Multiple sequence alignment - TraesCS7D01G548500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G548500 chr7D 100.000 2708 0 0 1 2708 633952912 633950205 0.000000e+00 5001.0
1 TraesCS7D01G548500 chr7A 93.610 1299 63 11 703 1988 732401577 732402868 0.000000e+00 1921.0
2 TraesCS7D01G548500 chr7A 93.948 727 36 6 1988 2708 732402903 732403627 0.000000e+00 1092.0
3 TraesCS7D01G548500 chr7A 83.740 246 29 10 431 673 732401342 732401579 3.510000e-54 222.0
4 TraesCS7D01G548500 chr7B 95.346 795 34 1 1000 1794 742103426 742102635 0.000000e+00 1260.0
5 TraesCS7D01G548500 chr7B 95.310 725 29 2 1988 2708 742102073 742101350 0.000000e+00 1146.0
6 TraesCS7D01G548500 chr7B 82.253 586 62 22 425 998 742104020 742103465 4.080000e-128 468.0
7 TraesCS7D01G548500 chr7B 92.803 264 19 0 2445 2708 742185878 742185615 1.520000e-102 383.0
8 TraesCS7D01G548500 chr7B 95.161 186 6 1 1803 1988 742102290 742102108 9.490000e-75 291.0
9 TraesCS7D01G548500 chr6D 90.244 41 4 0 217 257 418481104 418481144 1.000000e-03 54.7
10 TraesCS7D01G548500 chr6D 100.000 28 0 0 230 257 418523136 418523163 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G548500 chr7D 633950205 633952912 2707 True 5001.000000 5001 100.000000 1 2708 1 chr7D.!!$R1 2707
1 TraesCS7D01G548500 chr7A 732401342 732403627 2285 False 1078.333333 1921 90.432667 431 2708 3 chr7A.!!$F1 2277
2 TraesCS7D01G548500 chr7B 742101350 742104020 2670 True 791.250000 1260 92.017500 425 2708 4 chr7B.!!$R2 2283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.029834 CAGCCAAATCGCCATGCTAC 59.970 55.0 0.0 0.0 0.00 3.58 F
83 84 0.041839 CAAATCGCCATGCTACTCGC 60.042 55.0 0.0 0.0 39.77 5.03 F
679 687 0.099968 ATCGACCACGTACACCATCG 59.900 55.0 0.0 0.0 40.69 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1098 1152 0.180171 CACACAGGGTGGACAACTCA 59.820 55.000 0.00 0.0 44.04 3.41 R
1337 1391 0.601046 CAGCACCTTTGTCTCGAGCA 60.601 55.000 7.81 6.5 0.00 4.26 R
2198 2628 1.067776 AGCGGAGGAACTGTAAAGACG 60.068 52.381 0.00 0.0 41.55 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.016113 CAAATAGCCTTACTTGTTCCGC 57.984 45.455 0.00 0.00 0.00 5.54
22 23 3.343941 AATAGCCTTACTTGTTCCGCA 57.656 42.857 0.00 0.00 0.00 5.69
23 24 2.380084 TAGCCTTACTTGTTCCGCAG 57.620 50.000 0.00 0.00 0.00 5.18
24 25 0.955919 AGCCTTACTTGTTCCGCAGC 60.956 55.000 0.00 0.00 0.00 5.25
25 26 1.234615 GCCTTACTTGTTCCGCAGCA 61.235 55.000 0.00 0.00 0.00 4.41
26 27 1.453155 CCTTACTTGTTCCGCAGCAT 58.547 50.000 0.00 0.00 0.00 3.79
27 28 1.812571 CCTTACTTGTTCCGCAGCATT 59.187 47.619 0.00 0.00 0.00 3.56
28 29 3.006940 CCTTACTTGTTCCGCAGCATTA 58.993 45.455 0.00 0.00 0.00 1.90
29 30 3.438781 CCTTACTTGTTCCGCAGCATTAA 59.561 43.478 0.00 0.00 0.00 1.40
30 31 4.083003 CCTTACTTGTTCCGCAGCATTAAA 60.083 41.667 0.00 0.00 0.00 1.52
31 32 5.440234 TTACTTGTTCCGCAGCATTAAAA 57.560 34.783 0.00 0.00 0.00 1.52
32 33 4.519540 ACTTGTTCCGCAGCATTAAAAT 57.480 36.364 0.00 0.00 0.00 1.82
33 34 5.637006 ACTTGTTCCGCAGCATTAAAATA 57.363 34.783 0.00 0.00 0.00 1.40
34 35 5.399013 ACTTGTTCCGCAGCATTAAAATAC 58.601 37.500 0.00 0.00 0.00 1.89
35 36 5.048364 ACTTGTTCCGCAGCATTAAAATACA 60.048 36.000 0.00 0.00 0.00 2.29
36 37 5.378292 TGTTCCGCAGCATTAAAATACAA 57.622 34.783 0.00 0.00 0.00 2.41
37 38 5.157781 TGTTCCGCAGCATTAAAATACAAC 58.842 37.500 0.00 0.00 0.00 3.32
38 39 5.157781 GTTCCGCAGCATTAAAATACAACA 58.842 37.500 0.00 0.00 0.00 3.33
39 40 4.728534 TCCGCAGCATTAAAATACAACAC 58.271 39.130 0.00 0.00 0.00 3.32
40 41 3.541916 CCGCAGCATTAAAATACAACACG 59.458 43.478 0.00 0.00 0.00 4.49
41 42 3.002149 CGCAGCATTAAAATACAACACGC 60.002 43.478 0.00 0.00 0.00 5.34
42 43 3.917380 GCAGCATTAAAATACAACACGCA 59.083 39.130 0.00 0.00 0.00 5.24
43 44 4.562394 GCAGCATTAAAATACAACACGCAT 59.438 37.500 0.00 0.00 0.00 4.73
44 45 5.741510 GCAGCATTAAAATACAACACGCATA 59.258 36.000 0.00 0.00 0.00 3.14
45 46 6.075415 GCAGCATTAAAATACAACACGCATAG 60.075 38.462 0.00 0.00 0.00 2.23
46 47 7.186128 CAGCATTAAAATACAACACGCATAGA 58.814 34.615 0.00 0.00 0.00 1.98
47 48 7.164171 CAGCATTAAAATACAACACGCATAGAC 59.836 37.037 0.00 0.00 0.00 2.59
48 49 6.964370 GCATTAAAATACAACACGCATAGACA 59.036 34.615 0.00 0.00 0.00 3.41
49 50 7.483375 GCATTAAAATACAACACGCATAGACAA 59.517 33.333 0.00 0.00 0.00 3.18
50 51 9.335891 CATTAAAATACAACACGCATAGACAAA 57.664 29.630 0.00 0.00 0.00 2.83
51 52 8.942669 TTAAAATACAACACGCATAGACAAAG 57.057 30.769 0.00 0.00 0.00 2.77
52 53 6.795098 AAATACAACACGCATAGACAAAGA 57.205 33.333 0.00 0.00 0.00 2.52
53 54 6.795098 AATACAACACGCATAGACAAAGAA 57.205 33.333 0.00 0.00 0.00 2.52
54 55 6.795098 ATACAACACGCATAGACAAAGAAA 57.205 33.333 0.00 0.00 0.00 2.52
55 56 5.493133 ACAACACGCATAGACAAAGAAAA 57.507 34.783 0.00 0.00 0.00 2.29
56 57 5.510671 ACAACACGCATAGACAAAGAAAAG 58.489 37.500 0.00 0.00 0.00 2.27
57 58 4.749245 ACACGCATAGACAAAGAAAAGG 57.251 40.909 0.00 0.00 0.00 3.11
58 59 3.058224 ACACGCATAGACAAAGAAAAGGC 60.058 43.478 0.00 0.00 0.00 4.35
59 60 2.488153 ACGCATAGACAAAGAAAAGGCC 59.512 45.455 0.00 0.00 0.00 5.19
60 61 2.159379 CGCATAGACAAAGAAAAGGCCC 60.159 50.000 0.00 0.00 0.00 5.80
61 62 2.825532 GCATAGACAAAGAAAAGGCCCA 59.174 45.455 0.00 0.00 0.00 5.36
62 63 3.119352 GCATAGACAAAGAAAAGGCCCAG 60.119 47.826 0.00 0.00 0.00 4.45
63 64 1.332195 AGACAAAGAAAAGGCCCAGC 58.668 50.000 0.00 0.00 0.00 4.85
