCTATGGGCCTAGC 59.111 52.381 21.10 21.10 43.61 3.42
224 225 1.127582 CTTTCTGGCTTTCTCGCTTCG 59.872 52.381 0.00 0.00 0.00 3.79
274 275 1.307097 GAAGAGATGCACATCCTGGC 58.693 55.000 7.01 0.00 38.58 4.85
285 286 0.401738 CATCCTGGCCGGGTTCATAT 59.598 55.000 30.31 13.31 0.00 1.78
321 322 0.179161 CTTGAGAGTGTCTACGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
343 344 2.628696 CCATTGCGCTTGGCTGTCA 61.629 57.895 15.43 0.00 44.05 3.58
373 388 3.173668 TCATAAACCGATGGACGAAGG 57.826 47.619 0.00 0.00 45.77 3.46
382 397 4.368543 GGACGAAGGACGCCCGTT 62.369 66.667 0.00 0.00 46.94 4.44
383 398 2.808321 GACGAAGGACGCCCGTTC 60.808 66.667 0.00 0.00 46.94 3.95
384 399 4.368543 ACGAAGGACGCCCGTTCC 62.369 66.667 0.00 0.00 46.94 3.62
385 400 4.367023 CGAAGGACGCCCGTTCCA 62.367 66.667 10.37 0.00 36.57 3.53
386 401 2.741211 GAAGGACGCCCGTTCCAC 60.741 66.667 10.37 0.00 37.58 4.02
387 402 3.524648 GAAGGACGCCCGTTCCACA 62.525 63.158 10.37 0.00 37.58 4.17
388 403 2.999739 GAAGGACGCCCGTTCCACAA 63.000 60.000 10.37 0.00 37.58 3.33
389 404 3.351416 GGACGCCCGTTCCACAAC 61.351 66.667 0.00 0.00 0.00 3.32
390 405 3.351416 GACGCCCGTTCCACAACC 61.351 66.667 0.00 0.00 0.00 3.77
391 406 3.819877 GACGCCCGTTCCACAACCT 62.820 63.158 0.00 0.00 0.00 3.50
392 407 3.047877 CGCCCGTTCCACAACCTC 61.048 66.667 0.00 0.00 0.00 3.85
393 408 2.671963 GCCCGTTCCACAACCTCC 60.672 66.667 0.00 0.00 0.00 4.30
394 409 2.033602 CCCGTTCCACAACCTCCC 59.966 66.667 0.00 0.00 0.00 4.30
395 410 2.358247 CCGTTCCACAACCTCCCG 60.358 66.667 0.00 0.00 0.00 5.14
396 411 2.358247 CGTTCCACAACCTCCCGG 60.358 66.667 0.00 0.00 0.00 5.73
397 412 2.671963 GTTCCACAACCTCCCGGC 60.672 66.667 0.00 0.00 0.00 6.13
398 413 3.961414 TTCCACAACCTCCCGGCC 61.961 66.667 0.00 0.00 0.00 6.13
400 415 4.047125 CCACAACCTCCCGGCCAT 62.047 66.667 2.24 0.00 0.00 4.40
401 416 2.751436 CACAACCTCCCGGCCATG 60.751 66.667 2.24 0.00 0.00 3.66
402 417 4.047125 ACAACCTCCCGGCCATGG 62.047 66.667 7.63 7.63 0.00 3.66
468 483 1.202533 GGTGTCATGGAGGTATGTCCG 60.203 57.143 0.00 0.00 39.81 4.79
469 484 1.119684 TGTCATGGAGGTATGTCCGG 58.880 55.000 0.00 0.00 39.81 5.14
480 495 1.906105 TATGTCCGGTCCCAAGTGGC 61.906 60.000 0.00 0.00 0.00 5.01
486 501 2.432628 GTCCCAAGTGGCGAGTCG 60.433 66.667 8.54 8.54 0.00 4.18
504 519 1.157870 CGCCGGCGATGATAAGGTTT 61.158 55.000 44.86 0.00 42.83 3.27
506 521 2.215196 GCCGGCGATGATAAGGTTTTA 58.785 47.619 12.58 0.00 0.00 1.52
533 548 0.688087 AGAAGAAGCTAGGGACCCGG 60.688 60.000 4.40 3.38 0.00 5.73
536 551 0.976590 AGAAGCTAGGGACCCGGTTC 60.977 60.000 17.87 17.87 0.00 3.62
549 564 4.565028 GGACCCGGTTCTGTTTTCTATCTT 60.565 45.833 0.00 0.00 0.00 2.40
555 570 6.238648 CCGGTTCTGTTTTCTATCTTGTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
556 571 6.632834 CGGTTCTGTTTTCTATCTTGTTGTTG 59.367 38.462 0.00 0.00 0.00 3.33
567 582 3.256704 TCTTGTTGTTGGGGTCCTCTAT 58.743 45.455 0.00 0.00 0.00 1.98
589 604 8.304596 TCTATGAAAGAGTCACATACGAGTTTT 58.695 33.333 0.00 0.00 39.72 2.43
620 635 9.996554 ATTTAGATTTAGTTTTGGGTCCTTTTG 57.003 29.630 0.00 0.00 0.00 2.44
621 636 5.853936 AGATTTAGTTTTGGGTCCTTTTGC 58.146 37.500 0.00 0.00 0.00 3.68
622 637 5.365314 AGATTTAGTTTTGGGTCCTTTTGCA 59.635 36.000 0.00 0.00 0.00 4.08
623 638 5.422214 TTTAGTTTTGGGTCCTTTTGCAA 57.578 34.783 0.00 0.00 0.00 4.08
624 639 5.622346 TTAGTTTTGGGTCCTTTTGCAAT 57.378 34.783 0.00 0.00 0.00 3.56
625 640 4.502105 AGTTTTGGGTCCTTTTGCAATT 57.498 36.364 0.00 0.00 0.00 2.32
626 641 4.854173 AGTTTTGGGTCCTTTTGCAATTT 58.146 34.783 0.00 0.00 0.00 1.82
627 642 4.639755 AGTTTTGGGTCCTTTTGCAATTTG 59.360 37.500 0.00 0.00 0.00 2.32
628 643 3.922171 TTGGGTCCTTTTGCAATTTGT 57.078 38.095 0.00 0.00 0.00 2.83
629 644 3.922171 TGGGTCCTTTTGCAATTTGTT 57.078 38.095 0.00 0.00 0.00 2.83
630 645 5.359194 TTGGGTCCTTTTGCAATTTGTTA 57.641 34.783 0.00 0.00 0.00 2.41
631 646 5.559148 TGGGTCCTTTTGCAATTTGTTAT 57.441 34.783 0.00 0.00 0.00 1.89
632 647 5.303971 TGGGTCCTTTTGCAATTTGTTATG 58.696 37.500 0.00 0.00 0.00 1.90
633 648 5.163258 TGGGTCCTTTTGCAATTTGTTATGT 60.163 36.000 0.00 0.00 0.00 2.29
634 649 6.042093 TGGGTCCTTTTGCAATTTGTTATGTA 59.958 34.615 0.00 0.00 0.00 2.29
635 650 6.367695 GGGTCCTTTTGCAATTTGTTATGTAC 59.632 38.462 0.00 0.00 0.00 2.90
636 651 6.367695 GGTCCTTTTGCAATTTGTTATGTACC 59.632 38.462 0.00 0.00 0.00 3.34
637 652 6.926272 GTCCTTTTGCAATTTGTTATGTACCA 59.074 34.615 0.00 0.00 0.00 3.25
638 653 6.926272 TCCTTTTGCAATTTGTTATGTACCAC 59.074 34.615 0.00 0.00 0.00 4.16
639 654 6.147000 CCTTTTGCAATTTGTTATGTACCACC 59.853 38.462 0.00 0.00 0.00 4.61
640 655 4.427096 TGCAATTTGTTATGTACCACCG 57.573 40.909 0.00 0.00 0.00 4.94
641 656 3.191581 TGCAATTTGTTATGTACCACCGG 59.808 43.478 0.00 0.00 0.00 5.28
642 657 3.191791 GCAATTTGTTATGTACCACCGGT 59.808 43.478 0.00 0.00 40.16 5.28
643 658 4.321378 GCAATTTGTTATGTACCACCGGTT 60.321 41.667 2.97 0.00 37.09 4.44
644 659 5.395642 CAATTTGTTATGTACCACCGGTTC 58.604 41.667 2.97 0.00 37.09 3.62
645 660 4.354893 TTTGTTATGTACCACCGGTTCT 57.645 40.909 2.97 0.00 37.09 3.01
646 661 4.354893 TTGTTATGTACCACCGGTTCTT 57.645 40.909 2.97 0.00 37.09 2.52
647 662 4.354893 TGTTATGTACCACCGGTTCTTT 57.645 40.909 2.97 0.00 37.09 2.52
648 663 4.716794 TGTTATGTACCACCGGTTCTTTT 58.283 39.130 2.97 0.00 37.09 2.27
649 664 4.756135 TGTTATGTACCACCGGTTCTTTTC 59.244 41.667 2.97 0.00 37.09 2.29
650 665 1.868469 TGTACCACCGGTTCTTTTCG 58.132 50.000 2.97 0.00 37.09 3.46
655 670 3.976758 CCGGTTCTTTTCGGGTCC 58.023 61.111 0.00 0.00 42.32 4.46
656 671 1.373812 CCGGTTCTTTTCGGGTCCT 59.626 57.895 0.00 0.00 42.32 3.85
657 672 0.250597 CCGGTTCTTTTCGGGTCCTT 60.251 55.000 0.00 0.00 42.32 3.36
658 673 1.601166 CGGTTCTTTTCGGGTCCTTT 58.399 50.000 0.00 0.00 0.00 3.11
659 674 1.951602 CGGTTCTTTTCGGGTCCTTTT 59.048 47.619 0.00 0.00 0.00 2.27
660 675 3.140623 CGGTTCTTTTCGGGTCCTTTTA 58.859 45.455 0.00 0.00 0.00 1.52
661 676 3.058708 CGGTTCTTTTCGGGTCCTTTTAC 60.059 47.826 0.00 0.00 0.00 2.01
662 677 3.884693 GGTTCTTTTCGGGTCCTTTTACA 59.115 43.478 0.00 0.00 0.00 2.41
663 678 4.338964 GGTTCTTTTCGGGTCCTTTTACAA 59.661 41.667 0.00 0.00 0.00 2.41
664 679 5.010314 GGTTCTTTTCGGGTCCTTTTACAAT 59.990 40.000 0.00 0.00 0.00 2.71
665 680 6.461927 GGTTCTTTTCGGGTCCTTTTACAATT 60.462 38.462 0.00 0.00 0.00 2.32
666 681 6.718522 TCTTTTCGGGTCCTTTTACAATTT 57.281 33.333 0.00 0.00 0.00 1.82
667 682 6.508777 TCTTTTCGGGTCCTTTTACAATTTG 58.491 36.000 0.00 0.00 0.00 2.32
668 683 5.855740 TTTCGGGTCCTTTTACAATTTGT 57.144 34.783 7.30 7.30 0.00 2.83
