Multiple sequence alignment - TraesCS7D01G549800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G549800 chr7D 100.000 2921 0 0 1 2921 634413149 634410229 0.000000e+00 5395.0
1 TraesCS7D01G549800 chr7D 86.000 250 29 5 457 702 602823977 602823730 2.230000e-66 263.0
2 TraesCS7D01G549800 chr7D 84.127 252 38 2 459 709 141179465 141179715 2.910000e-60 243.0
3 TraesCS7D01G549800 chr7B 90.929 1797 96 31 767 2535 741719488 741717731 0.000000e+00 2353.0
4 TraesCS7D01G549800 chr7B 94.271 192 9 1 266 457 741719677 741719488 2.850000e-75 292.0
5 TraesCS7D01G549800 chr7B 91.628 215 10 1 2707 2921 741717736 741717530 1.020000e-74 291.0
6 TraesCS7D01G549800 chr7A 93.919 1365 57 7 767 2126 731962194 731963537 0.000000e+00 2037.0
7 TraesCS7D01G549800 chr7A 87.607 468 42 9 1 457 731956452 731956914 1.990000e-146 529.0
8 TraesCS7D01G549800 chr7A 83.932 473 41 12 11 457 731961709 731962172 1.250000e-113 420.0
9 TraesCS7D01G549800 chr7A 90.943 265 15 5 2658 2921 731964013 731964269 5.990000e-92 348.0
10 TraesCS7D01G549800 chr5A 86.486 1147 104 31 781 1917 524217291 524218396 0.000000e+00 1212.0
11 TraesCS7D01G549800 chr5A 86.275 255 29 6 458 709 476341038 476341289 3.710000e-69 272.0
12 TraesCS7D01G549800 chr5B 86.533 1151 92 38 781 1917 496484917 496486018 0.000000e+00 1208.0
13 TraesCS7D01G549800 chr5D 90.789 912 66 10 1006 1917 412352092 412352985 0.000000e+00 1203.0
14 TraesCS7D01G549800 chr2B 87.868 272 13 2 458 709 798707257 798707528 4.730000e-78 302.0
15 TraesCS7D01G549800 chr3D 88.000 250 29 1 460 709 415715954 415715706 7.920000e-76 294.0
16 TraesCS7D01G549800 chrUn 85.938 256 30 5 458 709 230001833 230001580 4.800000e-68 268.0
17 TraesCS7D01G549800 chrUn 85.938 256 30 5 458 709 245755899 245755646 4.800000e-68 268.0
18 TraesCS7D01G549800 chr3B 86.000 250 33 2 462 709 729740402 729740153 1.730000e-67 267.0
19 TraesCS7D01G549800 chr3B 84.733 131 14 2 585 709 575094209 575094339 3.060000e-25 126.0
20 TraesCS7D01G549800 chr6B 85.375 253 29 2 457 709 712493661 712493417 3.740000e-64 255.0
21 TraesCS7D01G549800 chr2D 74.089 247 52 10 1202 1442 605910254 605910014 1.110000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G549800 chr7D 634410229 634413149 2920 True 5395.000000 5395 100.000 1 2921 1 chr7D.!!$R2 2920
1 TraesCS7D01G549800 chr7B 741717530 741719677 2147 True 978.666667 2353 92.276 266 2921 3 chr7B.!!$R1 2655
2 TraesCS7D01G549800 chr7A 731961709 731964269 2560 False 935.000000 2037 89.598 11 2921 3 chr7A.!!$F2 2910
3 TraesCS7D01G549800 chr5A 524217291 524218396 1105 False 1212.000000 1212 86.486 781 1917 1 chr5A.!!$F2 1136
4 TraesCS7D01G549800 chr5B 496484917 496486018 1101 False 1208.000000 1208 86.533 781 1917 1 chr5B.!!$F1 1136
5 TraesCS7D01G549800 chr5D 412352092 412352985 893 False 1203.000000 1203 90.789 1006 1917 1 chr5D.!!$F1 911

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 539 0.033503 GGTATCCCCAACCAACCAGG 60.034 60.0 0.0 0.0 45.67 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2413 0.183014 ATTCATCAGAGCTGGGCTGG 59.817 55.0 0.0 0.0 39.88 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.486657 CCTTTTTCCAGTTAGAGATGACAACA 59.513 38.462 0.00 0.00 0.00 3.33
59 60 7.175641 CCTTTTTCCAGTTAGAGATGACAACAT 59.824 37.037 0.00 0.00 39.67 2.71
79 80 8.103305 ACAACATAGTATCCTGACTTGAACAAT 58.897 33.333 0.00 0.00 0.00 2.71
152 153 9.587772 TTCTCTCTGTTCTAAAATATAGTGCAC 57.412 33.333 9.40 9.40 0.00 4.57
299 300 4.314522 TTGGCTCCATTTGTATCTGGAA 57.685 40.909 0.00 0.00 40.92 3.53
331 357 6.901081 ATTTCCTAAAGGAGTTTTGGTCTG 57.099 37.500 0.00 0.00 46.36 3.51
457 483 2.679837 CCACAAGACAAAGGATCCATCG 59.320 50.000 15.82 3.50 0.00 3.84
458 484 2.096496 CACAAGACAAAGGATCCATCGC 59.904 50.000 15.82 0.00 0.00 4.58
459 485 1.328680 CAAGACAAAGGATCCATCGCG 59.671 52.381 15.82 0.00 0.00 5.87
460 486 0.824109 AGACAAAGGATCCATCGCGA 59.176 50.000 13.09 13.09 0.00 5.87
461 487 1.207089 AGACAAAGGATCCATCGCGAA 59.793 47.619 15.24 0.00 0.00 4.70
462 488 1.327764 GACAAAGGATCCATCGCGAAC 59.672 52.381 15.24 2.38 0.00 3.95
464 490 0.251916 AAAGGATCCATCGCGAACCA 59.748 50.000 15.24 0.00 0.00 3.67
465 491 0.251916 AAGGATCCATCGCGAACCAA 59.748 50.000 15.24 0.00 0.00 3.67
466 492 0.462047 AGGATCCATCGCGAACCAAC 60.462 55.000 15.24 5.11 0.00 3.77
467 493 1.436983 GGATCCATCGCGAACCAACC 61.437 60.000 15.24 11.05 0.00 3.77
468 494 0.462047 GATCCATCGCGAACCAACCT 60.462 55.000 15.24 0.00 0.00 3.50
469 495 0.744414 ATCCATCGCGAACCAACCTG 60.744 55.000 15.24 4.49 0.00 4.00
470 496 1.671054 CCATCGCGAACCAACCTGT 60.671 57.895 15.24 0.00 0.00 4.00
471 497 1.497278 CATCGCGAACCAACCTGTG 59.503 57.895 15.24 0.00 0.00 3.66
484 510 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
485 511 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
486 512 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
487 513 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
488 514 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
489 515 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
490 516 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
492 518 2.092914 GGTTGGATGGTTAGAGGGACTG 60.093 54.545 0.00 0.00 41.55 3.51
493 519 2.572104 GTTGGATGGTTAGAGGGACTGT 59.428 50.000 0.00 0.00 41.55 3.55
494 520 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
495 521 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
496 522 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