74 75 3.149648 GCCCAGCCAAATCGCCAT 61.150 61.111 0.00 0.00 0.00 4.40
75 76 2.809706 CCCAGCCAAATCGCCATG 59.190 61.111 0.00 0.00 0.00 3.66
76 77 2.105528 CCAGCCAAATCGCCATGC 59.894 61.111 0.00 0.00 0.00 4.06
77 78 2.420568 CCAGCCAAATCGCCATGCT 61.421 57.895 0.00 0.00 0.00 3.79
78 79 1.102809 CCAGCCAAATCGCCATGCTA 61.103 55.000 0.00 0.00 0.00 3.49
79 80 0.029834 CAGCCAAATCGCCATGCTAC 59.970 55.000 0.00 0.00 0.00 3.58
80 81 0.107017 AGCCAAATCGCCATGCTACT 60.107 50.000 0.00 0.00 0.00 2.57
81 82 0.308993 GCCAAATCGCCATGCTACTC 59.691 55.000 0.00 0.00 0.00 2.59
82 83 0.583438 CCAAATCGCCATGCTACTCG 59.417 55.000 0.00 0.00 0.00 4.18
83 84 0.041839 CAAATCGCCATGCTACTCGC 60.042 55.000 0.00 0.00 39.77 5.03
84 85 0.179073 AAATCGCCATGCTACTCGCT 60.179 50.000 0.00 0.00 40.11 4.93
85 86 0.179073 AATCGCCATGCTACTCGCTT 60.179 50.000 0.00 0.00 40.11 4.68
86 87 0.673985 ATCGCCATGCTACTCGCTTA 59.326 50.000 0.00 0.00 40.11 3.09
87 88 0.248907 TCGCCATGCTACTCGCTTAC 60.249 55.000 0.00 0.00 40.11 2.34
88 89 1.215655 CGCCATGCTACTCGCTTACC 61.216 60.000 0.00 0.00 40.11 2.85
89 90 0.880718 GCCATGCTACTCGCTTACCC 60.881 60.000 0.00 0.00 40.11 3.69
90 91 0.753262 CCATGCTACTCGCTTACCCT 59.247 55.000 0.00 0.00 40.11 4.34
91 92 1.539065 CCATGCTACTCGCTTACCCTG 60.539 57.143 0.00 0.00 40.11 4.45
92 93 1.137086 CATGCTACTCGCTTACCCTGT 59.863 52.381 0.00 0.00 40.11 4.00
93 94 2.133281 TGCTACTCGCTTACCCTGTA 57.867 50.000 0.00 0.00 40.11 2.74
94 95 2.449464 TGCTACTCGCTTACCCTGTAA 58.551 47.619 0.00 0.00 40.11 2.41
95 96 2.827322 TGCTACTCGCTTACCCTGTAAA 59.173 45.455 0.00 0.00 40.11 2.01
96 97 3.258872 TGCTACTCGCTTACCCTGTAAAA 59.741 43.478 0.00 0.00 40.11 1.52
97 98 3.615937 GCTACTCGCTTACCCTGTAAAAC 59.384 47.826 0.00 0.00 35.14 2.43
98 99 3.049708 ACTCGCTTACCCTGTAAAACC 57.950 47.619 0.00 0.00 0.00 3.27
99 100 2.636403 ACTCGCTTACCCTGTAAAACCT 59.364 45.455 0.00 0.00 0.00 3.50
100 101 3.834231 ACTCGCTTACCCTGTAAAACCTA 59.166 43.478 0.00 0.00 0.00 3.08
101 102 4.081807 ACTCGCTTACCCTGTAAAACCTAG 60.082 45.833 0.00 0.00 0.00 3.02
102 103 4.088634 TCGCTTACCCTGTAAAACCTAGA 58.911 43.478 0.00 0.00 0.00 2.43
103 104 4.159135 TCGCTTACCCTGTAAAACCTAGAG 59.841 45.833 0.00 0.00 0.00 2.43
104 105 4.190001 GCTTACCCTGTAAAACCTAGAGC 58.810 47.826 0.00 0.00 0.00 4.09
105 106 4.430908 CTTACCCTGTAAAACCTAGAGCG 58.569 47.826 0.00 0.00 0.00 5.03
106 107 2.532843 ACCCTGTAAAACCTAGAGCGA 58.467 47.619 0.00 0.00 0.00 4.93
107 108 2.496470 ACCCTGTAAAACCTAGAGCGAG 59.504 50.000 0.00 0.00 0.00 5.03
108 109 2.496470 CCCTGTAAAACCTAGAGCGAGT 59.504 50.000 0.00 0.00 0.00 4.18
109 110 3.698040 CCCTGTAAAACCTAGAGCGAGTA 59.302 47.826 0.00 0.00 0.00 2.59
110 111 4.439837 CCCTGTAAAACCTAGAGCGAGTAC 60.440 50.000 0.00 0.00 0.00 2.73
111 112 4.398673 CCTGTAAAACCTAGAGCGAGTACT 59.601 45.833 0.00 0.00 0.00 2.73
112 113 5.448904 CCTGTAAAACCTAGAGCGAGTACTC 60.449 48.000 13.18 13.18 36.91 2.59
113 114 5.005740 TGTAAAACCTAGAGCGAGTACTCA 58.994 41.667 22.37 1.72 39.26 3.41
114 115 4.705337 AAAACCTAGAGCGAGTACTCAG 57.295 45.455 22.37 15.32 39.26 3.35
115 116 1.670791 ACCTAGAGCGAGTACTCAGC 58.329 55.000 22.37 22.98 39.26 4.26
116 117 0.948678 CCTAGAGCGAGTACTCAGCC 59.051 60.000 25.65 19.56 39.26 4.85
117 118 0.584396 CTAGAGCGAGTACTCAGCCG 59.416 60.000 25.65 14.42 39.26 5.52
118 119 0.814410 TAGAGCGAGTACTCAGCCGG 60.814 60.000 25.65 11.68 39.26 6.13
119 120 3.127352 GAGCGAGTACTCAGCCGGG 62.127 68.421 25.65 11.09 36.65 5.73
120 121 4.874977 GCGAGTACTCAGCCGGGC 62.875 72.222 22.37 12.11 0.00 6.13
121 122 3.141488 CGAGTACTCAGCCGGGCT 61.141 66.667 22.37 17.69 40.77 5.19
122 123 1.822613 CGAGTACTCAGCCGGGCTA 60.823 63.158 23.37 2.49 36.40 3.93
123 124 1.787057 CGAGTACTCAGCCGGGCTAG 61.787 65.000 23.37 20.06 36.40 3.42
124 125 0.752376 GAGTACTCAGCCGGGCTAGT 60.752 60.000 23.37 24.10 36.40 2.57
125 126 0.752376 AGTACTCAGCCGGGCTAGTC 60.752 60.000 23.37 16.55 36.40 2.59
126 127 0.752376 GTACTCAGCCGGGCTAGTCT 60.752 60.000 23.37 7.05 36.40 3.24
127 128 0.841961 TACTCAGCCGGGCTAGTCTA 59.158 55.000 23.37 8.76 36.40 2.59
128 129 0.752376 ACTCAGCCGGGCTAGTCTAC 60.752 60.000 23.37 0.00 36.40 2.59
129 130 0.466555 CTCAGCCGGGCTAGTCTACT 60.467 60.000 23.37 0.00 36.40 2.57
130 131 0.752009 TCAGCCGGGCTAGTCTACTG 60.752 60.000 23.37 7.81 36.40 2.74
131 132 2.128507 AGCCGGGCTAGTCTACTGC 61.129 63.158 22.47 0.00 36.99 4.40
132 133 2.423898 GCCGGGCTAGTCTACTGCA 61.424 63.158 12.87 0.00 0.00 4.41
133 134 1.956629 GCCGGGCTAGTCTACTGCAA 61.957 60.000 12.87 0.00 0.00 4.08
134 135 0.179108 CCGGGCTAGTCTACTGCAAC 60.179 60.000 0.00 0.00 0.00 4.17
135 136 0.179108 CGGGCTAGTCTACTGCAACC 60.179 60.000 0.00 0.00 0.00 3.77
136 137 0.902531 GGGCTAGTCTACTGCAACCA 59.097 55.000 0.00 0.00 0.00 3.67
137 138 1.405661 GGGCTAGTCTACTGCAACCAC 60.406 57.143 0.00 0.00 0.00 4.16
138 139 1.275291 GGCTAGTCTACTGCAACCACA 59.725 52.381 0.00 0.00 0.00 4.17
139 140 2.289444 GGCTAGTCTACTGCAACCACAA 60.289 50.000 0.00 0.00 0.00 3.33
140 141 2.737252 GCTAGTCTACTGCAACCACAAC 59.263 50.000 0.00 0.00 0.00 3.32
141 142 1.865865 AGTCTACTGCAACCACAACG 58.134 50.000 0.00 0.00 0.00 4.10
142 143 0.234884 GTCTACTGCAACCACAACGC 59.765 55.000 0.00 0.00 0.00 4.84
143 144 0.179070 TCTACTGCAACCACAACGCA 60.179 50.000 0.00 0.00 0.00 5.24
144 145 0.874390 CTACTGCAACCACAACGCAT 59.126 50.000 0.00 0.00 34.63 4.73