669 684 5.855740 TTCGGGTCCTTTTACAATTTGTT 57.144 34.783 7.45 0.00 0.00 2.83
670 685 6.956202 TTCGGGTCCTTTTACAATTTGTTA 57.044 33.333 7.45 0.00 0.00 2.41
671 686 7.527568 TTCGGGTCCTTTTACAATTTGTTAT 57.472 32.000 7.45 0.00 0.00 1.89
672 687 6.915349 TCGGGTCCTTTTACAATTTGTTATG 58.085 36.000 7.45 0.00 0.00 1.90
673 688 6.490721 TCGGGTCCTTTTACAATTTGTTATGT 59.509 34.615 7.45 0.00 0.00 2.29
674 689 7.664731 TCGGGTCCTTTTACAATTTGTTATGTA 59.335 33.333 7.45 0.00 0.00 2.29
675 690 7.751793 CGGGTCCTTTTACAATTTGTTATGTAC 59.248 37.037 7.45 0.63 32.07 2.90
676 691 8.030692 GGGTCCTTTTACAATTTGTTATGTACC 58.969 37.037 7.45 8.72 32.07 3.34
677 692 8.578151 GGTCCTTTTACAATTTGTTATGTACCA 58.422 33.333 7.45 0.00 32.07 3.25
678 693 9.401873 GTCCTTTTACAATTTGTTATGTACCAC 57.598 33.333 7.45 0.00 32.07 4.16
679 694 8.578151 TCCTTTTACAATTTGTTATGTACCACC 58.422 33.333 7.45 0.00 32.07 4.61
680 695 7.539366 CCTTTTACAATTTGTTATGTACCACCG 59.461 37.037 7.45 0.00 32.07 4.94
681 696 6.497785 TTACAATTTGTTATGTACCACCGG 57.502 37.500 7.45 0.00 32.07 5.28
682 697 4.400120 ACAATTTGTTATGTACCACCGGT 58.600 39.130 0.00 0.00 40.16 5.28
683 698 4.828387 ACAATTTGTTATGTACCACCGGTT 59.172 37.500 2.97 0.00 37.09 4.44
684 699 5.048573 ACAATTTGTTATGTACCACCGGTTC 60.049 40.000 2.97 0.00 37.09 3.62
685 700 4.354893 TTTGTTATGTACCACCGGTTCT 57.645 40.909 2.97 0.00 37.09 3.01
686 701 4.354893 TTGTTATGTACCACCGGTTCTT 57.645 40.909 2.97 0.00 37.09 2.52
687 702 4.354893 TGTTATGTACCACCGGTTCTTT 57.645 40.909 2.97 0.00 37.09 2.52
688 703 4.317488 TGTTATGTACCACCGGTTCTTTC 58.683 43.478 2.97 0.00 37.09 2.62
689 704 4.040706 TGTTATGTACCACCGGTTCTTTCT 59.959 41.667 2.97 0.00 37.09 2.52
690 705 2.536761 TGTACCACCGGTTCTTTCTG 57.463 50.000 2.97 0.00 37.09 3.02
691 706 1.071071 TGTACCACCGGTTCTTTCTGG 59.929 52.381 2.97 3.34 37.09 3.86
692 707 0.688487 TACCACCGGTTCTTTCTGGG 59.312 55.000 2.97 2.34 37.09 4.45
693 708 1.350310 ACCACCGGTTCTTTCTGGGT 61.350 55.000 2.97 3.15 38.12 4.51
694 709 0.605589 CCACCGGTTCTTTCTGGGTC 60.606 60.000 2.97 0.00 38.12 4.46
695 710 0.605589 CACCGGTTCTTTCTGGGTCC 60.606 60.000 2.97 0.00 38.12 4.46
696 711 0.767060 ACCGGTTCTTTCTGGGTCCT 60.767 55.000 0.00 0.00 38.12 3.85
697 712 0.400594 CCGGTTCTTTCTGGGTCCTT 59.599 55.000 0.00 0.00 0.00 3.36
698 713 1.202891 CCGGTTCTTTCTGGGTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
699 714 2.583143 CGGTTCTTTCTGGGTCCTTTT 58.417 47.619 0.00 0.00 0.00 2.27
700 715 2.293399 CGGTTCTTTCTGGGTCCTTTTG 59.707 50.000 0.00 0.00 0.00 2.44
701 716 3.296854 GGTTCTTTCTGGGTCCTTTTGT 58.703 45.455 0.00 0.00 0.00 2.83
702 717 4.466827 GGTTCTTTCTGGGTCCTTTTGTA 58.533 43.478 0.00 0.00 0.00 2.41
703 718 4.891168 GGTTCTTTCTGGGTCCTTTTGTAA 59.109 41.667 0.00 0.00 0.00 2.41
704 719 5.538813 GGTTCTTTCTGGGTCCTTTTGTAAT 59.461 40.000 0.00 0.00 0.00 1.89
705 720 6.041637 GGTTCTTTCTGGGTCCTTTTGTAATT 59.958 38.462 0.00 0.00 0.00 1.40
706 721 7.418597 GGTTCTTTCTGGGTCCTTTTGTAATTT 60.419 37.037 0.00 0.00 0.00 1.82
707 722 7.049799 TCTTTCTGGGTCCTTTTGTAATTTG 57.950 36.000 0.00 0.00 0.00 2.32
708 723 6.609616 TCTTTCTGGGTCCTTTTGTAATTTGT 59.390 34.615 0.00 0.00 0.00 2.83
709 724 6.800072 TTCTGGGTCCTTTTGTAATTTGTT 57.200 33.333 0.00 0.00 0.00 2.83
710 725 7.899648 TTCTGGGTCCTTTTGTAATTTGTTA 57.100 32.000 0.00 0.00 0.00 2.41
711 726 8.485578 TTCTGGGTCCTTTTGTAATTTGTTAT 57.514 30.769 0.00 0.00 0.00 1.89
712 727 7.891561 TCTGGGTCCTTTTGTAATTTGTTATG 58.108 34.615 0.00 0.00 0.00 1.90
713 728 7.507616 TCTGGGTCCTTTTGTAATTTGTTATGT 59.492 33.333 0.00 0.00 0.00 2.29
714 729 8.707796 TGGGTCCTTTTGTAATTTGTTATGTA 57.292 30.769 0.00 0.00 0.00 2.29
715 730 8.578151 TGGGTCCTTTTGTAATTTGTTATGTAC 58.422 33.333 0.00 0.00 0.00 2.90
716 731 8.030692 GGGTCCTTTTGTAATTTGTTATGTACC 58.969 37.037 0.00 0.00 0.00 3.34
717 732 8.578151 GGTCCTTTTGTAATTTGTTATGTACCA 58.422 33.333 0.00 0.00 0.00 3.25
720 735 9.284594 CCTTTTGTAATTTGTTATGTACCATCG 57.715 33.333 0.00 0.00 0.00 3.84
721 736 9.284594 CTTTTGTAATTTGTTATGTACCATCGG 57.715 33.333 0.00 0.00 0.00 4.18
722 737 7.925043 TTGTAATTTGTTATGTACCATCGGT 57.075 32.000 0.00 0.00 40.16 4.69
723 738 7.925043 TGTAATTTGTTATGTACCATCGGTT 57.075 32.000 0.00 0.00 37.09 4.44
724 739 8.338072 TGTAATTTGTTATGTACCATCGGTTT 57.662 30.769 0.00 0.00 37.09 3.27
725 740 8.794553 TGTAATTTGTTATGTACCATCGGTTTT 58.205 29.630 0.00 0.00 37.09 2.43
726 741 9.628746 GTAATTTGTTATGTACCATCGGTTTTT 57.371 29.630 0.00 0.00 37.09 1.94
747 762 7.459795 TTTTTCTGGGTCTTTTTGCAATTTT 57.540 28.000 0.00 0.00 0.00 1.82
748 763 7.459795 TTTTCTGGGTCTTTTTGCAATTTTT 57.540 28.000 0.00 0.00 0.00 1.94
769 784 7.989416 TTTTTATGTACCATCGGTTCTTTCT 57.011 32.000 0.00 0.00 37.09 2.52
770 785 6.978343 TTTATGTACCATCGGTTCTTTCTG 57.022 37.500 0.00 0.00 37.09 3.02
771 786 3.328382 TGTACCATCGGTTCTTTCTGG 57.672 47.619 0.00 0.00 37.09 3.86
772 787 2.027561 TGTACCATCGGTTCTTTCTGGG 60.028 50.000 0.00 0.00 37.09 4.45
773 788 1.064825 ACCATCGGTTCTTTCTGGGT 58.935 50.000 0.00 0.00 27.29 4.51
774 789 1.003233 ACCATCGGTTCTTTCTGGGTC 59.997 52.381 0.00 0.00 27.29 4.46
775 790 1.679032 CCATCGGTTCTTTCTGGGTCC 60.679 57.143 0.00 0.00 0.00 4.46
776 791 1.279271 CATCGGTTCTTTCTGGGTCCT 59.721 52.381 0.00 0.00 0.00 3.85
777 792 1.430992 TCGGTTCTTTCTGGGTCCTT 58.569 50.000 0.00 0.00 0.00 3.36
778 793 1.772453 TCGGTTCTTTCTGGGTCCTTT 59.228 47.619 0.00 0.00 0.00 3.11
779 794 2.173996 TCGGTTCTTTCTGGGTCCTTTT 59.826 45.455 0.00 0.00 0.00 2.27
780 795 2.293399 CGGTTCTTTCTGGGTCCTTTTG 59.707 50.000 0.00 0.00 0.00 2.44
781 796 2.035961 GGTTCTTTCTGGGTCCTTTTGC 59.964 50.000 0.00 0.00 0.00 3.68
782 797 2.693074 GTTCTTTCTGGGTCCTTTTGCA 59.307 45.455 0.00 0.00 0.00 4.08
783 798 3.025322 TCTTTCTGGGTCCTTTTGCAA 57.975 42.857 0.00 0.00 0.00 4.08
784 799 3.575805 TCTTTCTGGGTCCTTTTGCAAT 58.424 40.909 0.00 0.00 0.00 3.56
785 800 3.966665 TCTTTCTGGGTCCTTTTGCAATT 59.033 39.130 0.00 0.00 0.00 2.32
786 801 4.408596 TCTTTCTGGGTCCTTTTGCAATTT 59.591 37.500 0.00 0.00 0.00 1.82
787 802 3.749665 TCTGGGTCCTTTTGCAATTTG 57.250 42.857 0.00 0.00 0.00 2.32
788 803 3.037549 TCTGGGTCCTTTTGCAATTTGT 58.962 40.909 0.00 0.00 0.00 2.83
789 804 3.454082 TCTGGGTCCTTTTGCAATTTGTT 59.546 39.130 0.00 0.00 0.00 2.83
790 805 4.651503 TCTGGGTCCTTTTGCAATTTGTTA 59.348 37.500 0.00 0.00 0.00 2.41
791 806 5.306678 TCTGGGTCCTTTTGCAATTTGTTAT 59.693 36.000 0.00 0.00 0.00 1.89
792 807 5.303971 TGGGTCCTTTTGCAATTTGTTATG 58.696 37.500 0.00 0.00 0.00 1.90