497 523 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
498 524 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
499 525 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
500 526 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
511 537 2.884412 TGGTATCCCCAACCAACCA 58.116 52.632 0.00 0.00 43.99 3.67
512 538 0.701731 TGGTATCCCCAACCAACCAG 59.298 55.000 0.00 0.00 43.99 4.00
513 539 0.033503 GGTATCCCCAACCAACCAGG 60.034 60.000 0.00 0.00 45.67 4.45
514 540 0.033503 GTATCCCCAACCAACCAGGG 60.034 60.000 0.00 0.00 43.89 4.45
515 541 0.478789 TATCCCCAACCAACCAGGGT 60.479 55.000 0.00 0.00 45.04 4.34
522 548 3.821306 ACCAACCAGGGTTCAAGTC 57.179 52.632 0.00 0.00 43.89 3.01
523 549 0.185175 ACCAACCAGGGTTCAAGTCC 59.815 55.000 0.00 0.00 43.89 3.85
524 550 0.478507 CCAACCAGGGTTCAAGTCCT 59.521 55.000 0.00 0.00 36.00 3.85
525 551 1.545651 CCAACCAGGGTTCAAGTCCTC 60.546 57.143 0.00 0.00 36.00 3.71
526 552 0.396811 AACCAGGGTTCAAGTCCTCG 59.603 55.000 0.00 0.00 32.09 4.63
527 553 0.763223 ACCAGGGTTCAAGTCCTCGT 60.763 55.000 0.00 0.00 0.00 4.18
528 554 0.320771 CCAGGGTTCAAGTCCTCGTG 60.321 60.000 0.00 0.00 0.00 4.35
529 555 0.951040 CAGGGTTCAAGTCCTCGTGC 60.951 60.000 0.00 0.00 0.00 5.34
530 556 1.122019 AGGGTTCAAGTCCTCGTGCT 61.122 55.000 0.00 0.00 0.00 4.40
531 557 0.670854 GGGTTCAAGTCCTCGTGCTC 60.671 60.000 0.00 0.00 0.00 4.26
532 558 1.009389 GGTTCAAGTCCTCGTGCTCG 61.009 60.000 0.81 0.81 38.55 5.03
533 559 1.372997 TTCAAGTCCTCGTGCTCGC 60.373 57.895 2.69 0.00 36.96 5.03
534 560 2.049156 CAAGTCCTCGTGCTCGCA 60.049 61.111 2.69 0.00 36.96 5.10
535 561 1.446792 CAAGTCCTCGTGCTCGCAT 60.447 57.895 2.69 0.00 36.96 4.73
536 562 1.446792 AAGTCCTCGTGCTCGCATG 60.447 57.895 2.69 4.77 36.96 4.06
537 563 2.125912 GTCCTCGTGCTCGCATGT 60.126 61.111 10.57 0.00 36.96 3.21
538 564 1.138883 GTCCTCGTGCTCGCATGTA 59.861 57.895 10.57 0.00 36.96 2.29
539 565 0.249073 GTCCTCGTGCTCGCATGTAT 60.249 55.000 10.57 0.00 36.96 2.29
540 566 0.459899 TCCTCGTGCTCGCATGTATT 59.540 50.000 10.57 0.00 36.96 1.89
541 567 0.855349 CCTCGTGCTCGCATGTATTC 59.145 55.000 10.57 0.00 36.96 1.75
542 568 0.855349 CTCGTGCTCGCATGTATTCC 59.145 55.000 10.57 0.00 36.96 3.01
543 569 0.459899 TCGTGCTCGCATGTATTCCT 59.540 50.000 10.57 0.00 36.96 3.36
544 570 1.679153 TCGTGCTCGCATGTATTCCTA 59.321 47.619 10.57 0.00 36.96 2.94
545 571 2.054363 CGTGCTCGCATGTATTCCTAG 58.946 52.381 3.00 0.00 0.00 3.02
546 572 2.287608 CGTGCTCGCATGTATTCCTAGA 60.288 50.000 3.00 0.00 0.00 2.43
547 573 3.612717 CGTGCTCGCATGTATTCCTAGAT 60.613 47.826 3.00 0.00 0.00 1.98
548 574 4.310769 GTGCTCGCATGTATTCCTAGATT 58.689 43.478 0.00 0.00 0.00 2.40
549 575 4.752101 GTGCTCGCATGTATTCCTAGATTT 59.248 41.667 0.00 0.00 0.00 2.17
550 576 5.926542 GTGCTCGCATGTATTCCTAGATTTA 59.073 40.000 0.00 0.00 0.00 1.40
551 577 6.591834 GTGCTCGCATGTATTCCTAGATTTAT 59.408 38.462 0.00 0.00 0.00 1.40
552 578 7.118390 GTGCTCGCATGTATTCCTAGATTTATT 59.882 37.037 0.00 0.00 0.00 1.40
553 579 7.661437 TGCTCGCATGTATTCCTAGATTTATTT 59.339 33.333 0.00 0.00 0.00 1.40
554 580 8.171840 GCTCGCATGTATTCCTAGATTTATTTC 58.828 37.037 0.00 0.00 0.00 2.17
555 581 9.208022 CTCGCATGTATTCCTAGATTTATTTCA 57.792 33.333 0.00 0.00 0.00 2.69
556 582 9.208022 TCGCATGTATTCCTAGATTTATTTCAG 57.792 33.333 0.00 0.00 0.00 3.02
557 583 8.446273 CGCATGTATTCCTAGATTTATTTCAGG 58.554 37.037 0.00 0.00 0.00 3.86
558 584 9.507329 GCATGTATTCCTAGATTTATTTCAGGA 57.493 33.333 0.00 0.00 33.59 3.86
564 590 8.677148 TTCCTAGATTTATTTCAGGATTTCCG 57.323 34.615 0.00 0.00 42.08 4.30
565 591 7.224297 TCCTAGATTTATTTCAGGATTTCCGG 58.776 38.462 0.00 0.00 42.08 5.14
566 592 5.774498 AGATTTATTTCAGGATTTCCGGC 57.226 39.130 0.00 0.00 42.08 6.13
567 593 4.275936 AGATTTATTTCAGGATTTCCGGCG 59.724 41.667 0.00 0.00 42.08 6.46
568 594 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
569 595 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
570 596 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
571 597 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
572 598 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
583 609 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
584 610 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
585 611 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
586 612 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
587 613 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
588 614 1.377202 GCGCATTCAGTGGGAGGAA 60.377 57.895 0.30 0.00 43.02 3.36
589 615 0.960364 GCGCATTCAGTGGGAGGAAA 60.960 55.000 0.30 0.00 43.02 3.13
590 616 0.804989 CGCATTCAGTGGGAGGAAAC 59.195 55.000 0.00 0.00 43.02 2.78
591 617 1.881925 CGCATTCAGTGGGAGGAAACA 60.882 52.381 0.00 0.00 43.02 2.83
592 618 2.450476 GCATTCAGTGGGAGGAAACAT 58.550 47.619 0.00 0.00 0.00 2.71
593 619 2.827921 GCATTCAGTGGGAGGAAACATT 59.172 45.455 0.00 0.00 0.00 2.71
594 620 3.119352 GCATTCAGTGGGAGGAAACATTC 60.119 47.826 0.00 0.00 0.00 2.67
604 630 2.018542 GGAAACATTCCCGTCGATGA 57.981 50.000 6.11 0.00 44.30 2.92
605 631 1.664151 GGAAACATTCCCGTCGATGAC 59.336 52.381 6.11 0.00 44.30 3.06
618 644 1.947456 TCGATGACGAGGTGACTATGG 59.053 52.381 0.00 0.00 44.43 2.74
619 645 1.676529 CGATGACGAGGTGACTATGGT 59.323 52.381 0.00 0.00 44.43 3.55
620 646 2.541794 CGATGACGAGGTGACTATGGTG 60.542 54.545 0.00 0.00 44.43 4.17
621 647 2.209690 TGACGAGGTGACTATGGTGA 57.790 50.000 0.00 0.00 44.43 4.02
622 648 2.735151 TGACGAGGTGACTATGGTGAT 58.265 47.619 0.00 0.00 44.43 3.06
623 649 3.893521 TGACGAGGTGACTATGGTGATA 58.106 45.455 0.00 0.00 44.43 2.15