145 146 0.590682 TACTGCAACCACAACGCATG 59.409 50.000 0.00 0.00 34.63 4.06
146 147 1.372004 CTGCAACCACAACGCATGG 60.372 57.895 0.00 0.00 43.43 3.66
147 148 2.734346 GCAACCACAACGCATGGC 60.734 61.111 0.00 0.00 41.31 4.40
148 149 3.041701 CAACCACAACGCATGGCT 58.958 55.556 0.00 0.00 41.31 4.75
149 150 1.372004 CAACCACAACGCATGGCTG 60.372 57.895 0.00 0.00 41.31 4.85
150 151 3.211564 AACCACAACGCATGGCTGC 62.212 57.895 0.00 0.00 45.31 5.25
151 152 4.424566 CCACAACGCATGGCTGCC 62.425 66.667 12.87 12.87 46.07 4.85
152 153 4.764336 CACAACGCATGGCTGCCG 62.764 66.667 14.98 4.23 46.07 5.69
170 171 4.020617 CTTGGCCCAGGCGACTCA 62.021 66.667 0.00 0.00 40.21 3.41
171 172 3.965539 CTTGGCCCAGGCGACTCAG 62.966 68.421 0.00 0.00 40.21 3.35
173 174 4.154347 GGCCCAGGCGACTCAGAG 62.154 72.222 1.86 0.00 40.21 3.35
174 175 3.071206 GCCCAGGCGACTCAGAGA 61.071 66.667 3.79 0.00 40.21 3.10
175 176 2.430610 GCCCAGGCGACTCAGAGAT 61.431 63.158 3.79 0.00 40.21 2.75
176 177 1.440893 CCCAGGCGACTCAGAGATG 59.559 63.158 3.79 0.00 40.21 2.90
177 178 1.039785 CCCAGGCGACTCAGAGATGA 61.040 60.000 3.79 0.00 40.21 2.92
178 179 0.820226 CCAGGCGACTCAGAGATGAA 59.180 55.000 3.79 0.00 40.21 2.57
179 180 1.202394 CCAGGCGACTCAGAGATGAAG 60.202 57.143 3.79 0.00 40.21 3.02
180 181 0.459489 AGGCGACTCAGAGATGAAGC 59.541 55.000 3.79 1.96 32.90 3.86
181 182 0.869454 GGCGACTCAGAGATGAAGCG 60.869 60.000 3.79 0.00 0.00 4.68
182 183 1.478622 GCGACTCAGAGATGAAGCGC 61.479 60.000 3.79 0.00 34.87 5.92
183 184 0.869454 CGACTCAGAGATGAAGCGCC 60.869 60.000 2.29 0.00 0.00 6.53
184 185 0.869454 GACTCAGAGATGAAGCGCCG 60.869 60.000 2.29 0.00 0.00 6.46
185 186 2.202797 TCAGAGATGAAGCGCCGC 60.203 61.111 2.29 0.00 0.00 6.53
186 187 3.267860 CAGAGATGAAGCGCCGCC 61.268 66.667 4.98 0.00 0.00 6.13
187 188 3.774528 AGAGATGAAGCGCCGCCA 61.775 61.111 4.98 0.00 0.00 5.69
188 189 2.590007 GAGATGAAGCGCCGCCAT 60.590 61.111 4.98 2.29 0.00 4.40
189 190 2.590007 AGATGAAGCGCCGCCATC 60.590 61.111 17.14 17.14 37.53 3.51
190 191 2.590007 GATGAAGCGCCGCCATCT 60.590 61.111 17.44 3.48 35.18 2.90
191 192 2.890109 GATGAAGCGCCGCCATCTG 61.890 63.158 17.44 0.00 35.18 2.90
198 199 3.512516 GCCGCCATCTGCAGGAAC 61.513 66.667 15.13 0.22 41.33 3.62
199 200 2.270205 CCGCCATCTGCAGGAACT 59.730 61.111 15.13 0.00 41.33 3.01
200 201 1.377725 CCGCCATCTGCAGGAACTT 60.378 57.895 15.13 0.00 41.33 2.66
201 202 1.651240 CCGCCATCTGCAGGAACTTG 61.651 60.000 15.13 4.40 41.33 3.16
202 203 1.651240 CGCCATCTGCAGGAACTTGG 61.651 60.000 15.13 13.76 41.33 3.61
203 204 1.941999 GCCATCTGCAGGAACTTGGC 61.942 60.000 21.11 21.11 39.48 4.52
204 205 0.609957 CCATCTGCAGGAACTTGGCA 60.610 55.000 15.13 0.00 34.60 4.92
206 207 2.960170 CTGCAGGAACTTGGCAGC 59.040 61.111 5.57 0.00 45.88 5.25
207 208 2.598394 TGCAGGAACTTGGCAGCC 60.598 61.111 3.66 3.66 34.60 4.85
208 209 2.282745 GCAGGAACTTGGCAGCCT 60.283 61.111 14.15 0.00 34.60 4.58
209 210 1.905354 GCAGGAACTTGGCAGCCTT 60.905 57.895 14.15 0.00 34.60 4.35
210 211 1.466851 GCAGGAACTTGGCAGCCTTT 61.467 55.000 14.15 2.88 34.60 3.11
211 212 0.600057 CAGGAACTTGGCAGCCTTTC 59.400 55.000 14.15 12.16 34.60 2.62
212 213 0.185901 AGGAACTTGGCAGCCTTTCA 59.814 50.000 14.15 0.00 27.25 2.69
213 214 1.039856 GGAACTTGGCAGCCTTTCAA 58.960 50.000 14.15 0.00 0.00 2.69
214 215 1.000171 GGAACTTGGCAGCCTTTCAAG 60.000 52.381 14.15 10.33 42.37 3.02
215 216 1.956477 GAACTTGGCAGCCTTTCAAGA 59.044 47.619 14.15 0.00 39.97 3.02
216 217 2.071778 ACTTGGCAGCCTTTCAAGAA 57.928 45.000 14.15 0.00 39.97 2.52
217 218 2.387757 ACTTGGCAGCCTTTCAAGAAA 58.612 42.857 14.15 0.00 39.97 2.52
218 219 2.765699 ACTTGGCAGCCTTTCAAGAAAA 59.234 40.909 14.15 0.00 39.97 2.29
219 220 3.181472 ACTTGGCAGCCTTTCAAGAAAAG 60.181 43.478 14.15 6.90 43.44 2.27
220 221 2.665165 TGGCAGCCTTTCAAGAAAAGA 58.335 42.857 14.15 0.00 46.18 2.52
221 222 3.030291 TGGCAGCCTTTCAAGAAAAGAA 58.970 40.909 14.15 0.00 46.18 2.52
222 223 3.181476 TGGCAGCCTTTCAAGAAAAGAAC 60.181 43.478 14.15 0.00 46.18 3.01
223 224 3.384668 GCAGCCTTTCAAGAAAAGAACC 58.615 45.455 0.00 0.00 46.18 3.62
224 225 3.800261 GCAGCCTTTCAAGAAAAGAACCC 60.800 47.826 0.00 0.00 46.18 4.11
225 226 3.638627 CAGCCTTTCAAGAAAAGAACCCT 59.361 43.478 0.00 0.00 46.18 4.34
226 227 4.827284 CAGCCTTTCAAGAAAAGAACCCTA 59.173 41.667 0.00 0.00 46.18 3.53
227 228 5.478332 CAGCCTTTCAAGAAAAGAACCCTAT 59.522 40.000 0.00 0.00 46.18 2.57
228 229 6.659242 CAGCCTTTCAAGAAAAGAACCCTATA 59.341 38.462 0.00 0.00 46.18 1.31
229 230 6.659668 AGCCTTTCAAGAAAAGAACCCTATAC 59.340 38.462 0.00 0.00 46.18 1.47
230 231 6.127703 GCCTTTCAAGAAAAGAACCCTATACC 60.128 42.308 0.00 0.00 46.18 2.73
231 232 6.946009 CCTTTCAAGAAAAGAACCCTATACCA 59.054 38.462 0.00 0.00 46.18 3.25
232 233 7.450323 CCTTTCAAGAAAAGAACCCTATACCAA 59.550 37.037 0.00 0.00 46.18 3.67
233 234 8.770010 TTTCAAGAAAAGAACCCTATACCAAA 57.230 30.769 0.00 0.00 0.00 3.28
234 235 7.754851 TCAAGAAAAGAACCCTATACCAAAC 57.245 36.000 0.00 0.00 0.00 2.93
235 236 7.523415 TCAAGAAAAGAACCCTATACCAAACT 58.477 34.615 0.00 0.00 0.00 2.66
236 237 8.662255 TCAAGAAAAGAACCCTATACCAAACTA 58.338 33.333 0.00 0.00 0.00 2.24
237 238 8.727910 CAAGAAAAGAACCCTATACCAAACTAC 58.272 37.037 0.00 0.00 0.00 2.73
238 239 7.981142 AGAAAAGAACCCTATACCAAACTACA 58.019 34.615 0.00 0.00 0.00 2.74
239 240 8.442374 AGAAAAGAACCCTATACCAAACTACAA 58.558 33.333 0.00 0.00 0.00 2.41