793 808 5.163258 TGGGTCCTTTTGCAATTTGTTATGT 60.163 36.000 0.00 0.00 0.00 2.29
794 809 6.042093 TGGGTCCTTTTGCAATTTGTTATGTA 59.958 34.615 0.00 0.00 0.00 2.29
795 810 6.367695 GGGTCCTTTTGCAATTTGTTATGTAC 59.632 38.462 0.00 0.00 0.00 2.90
796 811 6.367695 GGTCCTTTTGCAATTTGTTATGTACC 59.632 38.462 0.00 0.00 0.00 3.34
797 812 6.926272 GTCCTTTTGCAATTTGTTATGTACCA 59.074 34.615 0.00 0.00 0.00 3.25
798 813 6.926272 TCCTTTTGCAATTTGTTATGTACCAC 59.074 34.615 0.00 0.00 0.00 4.16
799 814 6.147000 CCTTTTGCAATTTGTTATGTACCACC 59.853 38.462 0.00 0.00 0.00 4.61
800 815 4.427096 TGCAATTTGTTATGTACCACCG 57.573 40.909 0.00 0.00 0.00 4.94
801 816 3.191581 TGCAATTTGTTATGTACCACCGG 59.808 43.478 0.00 0.00 0.00 5.28
802 817 3.191791 GCAATTTGTTATGTACCACCGGT 59.808 43.478 0.00 0.00 40.16 5.28
803 818 4.321378 GCAATTTGTTATGTACCACCGGTT 60.321 41.667 2.97 0.00 37.09 4.44
804 819 5.395642 CAATTTGTTATGTACCACCGGTTC 58.604 41.667 2.97 0.00 37.09 3.62
805 820 4.354893 TTTGTTATGTACCACCGGTTCT 57.645 40.909 2.97 0.00 37.09 3.01
806 821 4.354893 TTGTTATGTACCACCGGTTCTT 57.645 40.909 2.97 0.00 37.09 2.52
807 822 4.354893 TGTTATGTACCACCGGTTCTTT 57.645 40.909 2.97 0.00 37.09 2.52
808 823 4.317488 TGTTATGTACCACCGGTTCTTTC 58.683 43.478 2.97 0.00 37.09 2.62
837 852 2.971307 TCAGTATGAATGAACGCAGCA 58.029 42.857 0.00 0.00 45.97 4.41
838 853 3.534554 TCAGTATGAATGAACGCAGCAT 58.465 40.909 0.00 0.00 45.97 3.79
839 854 3.557185 TCAGTATGAATGAACGCAGCATC 59.443 43.478 0.00 0.00 45.97 3.91
840 855 3.310501 CAGTATGAATGAACGCAGCATCA 59.689 43.478 0.60 0.60 39.69 3.07
841 856 3.558829 AGTATGAATGAACGCAGCATCAG 59.441 43.478 4.38 0.00 30.37 2.90
842 857 1.089112 TGAATGAACGCAGCATCAGG 58.911 50.000 4.38 0.00 30.37 3.86
843 858 0.379669 GAATGAACGCAGCATCAGGG 59.620 55.000 4.38 0.00 30.37 4.45
844 859 0.322816 AATGAACGCAGCATCAGGGT 60.323 50.000 4.38 0.00 30.37 4.34
845 860 0.745845 ATGAACGCAGCATCAGGGTC 60.746 55.000 4.38 0.00 30.37 4.46
846 861 1.078848 GAACGCAGCATCAGGGTCT 60.079 57.895 0.00 0.00 0.00 3.85
847 862 1.078848 AACGCAGCATCAGGGTCTC 60.079 57.895 0.00 0.00 0.00 3.36
848 863 2.202987 CGCAGCATCAGGGTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
849 864 2.191641 GCAGCATCAGGGTCTCCC 59.808 66.667 0.00 0.00 45.90 4.30
858 873 3.013631 GGGTCTCCCGTCTCCCTA 58.986 66.667 0.00 0.00 37.18 3.53
859 874 1.309006 GGGTCTCCCGTCTCCCTAA 59.691 63.158 0.00 0.00 37.18 2.69
860 875 0.325016 GGGTCTCCCGTCTCCCTAAA 60.325 60.000 0.00 0.00 37.18 1.85
861 876 1.565067 GGTCTCCCGTCTCCCTAAAA 58.435 55.000 0.00 0.00 0.00 1.52
862 877 1.904537 GGTCTCCCGTCTCCCTAAAAA 59.095 52.381 0.00 0.00 0.00 1.94
881 896 0.536460 AAAACGCAACATCGGGGTCT 60.536 50.000 0.00 0.00 0.00 3.85
888 903 1.812571 CAACATCGGGGTCTTTTCCTG 59.187 52.381 0.00 0.00 0.00 3.86
889 904 0.328258 ACATCGGGGTCTTTTCCTGG 59.672 55.000 0.00 0.00 0.00 4.45
890 905 0.618458 CATCGGGGTCTTTTCCTGGA 59.382 55.000 0.00 0.00 0.00 3.86
891 906 1.004277 CATCGGGGTCTTTTCCTGGAA 59.996 52.381 4.68 4.68 0.00 3.53
892 907 0.690762 TCGGGGTCTTTTCCTGGAAG 59.309 55.000 9.42 0.00 0.00 3.46
893 908 0.690762 CGGGGTCTTTTCCTGGAAGA 59.309 55.000 9.42 4.25 34.07 2.87
894 909 1.073284 CGGGGTCTTTTCCTGGAAGAA 59.927 52.381 9.42 6.56 35.11 2.52
895 910 2.488347 CGGGGTCTTTTCCTGGAAGAAA 60.488 50.000 9.42 1.36 35.11 2.52
896 911 3.572642 GGGGTCTTTTCCTGGAAGAAAA 58.427 45.455 9.42 0.63 42.07 2.29
897 912 3.964688 GGGGTCTTTTCCTGGAAGAAAAA 59.035 43.478 9.42 0.26 43.27 1.94
931 946 0.817013 GAGCTCACTCTCCCACTCAG 59.183 60.000 9.40 0.00 40.03 3.35
944 959 4.504916 CTCAGCCGTCGCTCCCAG 62.505 72.222 0.00 0.00 43.95 4.45
949 964 4.069232 CCGTCGCTCCCAGCAGAA 62.069 66.667 0.00 0.00 42.58 3.02
950 965 2.507992 CGTCGCTCCCAGCAGAAG 60.508 66.667 0.00 0.00 42.58 2.85
953 968 0.107945 GTCGCTCCCAGCAGAAGATT 60.108 55.000 0.00 0.00 42.58 2.40
957 972 3.118261 TCGCTCCCAGCAGAAGATTTATT 60.118 43.478 0.00 0.00 42.58 1.40
1057 1093 3.989600 TCCTGGAGGAGATCTTCATCT 57.010 47.619 3.21 0.00 42.59 2.90
1068 1104 1.203441 TCTTCATCTGCCTGCCCACT 61.203 55.000 0.00 0.00 0.00 4.00
1072 1108 1.614525 ATCTGCCTGCCCACTCTGA 60.615 57.895 0.00 0.00 0.00 3.27
1122 1158 4.077184 TCCTTCCGCCGCGTCATT 62.077 61.111 12.58 0.00 0.00 2.57
1124 1160 1.594293 CCTTCCGCCGCGTCATTAT 60.594 57.895 12.58 0.00 0.00 1.28
1188 1236 1.414061 CCCTCCTCGGCTTCATGGAT 61.414 60.000 0.00 0.00 0.00 3.41
1208 1256 2.359011 GGCCGGATTCCACCCTTT 59.641 61.111 5.05 0.00 0.00 3.11
1282 1330 0.108329 TGATTTCTCCTTCGTCCCGC 60.108 55.000 0.00 0.00 0.00 6.13
1297 1345 1.213537 CCGCCCGTCGTTTCTTCTA 59.786 57.895 0.00 0.00 36.19 2.10
1306 1354 3.181502 CGTCGTTTCTTCTACCTCCTACC 60.182 52.174 0.00 0.00 0.00 3.18
1317 1365 4.415150 TCCTACCTCGTCCCGCGT 62.415 66.667 4.92 0.00 42.13 6.01
1319 1367 3.129502 CTACCTCGTCCCGCGTGA 61.130 66.667 4.92 0.00 42.13 4.35
1404 1459 2.427889 GGATTGGATCTCCCTCTACCCA 60.428 54.545 0.00 0.00 35.38 4.51
1417 1472 2.807631 CTACCCACGTTCCGTCCACG 62.808 65.000 0.00 0.00 38.32 4.94
1439 1494 1.310933 TGGACCTACCGCGAAGACTC 61.311 60.000 8.23 2.87 42.61 3.36
1528 1583 1.303317 ACATGGACCAAACGGGAGC 60.303 57.895 0.00 0.00 41.15 4.70
1529 1584 2.046314 ATGGACCAAACGGGAGCG 60.046 61.111 0.00 0.00 41.15 5.03
1538 1593 4.626081 ACGGGAGCGCTGCAAAGT 62.626 61.111 30.47 22.30 0.00 2.66
1539 1594 2.434185 CGGGAGCGCTGCAAAGTA 60.434 61.111 30.47 0.00 0.00 2.24
1540 1595 2.456119 CGGGAGCGCTGCAAAGTAG 61.456 63.158 30.47 9.94 0.00 2.57
1541 1596 2.109126 GGGAGCGCTGCAAAGTAGG 61.109 63.158 30.47 0.00 0.00 3.18
1542 1597 2.754995 GGAGCGCTGCAAAGTAGGC 61.755 63.158 25.15 0.00 0.00 3.93
1543 1598 2.032528 AGCGCTGCAAAGTAGGCA 59.967 55.556 10.39 0.00 39.32 4.75
1544 1599 1.372087 GAGCGCTGCAAAGTAGGCAT 61.372 55.000 18.48 0.00 41.06 4.40
1545 1600 1.063166 GCGCTGCAAAGTAGGCATC 59.937 57.895 0.00 0.00 41.06 3.91
1546 1601 1.723870 CGCTGCAAAGTAGGCATCC 59.276 57.895 0.00 0.00 41.06 3.51
1547 1602 0.745845 CGCTGCAAAGTAGGCATCCT 60.746 55.000 0.00 0.00 41.06 3.24
1548 1603 1.020437 GCTGCAAAGTAGGCATCCTC 58.980 55.000 0.00 0.00 41.06 3.71
1549 1604 1.293924 CTGCAAAGTAGGCATCCTCG 58.706 55.000 0.00 0.00 41.06 4.63
1550 1605 0.613260 TGCAAAGTAGGCATCCTCGT 59.387 50.000 0.00 0.00 36.11 4.18
1551 1606 1.291132 GCAAAGTAGGCATCCTCGTC 58.709 55.000 0.00 0.00 34.61 4.20
1552 1607 1.560923 CAAAGTAGGCATCCTCGTCG 58.439 55.000 0.00 0.00 34.61 5.12
1553 1608 1.134367 CAAAGTAGGCATCCTCGTCGA 59.866 52.381 0.00 0.00 34.61 4.20