624 650 4.470602 TGACGAGGTGACTATGGTGATAT 58.529 43.478 0.00 0.00 44.43 1.63
625 651 4.278419 TGACGAGGTGACTATGGTGATATG 59.722 45.833 0.00 0.00 44.43 1.78
626 652 3.005897 ACGAGGTGACTATGGTGATATGC 59.994 47.826 0.00 0.00 44.43 3.14
627 653 3.615110 CGAGGTGACTATGGTGATATGCC 60.615 52.174 0.00 0.00 44.43 4.40
628 654 2.300152 AGGTGACTATGGTGATATGCCG 59.700 50.000 0.00 0.00 40.61 5.69
629 655 2.612972 GGTGACTATGGTGATATGCCGG 60.613 54.545 0.00 0.00 0.00 6.13
630 656 1.001974 TGACTATGGTGATATGCCGGC 59.998 52.381 22.73 22.73 0.00 6.13
631 657 1.276421 GACTATGGTGATATGCCGGCT 59.724 52.381 29.70 15.76 0.00 5.52
632 658 1.276421 ACTATGGTGATATGCCGGCTC 59.724 52.381 29.70 17.89 0.00 4.70
633 659 1.276138 CTATGGTGATATGCCGGCTCA 59.724 52.381 29.70 20.57 0.00 4.26
634 660 0.035881 ATGGTGATATGCCGGCTCAG 59.964 55.000 29.70 0.00 0.00 3.35
635 661 1.337384 TGGTGATATGCCGGCTCAGT 61.337 55.000 29.70 13.44 0.00 3.41
636 662 0.601311 GGTGATATGCCGGCTCAGTC 60.601 60.000 29.70 19.55 0.00 3.51
637 663 0.390860 GTGATATGCCGGCTCAGTCT 59.609 55.000 29.70 6.09 0.00 3.24
638 664 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
639 665 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
640 666 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
641 667 0.901827 TATGCCGGCTCAGTCTTTCA 59.098 50.000 29.70 2.45 0.00 2.69
642 668 0.392193 ATGCCGGCTCAGTCTTTCAG 60.392 55.000 29.70 0.00 0.00 3.02
643 669 1.293498 GCCGGCTCAGTCTTTCAGA 59.707 57.895 22.15 0.00 0.00 3.27
644 670 0.739112 GCCGGCTCAGTCTTTCAGAG 60.739 60.000 22.15 0.00 33.62 3.35
645 671 0.108424 CCGGCTCAGTCTTTCAGAGG 60.108 60.000 0.00 0.00 31.57 3.69
646 672 0.605589 CGGCTCAGTCTTTCAGAGGT 59.394 55.000 0.00 0.00 31.57 3.85
647 673 1.671261 CGGCTCAGTCTTTCAGAGGTG 60.671 57.143 0.00 0.00 31.57 4.00
648 674 1.437625 GCTCAGTCTTTCAGAGGTGC 58.562 55.000 0.00 0.00 31.57 5.01
649 675 1.001860 GCTCAGTCTTTCAGAGGTGCT 59.998 52.381 0.00 0.00 31.57 4.40
650 676 2.930455 GCTCAGTCTTTCAGAGGTGCTC 60.930 54.545 0.00 0.00 31.57 4.26
651 677 2.298446 CTCAGTCTTTCAGAGGTGCTCA 59.702 50.000 0.00 0.00 32.06 4.26
652 678 2.902486 TCAGTCTTTCAGAGGTGCTCAT 59.098 45.455 0.00 0.00 32.06 2.90
653 679 4.089361 TCAGTCTTTCAGAGGTGCTCATA 58.911 43.478 0.00 0.00 32.06 2.15
654 680 4.159321 TCAGTCTTTCAGAGGTGCTCATAG 59.841 45.833 0.00 0.00 32.06 2.23
655 681 3.450457 AGTCTTTCAGAGGTGCTCATAGG 59.550 47.826 0.00 0.00 32.06 2.57
656 682 3.449018 GTCTTTCAGAGGTGCTCATAGGA 59.551 47.826 0.00 0.00 32.06 2.94
657 683 3.703556 TCTTTCAGAGGTGCTCATAGGAG 59.296 47.826 0.00 0.00 44.33 3.69
658 684 2.836636 TCAGAGGTGCTCATAGGAGT 57.163 50.000 6.23 0.00 43.37 3.85
659 685 3.953542 TCAGAGGTGCTCATAGGAGTA 57.046 47.619 6.23 0.00 43.37 2.59
660 686 4.251103 TCAGAGGTGCTCATAGGAGTAA 57.749 45.455 6.23 0.00 43.37 2.24
661 687 4.211125 TCAGAGGTGCTCATAGGAGTAAG 58.789 47.826 6.23 0.00 43.37 2.34
662 688 3.320541 CAGAGGTGCTCATAGGAGTAAGG 59.679 52.174 6.23 0.00 43.37 2.69
663 689 3.052490 AGAGGTGCTCATAGGAGTAAGGT 60.052 47.826 6.23 0.00 43.37 3.50
664 690 3.034635 AGGTGCTCATAGGAGTAAGGTG 58.965 50.000 6.23 0.00 43.37 4.00
665 691 2.766828 GGTGCTCATAGGAGTAAGGTGT 59.233 50.000 6.23 0.00 43.37 4.16
666 692 3.430929 GGTGCTCATAGGAGTAAGGTGTG 60.431 52.174 6.23 0.00 43.37 3.82
667 693 2.168521 TGCTCATAGGAGTAAGGTGTGC 59.831 50.000 6.23 0.00 43.37 4.57
668 694 2.799917 GCTCATAGGAGTAAGGTGTGCG 60.800 54.545 6.23 0.00 43.37 5.34
669 695 2.427453 CTCATAGGAGTAAGGTGTGCGT 59.573 50.000 0.00 0.00 36.36 5.24
670 696 2.165641 TCATAGGAGTAAGGTGTGCGTG 59.834 50.000 0.00 0.00 0.00 5.34
671 697 1.624336 TAGGAGTAAGGTGTGCGTGT 58.376 50.000 0.00 0.00 0.00 4.49
672 698 0.317479 AGGAGTAAGGTGTGCGTGTC 59.683 55.000 0.00 0.00 0.00 3.67
673 699 0.317479 GGAGTAAGGTGTGCGTGTCT 59.683 55.000 0.00 0.00 0.00 3.41
674 700 1.419374 GAGTAAGGTGTGCGTGTCTG 58.581 55.000 0.00 0.00 0.00 3.51
675 701 0.600255 AGTAAGGTGTGCGTGTCTGC 60.600 55.000 0.00 0.00 0.00 4.26
676 702 1.663388 TAAGGTGTGCGTGTCTGCG 60.663 57.895 0.00 0.00 37.81 5.18
677 703 2.358193 TAAGGTGTGCGTGTCTGCGT 62.358 55.000 0.00 0.00 37.81 5.24
678 704 3.269347 GGTGTGCGTGTCTGCGTT 61.269 61.111 0.00 0.00 37.81 4.84
679 705 2.245532 GTGTGCGTGTCTGCGTTC 59.754 61.111 0.00 0.00 37.81 3.95
680 706 2.202810 TGTGCGTGTCTGCGTTCA 60.203 55.556 0.00 0.00 37.81 3.18
681 707 1.594021 TGTGCGTGTCTGCGTTCAT 60.594 52.632 0.00 0.00 37.81 2.57
682 708 0.319125 TGTGCGTGTCTGCGTTCATA 60.319 50.000 0.00 0.00 37.81 2.15
683 709 0.366871 GTGCGTGTCTGCGTTCATAG 59.633 55.000 0.00 0.00 37.81 2.23
684 710 0.735978 TGCGTGTCTGCGTTCATAGG 60.736 55.000 0.00 0.00 37.81 2.57
685 711 0.457853 GCGTGTCTGCGTTCATAGGA 60.458 55.000 0.00 0.00 0.00 2.94
686 712 1.550065 CGTGTCTGCGTTCATAGGAG 58.450 55.000 0.00 0.00 0.00 3.69
687 713 1.135373 CGTGTCTGCGTTCATAGGAGT 60.135 52.381 0.00 0.00 0.00 3.85
688 714 2.263077 GTGTCTGCGTTCATAGGAGTG 58.737 52.381 0.00 0.00 0.00 3.51
689 715 1.893137 TGTCTGCGTTCATAGGAGTGT 59.107 47.619 0.00 0.00 0.00 3.55
690 716 2.263077 GTCTGCGTTCATAGGAGTGTG 58.737 52.381 0.00 0.00 0.00 3.82
691 717 1.893137 TCTGCGTTCATAGGAGTGTGT 59.107 47.619 0.00 0.00 0.00 3.72
692 718 1.995484 CTGCGTTCATAGGAGTGTGTG 59.005 52.381 0.00 0.00 0.00 3.82
693 719 1.343142 TGCGTTCATAGGAGTGTGTGT 59.657 47.619 0.00 0.00 0.00 3.72
694 720 2.559231 TGCGTTCATAGGAGTGTGTGTA 59.441 45.455 0.00 0.00 0.00 2.90
695 721 3.194755 TGCGTTCATAGGAGTGTGTGTAT 59.805 43.478 0.00 0.00 0.00 2.29
696 722 3.551890 GCGTTCATAGGAGTGTGTGTATG 59.448 47.826 0.00 0.00 0.00 2.39