240 241 8.631480 AAAAGAACCCTATACCAAACTACAAG 57.369 34.615 0.00 0.00 0.00 3.16
241 242 5.742063 AGAACCCTATACCAAACTACAAGC 58.258 41.667 0.00 0.00 0.00 4.01
242 243 4.498894 ACCCTATACCAAACTACAAGCC 57.501 45.455 0.00 0.00 0.00 4.35
243 244 3.118519 ACCCTATACCAAACTACAAGCCG 60.119 47.826 0.00 0.00 0.00 5.52
244 245 3.463944 CCTATACCAAACTACAAGCCGG 58.536 50.000 0.00 0.00 0.00 6.13
245 246 3.133362 CCTATACCAAACTACAAGCCGGA 59.867 47.826 5.05 0.00 0.00 5.14
246 247 2.754946 TACCAAACTACAAGCCGGAG 57.245 50.000 5.05 0.00 0.00 4.63
247 248 0.605589 ACCAAACTACAAGCCGGAGC 60.606 55.000 5.05 0.00 40.32 4.70
248 249 1.305930 CCAAACTACAAGCCGGAGCC 61.306 60.000 5.05 0.00 41.25 4.70
249 250 1.375523 AAACTACAAGCCGGAGCCG 60.376 57.895 5.05 1.06 41.25 5.52
250 251 1.823169 AAACTACAAGCCGGAGCCGA 61.823 55.000 5.05 0.00 42.83 5.54
251 252 2.105128 CTACAAGCCGGAGCCGAG 59.895 66.667 5.05 1.79 42.83 4.63
252 253 3.432051 CTACAAGCCGGAGCCGAGG 62.432 68.421 5.05 0.00 42.83 4.63
273 274 2.364317 CCGGCAGAAGGGAGAGGA 60.364 66.667 0.00 0.00 0.00 3.71
274 275 1.764054 CCGGCAGAAGGGAGAGGAT 60.764 63.158 0.00 0.00 0.00 3.24
275 276 1.341156 CCGGCAGAAGGGAGAGGATT 61.341 60.000 0.00 0.00 0.00 3.01
276 277 0.105778 CGGCAGAAGGGAGAGGATTC 59.894 60.000 0.00 0.00 0.00 2.52
277 278 1.207791 GGCAGAAGGGAGAGGATTCA 58.792 55.000 0.00 0.00 0.00 2.57
278 279 1.134250 GGCAGAAGGGAGAGGATTCAC 60.134 57.143 0.00 0.00 0.00 3.18
279 280 1.556911 GCAGAAGGGAGAGGATTCACA 59.443 52.381 0.00 0.00 0.00 3.58
280 281 2.172293 GCAGAAGGGAGAGGATTCACAT 59.828 50.000 0.00 0.00 0.00 3.21
281 282 3.371380 GCAGAAGGGAGAGGATTCACATT 60.371 47.826 0.00 0.00 0.00 2.71
282 283 4.141620 GCAGAAGGGAGAGGATTCACATTA 60.142 45.833 0.00 0.00 0.00 1.90
283 284 5.455899 GCAGAAGGGAGAGGATTCACATTAT 60.456 44.000 0.00 0.00 0.00 1.28
284 285 6.599445 CAGAAGGGAGAGGATTCACATTATT 58.401 40.000 0.00 0.00 0.00 1.40
285 286 7.690301 GCAGAAGGGAGAGGATTCACATTATTA 60.690 40.741 0.00 0.00 0.00 0.98
286 287 7.877097 CAGAAGGGAGAGGATTCACATTATTAG 59.123 40.741 0.00 0.00 0.00 1.73
287 288 7.791766 AGAAGGGAGAGGATTCACATTATTAGA 59.208 37.037 0.00 0.00 0.00 2.10
288 289 7.937700 AGGGAGAGGATTCACATTATTAGAA 57.062 36.000 0.00 0.00 0.00 2.10
289 290 8.517323 AGGGAGAGGATTCACATTATTAGAAT 57.483 34.615 0.00 0.00 34.88 2.40
290 291 9.621239 AGGGAGAGGATTCACATTATTAGAATA 57.379 33.333 0.00 0.00 32.51 1.75
318 319 8.540507 TTTTTATATATAGTTTTGCCAGGCCA 57.459 30.769 9.64 0.00 0.00 5.36
319 320 8.719645 TTTTATATATAGTTTTGCCAGGCCAT 57.280 30.769 9.64 0.00 0.00 4.40
320 321 7.701539 TTATATATAGTTTTGCCAGGCCATG 57.298 36.000 9.64 0.00 0.00 3.66
321 322 0.826062 ATAGTTTTGCCAGGCCATGC 59.174 50.000 9.64 7.69 0.00 4.06
322 323 0.251742 TAGTTTTGCCAGGCCATGCT 60.252 50.000 9.64 4.96 0.00 3.79
323 324 1.079612 GTTTTGCCAGGCCATGCTC 60.080 57.895 9.64 2.91 0.00 4.26
324 325 2.285024 TTTTGCCAGGCCATGCTCC 61.285 57.895 9.64 0.00 0.00 4.70
325 326 2.735151 TTTTGCCAGGCCATGCTCCT 62.735 55.000 9.64 0.00 0.00 3.69
326 327 2.735151 TTTGCCAGGCCATGCTCCTT 62.735 55.000 9.64 0.00 0.00 3.36
327 328 2.363406 GCCAGGCCATGCTCCTTT 60.363 61.111 5.01 0.00 0.00 3.11
328 329 1.986210 GCCAGGCCATGCTCCTTTT 60.986 57.895 5.01 0.00 0.00 2.27
329 330 1.953231 GCCAGGCCATGCTCCTTTTC 61.953 60.000 5.01 0.00 0.00 2.29
330 331 0.324091 CCAGGCCATGCTCCTTTTCT 60.324 55.000 5.01 0.00 0.00 2.52
331 332 1.101331 CAGGCCATGCTCCTTTTCTC 58.899 55.000 5.01 0.00 0.00 2.87
332 333 0.998145 AGGCCATGCTCCTTTTCTCT 59.002 50.000 5.01 0.00 0.00 3.10
333 334 1.101331 GGCCATGCTCCTTTTCTCTG 58.899 55.000 0.00 0.00 0.00 3.35
334 335 1.101331 GCCATGCTCCTTTTCTCTGG 58.899 55.000 0.00 0.00 0.00 3.86
335 336 1.340405 GCCATGCTCCTTTTCTCTGGA 60.340 52.381 0.00 0.00 0.00 3.86
355 356 5.144692 GGAGATCTTCCATCATCGAATGA 57.855 43.478 0.00 0.00 46.01 2.57
357 358 6.890663 GAGATCTTCCATCATCGAATGATC 57.109 41.667 0.00 4.52 46.62 2.92
358 359 6.608539 AGATCTTCCATCATCGAATGATCT 57.391 37.500 7.20 6.33 46.62 2.75
359 360 6.399743 AGATCTTCCATCATCGAATGATCTG 58.600 40.000 9.08 4.79 46.62 2.90
360 361 5.796424 TCTTCCATCATCGAATGATCTGA 57.204 39.130 7.20 0.00 46.62 3.27
361 362 6.356186 TCTTCCATCATCGAATGATCTGAT 57.644 37.500 7.20 0.00 46.62 2.90
362 363 6.766429 TCTTCCATCATCGAATGATCTGATT 58.234 36.000 7.20 0.00 46.62 2.57
363 364 7.899973 TCTTCCATCATCGAATGATCTGATTA 58.100 34.615 7.20 0.00 46.62 1.75
364 365 8.370182 TCTTCCATCATCGAATGATCTGATTAA 58.630 33.333 7.20 0.42 46.62 1.40
365 366 9.163899 CTTCCATCATCGAATGATCTGATTAAT 57.836 33.333 7.20 0.00 46.62 1.40
367 368 9.813446 TCCATCATCGAATGATCTGATTAATAG 57.187 33.333 7.20 0.00 46.62 1.73
368 369 9.597170 CCATCATCGAATGATCTGATTAATAGT 57.403 33.333 7.20 0.00 46.62 2.12
391 392 8.135382 AGTACATAATGTGTTCCTACTCTTGT 57.865 34.615 0.00 0.00 42.29 3.16
392 393 9.251440 AGTACATAATGTGTTCCTACTCTTGTA 57.749 33.333 0.00 0.00 42.29 2.41
393 394 9.517609 GTACATAATGTGTTCCTACTCTTGTAG 57.482 37.037 0.00 0.00 42.28 2.74
394 395 8.135382 ACATAATGTGTTCCTACTCTTGTAGT 57.865 34.615 0.00 0.00 40.26 2.73
395 396 9.251440 ACATAATGTGTTCCTACTCTTGTAGTA 57.749 33.333 0.00 0.00 40.26 1.82
400 401 7.769220 TGTGTTCCTACTCTTGTAGTATTAGC 58.231 38.462 0.00 0.00 43.38 3.09
401 402 6.911511 GTGTTCCTACTCTTGTAGTATTAGCG 59.088 42.308 0.00 0.00 43.38 4.26
402 403 6.600822 TGTTCCTACTCTTGTAGTATTAGCGT 59.399 38.462 0.00 0.00 43.38 5.07