1554 1609 0.739561 AAGTAGGCATCCTCGTCGAC 59.260 55.000 5.18 5.18 34.61 4.20
1555 1610 0.107116 AGTAGGCATCCTCGTCGACT 60.107 55.000 14.70 0.00 34.61 4.18
1556 1611 0.029567 GTAGGCATCCTCGTCGACTG 59.970 60.000 14.70 5.66 34.61 3.51
1557 1612 1.725557 TAGGCATCCTCGTCGACTGC 61.726 60.000 14.70 15.48 34.61 4.40
1558 1613 2.181777 GCATCCTCGTCGACTGCA 59.818 61.111 18.59 0.86 33.13 4.41
1559 1614 1.227089 GCATCCTCGTCGACTGCAT 60.227 57.895 18.59 0.00 33.13 3.96
1560 1615 1.485838 GCATCCTCGTCGACTGCATG 61.486 60.000 18.59 11.89 33.13 4.06
1561 1616 0.873312 CATCCTCGTCGACTGCATGG 60.873 60.000 14.70 8.21 0.00 3.66
1562 1617 1.037579 ATCCTCGTCGACTGCATGGA 61.038 55.000 14.70 13.01 0.00 3.41
1563 1618 1.226802 CCTCGTCGACTGCATGGAG 60.227 63.158 13.34 13.34 0.00 3.86
1564 1619 1.875813 CTCGTCGACTGCATGGAGC 60.876 63.158 14.95 6.37 45.96 4.70
1580 1635 4.719369 GCGCGGTCTCGGTGACTT 62.719 66.667 8.83 0.00 44.74 3.01
1581 1636 2.049433 CGCGGTCTCGGTGACTTT 60.049 61.111 0.00 0.00 44.74 2.66
1582 1637 2.372690 CGCGGTCTCGGTGACTTTG 61.373 63.158 0.00 2.71 44.74 2.77
1583 1638 1.006571 GCGGTCTCGGTGACTTTGA 60.007 57.895 9.75 0.00 44.74 2.69
1584 1639 1.282930 GCGGTCTCGGTGACTTTGAC 61.283 60.000 9.75 0.00 44.74 3.18
1585 1640 0.031585 CGGTCTCGGTGACTTTGACA 59.968 55.000 9.75 0.00 44.74 3.58
1586 1641 1.537348 CGGTCTCGGTGACTTTGACAA 60.537 52.381 9.75 0.00 44.74 3.18
1587 1642 1.865340 GGTCTCGGTGACTTTGACAAC 59.135 52.381 9.75 0.00 44.74 3.32
1592 1647 2.856091 GGTGACTTTGACAACGATCG 57.144 50.000 14.88 14.88 0.00 3.69
1593 1648 2.132762 GGTGACTTTGACAACGATCGT 58.867 47.619 16.60 16.60 0.00 3.73
1594 1649 2.155155 GGTGACTTTGACAACGATCGTC 59.845 50.000 22.98 9.96 0.00 4.20
1595 1650 2.792674 GTGACTTTGACAACGATCGTCA 59.207 45.455 22.98 12.76 41.53 4.35
1596 1651 2.792674 TGACTTTGACAACGATCGTCAC 59.207 45.455 22.98 15.55 42.88 3.67
1702 1826 3.546543 CCGCCGGGCCTCAAGATA 61.547 66.667 14.55 0.00 0.00 1.98
1765 1889 1.670590 GATGGAGAGGATGAGCCCG 59.329 63.158 0.00 0.00 37.37 6.13
1800 1924 5.840715 TGCTTTGCAAGATACATGACAAAA 58.159 33.333 0.00 0.00 34.76 2.44
1868 1993 0.988063 GAGTCTCCCAGCTTCCCTTT 59.012 55.000 0.00 0.00 0.00 3.11
1941 2072 4.021368 TGCTTCTACTGGACAGAACCTTAC 60.021 45.833 6.29 0.00 0.00 2.34
1948 2079 1.067071 GGACAGAACCTTACGACTGGG 60.067 57.143 0.00 0.00 35.08 4.45
1986 2117 4.152625 GACACGCGCACCATGAGC 62.153 66.667 5.73 0.00 39.86 4.26
2037 2168 1.619827 CATGAGGAGCTCAGGGATCTC 59.380 57.143 17.19 11.87 44.08 2.75
2057 2188 1.084370 CATGACCCGAGCTTTCGTCC 61.084 60.000 0.00 0.00 0.00 4.79
2059 2190 1.292541 GACCCGAGCTTTCGTCCTT 59.707 57.895 0.00 0.00 0.00 3.36
2067 2201 0.729690 GCTTTCGTCCTTGGCATCTC 59.270 55.000 0.00 0.00 0.00 2.75
2273 2415 2.727123 TCTTGTTCTTCCAAGGCACA 57.273 45.000 0.00 0.00 41.72 4.57
2336 2484 7.337689 TCAATGGAGGTCAAGACTTATGAAATG 59.662 37.037 0.00 0.00 0.00 2.32
2355 2503 1.168714 GACCATGGTCTGTTCCAAGC 58.831 55.000 33.47 7.36 41.09 4.01
2398 2546 4.526438 AGCTTGCCCTTCCATACTTTAT 57.474 40.909 0.00 0.00 0.00 1.40
2406 2554 5.633854 GCCCTTCCATACTTTATCTTCCCAA 60.634 44.000 0.00 0.00 0.00 4.12
2746 3723 4.858692 CCATTCAATTGAACGGTGATGTTC 59.141 41.667 22.28 0.00 46.63 3.18
2965 3974 3.315191 TGTGCACCTTTGTTCTTAAGCTC 59.685 43.478 15.69 0.00 0.00 4.09
2966 3975 2.548057 TGCACCTTTGTTCTTAAGCTCG 59.452 45.455 0.00 0.00 0.00 5.03
3106 4115 0.248565 TGTGTGCAGATCTGAGCTCC 59.751 55.000 27.04 8.57 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.056465 GGTTCTCTCCACCACTCTAAGTG 60.056 52.174 0.01 0.01 45.53 3.16
10 11 3.166679 GGTTCTCTCCACCACTCTAAGT 58.833 50.000 0.00 0.00 34.04 2.24
11 12 2.498078 GGGTTCTCTCCACCACTCTAAG 59.502 54.545 0.00 0.00 35.80 2.18
12 13 2.158219 TGGGTTCTCTCCACCACTCTAA 60.158 50.000 0.00 0.00 35.80 2.10
13 14 1.431633 TGGGTTCTCTCCACCACTCTA 59.568 52.381 0.00 0.00 35.80 2.43
14 15 0.191064 TGGGTTCTCTCCACCACTCT 59.809 55.000 0.00 0.00 35.80 3.24
15 16 2.759985 TGGGTTCTCTCCACCACTC 58.240 57.895 0.00 0.00 35.80 3.51
21 22 6.782988 CCTCTTTATATAGTGGGTTCTCTCCA 59.217 42.308 3.99 0.00 0.00 3.86
22 23 6.783482 ACCTCTTTATATAGTGGGTTCTCTCC 59.217 42.308 13.64 0.00 33.97 3.71
23 24 7.308710 CGACCTCTTTATATAGTGGGTTCTCTC 60.309 44.444 13.64 3.19 33.97 3.20
24 25 6.490721 CGACCTCTTTATATAGTGGGTTCTCT 59.509 42.308 13.64 0.00 33.97 3.10
25 26 6.489361 TCGACCTCTTTATATAGTGGGTTCTC 59.511 42.308 13.64 3.99 33.97 2.87
26 27 6.371278 TCGACCTCTTTATATAGTGGGTTCT 58.629 40.000 13.64 0.00 33.97 3.01
27 28 6.645790 TCGACCTCTTTATATAGTGGGTTC 57.354 41.667 13.64 4.79 33.97 3.62
28 29 6.610425 AGTTCGACCTCTTTATATAGTGGGTT 59.390 38.462 13.64 0.00 33.97 4.11
29 30 6.134754 AGTTCGACCTCTTTATATAGTGGGT 58.865 40.000 13.64 11.24 33.97 4.51
30 31 6.490721 AGAGTTCGACCTCTTTATATAGTGGG 59.509 42.308 6.68 8.85 38.69 4.61
31 32 7.513371 AGAGTTCGACCTCTTTATATAGTGG 57.487 40.000 6.68 9.07 38.69 4.00
42 43 3.892588 AGTTGAAGAAGAGTTCGACCTCT 59.107 43.478 6.68 6.68 43.65 3.69
43 44 4.245845 AGTTGAAGAAGAGTTCGACCTC 57.754 45.455 0.97 0.97 40.48 3.85
44 45 4.501743 GGAAGTTGAAGAAGAGTTCGACCT 60.502 45.833 0.00 0.00 40.48 3.85
45 46 3.741856 GGAAGTTGAAGAAGAGTTCGACC 59.258 47.826 0.00 0.00 40.48 4.79
46 47 3.425858 CGGAAGTTGAAGAAGAGTTCGAC 59.574 47.826 0.00 0.00 40.06 4.20
47 48 3.552273 CCGGAAGTTGAAGAAGAGTTCGA 60.552 47.826 0.00 0.00 34.02 3.71
48 49 2.731976 CCGGAAGTTGAAGAAGAGTTCG 59.268 50.000 0.00 0.00 34.02 3.95
49 50 3.067833 CCCGGAAGTTGAAGAAGAGTTC 58.932 50.000 0.73 0.00 0.00 3.01
50 51 2.224548 CCCCGGAAGTTGAAGAAGAGTT 60.225 50.000 0.73 0.00 0.00 3.01
51 52 1.348036 CCCCGGAAGTTGAAGAAGAGT 59.652 52.381 0.73 0.00 0.00 3.24
52 53 1.348036 ACCCCGGAAGTTGAAGAAGAG 59.652 52.381 0.73 0.00 0.00 2.85
53 54 1.071699 CACCCCGGAAGTTGAAGAAGA 59.928 52.381 0.73 0.00 0.00 2.87
54 55 1.523758 CACCCCGGAAGTTGAAGAAG 58.476 55.000 0.73 0.00 0.00 2.85
55 56 0.109723 CCACCCCGGAAGTTGAAGAA 59.890 55.000 0.73 0.00 36.56 2.52
56 57 1.758592 CCACCCCGGAAGTTGAAGA 59.241 57.895 0.73 0.00 36.56 2.87
57 58 1.303317 CCCACCCCGGAAGTTGAAG 60.303 63.158 0.73 0.00 36.56 3.02
58 59 1.770927 TCCCACCCCGGAAGTTGAA 60.771 57.895 0.73 0.00 36.56 2.69
59 60 2.122324 TCCCACCCCGGAAGTTGA 60.122 61.111 0.73 0.00 36.56 3.18
60 61 1.196104 TAGTCCCACCCCGGAAGTTG 61.196 60.000 0.73 0.00 36.56 3.16
61 62 0.474273 TTAGTCCCACCCCGGAAGTT 60.474 55.000 0.73 0.00 36.56 2.66
62 63 0.474273 TTTAGTCCCACCCCGGAAGT 60.474 55.000 0.73 0.00 36.56 3.01
63 64 0.035725 GTTTAGTCCCACCCCGGAAG 60.036 60.000 0.73 0.00 36.56 3.46