697 723 3.551890 CGTTCATAGGAGTGTGTGTATGC 59.448 47.826 0.00 0.00 0.00 3.14
698 724 3.436700 TCATAGGAGTGTGTGTATGCG 57.563 47.619 0.00 0.00 0.00 4.73
699 725 1.860950 CATAGGAGTGTGTGTATGCGC 59.139 52.381 0.00 0.00 0.00 6.09
700 726 0.179148 TAGGAGTGTGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
701 727 1.736645 GGAGTGTGTGTATGCGCGT 60.737 57.895 8.43 7.55 0.00 6.01
702 728 1.416049 GAGTGTGTGTATGCGCGTG 59.584 57.895 13.61 0.00 0.00 5.34
703 729 1.006688 AGTGTGTGTATGCGCGTGA 60.007 52.632 13.61 0.00 0.00 4.35
704 730 0.598942 AGTGTGTGTATGCGCGTGAA 60.599 50.000 13.61 0.00 0.00 3.18
705 731 0.442310 GTGTGTGTATGCGCGTGAAT 59.558 50.000 13.61 0.00 0.00 2.57
706 732 1.656594 GTGTGTGTATGCGCGTGAATA 59.343 47.619 13.61 0.00 0.00 1.75
707 733 2.284150 GTGTGTGTATGCGCGTGAATAT 59.716 45.455 13.61 0.00 0.00 1.28
708 734 2.283884 TGTGTGTATGCGCGTGAATATG 59.716 45.455 13.61 0.00 0.00 1.78
709 735 1.864082 TGTGTATGCGCGTGAATATGG 59.136 47.619 13.61 0.00 0.00 2.74
710 736 1.864711 GTGTATGCGCGTGAATATGGT 59.135 47.619 13.61 0.00 0.00 3.55
711 737 2.286833 GTGTATGCGCGTGAATATGGTT 59.713 45.455 13.61 0.00 0.00 3.67
712 738 3.491639 GTGTATGCGCGTGAATATGGTTA 59.508 43.478 13.61 0.00 0.00 2.85
713 739 4.025563 GTGTATGCGCGTGAATATGGTTAA 60.026 41.667 13.61 0.00 0.00 2.01
714 740 4.571176 TGTATGCGCGTGAATATGGTTAAA 59.429 37.500 13.61 0.00 0.00 1.52
715 741 4.624336 ATGCGCGTGAATATGGTTAAAA 57.376 36.364 8.43 0.00 0.00 1.52
716 742 4.421033 TGCGCGTGAATATGGTTAAAAA 57.579 36.364 8.43 0.00 0.00 1.94
768 794 6.367374 AAAAAGAAAAGGACAAAGGAACCA 57.633 33.333 0.00 0.00 0.00 3.67
797 823 3.217681 TCCACCCTACACCAAAGTTTC 57.782 47.619 0.00 0.00 0.00 2.78
847 873 4.392138 CCCATCATCACAATCGATCTGATG 59.608 45.833 26.15 26.15 41.78 3.07
851 877 6.342338 TCATCACAATCGATCTGATGATCT 57.658 37.500 28.51 7.19 43.39 2.75
852 878 6.157211 TCATCACAATCGATCTGATGATCTG 58.843 40.000 28.51 15.48 43.39 2.90
853 879 5.779529 TCACAATCGATCTGATGATCTGA 57.220 39.130 0.00 4.47 45.10 3.27
857 883 5.481122 ACAATCGATCTGATGATCTGATCCT 59.519 40.000 26.36 16.44 44.18 3.24
865 893 4.292643 TGATGATCTGATCCTCACTCCAA 58.707 43.478 18.00 0.00 30.52 3.53
910 947 0.820482 CAAGCATCATCATCGCCCCA 60.820 55.000 0.00 0.00 0.00 4.96
949 996 1.601419 CCAAGAACCGAGTAGGCCGA 61.601 60.000 0.00 0.00 46.52 5.54
1279 1329 1.439201 CACTACGCGACGTCGAACA 60.439 57.895 39.74 21.54 41.54 3.18
1359 1409 1.973812 GCCCTGCAACTTCCTGGTC 60.974 63.158 0.00 0.00 0.00 4.02
1791 1841 4.748679 CACGACGTCGACCGGACC 62.749 72.222 41.52 0.00 42.99 4.46
2055 2106 7.972832 TTATATTGGAGGTAATTACTTGGCG 57.027 36.000 15.05 0.00 0.00 5.69
2063 2114 3.303132 GGTAATTACTTGGCGCTTGATCG 60.303 47.826 15.05 0.00 0.00 3.69
2156 2211 1.440353 CGCGGTTGCAACTGTTAGC 60.440 57.895 33.05 24.34 42.97 3.09
2160 2215 1.440353 GTTGCAACTGTTAGCGGCG 60.440 57.895 22.36 0.51 0.00 6.46
2266 2330 9.986833 AAAGTTGTATTTTTGCAAGATGTTTTC 57.013 25.926 0.00 0.00 0.00 2.29
2267 2331 8.141835 AGTTGTATTTTTGCAAGATGTTTTCC 57.858 30.769 0.00 0.00 0.00 3.13
2342 2417 8.527567 TTTTTGTTTGTAGCAATAATACCAGC 57.472 30.769 0.00 0.00 0.00 4.85
2436 2513 2.106477 TGCAGGATAATTGCACGTGA 57.894 45.000 22.23 0.00 45.89 4.35
2487 2565 1.859080 GCTAACGAGGTTAAGATGGCG 59.141 52.381 0.00 0.00 0.00 5.69
2513 2591 1.936547 CTGGAATCGGCTACTTTGCTC 59.063 52.381 0.00 0.00 0.00 4.26
2530 2608 1.242076 CTCAGTTTCCTGGGCACTTG 58.758 55.000 0.00 0.00 39.31 3.16
2531 2609 0.178992 TCAGTTTCCTGGGCACTTGG 60.179 55.000 0.00 0.00 39.31 3.61
2532 2610 1.531602 AGTTTCCTGGGCACTTGGC 60.532 57.895 0.00 0.00 43.74 4.52
2546 2644 2.164219 CACTTGGCAAAGCACGGATAAT 59.836 45.455 0.00 0.00 36.84 1.28
2552 2650 2.221055 GCAAAGCACGGATAATACTCGG 59.779 50.000 0.00 0.00 0.00 4.63
2563 2661 4.574828 GGATAATACTCGGCATTGTGTTGT 59.425 41.667 0.00 0.00 0.00 3.32
2564 2662 5.277345 GGATAATACTCGGCATTGTGTTGTC 60.277 44.000 0.00 0.00 0.00 3.18
2582 2680 1.656095 GTCGAAATCTGTTCTCGGCAG 59.344 52.381 0.00 0.00 37.17 4.85
2583 2681 1.272490 TCGAAATCTGTTCTCGGCAGT 59.728 47.619 0.00 0.00 35.60 4.40
2587 2685 2.376808 ATCTGTTCTCGGCAGTCAAG 57.623 50.000 0.00 0.00 35.60 3.02
2594 2692 0.034059 CTCGGCAGTCAAGACTTGGT 59.966 55.000 15.13 0.44 40.20 3.67
2595 2693 0.468226 TCGGCAGTCAAGACTTGGTT 59.532 50.000 15.13 1.26 40.20 3.67
2596 2694 0.868406 CGGCAGTCAAGACTTGGTTC 59.132 55.000 15.13 6.60 40.20 3.62
2597 2695 0.868406 GGCAGTCAAGACTTGGTTCG 59.132 55.000 15.13 3.40 40.20 3.95
2598 2696 1.540363 GGCAGTCAAGACTTGGTTCGA 60.540 52.381 15.13 0.00 40.20 3.71
2599 2697 2.210116 GCAGTCAAGACTTGGTTCGAA 58.790 47.619 15.13 0.00 40.20 3.71
2600 2698 2.032808 GCAGTCAAGACTTGGTTCGAAC 60.033 50.000 20.14 20.14 40.20 3.95
2601 2699 3.458189 CAGTCAAGACTTGGTTCGAACT 58.542 45.455 26.32 7.89 40.20 3.01
2612 2710 2.064014 GGTTCGAACTTGGAAGTACGG 58.936 52.381 26.32 0.00 38.57 4.02
2623 2721 1.146358 GAAGTACGGCGGCACTCATC 61.146 60.000 13.24 5.89 0.00 2.92
2639 2751 3.439476 ACTCATCAATTTGCTGAGCACTC 59.561 43.478 23.47 0.00 42.56 3.51
2653 2765 3.244078 TGAGCACTCGACAAACACCTAAT 60.244 43.478 0.00 0.00 0.00 1.73
2654 2766 4.021807 TGAGCACTCGACAAACACCTAATA 60.022 41.667 0.00 0.00 0.00 0.98
2655 2767 4.890088 AGCACTCGACAAACACCTAATAA 58.110 39.130 0.00 0.00 0.00 1.40
2656 2768 4.929808 AGCACTCGACAAACACCTAATAAG 59.070 41.667 0.00 0.00 0.00 1.73
2660 2806 5.142061 TCGACAAACACCTAATAAGCAGA 57.858 39.130 0.00 0.00 0.00 4.26
2675 2821 6.963049 ATAAGCAGAAAACTACCACGTTAG 57.037 37.500 0.00 0.00 0.00 2.34