403 404 7.770433 TGTTCCTACTCTTGTAGTATTAGCGTA 59.230 37.037 0.00 0.00 43.38 4.42
404 405 7.721286 TCCTACTCTTGTAGTATTAGCGTAC 57.279 40.000 0.00 0.00 43.38 3.67
405 406 7.504403 TCCTACTCTTGTAGTATTAGCGTACT 58.496 38.462 5.14 5.14 43.38 2.73
406 407 7.440556 TCCTACTCTTGTAGTATTAGCGTACTG 59.559 40.741 8.97 0.00 43.38 2.74
407 408 5.819059 ACTCTTGTAGTATTAGCGTACTGC 58.181 41.667 8.97 8.29 39.70 4.40
408 409 5.221009 ACTCTTGTAGTATTAGCGTACTGCC 60.221 44.000 8.97 2.45 40.10 4.85
409 410 8.372023 ACTCTTGTAGTATTAGCGTACTGCCG 62.372 46.154 8.97 3.80 40.10 5.69
416 417 2.787249 GCGTACTGCCGTCGACTA 59.213 61.111 14.70 0.00 37.76 2.59
417 418 1.354506 GCGTACTGCCGTCGACTAT 59.645 57.895 14.70 0.00 37.76 2.12
418 419 0.928908 GCGTACTGCCGTCGACTATG 60.929 60.000 14.70 5.38 37.76 2.23
419 420 0.316772 CGTACTGCCGTCGACTATGG 60.317 60.000 14.70 8.82 37.31 2.74
420 421 1.019673 GTACTGCCGTCGACTATGGA 58.980 55.000 14.70 2.39 36.17 3.41
421 422 1.402968 GTACTGCCGTCGACTATGGAA 59.597 52.381 14.70 0.84 36.17 3.53
422 423 1.112113 ACTGCCGTCGACTATGGAAT 58.888 50.000 14.70 0.00 36.17 3.01
423 424 1.202417 ACTGCCGTCGACTATGGAATG 60.202 52.381 14.70 4.29 36.17 2.67
427 428 2.284417 GCCGTCGACTATGGAATGAAAC 59.716 50.000 14.70 0.00 36.17 2.78
432 433 4.030913 TCGACTATGGAATGAAACTCCCT 58.969 43.478 0.00 0.00 0.00 4.20
508 515 8.514136 TTTTTACAATCATTTCGTTGGACATC 57.486 30.769 0.00 0.00 0.00 3.06
510 517 4.078537 ACAATCATTTCGTTGGACATCCA 58.921 39.130 0.00 0.00 45.94 3.41
527 534 1.058748 CATTGTGTAGGCGCGTTCG 59.941 57.895 8.36 0.00 39.07 3.95
530 537 0.318529 TTGTGTAGGCGCGTTCGTAA 60.319 50.000 8.36 0.00 38.14 3.18
535 542 1.655099 GTAGGCGCGTTCGTAAATTCA 59.345 47.619 8.36 0.00 38.14 2.57
536 543 0.441145 AGGCGCGTTCGTAAATTCAC 59.559 50.000 8.43 0.00 38.14 3.18
547 554 6.314784 GTTCGTAAATTCACCTCCTCAATTG 58.685 40.000 0.00 0.00 0.00 2.32
589 596 7.453980 CATGCGTGCTGATAATTTATTTTGT 57.546 32.000 0.00 0.00 0.00 2.83
678 686 1.924524 CAATCGACCACGTACACCATC 59.075 52.381 0.00 0.00 40.69 3.51
679 687 0.099968 ATCGACCACGTACACCATCG 59.900 55.000 0.00 0.00 40.69 3.84
680 688 2.156446 CGACCACGTACACCATCGC 61.156 63.158 0.00 0.00 34.56 4.58
688 696 3.405592 TACACCATCGCGCGGTCTC 62.406 63.158 31.69 0.00 33.25 3.36
702 710 1.673033 CGGTCTCGAATTCTGCCAGTT 60.673 52.381 3.52 0.00 39.00 3.16
704 712 2.930682 GGTCTCGAATTCTGCCAGTTAC 59.069 50.000 3.52 0.00 0.00 2.50
706 714 2.565391 TCTCGAATTCTGCCAGTTACCA 59.435 45.455 3.52 0.00 0.00 3.25
707 715 2.673368 CTCGAATTCTGCCAGTTACCAC 59.327 50.000 3.52 0.00 0.00 4.16
708 716 1.393539 CGAATTCTGCCAGTTACCACG 59.606 52.381 3.52 0.00 0.00 4.94
709 717 2.423577 GAATTCTGCCAGTTACCACGT 58.576 47.619 0.00 0.00 0.00 4.49
710 718 3.592059 GAATTCTGCCAGTTACCACGTA 58.408 45.455 0.00 0.00 0.00 3.57
718 726 4.587262 TGCCAGTTACCACGTATAGATGAT 59.413 41.667 0.00 0.00 0.00 2.45
720 728 5.509163 GCCAGTTACCACGTATAGATGATGT 60.509 44.000 0.00 0.00 0.00 3.06
730 738 7.331026 CACGTATAGATGATGTGGGGAAATAT 58.669 38.462 0.00 0.00 31.40 1.28
735 743 6.271585 AGATGATGTGGGGAAATATGAACT 57.728 37.500 0.00 0.00 0.00 3.01
793 801 8.768957 ATCACACGGATCAGATTGATATAAAG 57.231 34.615 0.00 0.00 37.20 1.85
819 829 8.709386 AAATCAAGGCTAGAATATACTATGCG 57.291 34.615 0.00 0.00 0.00 4.73
836 849 4.775058 ATGCGGTAACTGTGCATTAAAA 57.225 36.364 0.00 0.00 46.55 1.52
865 878 0.315568 GCAGGCGATCCTCGTATCTT 59.684 55.000 0.00 0.00 41.93 2.40
869 882 1.546476 GGCGATCCTCGTATCTTCCAT 59.454 52.381 0.00 0.00 42.81 3.41
873 886 4.800993 GCGATCCTCGTATCTTCCATAATG 59.199 45.833 0.00 0.00 42.81 1.90
903 917 7.990314 TCTTTCCAATTATGACGTGGATGATTA 59.010 33.333 0.00 0.00 41.05 1.75
907 921 7.544217 TCCAATTATGACGTGGATGATTATACG 59.456 37.037 0.00 0.00 36.51 3.06
932 946 5.614324 TGTCATTCGATTTGATACTCCCT 57.386 39.130 2.34 0.00 0.00 4.20
949 966 2.969950 TCCCTTATAAGACCACCATCCG 59.030 50.000 14.28 0.00 0.00 4.18
1098 1152 0.253327 GGATGAAGAAGAAGGCCCGT 59.747 55.000 0.00 0.00 0.00 5.28
1116 1170 0.180406 GTGAGTTGTCCACCCTGTGT 59.820 55.000 0.00 0.00 0.00 3.72
1173 1227 4.803426 GAGTCCTCGCAGGTGCCG 62.803 72.222 0.00 0.00 36.53 5.69
1218 1272 1.942712 GATGCGCGTTATCGACCGT 60.943 57.895 8.43 0.00 39.71 4.83
1290 1344 1.069765 CTACATCCGGGAGCGCATT 59.930 57.895 11.47 0.00 0.00 3.56
1324 1378 3.050275 AGCTTTCCAAGGCGCGAC 61.050 61.111 12.10 7.34 0.00 5.19
1326 1380 3.788766 CTTTCCAAGGCGCGACGG 61.789 66.667 12.10 4.40 0.00 4.79
1449 1503 4.372656 GCTGGATGGCGGATAACTATATC 58.627 47.826 0.00 0.00 37.74 1.63
1489 1543 2.244695 TCGCCTCAAACAAGAGTAGGA 58.755 47.619 0.00 0.00 33.75 2.94
1517 1571 3.008517 TCCCCTGCCTTGCGATGA 61.009 61.111 0.00 0.00 0.00 2.92
1518 1572 2.194056 CCCCTGCCTTGCGATGAT 59.806 61.111 0.00 0.00 0.00 2.45
1519 1573 2.191513 CCCCTGCCTTGCGATGATG 61.192 63.158 0.00 0.00 0.00 3.07
1524 1578 2.409055 GCCTTGCGATGATGCCACA 61.409 57.895 0.00 0.00 0.00 4.17
1572 1626 1.603455 GCTGCAAGGTTGGGCTACA 60.603 57.895 0.00 0.00 0.00 2.74
1701 1755 0.673644 CAGGTCCGCATTTTCCTCGT 60.674 55.000 0.00 0.00 0.00 4.18
1723 1777 2.094762 ATAAGGAGACCGTGTGCAAC 57.905 50.000 0.00 0.00 37.35 4.17
2165 2595 4.202357 ACTGGCTGCGGATTCTATAAATCA 60.202 41.667 0.00 0.00 0.00 2.57
2234 2664 5.048991 TCCTCCGCTACAAAATTTTGAAGTC 60.049 40.000 32.20 17.93 40.55 3.01
2288 2722 9.984190 TTGGGTGGTAAATCAAAACTTTTATAC 57.016 29.630 0.00 0.00 0.00 1.47