64 65 0.474273 AGTTTAGTCCCACCCCGGAA 60.474 55.000 0.73 0.00 36.56 4.30
65 66 0.474273 AAGTTTAGTCCCACCCCGGA 60.474 55.000 0.73 0.00 36.56 5.14
66 67 1.208776 CTAAGTTTAGTCCCACCCCGG 59.791 57.143 0.00 0.00 0.00 5.73
67 68 1.406477 GCTAAGTTTAGTCCCACCCCG 60.406 57.143 1.28 0.00 33.32 5.73
68 69 1.631898 TGCTAAGTTTAGTCCCACCCC 59.368 52.381 1.28 0.00 33.32 4.95
69 70 2.617276 GGTGCTAAGTTTAGTCCCACCC 60.617 54.545 12.47 1.50 36.37 4.61
70 71 2.039348 TGGTGCTAAGTTTAGTCCCACC 59.961 50.000 14.90 14.90 39.67 4.61
71 72 3.072211 GTGGTGCTAAGTTTAGTCCCAC 58.928 50.000 17.96 17.96 41.64 4.61
72 73 2.039348 GGTGGTGCTAAGTTTAGTCCCA 59.961 50.000 7.26 7.26 33.36 4.37
73 74 2.039348 TGGTGGTGCTAAGTTTAGTCCC 59.961 50.000 1.28 2.54 33.32 4.46
74 75 3.072211 GTGGTGGTGCTAAGTTTAGTCC 58.928 50.000 1.28 5.06 33.32 3.85
75 76 4.004196 AGTGGTGGTGCTAAGTTTAGTC 57.996 45.455 1.28 0.00 33.32 2.59
76 77 4.134563 CAAGTGGTGGTGCTAAGTTTAGT 58.865 43.478 1.28 0.00 33.32 2.24
77 78 3.058224 GCAAGTGGTGGTGCTAAGTTTAG 60.058 47.826 0.00 0.00 37.78 1.85
78 79 2.882137 GCAAGTGGTGGTGCTAAGTTTA 59.118 45.455 0.00 0.00 37.78 2.01
79 80 1.681264 GCAAGTGGTGGTGCTAAGTTT 59.319 47.619 0.00 0.00 37.78 2.66
80 81 1.318576 GCAAGTGGTGGTGCTAAGTT 58.681 50.000 0.00 0.00 37.78 2.66
81 82 0.537371 GGCAAGTGGTGGTGCTAAGT 60.537 55.000 0.00 0.00 40.70 2.24
82 83 0.537143 TGGCAAGTGGTGGTGCTAAG 60.537 55.000 0.00 0.00 40.70 2.18
83 84 0.112218 ATGGCAAGTGGTGGTGCTAA 59.888 50.000 0.00 0.00 40.70 3.09
84 85 0.112218 AATGGCAAGTGGTGGTGCTA 59.888 50.000 0.00 0.00 40.70 3.49
85 86 0.760189 AAATGGCAAGTGGTGGTGCT 60.760 50.000 0.00 0.00 40.70 4.40
86 87 0.106521 AAAATGGCAAGTGGTGGTGC 59.893 50.000 0.00 0.00 40.14 5.01
87 88 2.363680 TGTAAAATGGCAAGTGGTGGTG 59.636 45.455 0.00 0.00 0.00 4.17
88 89 2.364002 GTGTAAAATGGCAAGTGGTGGT 59.636 45.455 0.00 0.00 0.00 4.16
89 90 2.363680 TGTGTAAAATGGCAAGTGGTGG 59.636 45.455 0.00 0.00 0.00 4.61
90 91 3.724508 TGTGTAAAATGGCAAGTGGTG 57.275 42.857 0.00 0.00 0.00 4.17
91 92 3.006752 CCATGTGTAAAATGGCAAGTGGT 59.993 43.478 0.00 0.00 46.64 4.16
92 93 3.587923 CCATGTGTAAAATGGCAAGTGG 58.412 45.455 0.00 0.00 46.64 4.00
100 101 5.389859 TCTCAAAGCCCATGTGTAAAATG 57.610 39.130 0.00 0.00 0.00 2.32
101 102 6.610075 AATCTCAAAGCCCATGTGTAAAAT 57.390 33.333 0.00 0.00 0.00 1.82
102 103 6.418057 AAATCTCAAAGCCCATGTGTAAAA 57.582 33.333 0.00 0.00 0.00 1.52
103 104 5.335583 CGAAATCTCAAAGCCCATGTGTAAA 60.336 40.000 0.00 0.00 0.00 2.01
104 105 4.155826 CGAAATCTCAAAGCCCATGTGTAA 59.844 41.667 0.00 0.00 0.00 2.41
105 106 3.689161 CGAAATCTCAAAGCCCATGTGTA 59.311 43.478 0.00 0.00 0.00 2.90
106 107 2.489329 CGAAATCTCAAAGCCCATGTGT 59.511 45.455 0.00 0.00 0.00 3.72
107 108 2.159338 CCGAAATCTCAAAGCCCATGTG 60.159 50.000 0.00 0.00 0.00 3.21
108 109 2.094675 CCGAAATCTCAAAGCCCATGT 58.905 47.619 0.00 0.00 0.00 3.21
109 110 2.368439 TCCGAAATCTCAAAGCCCATG 58.632 47.619 0.00 0.00 0.00 3.66
110 111 2.806945 TCCGAAATCTCAAAGCCCAT 57.193 45.000 0.00 0.00 0.00 4.00
111 112 2.577606 TTCCGAAATCTCAAAGCCCA 57.422 45.000 0.00 0.00 0.00 5.36
112 113 4.176271 CAATTTCCGAAATCTCAAAGCCC 58.824 43.478 6.82 0.00 0.00 5.19
113 114 3.614176 GCAATTTCCGAAATCTCAAAGCC 59.386 43.478 6.82 0.00 0.00 4.35
114 115 4.488879 AGCAATTTCCGAAATCTCAAAGC 58.511 39.130 6.82 5.41 0.00 3.51
115 116 6.694411 CCATAGCAATTTCCGAAATCTCAAAG 59.306 38.462 6.82 0.00 0.00 2.77
116 117 6.405731 CCCATAGCAATTTCCGAAATCTCAAA 60.406 38.462 6.82 0.00 0.00 2.69
117 118 5.067674 CCCATAGCAATTTCCGAAATCTCAA 59.932 40.000 6.82 0.00 0.00 3.02
118 119 4.580167 CCCATAGCAATTTCCGAAATCTCA 59.420 41.667 6.82 0.00 0.00 3.27
119 120 4.557496 GCCCATAGCAATTTCCGAAATCTC 60.557 45.833 6.82 2.72 42.97 2.75
120 121 3.319122 GCCCATAGCAATTTCCGAAATCT 59.681 43.478 6.82 3.99 42.97 2.40
121 122 3.552890 GGCCCATAGCAATTTCCGAAATC 60.553 47.826 6.82 0.00 46.50 2.17
122 123 2.365293 GGCCCATAGCAATTTCCGAAAT 59.635 45.455 0.17 0.17 46.50 2.17
123 124 1.754226 GGCCCATAGCAATTTCCGAAA 59.246 47.619 0.00 0.00 46.50 3.46
124 125 1.064017 AGGCCCATAGCAATTTCCGAA 60.064 47.619 0.00 0.00 46.50 4.30
125 126 0.550914 AGGCCCATAGCAATTTCCGA 59.449 50.000 0.00 0.00 46.50 4.55
126 127 2.154462 CTAGGCCCATAGCAATTTCCG 58.846 52.381 0.00 0.00 46.50 4.30
127 128 1.889170 GCTAGGCCCATAGCAATTTCC 59.111 52.381 17.00 0.00 46.12 3.13
141 142 6.901081 ATTGTTAGAATTAATGGGCTAGGC 57.099 37.500 8.00 8.00 0.00 3.93
142 143 8.515414 GCTTATTGTTAGAATTAATGGGCTAGG 58.485 37.037 0.00 0.00 0.00 3.02
143 144 9.289782 AGCTTATTGTTAGAATTAATGGGCTAG 57.710 33.333 0.00 0.00 0.00 3.42
144 145 9.284968 GAGCTTATTGTTAGAATTAATGGGCTA 57.715 33.333 0.00 0.00 0.00 3.93
145 146 7.041098 CGAGCTTATTGTTAGAATTAATGGGCT 60.041 37.037 0.00 0.00 0.00 5.19
146 147 7.078228 CGAGCTTATTGTTAGAATTAATGGGC 58.922 38.462 0.00 0.00 0.00 5.36
147 148 7.078228 GCGAGCTTATTGTTAGAATTAATGGG 58.922 38.462 0.00 0.00 0.00 4.00
148 149 7.041098 AGGCGAGCTTATTGTTAGAATTAATGG 60.041 37.037 0.00 0.00 0.00 3.16
149 150 7.800380 CAGGCGAGCTTATTGTTAGAATTAATG 59.200 37.037 0.00 0.00 0.00 1.90
150 151 7.041098 CCAGGCGAGCTTATTGTTAGAATTAAT 60.041 37.037 0.00 0.00 0.00 1.40
151 152 6.260050 CCAGGCGAGCTTATTGTTAGAATTAA 59.740 38.462 0.00 0.00 0.00 1.40
152 153 5.758296 CCAGGCGAGCTTATTGTTAGAATTA 59.242 40.000 0.00 0.00 0.00 1.40
153 154 4.576463 CCAGGCGAGCTTATTGTTAGAATT 59.424 41.667 0.00 0.00 0.00 2.17
154 155 4.130118 CCAGGCGAGCTTATTGTTAGAAT 58.870 43.478 0.00 0.00 0.00 2.40
155 156 3.196901 TCCAGGCGAGCTTATTGTTAGAA 59.803 43.478 0.00 0.00 0.00 2.10
156 157 2.764010 TCCAGGCGAGCTTATTGTTAGA 59.236 45.455 0.00 0.00 0.00 2.10
157 158 3.179443 TCCAGGCGAGCTTATTGTTAG 57.821 47.619 0.00 0.00 0.00 2.34
158 159 3.133901 TCATCCAGGCGAGCTTATTGTTA 59.866 43.478 0.00 0.00 0.00 2.41
159 160 2.092968 TCATCCAGGCGAGCTTATTGTT 60.093 45.455 0.00 0.00 0.00 2.83
160 161 1.486310 TCATCCAGGCGAGCTTATTGT 59.514 47.619 0.00 0.00 0.00 2.71
187 188 0.035056 AAGGGAATGAAGCACCTCCG 60.035 55.000 0.00 0.00 31.69 4.63
224 225 0.391597 TCCACCACCTCGTGACTTTC 59.608 55.000 0.00 0.00 35.23 2.62
285 286 1.040339 AAGCAAGCACCGGGTTTGAA 61.040 50.000 18.83 0.00 39.82 2.69
343 344 5.188434 CCATCGGTTTATGATATGATGGCT 58.812 41.667 6.15 0.00 44.32 4.75
373 388 3.351416 GGTTGTGGAACGGGCGTC 61.351 66.667 0.00 0.00 42.39 5.19
396 411 2.145536 CAAAACTTTTGGCTCCATGGC 58.854 47.619 6.96 0.00 42.18 4.40
397 412 2.145536 GCAAAACTTTTGGCTCCATGG 58.854 47.619 4.97 4.97 34.26 3.66