2678 2824 4.929808 AGCAGAAAACTACCACGTTAGATG 59.070 41.667 1.31 0.00 0.00 2.90
2715 2861 3.119628 CGACGATGCATAACGGTAAGATG 59.880 47.826 11.88 0.00 0.00 2.90
2719 2865 5.353123 ACGATGCATAACGGTAAGATGTTTT 59.647 36.000 11.88 0.00 0.00 2.43
2726 2872 7.413657 GCATAACGGTAAGATGTTTTTGCTAGA 60.414 37.037 0.00 0.00 35.19 2.43
2757 2903 0.460311 CGGTCCTTGGACGATTAGCT 59.540 55.000 12.97 0.00 0.00 3.32
2778 2924 2.024868 GTGACGCGTGGTGCATGTA 61.025 57.895 20.70 0.00 46.97 2.29
2818 2965 7.935804 TTGTTTTTGAAAGAAAGTACGTACG 57.064 32.000 19.49 15.01 0.00 3.67
2819 2966 7.059448 TGTTTTTGAAAGAAAGTACGTACGT 57.941 32.000 25.98 25.98 0.00 3.57
2820 2967 8.179148 TGTTTTTGAAAGAAAGTACGTACGTA 57.821 30.769 23.60 23.60 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.816682 TCTCTAACTGGAAAAAGGGGAATC 58.183 41.667 0.00 0.00 0.00 2.52
168 169 9.797556 ACTTTGTCAAATTTTACTAAGTTGGAC 57.202 29.630 19.80 8.19 38.09 4.02
373 399 4.238514 GTGTCTGCCTCTACAGTAGTTTG 58.761 47.826 7.50 0.00 38.84 2.93
377 403 2.164624 GTGGTGTCTGCCTCTACAGTAG 59.835 54.545 0.47 0.47 38.84 2.57
387 413 2.690778 GCCGAATGTGGTGTCTGCC 61.691 63.158 0.00 0.00 0.00 4.85
465 491 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
466 492 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
467 493 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
468 494 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
469 495 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
470 496 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
471 497 2.092914 CAGTCCCTCTAACCATCCAACC 60.093 54.545 0.00 0.00 0.00 3.77
472 498 2.572104 ACAGTCCCTCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
474 500 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
475 501 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
476 502 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
477 503 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
478 504 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
479 505 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
495 521 0.033503 CCCTGGTTGGTTGGGGATAC 60.034 60.000 0.00 0.00 41.25 2.24
496 522 0.478789 ACCCTGGTTGGTTGGGGATA 60.479 55.000 3.72 0.00 44.97 2.59
497 523 1.376249 AACCCTGGTTGGTTGGGGAT 61.376 55.000 0.00 0.00 46.76 3.85
498 524 2.015726 AACCCTGGTTGGTTGGGGA 61.016 57.895 0.00 0.00 46.76 4.81
499 525 2.612251 AACCCTGGTTGGTTGGGG 59.388 61.111 0.00 0.00 46.76 4.96
504 530 0.185175 GGACTTGAACCCTGGTTGGT 59.815 55.000 6.24 2.77 41.55 3.67
505 531 0.478507 AGGACTTGAACCCTGGTTGG 59.521 55.000 6.24 0.00 38.60 3.77
506 532 1.878102 CGAGGACTTGAACCCTGGTTG 60.878 57.143 6.24 0.00 38.60 3.77
507 533 0.396811 CGAGGACTTGAACCCTGGTT 59.603 55.000 0.07 0.07 41.54 3.67
508 534 0.763223 ACGAGGACTTGAACCCTGGT 60.763 55.000 0.00 0.00 36.80 4.00
509 535 0.320771 CACGAGGACTTGAACCCTGG 60.321 60.000 0.00 0.00 34.88 4.45
510 536 0.951040 GCACGAGGACTTGAACCCTG 60.951 60.000 0.00 0.00 31.84 4.45
511 537 1.122019 AGCACGAGGACTTGAACCCT 61.122 55.000 0.00 0.00 35.02 4.34
512 538 0.670854 GAGCACGAGGACTTGAACCC 60.671 60.000 0.00 0.00 0.00 4.11
513 539 1.009389 CGAGCACGAGGACTTGAACC 61.009 60.000 0.00 0.00 42.66 3.62
514 540 1.618640 GCGAGCACGAGGACTTGAAC 61.619 60.000 8.01 0.00 42.66 3.18
515 541 1.372997 GCGAGCACGAGGACTTGAA 60.373 57.895 8.01 0.00 42.66 2.69
516 542 1.877576 ATGCGAGCACGAGGACTTGA 61.878 55.000 8.01 0.00 42.66 3.02
517 543 1.446792 ATGCGAGCACGAGGACTTG 60.447 57.895 8.01 0.00 42.66 3.16
518 544 1.446792 CATGCGAGCACGAGGACTT 60.447 57.895 8.01 0.00 42.66 3.01
519 545 1.313091 TACATGCGAGCACGAGGACT 61.313 55.000 8.01 0.00 42.66 3.85
520 546 0.249073 ATACATGCGAGCACGAGGAC 60.249 55.000 8.01 0.00 42.66 3.85
521 547 0.459899 AATACATGCGAGCACGAGGA 59.540 50.000 8.01 0.00 42.66 3.71
522 548 0.855349 GAATACATGCGAGCACGAGG 59.145 55.000 8.01 0.00 42.66 4.63
523 549 0.855349 GGAATACATGCGAGCACGAG 59.145 55.000 8.01 0.00 42.66 4.18
524 550 0.459899 AGGAATACATGCGAGCACGA 59.540 50.000 8.01 0.00 42.66 4.35
525 551 2.054363 CTAGGAATACATGCGAGCACG 58.946 52.381 0.00 0.00 42.93 5.34
526 552 3.371102 TCTAGGAATACATGCGAGCAC 57.629 47.619 0.00 0.00 0.00 4.40
527 553 4.607293 AATCTAGGAATACATGCGAGCA 57.393 40.909 0.00 0.00 0.00 4.26
528 554 7.602517 AATAAATCTAGGAATACATGCGAGC 57.397 36.000 0.00 0.00 0.00 5.03
529 555 9.208022 TGAAATAAATCTAGGAATACATGCGAG 57.792 33.333 0.00 0.00 0.00 5.03
530 556 9.208022 CTGAAATAAATCTAGGAATACATGCGA 57.792 33.333 0.00 0.00 0.00 5.10
531 557 8.446273 CCTGAAATAAATCTAGGAATACATGCG 58.554 37.037 0.00 0.00 0.00 4.73
532 558 9.507329 TCCTGAAATAAATCTAGGAATACATGC 57.493 33.333 0.00 0.00 34.77 4.06
538 564 9.289782 CGGAAATCCTGAAATAAATCTAGGAAT 57.710 33.333 0.00 0.00 40.62 3.01
539 565 7.719633 CCGGAAATCCTGAAATAAATCTAGGAA 59.280 37.037 0.00 0.00 40.62 3.36
540 566 7.224297 CCGGAAATCCTGAAATAAATCTAGGA 58.776 38.462 0.00 0.00 41.41 2.94
541 567 6.072452 GCCGGAAATCCTGAAATAAATCTAGG 60.072 42.308 5.05 0.00 0.00 3.02
542 568 6.347725 CGCCGGAAATCCTGAAATAAATCTAG 60.348 42.308 5.05 0.00 0.00 2.43
543 569 5.468746 CGCCGGAAATCCTGAAATAAATCTA 59.531 40.000 5.05 0.00 0.00 1.98
544 570 4.275936 CGCCGGAAATCCTGAAATAAATCT 59.724 41.667 5.05 0.00 0.00 2.40
545 571 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
546 572 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
547 573 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
548 574 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