2290 2724 9.850628 GGGTGGTAAATCAAAACTTTTATACTC 57.149 33.333 0.00 0.00 0.00 2.59
2346 2780 8.283291 GCTGCAACACTAGATATAAATAACACC 58.717 37.037 0.00 0.00 0.00 4.16
2426 2861 5.598416 TGATCGATCAGTATCAACCTTGT 57.402 39.130 23.99 0.00 32.11 3.16
2481 2916 0.317160 CGTGTGCTACCTTGGTCTCA 59.683 55.000 0.00 0.00 0.00 3.27
2489 2924 4.041567 TGCTACCTTGGTCTCAAATTCTGA 59.958 41.667 0.00 0.00 31.77 3.27
2561 2996 2.661537 GCCAAAGCCCAAACGTGC 60.662 61.111 0.00 0.00 0.00 5.34
2658 3093 8.491152 CACGATATAAAGAATTGAAGGCTACAG 58.509 37.037 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.681593 TGCGGAACAAGTAAGGCTATTT 58.318 40.909 0.00 0.00 0.00 1.40
2 3 3.270877 CTGCGGAACAAGTAAGGCTATT 58.729 45.455 0.00 0.00 0.00 1.73
5 6 0.955919 GCTGCGGAACAAGTAAGGCT 60.956 55.000 0.00 0.00 0.00 4.58
6 7 1.234615 TGCTGCGGAACAAGTAAGGC 61.235 55.000 0.00 0.00 0.00 4.35
7 8 1.453155 ATGCTGCGGAACAAGTAAGG 58.547 50.000 0.00 0.00 0.00 2.69
8 9 4.678509 TTAATGCTGCGGAACAAGTAAG 57.321 40.909 0.00 0.00 0.00 2.34
9 10 5.440234 TTTTAATGCTGCGGAACAAGTAA 57.560 34.783 0.00 0.00 0.00 2.24
12 13 5.398169 TGTATTTTAATGCTGCGGAACAAG 58.602 37.500 0.00 0.00 0.00 3.16
13 14 5.378292 TGTATTTTAATGCTGCGGAACAA 57.622 34.783 0.00 0.00 0.00 2.83
14 15 5.157781 GTTGTATTTTAATGCTGCGGAACA 58.842 37.500 0.00 0.00 0.00 3.18
15 16 5.060446 GTGTTGTATTTTAATGCTGCGGAAC 59.940 40.000 0.00 0.00 0.00 3.62
16 17 5.157781 GTGTTGTATTTTAATGCTGCGGAA 58.842 37.500 0.00 0.00 0.00 4.30
17 18 4.670478 CGTGTTGTATTTTAATGCTGCGGA 60.670 41.667 0.00 0.00 0.00 5.54
18 19 3.541916 CGTGTTGTATTTTAATGCTGCGG 59.458 43.478 0.00 0.00 0.00 5.69
19 20 3.002149 GCGTGTTGTATTTTAATGCTGCG 60.002 43.478 0.00 0.00 0.00 5.18
20 21 3.917380 TGCGTGTTGTATTTTAATGCTGC 59.083 39.130 0.00 0.00 0.00 5.25
21 22 7.164171 GTCTATGCGTGTTGTATTTTAATGCTG 59.836 37.037 0.00 0.00 0.00 4.41
22 23 7.148323 TGTCTATGCGTGTTGTATTTTAATGCT 60.148 33.333 0.00 0.00 0.00 3.79
23 24 6.964370 TGTCTATGCGTGTTGTATTTTAATGC 59.036 34.615 0.00 0.00 0.00 3.56
24 25 8.888332 TTGTCTATGCGTGTTGTATTTTAATG 57.112 30.769 0.00 0.00 0.00 1.90
25 26 9.554724 CTTTGTCTATGCGTGTTGTATTTTAAT 57.445 29.630 0.00 0.00 0.00 1.40
26 27 8.775527 TCTTTGTCTATGCGTGTTGTATTTTAA 58.224 29.630 0.00 0.00 0.00 1.52
27 28 8.312896 TCTTTGTCTATGCGTGTTGTATTTTA 57.687 30.769 0.00 0.00 0.00 1.52
28 29 7.197071 TCTTTGTCTATGCGTGTTGTATTTT 57.803 32.000 0.00 0.00 0.00 1.82
29 30 6.795098 TCTTTGTCTATGCGTGTTGTATTT 57.205 33.333 0.00 0.00 0.00 1.40
30 31 6.795098 TTCTTTGTCTATGCGTGTTGTATT 57.205 33.333 0.00 0.00 0.00 1.89
31 32 6.795098 TTTCTTTGTCTATGCGTGTTGTAT 57.205 33.333 0.00 0.00 0.00 2.29
32 33 6.293190 CCTTTTCTTTGTCTATGCGTGTTGTA 60.293 38.462 0.00 0.00 0.00 2.41
33 34 5.493133 TTTTCTTTGTCTATGCGTGTTGT 57.507 34.783 0.00 0.00 0.00 3.32
34 35 4.911610 CCTTTTCTTTGTCTATGCGTGTTG 59.088 41.667 0.00 0.00 0.00 3.33
35 36 4.556699 GCCTTTTCTTTGTCTATGCGTGTT 60.557 41.667 0.00 0.00 0.00 3.32
36 37 3.058224 GCCTTTTCTTTGTCTATGCGTGT 60.058 43.478 0.00 0.00 0.00 4.49
37 38 3.492313 GCCTTTTCTTTGTCTATGCGTG 58.508 45.455 0.00 0.00 0.00 5.34
38 39 2.488153 GGCCTTTTCTTTGTCTATGCGT 59.512 45.455 0.00 0.00 0.00 5.24
39 40 2.159379 GGGCCTTTTCTTTGTCTATGCG 60.159 50.000 0.84 0.00 0.00 4.73
40 41 2.825532 TGGGCCTTTTCTTTGTCTATGC 59.174 45.455 4.53 0.00 0.00 3.14
41 42 3.119352 GCTGGGCCTTTTCTTTGTCTATG 60.119 47.826 4.53 0.00 0.00 2.23
42 43 3.092301 GCTGGGCCTTTTCTTTGTCTAT 58.908 45.455 4.53 0.00 0.00 1.98
43 44 2.514803 GCTGGGCCTTTTCTTTGTCTA 58.485 47.619 4.53 0.00 0.00 2.59
44 45 1.332195 GCTGGGCCTTTTCTTTGTCT 58.668 50.000 4.53 0.00 0.00 3.41
45 46 0.318441 GGCTGGGCCTTTTCTTTGTC 59.682 55.000 4.53 0.00 46.69 3.18
46 47 2.440946 GGCTGGGCCTTTTCTTTGT 58.559 52.632 4.53 0.00 46.69 2.83
57 58 3.149648 ATGGCGATTTGGCTGGGC 61.150 61.111 0.00 0.00 45.14 5.36
58 59 2.809706 CATGGCGATTTGGCTGGG 59.190 61.111 0.00 0.00 45.14 4.45
59 60 1.102809 TAGCATGGCGATTTGGCTGG 61.103 55.000 2.80 0.00 45.14 4.85
60 61 0.029834 GTAGCATGGCGATTTGGCTG 59.970 55.000 2.80 0.00 45.14 4.85
61 62 0.107017 AGTAGCATGGCGATTTGGCT 60.107 50.000 0.00 0.00 45.14 4.75
62 63 0.308993 GAGTAGCATGGCGATTTGGC 59.691 55.000 0.00 0.00 45.12 4.52
63 64 0.583438 CGAGTAGCATGGCGATTTGG 59.417 55.000 0.00 0.00 0.00 3.28
76 77 4.081807 AGGTTTTACAGGGTAAGCGAGTAG 60.082 45.833 0.00 0.00 0.00 2.57
77 78 3.834231 AGGTTTTACAGGGTAAGCGAGTA 59.166 43.478 0.00 0.00 0.00 2.59
78 79 2.636403 AGGTTTTACAGGGTAAGCGAGT 59.364 45.455 0.00 0.00 0.00 4.18
79 80 3.329929 AGGTTTTACAGGGTAAGCGAG 57.670 47.619 0.00 0.00 0.00 5.03
80 81 4.088634 TCTAGGTTTTACAGGGTAAGCGA 58.911 43.478 0.00 0.00 0.00 4.93
81 82 4.430908 CTCTAGGTTTTACAGGGTAAGCG 58.569 47.826 0.00 0.00 0.00 4.68
82 83 4.190001 GCTCTAGGTTTTACAGGGTAAGC 58.810 47.826 0.00 0.00 0.00 3.09
83 84 4.159135 TCGCTCTAGGTTTTACAGGGTAAG 59.841 45.833 0.00 0.00 0.00 2.34
84 85 4.088634 TCGCTCTAGGTTTTACAGGGTAA 58.911 43.478 0.00 0.00 0.00 2.85
85 86 3.698040 CTCGCTCTAGGTTTTACAGGGTA 59.302 47.826 0.00 0.00 0.00 3.69
86 87 2.496470 CTCGCTCTAGGTTTTACAGGGT 59.504 50.000 0.00 0.00 0.00 4.34
87 88 2.496470 ACTCGCTCTAGGTTTTACAGGG 59.504 50.000 0.00 0.00 0.00 4.45
88 89 3.870633 ACTCGCTCTAGGTTTTACAGG 57.129 47.619 0.00 0.00 0.00 4.00
89 90 5.123502 TGAGTACTCGCTCTAGGTTTTACAG 59.876 44.000 17.85 0.00 36.51 2.74