398 413 2.836262 TGCAAAACTTTTGGCTCCATG 58.164 42.857 14.68 0.00 37.97 3.66
399 414 3.557228 TTGCAAAACTTTTGGCTCCAT 57.443 38.095 14.68 0.00 37.97 3.41
400 415 3.204526 CATTGCAAAACTTTTGGCTCCA 58.795 40.909 14.68 3.06 37.97 3.86
401 416 2.031769 GCATTGCAAAACTTTTGGCTCC 60.032 45.455 14.68 0.74 37.97 4.70
402 417 2.874086 AGCATTGCAAAACTTTTGGCTC 59.126 40.909 11.91 1.04 37.97 4.70
468 483 2.047179 GACTCGCCACTTGGGACC 60.047 66.667 0.00 0.00 40.01 4.46
469 484 2.432628 CGACTCGCCACTTGGGAC 60.433 66.667 0.00 0.00 40.01 4.46
486 501 1.021968 AAAACCTTATCATCGCCGGC 58.978 50.000 19.07 19.07 0.00 6.13
488 503 4.919168 TCGTATAAAACCTTATCATCGCCG 59.081 41.667 0.00 0.00 0.00 6.46
497 512 8.529476 AGCTTCTTCTTCTCGTATAAAACCTTA 58.471 33.333 0.00 0.00 0.00 2.69
500 515 7.435784 CCTAGCTTCTTCTTCTCGTATAAAACC 59.564 40.741 0.00 0.00 0.00 3.27
504 519 6.262720 GTCCCTAGCTTCTTCTTCTCGTATAA 59.737 42.308 0.00 0.00 0.00 0.98
506 521 4.581409 GTCCCTAGCTTCTTCTTCTCGTAT 59.419 45.833 0.00 0.00 0.00 3.06
520 535 1.686110 CAGAACCGGGTCCCTAGCT 60.686 63.158 18.07 0.00 0.00 3.32
533 548 6.918022 CCCAACAACAAGATAGAAAACAGAAC 59.082 38.462 0.00 0.00 0.00 3.01
536 551 5.301805 ACCCCAACAACAAGATAGAAAACAG 59.698 40.000 0.00 0.00 0.00 3.16
549 564 2.626785 TCATAGAGGACCCCAACAACA 58.373 47.619 0.00 0.00 0.00 3.33
608 623 3.922171 ACAAATTGCAAAAGGACCCAA 57.078 38.095 1.71 0.00 0.00 4.12
610 625 5.304778 ACATAACAAATTGCAAAAGGACCC 58.695 37.500 1.71 0.00 0.00 4.46
612 627 6.926272 TGGTACATAACAAATTGCAAAAGGAC 59.074 34.615 1.71 0.00 0.00 3.85
613 628 6.926272 GTGGTACATAACAAATTGCAAAAGGA 59.074 34.615 1.71 0.00 44.52 3.36
614 629 6.147000 GGTGGTACATAACAAATTGCAAAAGG 59.853 38.462 1.71 0.00 44.52 3.11
615 630 6.128956 CGGTGGTACATAACAAATTGCAAAAG 60.129 38.462 1.71 0.00 44.52 2.27
616 631 5.692204 CGGTGGTACATAACAAATTGCAAAA 59.308 36.000 1.71 0.00 44.52 2.44
617 632 5.223382 CGGTGGTACATAACAAATTGCAAA 58.777 37.500 1.71 0.00 44.52 3.68
618 633 4.321304 CCGGTGGTACATAACAAATTGCAA 60.321 41.667 0.00 0.00 44.52 4.08
619 634 3.191581 CCGGTGGTACATAACAAATTGCA 59.808 43.478 0.00 0.00 44.52 4.08
620 635 3.191791 ACCGGTGGTACATAACAAATTGC 59.808 43.478 6.12 0.00 44.52 3.56
621 636 5.182380 AGAACCGGTGGTACATAACAAATTG 59.818 40.000 8.52 0.00 44.52 2.32
622 637 5.318630 AGAACCGGTGGTACATAACAAATT 58.681 37.500 8.52 0.00 44.52 1.82
623 638 4.913784 AGAACCGGTGGTACATAACAAAT 58.086 39.130 8.52 0.00 44.52 2.32
624 639 4.354893 AGAACCGGTGGTACATAACAAA 57.645 40.909 8.52 0.00 44.52 2.83
625 640 4.354893 AAGAACCGGTGGTACATAACAA 57.645 40.909 8.52 0.00 44.52 2.83
626 641 4.354893 AAAGAACCGGTGGTACATAACA 57.645 40.909 8.52 0.00 44.52 2.41
627 642 4.143052 CGAAAAGAACCGGTGGTACATAAC 60.143 45.833 8.52 0.00 44.52 1.89
628 643 3.995705 CGAAAAGAACCGGTGGTACATAA 59.004 43.478 8.52 0.00 44.52 1.90
629 644 3.587923 CGAAAAGAACCGGTGGTACATA 58.412 45.455 8.52 0.00 44.52 2.29
630 645 2.419667 CGAAAAGAACCGGTGGTACAT 58.580 47.619 8.52 0.00 44.52 2.29
631 646 1.540797 CCGAAAAGAACCGGTGGTACA 60.541 52.381 8.52 0.00 40.78 2.90
632 647 1.150827 CCGAAAAGAACCGGTGGTAC 58.849 55.000 8.52 0.00 40.78 3.34
633 648 0.035176 CCCGAAAAGAACCGGTGGTA 59.965 55.000 8.52 0.00 43.93 3.25
634 649 1.228033 CCCGAAAAGAACCGGTGGT 60.228 57.895 8.52 0.00 43.93 4.16
635 650 1.228033 ACCCGAAAAGAACCGGTGG 60.228 57.895 8.52 4.50 43.93 4.61
636 651 1.232621 GGACCCGAAAAGAACCGGTG 61.233 60.000 8.52 0.00 43.93 4.94
637 652 1.071987 GGACCCGAAAAGAACCGGT 59.928 57.895 0.00 0.00 43.93 5.28
638 653 0.250597 AAGGACCCGAAAAGAACCGG 60.251 55.000 0.00 0.00 44.94 5.28
639 654 1.601166 AAAGGACCCGAAAAGAACCG 58.399 50.000 0.00 0.00 0.00 4.44
640 655 3.884693 TGTAAAAGGACCCGAAAAGAACC 59.115 43.478 0.00 0.00 0.00 3.62
641 656 5.503662 TTGTAAAAGGACCCGAAAAGAAC 57.496 39.130 0.00 0.00 0.00 3.01
642 657 6.718522 AATTGTAAAAGGACCCGAAAAGAA 57.281 33.333 0.00 0.00 0.00 2.52
643 658 6.097129 ACAAATTGTAAAAGGACCCGAAAAGA 59.903 34.615 0.00 0.00 0.00 2.52
644 659 6.277605 ACAAATTGTAAAAGGACCCGAAAAG 58.722 36.000 0.00 0.00 0.00 2.27
645 660 6.223351 ACAAATTGTAAAAGGACCCGAAAA 57.777 33.333 0.00 0.00 0.00 2.29
646 661 5.855740 ACAAATTGTAAAAGGACCCGAAA 57.144 34.783 0.00 0.00 0.00 3.46
647 662 5.855740 AACAAATTGTAAAAGGACCCGAA 57.144 34.783 0.00 0.00 0.00 4.30
648 663 6.490721 ACATAACAAATTGTAAAAGGACCCGA 59.509 34.615 0.00 0.00 0.00 5.14
649 664 6.683715 ACATAACAAATTGTAAAAGGACCCG 58.316 36.000 0.00 0.00 0.00 5.28
650 665 8.030692 GGTACATAACAAATTGTAAAAGGACCC 58.969 37.037 0.00 0.00 30.59 4.46
651 666 8.578151 TGGTACATAACAAATTGTAAAAGGACC 58.422 33.333 12.37 12.37 30.59 4.46
652 667 9.401873 GTGGTACATAACAAATTGTAAAAGGAC 57.598 33.333 0.00 0.00 44.52 3.85
653 668 8.578151 GGTGGTACATAACAAATTGTAAAAGGA 58.422 33.333 0.00 0.00 44.52 3.36
654 669 7.539366 CGGTGGTACATAACAAATTGTAAAAGG 59.461 37.037 0.00 0.00 44.52 3.11
655 670 7.539366 CCGGTGGTACATAACAAATTGTAAAAG 59.461 37.037 0.00 0.00 44.52 2.27
656 671 7.014038 ACCGGTGGTACATAACAAATTGTAAAA 59.986 33.333 6.12 0.00 44.52 1.52
657 672 6.489361 ACCGGTGGTACATAACAAATTGTAAA 59.511 34.615 6.12 0.00 44.52 2.01
658 673 6.002704 ACCGGTGGTACATAACAAATTGTAA 58.997 36.000 6.12 0.00 44.52 2.41
659 674 5.558818 ACCGGTGGTACATAACAAATTGTA 58.441 37.500 6.12 0.00 44.52 2.41
660 675 4.400120 ACCGGTGGTACATAACAAATTGT 58.600 39.130 6.12 0.00 44.52 2.71
661 676 5.182380 AGAACCGGTGGTACATAACAAATTG 59.818 40.000 8.52 0.00 44.52 2.32
662 677 5.318630 AGAACCGGTGGTACATAACAAATT 58.681 37.500 8.52 0.00 44.52 1.82
663 678 4.913784 AGAACCGGTGGTACATAACAAAT 58.086 39.130 8.52 0.00 44.52 2.32
664 679 4.354893 AGAACCGGTGGTACATAACAAA 57.645 40.909 8.52 0.00 44.52 2.83
665 680 4.354893 AAGAACCGGTGGTACATAACAA 57.645 40.909 8.52 0.00 44.52 2.83
666 681 4.040706 AGAAAGAACCGGTGGTACATAACA 59.959 41.667 8.52 0.00 44.52 2.41
667 682 4.390909 CAGAAAGAACCGGTGGTACATAAC 59.609 45.833 8.52 0.00 44.52 1.89
668 683 4.563993 CCAGAAAGAACCGGTGGTACATAA 60.564 45.833 8.52 0.00 44.52 1.90
669 684 3.055675 CCAGAAAGAACCGGTGGTACATA 60.056 47.826 8.52 0.00 44.52 2.29
670 685 2.290071 CCAGAAAGAACCGGTGGTACAT 60.290 50.000 8.52 0.00 44.52 2.29
671 686 1.071071 CCAGAAAGAACCGGTGGTACA 59.929 52.381 8.52 0.00 33.12 2.90
672 687 1.609841 CCCAGAAAGAACCGGTGGTAC 60.610 57.143 8.52 0.00 33.12 3.34
673 688 0.688487 CCCAGAAAGAACCGGTGGTA 59.312 55.000 8.52 0.00 33.12 3.25
674 689 1.350310 ACCCAGAAAGAACCGGTGGT 61.350 55.000 8.52 5.30 37.65 4.16