549 575 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
550 576 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
551 577 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
552 578 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
553 579 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
554 580 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
555 581 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
566 592 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
567 593 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
568 594 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
569 595 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
570 596 0.960364 TTTCCTCCCACTGAATGCGC 60.960 55.000 0.00 0.00 0.00 6.09
571 597 0.804989 GTTTCCTCCCACTGAATGCG 59.195 55.000 0.00 0.00 0.00 4.73
572 598 1.909700 TGTTTCCTCCCACTGAATGC 58.090 50.000 0.00 0.00 0.00 3.56
573 599 3.445096 GGAATGTTTCCTCCCACTGAATG 59.555 47.826 0.00 0.00 46.57 2.67
574 600 3.701664 GGAATGTTTCCTCCCACTGAAT 58.298 45.455 0.00 0.00 46.57 2.57
575 601 3.154827 GGAATGTTTCCTCCCACTGAA 57.845 47.619 0.00 0.00 46.57 3.02
576 602 2.879103 GGAATGTTTCCTCCCACTGA 57.121 50.000 0.00 0.00 46.57 3.41
597 623 2.287069 CCATAGTCACCTCGTCATCGAC 60.287 54.545 0.00 0.00 41.35 4.20
598 624 1.947456 CCATAGTCACCTCGTCATCGA 59.053 52.381 0.00 0.00 44.12 3.59
599 625 1.676529 ACCATAGTCACCTCGTCATCG 59.323 52.381 0.00 0.00 38.55 3.84
600 626 2.688446 TCACCATAGTCACCTCGTCATC 59.312 50.000 0.00 0.00 0.00 2.92
601 627 2.735151 TCACCATAGTCACCTCGTCAT 58.265 47.619 0.00 0.00 0.00 3.06
602 628 2.209690 TCACCATAGTCACCTCGTCA 57.790 50.000 0.00 0.00 0.00 4.35
603 629 4.799678 CATATCACCATAGTCACCTCGTC 58.200 47.826 0.00 0.00 0.00 4.20
604 630 3.005897 GCATATCACCATAGTCACCTCGT 59.994 47.826 0.00 0.00 0.00 4.18
605 631 3.579709 GCATATCACCATAGTCACCTCG 58.420 50.000 0.00 0.00 0.00 4.63
606 632 3.615110 CGGCATATCACCATAGTCACCTC 60.615 52.174 0.00 0.00 0.00 3.85
607 633 2.300152 CGGCATATCACCATAGTCACCT 59.700 50.000 0.00 0.00 0.00 4.00
608 634 2.612972 CCGGCATATCACCATAGTCACC 60.613 54.545 0.00 0.00 0.00 4.02
609 635 2.688507 CCGGCATATCACCATAGTCAC 58.311 52.381 0.00 0.00 0.00 3.67
610 636 1.001974 GCCGGCATATCACCATAGTCA 59.998 52.381 24.80 0.00 0.00 3.41
611 637 1.276421 AGCCGGCATATCACCATAGTC 59.724 52.381 31.54 0.00 0.00 2.59
612 638 1.276421 GAGCCGGCATATCACCATAGT 59.724 52.381 31.54 1.45 0.00 2.12
613 639 1.276138 TGAGCCGGCATATCACCATAG 59.724 52.381 31.54 0.00 0.00 2.23
614 640 1.276138 CTGAGCCGGCATATCACCATA 59.724 52.381 31.54 0.00 0.00 2.74
615 641 0.035881 CTGAGCCGGCATATCACCAT 59.964 55.000 31.54 3.33 0.00 3.55
616 642 1.337384 ACTGAGCCGGCATATCACCA 61.337 55.000 31.54 12.73 0.00 4.17
617 643 0.601311 GACTGAGCCGGCATATCACC 60.601 60.000 31.54 12.00 0.00 4.02
618 644 0.390860 AGACTGAGCCGGCATATCAC 59.609 55.000 31.54 14.88 0.00 3.06
619 645 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
620 646 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
621 647 1.486310 TGAAAGACTGAGCCGGCATAT 59.514 47.619 31.54 8.11 0.00 1.78
622 648 0.901827 TGAAAGACTGAGCCGGCATA 59.098 50.000 31.54 16.21 0.00 3.14
623 649 0.392193 CTGAAAGACTGAGCCGGCAT 60.392 55.000 31.54 14.28 34.07 4.40
624 650 1.004560 CTGAAAGACTGAGCCGGCA 60.005 57.895 31.54 7.98 34.07 5.69
625 651 0.739112 CTCTGAAAGACTGAGCCGGC 60.739 60.000 21.89 21.89 38.67 6.13
626 652 0.108424 CCTCTGAAAGACTGAGCCGG 60.108 60.000 0.00 0.00 38.67 6.13
627 653 0.605589 ACCTCTGAAAGACTGAGCCG 59.394 55.000 0.00 0.00 38.67 5.52
628 654 1.943507 GCACCTCTGAAAGACTGAGCC 60.944 57.143 0.00 0.00 38.67 4.70
629 655 1.001860 AGCACCTCTGAAAGACTGAGC 59.998 52.381 0.00 0.00 38.67 4.26
630 656 2.298446 TGAGCACCTCTGAAAGACTGAG 59.702 50.000 0.00 0.00 38.67 3.35
631 657 2.319844 TGAGCACCTCTGAAAGACTGA 58.680 47.619 0.00 0.00 38.67 3.41
632 658 2.827800 TGAGCACCTCTGAAAGACTG 57.172 50.000 0.00 0.00 38.67 3.51
633 659 3.450457 CCTATGAGCACCTCTGAAAGACT 59.550 47.826 0.00 0.00 38.67 3.24
634 660 3.449018 TCCTATGAGCACCTCTGAAAGAC 59.551 47.826 0.00 0.00 38.67 3.01
635 661 3.703556 CTCCTATGAGCACCTCTGAAAGA 59.296 47.826 0.00 0.00 43.69 2.52
636 662 3.450457 ACTCCTATGAGCACCTCTGAAAG 59.550 47.826 0.00 0.00 42.74 2.62
637 663 3.445008 ACTCCTATGAGCACCTCTGAAA 58.555 45.455 0.00 0.00 42.74 2.69
638 664 3.107402 ACTCCTATGAGCACCTCTGAA 57.893 47.619 0.00 0.00 42.74 3.02
639 665 2.836636 ACTCCTATGAGCACCTCTGA 57.163 50.000 0.00 0.00 42.74 3.27
640 666 3.320541 CCTTACTCCTATGAGCACCTCTG 59.679 52.174 0.00 0.00 42.74 3.35
641 667 3.052490 ACCTTACTCCTATGAGCACCTCT 60.052 47.826 0.00 0.00 42.74 3.69
642 668 3.068873 CACCTTACTCCTATGAGCACCTC 59.931 52.174 0.00 0.00 42.74 3.85
643 669 3.034635 CACCTTACTCCTATGAGCACCT 58.965 50.000 0.00 0.00 42.74 4.00
644 670 2.766828 ACACCTTACTCCTATGAGCACC 59.233 50.000 0.00 0.00 42.74 5.01
645 671 3.786635 CACACCTTACTCCTATGAGCAC 58.213 50.000 0.00 0.00 42.74 4.40
646 672 2.168521 GCACACCTTACTCCTATGAGCA 59.831 50.000 0.00 0.00 42.74 4.26
647 673 2.799917 CGCACACCTTACTCCTATGAGC 60.800 54.545 0.00 0.00 42.74 4.26
648 674 2.427453 ACGCACACCTTACTCCTATGAG 59.573 50.000 0.00 0.00 44.62 2.90
649 675 2.165641 CACGCACACCTTACTCCTATGA 59.834 50.000 0.00 0.00 0.00 2.15
650 676 2.094182 ACACGCACACCTTACTCCTATG 60.094 50.000 0.00 0.00 0.00 2.23
651 677 2.165845 GACACGCACACCTTACTCCTAT 59.834 50.000 0.00 0.00 0.00 2.57
652 678 1.542915 GACACGCACACCTTACTCCTA 59.457 52.381 0.00 0.00 0.00 2.94
653 679 0.317479 GACACGCACACCTTACTCCT 59.683 55.000 0.00 0.00 0.00 3.69