90 91 5.005740 TGAGTACTCGCTCTAGGTTTTACA 58.994 41.667 17.85 0.00 36.51 2.41
91 92 5.557891 TGAGTACTCGCTCTAGGTTTTAC 57.442 43.478 17.85 0.00 36.51 2.01
92 93 4.096081 GCTGAGTACTCGCTCTAGGTTTTA 59.904 45.833 23.52 2.50 36.51 1.52
93 94 3.119424 GCTGAGTACTCGCTCTAGGTTTT 60.119 47.826 23.52 0.00 36.51 2.43
94 95 2.424246 GCTGAGTACTCGCTCTAGGTTT 59.576 50.000 23.52 0.00 36.51 3.27
95 96 2.018515 GCTGAGTACTCGCTCTAGGTT 58.981 52.381 23.52 0.00 36.51 3.50
96 97 1.670791 GCTGAGTACTCGCTCTAGGT 58.329 55.000 23.52 0.00 36.51 3.08
97 98 0.948678 GGCTGAGTACTCGCTCTAGG 59.051 60.000 27.01 11.29 36.51 3.02
98 99 0.584396 CGGCTGAGTACTCGCTCTAG 59.416 60.000 27.01 17.04 36.51 2.43
99 100 0.814410 CCGGCTGAGTACTCGCTCTA 60.814 60.000 27.01 9.01 36.51 2.43
100 101 2.115911 CCGGCTGAGTACTCGCTCT 61.116 63.158 27.01 0.00 36.51 4.09
101 102 2.409651 CCGGCTGAGTACTCGCTC 59.590 66.667 27.01 19.69 36.12 5.03
102 103 3.141488 CCCGGCTGAGTACTCGCT 61.141 66.667 27.01 0.00 32.56 4.93
103 104 4.874977 GCCCGGCTGAGTACTCGC 62.875 72.222 23.05 23.05 0.00 5.03
104 105 1.787057 CTAGCCCGGCTGAGTACTCG 61.787 65.000 22.95 13.20 40.10 4.18
105 106 0.752376 ACTAGCCCGGCTGAGTACTC 60.752 60.000 22.95 16.32 40.10 2.59
106 107 0.752376 GACTAGCCCGGCTGAGTACT 60.752 60.000 22.95 0.00 40.10 2.73
107 108 0.752376 AGACTAGCCCGGCTGAGTAC 60.752 60.000 22.95 13.45 40.10 2.73
108 109 0.841961 TAGACTAGCCCGGCTGAGTA 59.158 55.000 22.95 5.43 40.10 2.59
109 110 0.752376 GTAGACTAGCCCGGCTGAGT 60.752 60.000 22.95 19.23 40.10 3.41
110 111 0.466555 AGTAGACTAGCCCGGCTGAG 60.467 60.000 22.95 16.37 40.10 3.35
111 112 0.752009 CAGTAGACTAGCCCGGCTGA 60.752 60.000 22.95 5.37 40.10 4.26
112 113 1.736586 CAGTAGACTAGCCCGGCTG 59.263 63.158 22.95 13.95 40.10 4.85
113 114 2.128507 GCAGTAGACTAGCCCGGCT 61.129 63.158 18.05 18.05 43.41 5.52
114 115 1.956629 TTGCAGTAGACTAGCCCGGC 61.957 60.000 0.00 0.00 0.00 6.13
115 116 0.179108 GTTGCAGTAGACTAGCCCGG 60.179 60.000 0.00 0.00 0.00 5.73
116 117 0.179108 GGTTGCAGTAGACTAGCCCG 60.179 60.000 0.00 0.00 0.00 6.13
117 118 0.902531 TGGTTGCAGTAGACTAGCCC 59.097 55.000 0.00 0.00 0.00 5.19
118 119 1.275291 TGTGGTTGCAGTAGACTAGCC 59.725 52.381 0.00 0.00 0.00 3.93
119 120 2.737252 GTTGTGGTTGCAGTAGACTAGC 59.263 50.000 0.00 0.00 0.00 3.42
120 121 2.987149 CGTTGTGGTTGCAGTAGACTAG 59.013 50.000 0.00 0.00 0.00 2.57
121 122 2.864882 GCGTTGTGGTTGCAGTAGACTA 60.865 50.000 0.00 0.00 0.00 2.59
122 123 1.865865 CGTTGTGGTTGCAGTAGACT 58.134 50.000 0.00 0.00 0.00 3.24
123 124 0.234884 GCGTTGTGGTTGCAGTAGAC 59.765 55.000 0.00 0.00 0.00 2.59
124 125 0.179070 TGCGTTGTGGTTGCAGTAGA 60.179 50.000 0.00 0.00 34.03 2.59
125 126 0.874390 ATGCGTTGTGGTTGCAGTAG 59.126 50.000 0.00 0.00 42.65 2.57
126 127 0.590682 CATGCGTTGTGGTTGCAGTA 59.409 50.000 0.00 0.00 42.65 2.74
127 128 1.359833 CATGCGTTGTGGTTGCAGT 59.640 52.632 0.00 0.00 42.65 4.40
128 129 1.372004 CCATGCGTTGTGGTTGCAG 60.372 57.895 0.00 0.00 42.65 4.41
129 130 2.726909 CCATGCGTTGTGGTTGCA 59.273 55.556 0.00 0.00 43.67 4.08
130 131 2.734346 GCCATGCGTTGTGGTTGC 60.734 61.111 5.09 0.00 39.01 4.17
131 132 1.372004 CAGCCATGCGTTGTGGTTG 60.372 57.895 5.62 5.62 40.71 3.77
132 133 3.041701 CAGCCATGCGTTGTGGTT 58.958 55.556 5.09 0.00 39.01 3.67
133 134 3.673484 GCAGCCATGCGTTGTGGT 61.673 61.111 5.09 0.00 43.87 4.16
153 154 3.965539 CTGAGTCGCCTGGGCCAAG 62.966 68.421 8.04 0.91 37.98 3.61
154 155 4.020617 CTGAGTCGCCTGGGCCAA 62.021 66.667 8.04 0.00 37.98 4.52
156 157 4.154347 CTCTGAGTCGCCTGGGCC 62.154 72.222 5.99 0.00 37.98 5.80
157 158 2.430610 ATCTCTGAGTCGCCTGGGC 61.431 63.158 4.32 0.82 37.85 5.36
158 159 1.039785 TCATCTCTGAGTCGCCTGGG 61.040 60.000 4.32 0.00 0.00 4.45
159 160 0.820226 TTCATCTCTGAGTCGCCTGG 59.180 55.000 4.32 0.00 31.68 4.45
160 161 1.802136 GCTTCATCTCTGAGTCGCCTG 60.802 57.143 4.32 0.00 31.68 4.85
161 162 0.459489 GCTTCATCTCTGAGTCGCCT 59.541 55.000 4.32 0.00 31.68 5.52
162 163 0.869454 CGCTTCATCTCTGAGTCGCC 60.869 60.000 4.32 0.00 31.68 5.54
163 164 1.478622 GCGCTTCATCTCTGAGTCGC 61.479 60.000 0.00 7.72 42.38 5.19
164 165 0.869454 GGCGCTTCATCTCTGAGTCG 60.869 60.000 7.64 0.00 33.71 4.18
165 166 0.869454 CGGCGCTTCATCTCTGAGTC 60.869 60.000 7.64 0.00 31.68 3.36
166 167 1.140589 CGGCGCTTCATCTCTGAGT 59.859 57.895 7.64 0.00 31.68 3.41
167 168 2.236382 GCGGCGCTTCATCTCTGAG 61.236 63.158 26.86 0.00 31.68 3.35
168 169 2.202797 GCGGCGCTTCATCTCTGA 60.203 61.111 26.86 0.00 0.00 3.27
169 170 3.267860 GGCGGCGCTTCATCTCTG 61.268 66.667 32.30 0.00 0.00 3.35
170 171 2.985512 GATGGCGGCGCTTCATCTCT 62.986 60.000 30.73 11.50 35.64 3.10
171 172 2.590007 ATGGCGGCGCTTCATCTC 60.590 61.111 32.30 13.58 0.00 2.75
172 173 2.590007 GATGGCGGCGCTTCATCT 60.590 61.111 30.73 12.42 35.64 2.90
173 174 2.590007 AGATGGCGGCGCTTCATC 60.590 61.111 30.84 30.84 37.97 2.92
174 175 2.898840 CAGATGGCGGCGCTTCAT 60.899 61.111 32.30 26.02 0.00 2.57
184 185 1.941999 GCCAAGTTCCTGCAGATGGC 61.942 60.000 17.39 20.69 45.54 4.40
185 186 0.609957 TGCCAAGTTCCTGCAGATGG 60.610 55.000 17.39 15.36 0.00 3.51
186 187 2.951269 TGCCAAGTTCCTGCAGATG 58.049 52.632 17.39 5.91 0.00 2.90
190 191 2.598394 GGCTGCCAAGTTCCTGCA 60.598 61.111 15.17 0.00 0.00 4.41
191 192 1.466851 AAAGGCTGCCAAGTTCCTGC 61.467 55.000 22.65 0.00 0.00 4.85
192 193 0.600057 GAAAGGCTGCCAAGTTCCTG 59.400 55.000 22.65 0.00 0.00 3.86