675 690 0.605589 GACCCAGAAAGAACCGGTGG 60.606 60.000 8.52 4.50 0.00 4.61
676 691 0.605589 GGACCCAGAAAGAACCGGTG 60.606 60.000 8.52 0.00 0.00 4.94
677 692 0.767060 AGGACCCAGAAAGAACCGGT 60.767 55.000 0.00 0.00 0.00 5.28
678 693 0.400594 AAGGACCCAGAAAGAACCGG 59.599 55.000 0.00 0.00 0.00 5.28
679 694 2.271944 AAAGGACCCAGAAAGAACCG 57.728 50.000 0.00 0.00 0.00 4.44
680 695 3.296854 ACAAAAGGACCCAGAAAGAACC 58.703 45.455 0.00 0.00 0.00 3.62
681 696 6.650427 ATTACAAAAGGACCCAGAAAGAAC 57.350 37.500 0.00 0.00 0.00 3.01
682 697 7.125053 ACAAATTACAAAAGGACCCAGAAAGAA 59.875 33.333 0.00 0.00 0.00 2.52
683 698 6.609616 ACAAATTACAAAAGGACCCAGAAAGA 59.390 34.615 0.00 0.00 0.00 2.52
684 699 6.816136 ACAAATTACAAAAGGACCCAGAAAG 58.184 36.000 0.00 0.00 0.00 2.62
685 700 6.800072 ACAAATTACAAAAGGACCCAGAAA 57.200 33.333 0.00 0.00 0.00 2.52
686 701 6.800072 AACAAATTACAAAAGGACCCAGAA 57.200 33.333 0.00 0.00 0.00 3.02
687 702 7.507616 ACATAACAAATTACAAAAGGACCCAGA 59.492 33.333 0.00 0.00 0.00 3.86
688 703 7.666623 ACATAACAAATTACAAAAGGACCCAG 58.333 34.615 0.00 0.00 0.00 4.45
689 704 7.604657 ACATAACAAATTACAAAAGGACCCA 57.395 32.000 0.00 0.00 0.00 4.51
690 705 8.030692 GGTACATAACAAATTACAAAAGGACCC 58.969 37.037 0.00 0.00 0.00 4.46
691 706 8.578151 TGGTACATAACAAATTACAAAAGGACC 58.422 33.333 0.00 0.00 0.00 4.46
723 738 7.459795 AAAATTGCAAAAAGACCCAGAAAAA 57.540 28.000 1.71 0.00 0.00 1.94
724 739 7.459795 AAAAATTGCAAAAAGACCCAGAAAA 57.540 28.000 1.71 0.00 0.00 2.29
752 767 2.027469 ACCCAGAAAGAACCGATGGTAC 60.027 50.000 0.00 0.00 33.12 3.34
753 768 2.235402 GACCCAGAAAGAACCGATGGTA 59.765 50.000 0.00 0.00 33.12 3.25
754 769 1.003233 GACCCAGAAAGAACCGATGGT 59.997 52.381 0.00 0.00 37.65 3.55
755 770 1.679032 GGACCCAGAAAGAACCGATGG 60.679 57.143 0.00 0.00 0.00 3.51
756 771 1.279271 AGGACCCAGAAAGAACCGATG 59.721 52.381 0.00 0.00 0.00 3.84
757 772 1.657804 AGGACCCAGAAAGAACCGAT 58.342 50.000 0.00 0.00 0.00 4.18
758 773 1.430992 AAGGACCCAGAAAGAACCGA 58.569 50.000 0.00 0.00 0.00 4.69
759 774 2.271944 AAAGGACCCAGAAAGAACCG 57.728 50.000 0.00 0.00 0.00 4.44
760 775 2.035961 GCAAAAGGACCCAGAAAGAACC 59.964 50.000 0.00 0.00 0.00 3.62
761 776 2.693074 TGCAAAAGGACCCAGAAAGAAC 59.307 45.455 0.00 0.00 0.00 3.01
762 777 3.025322 TGCAAAAGGACCCAGAAAGAA 57.975 42.857 0.00 0.00 0.00 2.52
763 778 2.746279 TGCAAAAGGACCCAGAAAGA 57.254 45.000 0.00 0.00 0.00 2.52
764 779 4.341366 AATTGCAAAAGGACCCAGAAAG 57.659 40.909 1.71 0.00 0.00 2.62
765 780 4.080638 ACAAATTGCAAAAGGACCCAGAAA 60.081 37.500 1.71 0.00 0.00 2.52
766 781 3.454082 ACAAATTGCAAAAGGACCCAGAA 59.546 39.130 1.71 0.00 0.00 3.02
767 782 3.037549 ACAAATTGCAAAAGGACCCAGA 58.962 40.909 1.71 0.00 0.00 3.86
768 783 3.473923 ACAAATTGCAAAAGGACCCAG 57.526 42.857 1.71 0.00 0.00 4.45
769 784 3.922171 AACAAATTGCAAAAGGACCCA 57.078 38.095 1.71 0.00 0.00 4.51
770 785 5.304778 ACATAACAAATTGCAAAAGGACCC 58.695 37.500 1.71 0.00 0.00 4.46
771 786 6.367695 GGTACATAACAAATTGCAAAAGGACC 59.632 38.462 1.71 0.00 0.00 4.46
772 787 6.926272 TGGTACATAACAAATTGCAAAAGGAC 59.074 34.615 1.71 0.00 0.00 3.85
773 788 6.926272 GTGGTACATAACAAATTGCAAAAGGA 59.074 34.615 1.71 0.00 44.52 3.36
774 789 6.147000 GGTGGTACATAACAAATTGCAAAAGG 59.853 38.462 1.71 0.00 44.52 3.11
775 790 6.128956 CGGTGGTACATAACAAATTGCAAAAG 60.129 38.462 1.71 0.00 44.52 2.27
776 791 5.692204 CGGTGGTACATAACAAATTGCAAAA 59.308 36.000 1.71 0.00 44.52 2.44
777 792 5.223382 CGGTGGTACATAACAAATTGCAAA 58.777 37.500 1.71 0.00 44.52 3.68
778 793 4.321304 CCGGTGGTACATAACAAATTGCAA 60.321 41.667 0.00 0.00 44.52 4.08
779 794 3.191581 CCGGTGGTACATAACAAATTGCA 59.808 43.478 0.00 0.00 44.52 4.08
780 795 3.191791 ACCGGTGGTACATAACAAATTGC 59.808 43.478 6.12 0.00 44.52 3.56
781 796 5.182380 AGAACCGGTGGTACATAACAAATTG 59.818 40.000 8.52 0.00 44.52 2.32
782 797 5.318630 AGAACCGGTGGTACATAACAAATT 58.681 37.500 8.52 0.00 44.52 1.82
783 798 4.913784 AGAACCGGTGGTACATAACAAAT 58.086 39.130 8.52 0.00 44.52 2.32
784 799 4.354893 AGAACCGGTGGTACATAACAAA 57.645 40.909 8.52 0.00 44.52 2.83
785 800 4.354893 AAGAACCGGTGGTACATAACAA 57.645 40.909 8.52 0.00 44.52 2.83
786 801 4.040706 AGAAAGAACCGGTGGTACATAACA 59.959 41.667 8.52 0.00 44.52 2.41
787 802 4.390909 CAGAAAGAACCGGTGGTACATAAC 59.609 45.833 8.52 0.00 44.52 1.89
788 803 4.563993 CCAGAAAGAACCGGTGGTACATAA 60.564 45.833 8.52 0.00 44.52 1.90
789 804 3.055675 CCAGAAAGAACCGGTGGTACATA 60.056 47.826 8.52 0.00 44.52 2.29
790 805 2.290071 CCAGAAAGAACCGGTGGTACAT 60.290 50.000 8.52 0.00 44.52 2.29
791 806 1.071071 CCAGAAAGAACCGGTGGTACA 59.929 52.381 8.52 0.00 33.12 2.90
792 807 1.609841 CCCAGAAAGAACCGGTGGTAC 60.610 57.143 8.52 0.00 33.12 3.34
793 808 0.688487 CCCAGAAAGAACCGGTGGTA 59.312 55.000 8.52 0.00 33.12 3.25
794 809 1.350310 ACCCAGAAAGAACCGGTGGT 61.350 55.000 8.52 5.30 37.65 4.16
795 810 0.605589 GACCCAGAAAGAACCGGTGG 60.606 60.000 8.52 4.50 0.00 4.61
796 811 0.605589 GGACCCAGAAAGAACCGGTG 60.606 60.000 8.52 0.00 0.00 4.94
797 812 0.767060 AGGACCCAGAAAGAACCGGT 60.767 55.000 0.00 0.00 0.00 5.28
798 813 0.400594 AAGGACCCAGAAAGAACCGG 59.599 55.000 0.00 0.00 0.00 5.28
799 814 1.071699 TGAAGGACCCAGAAAGAACCG 59.928 52.381 0.00 0.00 0.00 4.44
800 815 2.106684 ACTGAAGGACCCAGAAAGAACC 59.893 50.000 4.90 0.00 35.69 3.62
801 816 3.493767 ACTGAAGGACCCAGAAAGAAC 57.506 47.619 4.90 0.00 35.69 3.01
802 817 4.844085 TCATACTGAAGGACCCAGAAAGAA 59.156 41.667 4.90 0.00 35.69 2.52
803 818 4.425772 TCATACTGAAGGACCCAGAAAGA 58.574 43.478 4.90 0.00 35.69 2.52
804 819 4.826274 TCATACTGAAGGACCCAGAAAG 57.174 45.455 4.90 0.00 35.69 2.62
805 820 5.250543 TCATTCATACTGAAGGACCCAGAAA 59.749 40.000 4.90 0.00 41.50 2.52
806 821 4.782691 TCATTCATACTGAAGGACCCAGAA 59.217 41.667 4.90 0.00 41.50 3.02
807 822 4.361783 TCATTCATACTGAAGGACCCAGA 58.638 43.478 4.90 0.00 41.50 3.86
808 823 4.760530 TCATTCATACTGAAGGACCCAG 57.239 45.455 0.49 0.00 41.50 4.45
827 842 1.375908 GACCCTGATGCTGCGTTCA 60.376 57.895 0.00 0.14 0.00 3.18
828 843 1.078848 AGACCCTGATGCTGCGTTC 60.079 57.895 0.00 0.00 0.00 3.95
829 844 1.078848 GAGACCCTGATGCTGCGTT 60.079 57.895 0.00 0.00 0.00 4.84
830 845 2.581354 GAGACCCTGATGCTGCGT 59.419 61.111 0.00 0.00 0.00 5.24
831 846 2.202987 GGAGACCCTGATGCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
861 876 0.312729 GACCCCGATGTTGCGTTTTT 59.687 50.000 0.00 0.00 0.00 1.94
862 877 0.536460 AGACCCCGATGTTGCGTTTT 60.536 50.000 0.00 0.00 0.00 2.43
863 878 0.536460 AAGACCCCGATGTTGCGTTT 60.536 50.000 0.00 0.00 0.00 3.60