654 680 0.317479 AGACACGCACACCTTACTCC 59.683 55.000 0.00 0.00 0.00 3.85
655 681 1.419374 CAGACACGCACACCTTACTC 58.581 55.000 0.00 0.00 0.00 2.59
656 682 0.600255 GCAGACACGCACACCTTACT 60.600 55.000 0.00 0.00 0.00 2.24
657 683 1.860078 GCAGACACGCACACCTTAC 59.140 57.895 0.00 0.00 0.00 2.34
658 684 1.663388 CGCAGACACGCACACCTTA 60.663 57.895 0.00 0.00 0.00 2.69
659 685 2.967076 CGCAGACACGCACACCTT 60.967 61.111 0.00 0.00 0.00 3.50
660 686 3.733344 AACGCAGACACGCACACCT 62.733 57.895 0.00 0.00 36.19 4.00
661 687 3.223435 GAACGCAGACACGCACACC 62.223 63.158 0.00 0.00 36.19 4.16
662 688 1.831389 ATGAACGCAGACACGCACAC 61.831 55.000 0.00 0.00 36.19 3.82
663 689 0.319125 TATGAACGCAGACACGCACA 60.319 50.000 0.00 0.00 36.19 4.57
664 690 0.366871 CTATGAACGCAGACACGCAC 59.633 55.000 0.00 0.00 36.19 5.34
665 691 0.735978 CCTATGAACGCAGACACGCA 60.736 55.000 0.00 0.00 36.19 5.24
666 692 0.457853 TCCTATGAACGCAGACACGC 60.458 55.000 0.00 0.00 36.19 5.34
667 693 1.135373 ACTCCTATGAACGCAGACACG 60.135 52.381 0.00 0.00 39.50 4.49
668 694 2.263077 CACTCCTATGAACGCAGACAC 58.737 52.381 0.00 0.00 0.00 3.67
669 695 1.893137 ACACTCCTATGAACGCAGACA 59.107 47.619 0.00 0.00 0.00 3.41
670 696 2.263077 CACACTCCTATGAACGCAGAC 58.737 52.381 0.00 0.00 0.00 3.51
671 697 1.893137 ACACACTCCTATGAACGCAGA 59.107 47.619 0.00 0.00 0.00 4.26
672 698 1.995484 CACACACTCCTATGAACGCAG 59.005 52.381 0.00 0.00 0.00 5.18
673 699 1.343142 ACACACACTCCTATGAACGCA 59.657 47.619 0.00 0.00 0.00 5.24
674 700 2.080286 ACACACACTCCTATGAACGC 57.920 50.000 0.00 0.00 0.00 4.84
675 701 3.551890 GCATACACACACTCCTATGAACG 59.448 47.826 0.00 0.00 0.00 3.95
676 702 3.551890 CGCATACACACACTCCTATGAAC 59.448 47.826 0.00 0.00 0.00 3.18
677 703 3.780902 CGCATACACACACTCCTATGAA 58.219 45.455 0.00 0.00 0.00 2.57
678 704 2.481276 GCGCATACACACACTCCTATGA 60.481 50.000 0.30 0.00 0.00 2.15
679 705 1.860950 GCGCATACACACACTCCTATG 59.139 52.381 0.30 0.00 0.00 2.23
680 706 1.536072 CGCGCATACACACACTCCTAT 60.536 52.381 8.75 0.00 0.00 2.57
681 707 0.179148 CGCGCATACACACACTCCTA 60.179 55.000 8.75 0.00 0.00 2.94
682 708 1.446099 CGCGCATACACACACTCCT 60.446 57.895 8.75 0.00 0.00 3.69
683 709 1.736645 ACGCGCATACACACACTCC 60.737 57.895 5.73 0.00 0.00 3.85
684 710 1.006825 TCACGCGCATACACACACTC 61.007 55.000 5.73 0.00 0.00 3.51
685 711 0.598942 TTCACGCGCATACACACACT 60.599 50.000 5.73 0.00 0.00 3.55
686 712 0.442310 ATTCACGCGCATACACACAC 59.558 50.000 5.73 0.00 0.00 3.82
687 713 1.997669 TATTCACGCGCATACACACA 58.002 45.000 5.73 0.00 0.00 3.72
688 714 2.348498 CCATATTCACGCGCATACACAC 60.348 50.000 5.73 0.00 0.00 3.82
689 715 1.864082 CCATATTCACGCGCATACACA 59.136 47.619 5.73 0.00 0.00 3.72
690 716 1.864711 ACCATATTCACGCGCATACAC 59.135 47.619 5.73 0.00 0.00 2.90
691 717 2.232756 ACCATATTCACGCGCATACA 57.767 45.000 5.73 0.00 0.00 2.29
692 718 4.718858 TTAACCATATTCACGCGCATAC 57.281 40.909 5.73 0.00 0.00 2.39
693 719 5.736486 TTTTAACCATATTCACGCGCATA 57.264 34.783 5.73 0.03 0.00 3.14
694 720 4.624336 TTTTAACCATATTCACGCGCAT 57.376 36.364 5.73 0.00 0.00 4.73
695 721 4.421033 TTTTTAACCATATTCACGCGCA 57.579 36.364 5.73 0.00 0.00 6.09
745 771 6.367374 TGGTTCCTTTGTCCTTTTCTTTTT 57.633 33.333 0.00 0.00 0.00 1.94
746 772 6.408092 GGATGGTTCCTTTGTCCTTTTCTTTT 60.408 38.462 0.00 0.00 39.14 2.27
747 773 5.070446 GGATGGTTCCTTTGTCCTTTTCTTT 59.930 40.000 0.00 0.00 39.14 2.52
748 774 4.588951 GGATGGTTCCTTTGTCCTTTTCTT 59.411 41.667 0.00 0.00 39.14 2.52
749 775 4.152647 GGATGGTTCCTTTGTCCTTTTCT 58.847 43.478 0.00 0.00 39.14 2.52
750 776 3.895041 TGGATGGTTCCTTTGTCCTTTTC 59.105 43.478 0.00 0.00 43.07 2.29
751 777 3.922375 TGGATGGTTCCTTTGTCCTTTT 58.078 40.909 0.00 0.00 43.07 2.27
752 778 3.611025 TGGATGGTTCCTTTGTCCTTT 57.389 42.857 0.00 0.00 43.07 3.11
753 779 3.564352 GGATGGATGGTTCCTTTGTCCTT 60.564 47.826 0.00 0.00 43.07 3.36
754 780 2.024941 GGATGGATGGTTCCTTTGTCCT 60.025 50.000 0.00 0.00 43.07 3.85
755 781 2.291540 TGGATGGATGGTTCCTTTGTCC 60.292 50.000 0.00 0.00 43.07 4.02
756 782 3.085952 TGGATGGATGGTTCCTTTGTC 57.914 47.619 0.00 0.00 43.07 3.18
757 783 3.628257 GGATGGATGGATGGTTCCTTTGT 60.628 47.826 0.00 0.00 43.07 2.83
758 784 2.961062 GGATGGATGGATGGTTCCTTTG 59.039 50.000 0.00 0.00 43.07 2.77
759 785 2.586838 TGGATGGATGGATGGTTCCTTT 59.413 45.455 0.00 0.00 43.07 3.11
760 786 2.091665 GTGGATGGATGGATGGTTCCTT 60.092 50.000 0.00 0.00 43.07 3.36
761 787 1.496429 GTGGATGGATGGATGGTTCCT 59.504 52.381 0.00 0.00 43.07 3.36
762 788 1.479389 GGTGGATGGATGGATGGTTCC 60.479 57.143 0.00 0.00 42.94 3.62
763 789 1.479389 GGGTGGATGGATGGATGGTTC 60.479 57.143 0.00 0.00 0.00 3.62
764 790 0.557729 GGGTGGATGGATGGATGGTT 59.442 55.000 0.00 0.00 0.00 3.67
765 791 0.328842 AGGGTGGATGGATGGATGGT 60.329 55.000 0.00 0.00 0.00 3.55
766 792 1.352352 GTAGGGTGGATGGATGGATGG 59.648 57.143 0.00 0.00 0.00 3.51
767 793 2.057140 TGTAGGGTGGATGGATGGATG 58.943 52.381 0.00 0.00 0.00 3.51
768 794 2.057922 GTGTAGGGTGGATGGATGGAT 58.942 52.381 0.00 0.00 0.00 3.41
797 823 2.093764 GTGATGAGGACAAGAGACCTGG 60.094 54.545 0.00 0.00 40.07 4.45
852 878 5.559148 AGATTGGTATTGGAGTGAGGATC 57.441 43.478 0.00 0.00 0.00 3.36
853 879 5.983333 AAGATTGGTATTGGAGTGAGGAT 57.017 39.130 0.00 0.00 0.00 3.24
857 883 5.175859 GTCGAAAGATTGGTATTGGAGTGA 58.824 41.667 0.00 0.00 45.19 3.41
865 893 2.093658 AGTGGCGTCGAAAGATTGGTAT 60.094 45.455 0.00 0.00 45.19 2.73
910 947 4.091549 TGGTTCGTGAGAGGTTTATAGGT 58.908 43.478 0.00 0.00 43.69 3.08
949 996 0.535102 CCACGGTTCTCCTTGTTGCT 60.535 55.000 0.00 0.00 31.99 3.91
1185 1235 2.265739 CCGCTAAGGTGCAGCTGA 59.734 61.111 20.97 11.61 36.86 4.26
1791 1841 1.592223 GGAGAACCTGTCCTCCACG 59.408 63.158 0.00 0.00 46.28 4.94
1929 1979 5.897250 TCCTGCTAGTACACTGGATGATAAA 59.103 40.000 0.00 0.00 0.00 1.40
2049 2100 2.436646 ACCCGATCAAGCGCCAAG 60.437 61.111 2.29 0.00 0.00 3.61
2055 2106 2.582498 CGACGGACCCGATCAAGC 60.582 66.667 16.07 0.00 42.83 4.01
2063 2114 1.660560 TTTCTCGATCCGACGGACCC 61.661 60.000 21.02 13.19 32.98 4.46
2136 2187 1.503818 CTAACAGTTGCAACCGCGGT 61.504 55.000 28.70 28.70 42.97 5.68
2137 2188 1.206578 CTAACAGTTGCAACCGCGG 59.793 57.895 26.86 26.86 42.97 6.46
2138 2189 1.440353 GCTAACAGTTGCAACCGCG 60.440 57.895 25.62 16.57 42.97 6.46
2143 2194 2.942879 CGCCGCTAACAGTTGCAA 59.057 55.556 0.00 0.00 0.00 4.08
2160 2215 3.443045 CGACCAGCAACCATGGGC 61.443 66.667 18.09 11.01 42.98 5.36
2241 2304 8.611757 GGAAAACATCTTGCAAAAATACAACTT 58.388 29.630 0.00 0.00 0.00 2.66
2261 2325 6.575162 TGAGCCAGATAGAAAAAGGAAAAC 57.425 37.500 0.00 0.00 0.00 2.43
2318 2393 7.093992 GGCTGGTATTATTGCTACAAACAAAA 58.906 34.615 0.00 0.00 0.00 2.44
2338 2413 0.183014 ATTCATCAGAGCTGGGCTGG 59.817 55.000 0.00 0.00 39.88 4.85
2339 2414 2.924757 TATTCATCAGAGCTGGGCTG 57.075 50.000 0.00 0.00 39.88 4.85
2340 2415 2.977580 TCATATTCATCAGAGCTGGGCT 59.022 45.455 0.00 0.00 43.88 5.19
2341 2416 3.413846 TCATATTCATCAGAGCTGGGC 57.586 47.619 0.00 0.00 0.00 5.36
2342 2417 6.709281 AGTATTCATATTCATCAGAGCTGGG 58.291 40.000 0.00 0.00 0.00 4.45
2484 2562 1.883084 CCGATTCCAGTAGTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
2487 2565 1.409427 AGTAGCCGATTCCAGTAGTGC 59.591 52.381 0.00 0.00 0.00 4.40
2525 2603 1.164411 TATCCGTGCTTTGCCAAGTG 58.836 50.000 0.00 0.00 31.86 3.16
2530 2608 2.221055 CGAGTATTATCCGTGCTTTGCC 59.779 50.000 0.00 0.00 0.00 4.52
2531 2609 2.221055 CCGAGTATTATCCGTGCTTTGC 59.779 50.000 0.00 0.00 0.00 3.68
2532 2610 2.221055 GCCGAGTATTATCCGTGCTTTG 59.779 50.000 0.00 0.00 0.00 2.77
2536 2614 2.080286 ATGCCGAGTATTATCCGTGC 57.920 50.000 0.00 0.00 0.00 5.34
2537 2615 3.184379 CACAATGCCGAGTATTATCCGTG 59.816 47.826 0.00 0.00 0.00 4.94
2538 2616 3.181469 ACACAATGCCGAGTATTATCCGT 60.181 43.478 0.00 0.00 0.00 4.69
2539 2617 3.390135 ACACAATGCCGAGTATTATCCG 58.610 45.455 0.00 0.00 0.00 4.18
2546 2644 1.000052 TCGACAACACAATGCCGAGTA 60.000 47.619 0.00 0.00 0.00 2.59
2552 2650 3.888934 ACAGATTTCGACAACACAATGC 58.111 40.909 0.00 0.00 0.00 3.56
2563 2661 1.272490 ACTGCCGAGAACAGATTTCGA 59.728 47.619 0.00 0.00 38.55 3.71
2564 2662 1.656095 GACTGCCGAGAACAGATTTCG 59.344 52.381 0.00 0.00 38.55 3.46
2567 2665 2.300152 TCTTGACTGCCGAGAACAGATT 59.700 45.455 0.00 0.00 38.55 2.40
2570 2668 1.000283 AGTCTTGACTGCCGAGAACAG 60.000 52.381 2.11 0.00 37.06 3.16
2582 2680 3.002348 CCAAGTTCGAACCAAGTCTTGAC 59.998 47.826 24.22 3.15 35.69 3.18
2583 2681 3.118555 TCCAAGTTCGAACCAAGTCTTGA 60.119 43.478 24.22 7.55 35.69 3.02
2587 2685 3.203716 ACTTCCAAGTTCGAACCAAGTC 58.796 45.455 24.22 0.00 35.21 3.01
2596 2694 1.349259 CCGCCGTACTTCCAAGTTCG 61.349 60.000 10.54 10.54 45.51 3.95
2597 2695 1.632948 GCCGCCGTACTTCCAAGTTC 61.633 60.000 0.00 0.00 40.37 3.01
2598 2696 1.670083 GCCGCCGTACTTCCAAGTT 60.670 57.895 0.00 0.00 40.37 2.66
2599 2697 2.047560 GCCGCCGTACTTCCAAGT 60.048 61.111 0.00 0.00 42.91 3.16
2600 2698 2.047655 TGCCGCCGTACTTCCAAG 60.048 61.111 0.00 0.00 0.00 3.61
2601 2699 2.357760 GTGCCGCCGTACTTCCAA 60.358 61.111 0.00 0.00 0.00 3.53
2612 2710 0.171903 AGCAAATTGATGAGTGCCGC 59.828 50.000 0.00 0.00 37.73 6.53
2623 2721 1.532437 TGTCGAGTGCTCAGCAAATTG 59.468 47.619 0.00 0.00 41.47 2.32
2639 2751 5.856126 TTCTGCTTATTAGGTGTTTGTCG 57.144 39.130 0.00 0.00 0.00 4.35
2653 2765 6.088016 TCTAACGTGGTAGTTTTCTGCTTA 57.912 37.500 0.00 0.00 35.70 3.09
2654 2766 4.952460 TCTAACGTGGTAGTTTTCTGCTT 58.048 39.130 0.00 0.00 35.70 3.91
2655 2767 4.595762 TCTAACGTGGTAGTTTTCTGCT 57.404 40.909 0.00 0.00 35.70 4.24
2656 2768 4.092968 CCATCTAACGTGGTAGTTTTCTGC 59.907 45.833 0.00 0.00 35.70 4.26
2660 2806 4.687483 CGTTCCATCTAACGTGGTAGTTTT 59.313 41.667 0.00 0.00 45.46 2.43
2675 2821 0.994263 CGTTTACCGGTCGTTCCATC 59.006 55.000 12.40 0.00 35.57 3.51
2678 2824 1.337110 CGTCGTTTACCGGTCGTTCC 61.337 60.000 12.40 0.92 37.11 3.62
2687 2833 2.034339 CCGTTATGCATCGTCGTTTACC 60.034 50.000 0.19 0.00 0.00 2.85
2695 2841 4.054780 ACATCTTACCGTTATGCATCGT 57.945 40.909 0.19 0.00 0.00 3.73
2698 2844 5.804979 GCAAAAACATCTTACCGTTATGCAT 59.195 36.000 3.79 3.79 37.70 3.96
2704 2850 5.995897 ACTCTAGCAAAAACATCTTACCGTT 59.004 36.000 0.00 0.00 0.00 4.44
2715 2861 4.793028 GCTGGGTTTCACTCTAGCAAAAAC 60.793 45.833 0.00 0.00 0.00 2.43
2719 2865 1.608025 CGCTGGGTTTCACTCTAGCAA 60.608 52.381 0.00 0.00 0.00 3.91
2814 2961 4.170292 ACACACATGGAGAAGTACGTAC 57.830 45.455 18.10 18.10 0.00 3.67
2815 2962 4.521639 AGAACACACATGGAGAAGTACGTA 59.478 41.667 0.00 0.00 0.00 3.57
2816 2963 3.321111 AGAACACACATGGAGAAGTACGT 59.679 43.478 0.00 0.00 0.00 3.57
2817 2964 3.914312 AGAACACACATGGAGAAGTACG 58.086 45.455 0.00 0.00 0.00 3.67
2818 2965 4.691216 GGAAGAACACACATGGAGAAGTAC 59.309 45.833 0.00 0.00 0.00 2.73
2819 2966 4.593206 AGGAAGAACACACATGGAGAAGTA 59.407 41.667 0.00 0.00 0.00 2.24
2820 2967 3.392616 AGGAAGAACACACATGGAGAAGT 59.607 43.478 0.00 0.00 0.00 3.01
2821 2968 4.013267 AGGAAGAACACACATGGAGAAG 57.987 45.455 0.00 0.00 0.00 2.85
2867 3014 2.752358 CACCTCCCTTGCTGCTGA 59.248 61.111 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.