864 879 0.536460 AAAGACCCCGATGTTGCGTT 60.536 50.000 0.00 0.00 0.00 4.84
865 880 0.536460 AAAAGACCCCGATGTTGCGT 60.536 50.000 0.00 0.00 0.00 5.24
870 885 0.328258 CCAGGAAAAGACCCCGATGT 59.672 55.000 0.00 0.00 0.00 3.06
898 913 1.072331 TGAGCTCTCGGAAGCCTTTTT 59.928 47.619 16.19 0.00 43.56 1.94
899 914 0.687354 TGAGCTCTCGGAAGCCTTTT 59.313 50.000 16.19 0.00 43.56 2.27
900 915 0.036858 GTGAGCTCTCGGAAGCCTTT 60.037 55.000 16.19 0.00 43.56 3.11
901 916 0.902516 AGTGAGCTCTCGGAAGCCTT 60.903 55.000 16.19 0.00 43.56 4.35
902 917 1.304879 AGTGAGCTCTCGGAAGCCT 60.305 57.895 16.19 0.00 43.56 4.58
944 959 6.469782 TTGGATTGGGAATAAATCTTCTGC 57.530 37.500 0.00 0.00 34.95 4.26
945 960 7.267857 GGTTTGGATTGGGAATAAATCTTCTG 58.732 38.462 0.00 0.00 34.95 3.02
946 961 6.384015 GGGTTTGGATTGGGAATAAATCTTCT 59.616 38.462 0.00 0.00 34.95 2.85
947 962 6.384015 AGGGTTTGGATTGGGAATAAATCTTC 59.616 38.462 0.00 0.00 34.95 2.87
948 963 6.271537 AGGGTTTGGATTGGGAATAAATCTT 58.728 36.000 0.00 0.00 34.95 2.40
949 964 5.853700 AGGGTTTGGATTGGGAATAAATCT 58.146 37.500 0.00 0.00 34.95 2.40
950 965 5.221244 CGAGGGTTTGGATTGGGAATAAATC 60.221 44.000 0.00 0.00 34.00 2.17
953 968 3.267291 TCGAGGGTTTGGATTGGGAATAA 59.733 43.478 0.00 0.00 0.00 1.40
957 972 1.211949 GATCGAGGGTTTGGATTGGGA 59.788 52.381 0.00 0.00 0.00 4.37
1023 1059 1.216710 CAGGAGCTCGTCTGGAACC 59.783 63.158 5.82 0.00 0.00 3.62
1057 1093 2.431683 GTTCAGAGTGGGCAGGCA 59.568 61.111 0.00 0.00 0.00 4.75
1122 1158 3.986006 CGGAAGGCGCGGGCTATA 61.986 66.667 24.48 0.00 37.50 1.31
1256 1304 0.741221 GAAGGAGAAATCAGCGGCGT 60.741 55.000 9.37 0.00 0.00 5.68
1282 1330 1.135170 GGAGGTAGAAGAAACGACGGG 60.135 57.143 0.00 0.00 0.00 5.28
1317 1365 1.848932 CTTCCTCGTCGTGGTCGTCA 61.849 60.000 12.76 0.00 38.33 4.35
1319 1367 2.623915 CCTTCCTCGTCGTGGTCGT 61.624 63.158 12.76 0.00 38.33 4.34
1322 1370 3.692406 GGCCTTCCTCGTCGTGGT 61.692 66.667 12.76 0.00 0.00 4.16
1383 1438 2.261729 GGGTAGAGGGAGATCCAATCC 58.738 57.143 0.47 0.00 38.24 3.01
1417 1472 1.445582 CTTCGCGGTAGGTCCACAC 60.446 63.158 6.13 0.00 35.57 3.82
1439 1494 4.077184 TTACCTCACGGCGGGCAG 62.077 66.667 13.24 6.74 0.00 4.85
1492 1547 1.367471 TGAGGCGGTCACAGAGTTG 59.633 57.895 0.00 0.00 0.00 3.16
1528 1583 0.745845 AGGATGCCTACTTTGCAGCG 60.746 55.000 0.00 0.00 45.65 5.18
1529 1584 1.020437 GAGGATGCCTACTTTGCAGC 58.980 55.000 0.00 0.00 44.06 5.25
1530 1585 1.293924 CGAGGATGCCTACTTTGCAG 58.706 55.000 0.00 0.00 42.92 4.41
1538 1593 1.725557 GCAGTCGACGAGGATGCCTA 61.726 60.000 14.02 0.00 31.76 3.93
1539 1594 3.069980 GCAGTCGACGAGGATGCCT 62.070 63.158 14.02 0.00 36.03 4.75
1540 1595 2.583593 GCAGTCGACGAGGATGCC 60.584 66.667 14.02 0.00 0.00 4.40
1541 1596 1.227089 ATGCAGTCGACGAGGATGC 60.227 57.895 17.15 17.15 37.40 3.91
1542 1597 0.873312 CCATGCAGTCGACGAGGATG 60.873 60.000 26.58 26.58 0.00 3.51
1543 1598 1.037579 TCCATGCAGTCGACGAGGAT 61.038 55.000 10.46 10.87 0.00 3.24
1544 1599 1.657751 CTCCATGCAGTCGACGAGGA 61.658 60.000 10.46 12.60 0.00 3.71
1545 1600 1.226802 CTCCATGCAGTCGACGAGG 60.227 63.158 10.46 8.96 0.00 4.63
1546 1601 1.875813 GCTCCATGCAGTCGACGAG 60.876 63.158 10.46 10.45 42.31 4.18
1547 1602 2.181777 GCTCCATGCAGTCGACGA 59.818 61.111 10.46 0.00 42.31 4.20
1548 1603 3.250323 CGCTCCATGCAGTCGACG 61.250 66.667 10.46 6.47 43.06 5.12
1549 1604 3.558411 GCGCTCCATGCAGTCGAC 61.558 66.667 7.70 7.70 43.06 4.20
1554 1609 4.827087 AGACCGCGCTCCATGCAG 62.827 66.667 5.56 0.00 43.06 4.41
1555 1610 4.819761 GAGACCGCGCTCCATGCA 62.820 66.667 5.56 0.00 43.06 3.96
1569 1624 1.406180 TCGTTGTCAAAGTCACCGAGA 59.594 47.619 0.00 0.00 0.00 4.04
1570 1625 1.847818 TCGTTGTCAAAGTCACCGAG 58.152 50.000 0.00 0.00 0.00 4.63
1571 1626 2.400399 GATCGTTGTCAAAGTCACCGA 58.600 47.619 0.00 0.00 34.66 4.69
1572 1627 1.124297 CGATCGTTGTCAAAGTCACCG 59.876 52.381 7.03 0.00 0.00 4.94
1573 1628 2.132762 ACGATCGTTGTCAAAGTCACC 58.867 47.619 16.60 0.00 0.00 4.02
1574 1629 2.792674 TGACGATCGTTGTCAAAGTCAC 59.207 45.455 23.63 5.21 42.99 3.67
1575 1630 2.792674 GTGACGATCGTTGTCAAAGTCA 59.207 45.455 23.63 9.29 46.99 3.41
1576 1631 2.155155 GGTGACGATCGTTGTCAAAGTC 59.845 50.000 23.63 6.53 46.99 3.01
1577 1632 2.132762 GGTGACGATCGTTGTCAAAGT 58.867 47.619 23.63 0.00 46.99 2.66
1578 1633 2.856091 GGTGACGATCGTTGTCAAAG 57.144 50.000 23.63 0.00 46.99 2.77
1690 1814 1.685148 CAAAGGCTATCTTGAGGCCC 58.315 55.000 0.00 0.00 46.31 5.80
1691 1815 1.685148 CCAAAGGCTATCTTGAGGCC 58.315 55.000 0.00 0.00 42.89 5.19
1758 1882 1.138859 CATATCACCTTGACGGGCTCA 59.861 52.381 0.00 0.00 36.97 4.26
1765 1889 4.156556 TCTTGCAAAGCATATCACCTTGAC 59.843 41.667 0.00 0.00 45.70 3.18
1800 1924 3.181478 ACGAAAAGACAAAGAGGACGAGT 60.181 43.478 0.00 0.00 0.00 4.18
1878 2003 7.615757 TCAAAACAGGACATGTCTAGATCTAGA 59.384 37.037 25.54 25.54 43.00 2.43
1879 2004 7.704472 GTCAAAACAGGACATGTCTAGATCTAG 59.296 40.741 24.50 21.81 43.00 2.43
1881 2006 6.212388 AGTCAAAACAGGACATGTCTAGATCT 59.788 38.462 24.50 10.49 43.00 2.75
1882 2007 6.312426 CAGTCAAAACAGGACATGTCTAGATC 59.688 42.308 24.50 8.28 43.00 2.75
1883 2008 6.169094 CAGTCAAAACAGGACATGTCTAGAT 58.831 40.000 24.50 9.92 43.00 1.98
1885 2010 4.153117 GCAGTCAAAACAGGACATGTCTAG 59.847 45.833 24.50 18.62 43.00 2.43
1886 2011 4.065088 GCAGTCAAAACAGGACATGTCTA 58.935 43.478 24.50 0.00 43.00 2.59
1887 2012 2.880890 GCAGTCAAAACAGGACATGTCT 59.119 45.455 24.50 8.73 43.00 3.41
1957 2088 2.393768 GCGTGTCCAGCACCATCAG 61.394 63.158 0.00 0.00 44.97 2.90
1986 2117 3.441922 TGAGAAGATCGACAGTGGAGAAG 59.558 47.826 0.00 0.00 0.00 2.85
2037 2168 3.799753 CGAAAGCTCGGGTCATGG 58.200 61.111 0.00 0.00 41.57 3.66
2121 2255 1.515521 GAGCAAAGGACCCGTGTTGG 61.516 60.000 0.00 0.00 37.55 3.77
2273 2415 4.721776 TGCTCAATAGGATTACCTTCTGGT 59.278 41.667 0.00 0.00 45.36 4.00
2336 2484 1.168714 GCTTGGAACAGACCATGGTC 58.831 55.000 33.72 33.72 45.66 4.02
2341 2489 0.179020 CACCAGCTTGGAACAGACCA 60.179 55.000 8.91 0.00 40.96 4.02
2387 2535 4.472108 ACCGTTGGGAAGATAAAGTATGGA 59.528 41.667 0.00 0.00 36.97 3.41
2398 2546 2.372504 TCCAATAACACCGTTGGGAAGA 59.627 45.455 4.49 0.00 43.96 2.87
2406 2554 3.217681 AGTTGGTTCCAATAACACCGT 57.782 42.857 7.56 0.00 32.71 4.83
2965 3974 5.580691 TGTCCTAAATTGCAGAGTACAATCG 59.419 40.000 0.00 0.00 36.74 3.34
2966 3975 6.985188 TGTCCTAAATTGCAGAGTACAATC 57.015 37.500 0.00 0.00 36.74 2.67
3106 4115 2.286872 CCATAGAAGCAGCTCACAAGG 58.713 52.381 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.