193 194 0.185901 TGAAAGGCTGCCAAGTTCCT 59.814 50.000 22.65 0.00 0.00 3.36
194 195 1.000171 CTTGAAAGGCTGCCAAGTTCC 60.000 52.381 22.65 4.15 34.27 3.62
195 196 1.956477 TCTTGAAAGGCTGCCAAGTTC 59.044 47.619 22.65 19.67 38.61 3.01
196 197 2.071778 TCTTGAAAGGCTGCCAAGTT 57.928 45.000 22.65 11.66 38.61 2.66
197 198 2.071778 TTCTTGAAAGGCTGCCAAGT 57.928 45.000 22.65 4.82 38.61 3.16
198 199 3.068590 TCTTTTCTTGAAAGGCTGCCAAG 59.931 43.478 22.65 15.24 44.00 3.61
199 200 3.030291 TCTTTTCTTGAAAGGCTGCCAA 58.970 40.909 22.65 5.16 44.00 4.52
200 201 2.665165 TCTTTTCTTGAAAGGCTGCCA 58.335 42.857 22.65 0.00 44.00 4.92
201 202 3.384668 GTTCTTTTCTTGAAAGGCTGCC 58.615 45.455 11.65 11.65 44.00 4.85
202 203 3.384668 GGTTCTTTTCTTGAAAGGCTGC 58.615 45.455 0.00 0.00 44.00 5.25
203 204 3.638627 AGGGTTCTTTTCTTGAAAGGCTG 59.361 43.478 0.00 0.00 44.00 4.85
204 205 3.916035 AGGGTTCTTTTCTTGAAAGGCT 58.084 40.909 1.09 0.00 44.00 4.58
205 206 5.984695 ATAGGGTTCTTTTCTTGAAAGGC 57.015 39.130 1.09 0.00 44.00 4.35
206 207 6.946009 TGGTATAGGGTTCTTTTCTTGAAAGG 59.054 38.462 0.00 0.00 44.00 3.11
207 208 7.996098 TGGTATAGGGTTCTTTTCTTGAAAG 57.004 36.000 0.00 0.00 44.99 2.62
208 209 8.635328 GTTTGGTATAGGGTTCTTTTCTTGAAA 58.365 33.333 0.00 0.00 0.00 2.69
209 210 8.002459 AGTTTGGTATAGGGTTCTTTTCTTGAA 58.998 33.333 0.00 0.00 0.00 2.69
210 211 7.523415 AGTTTGGTATAGGGTTCTTTTCTTGA 58.477 34.615 0.00 0.00 0.00 3.02
211 212 7.761038 AGTTTGGTATAGGGTTCTTTTCTTG 57.239 36.000 0.00 0.00 0.00 3.02
212 213 8.442374 TGTAGTTTGGTATAGGGTTCTTTTCTT 58.558 33.333 0.00 0.00 0.00 2.52
213 214 7.981142 TGTAGTTTGGTATAGGGTTCTTTTCT 58.019 34.615 0.00 0.00 0.00 2.52
214 215 8.625786 TTGTAGTTTGGTATAGGGTTCTTTTC 57.374 34.615 0.00 0.00 0.00 2.29
215 216 7.176165 GCTTGTAGTTTGGTATAGGGTTCTTTT 59.824 37.037 0.00 0.00 0.00 2.27
216 217 6.657966 GCTTGTAGTTTGGTATAGGGTTCTTT 59.342 38.462 0.00 0.00 0.00 2.52
217 218 6.178324 GCTTGTAGTTTGGTATAGGGTTCTT 58.822 40.000 0.00 0.00 0.00 2.52
218 219 5.338953 GGCTTGTAGTTTGGTATAGGGTTCT 60.339 44.000 0.00 0.00 0.00 3.01
219 220 4.880120 GGCTTGTAGTTTGGTATAGGGTTC 59.120 45.833 0.00 0.00 0.00 3.62
220 221 4.624604 CGGCTTGTAGTTTGGTATAGGGTT 60.625 45.833 0.00 0.00 0.00 4.11
221 222 3.118519 CGGCTTGTAGTTTGGTATAGGGT 60.119 47.826 0.00 0.00 0.00 4.34
222 223 3.463944 CGGCTTGTAGTTTGGTATAGGG 58.536 50.000 0.00 0.00 0.00 3.53
223 224 3.133362 TCCGGCTTGTAGTTTGGTATAGG 59.867 47.826 0.00 0.00 0.00 2.57
224 225 4.369182 CTCCGGCTTGTAGTTTGGTATAG 58.631 47.826 0.00 0.00 0.00 1.31
225 226 3.431207 GCTCCGGCTTGTAGTTTGGTATA 60.431 47.826 0.00 0.00 35.22 1.47
226 227 2.679930 GCTCCGGCTTGTAGTTTGGTAT 60.680 50.000 0.00 0.00 35.22 2.73
227 228 1.338389 GCTCCGGCTTGTAGTTTGGTA 60.338 52.381 0.00 0.00 35.22 3.25
228 229 0.605589 GCTCCGGCTTGTAGTTTGGT 60.606 55.000 0.00 0.00 35.22 3.67
229 230 1.305930 GGCTCCGGCTTGTAGTTTGG 61.306 60.000 0.00 0.00 38.73 3.28
230 231 1.635663 CGGCTCCGGCTTGTAGTTTG 61.636 60.000 0.00 0.00 38.73 2.93
231 232 1.375523 CGGCTCCGGCTTGTAGTTT 60.376 57.895 0.00 0.00 38.73 2.66
232 233 2.227089 CTCGGCTCCGGCTTGTAGTT 62.227 60.000 8.59 0.00 40.25 2.24
233 234 2.678934 TCGGCTCCGGCTTGTAGT 60.679 61.111 8.59 0.00 40.25 2.73
234 235 2.105128 CTCGGCTCCGGCTTGTAG 59.895 66.667 8.59 0.00 40.25 2.74
235 236 3.458163 CCTCGGCTCCGGCTTGTA 61.458 66.667 8.59 0.00 40.25 2.41
249 250 4.785453 CCTTCTGCCGGGTGCCTC 62.785 72.222 2.18 0.00 40.16 4.70
252 253 4.785453 CTCCCTTCTGCCGGGTGC 62.785 72.222 2.18 0.00 42.56 5.01
253 254 3.003173 TCTCCCTTCTGCCGGGTG 61.003 66.667 2.18 0.00 42.56 4.61
254 255 2.685380 CTCTCCCTTCTGCCGGGT 60.685 66.667 2.18 0.00 42.56 5.28
255 256 3.474570 CCTCTCCCTTCTGCCGGG 61.475 72.222 2.18 0.00 43.38 5.73
256 257 1.341156 AATCCTCTCCCTTCTGCCGG 61.341 60.000 0.00 0.00 0.00 6.13
257 258 0.105778 GAATCCTCTCCCTTCTGCCG 59.894 60.000 0.00 0.00 0.00 5.69
258 259 1.134250 GTGAATCCTCTCCCTTCTGCC 60.134 57.143 0.00 0.00 0.00 4.85
259 260 1.556911 TGTGAATCCTCTCCCTTCTGC 59.443 52.381 0.00 0.00 0.00 4.26
260 261 4.500499 AATGTGAATCCTCTCCCTTCTG 57.500 45.455 0.00 0.00 0.00 3.02
261 262 6.838401 AATAATGTGAATCCTCTCCCTTCT 57.162 37.500 0.00 0.00 0.00 2.85
262 263 7.967908 TCTAATAATGTGAATCCTCTCCCTTC 58.032 38.462 0.00 0.00 0.00 3.46
263 264 7.937700 TCTAATAATGTGAATCCTCTCCCTT 57.062 36.000 0.00 0.00 0.00 3.95
264 265 7.937700 TTCTAATAATGTGAATCCTCTCCCT 57.062 36.000 0.00 0.00 0.00 4.20
293 294 8.540507 TGGCCTGGCAAAACTATATATAAAAA 57.459 30.769 22.05 0.00 0.00 1.94
294 295 8.584157 CATGGCCTGGCAAAACTATATATAAAA 58.416 33.333 22.05 0.00 0.00 1.52
295 296 7.309744 GCATGGCCTGGCAAAACTATATATAAA 60.310 37.037 22.05 0.00 0.00 1.40
296 297 6.152661 GCATGGCCTGGCAAAACTATATATAA 59.847 38.462 22.05 0.00 0.00 0.98
297 298 5.652014 GCATGGCCTGGCAAAACTATATATA 59.348 40.000 22.05 0.00 0.00 0.86
298 299 4.463891 GCATGGCCTGGCAAAACTATATAT 59.536 41.667 22.05 0.00 0.00 0.86
299 300 3.826157 GCATGGCCTGGCAAAACTATATA 59.174 43.478 22.05 0.00 0.00 0.86
300 301 2.629617 GCATGGCCTGGCAAAACTATAT 59.370 45.455 22.05 0.00 0.00 0.86
301 302 2.031120 GCATGGCCTGGCAAAACTATA 58.969 47.619 22.05 0.00 0.00 1.31
302 303 0.826062 GCATGGCCTGGCAAAACTAT 59.174 50.000 22.05 1.72 0.00 2.12
303 304 0.251742 AGCATGGCCTGGCAAAACTA 60.252 50.000 22.05 0.00 0.00 2.24
304 305 1.534717 AGCATGGCCTGGCAAAACT 60.535 52.632 22.05 8.24 0.00 2.66
305 306 1.079612 GAGCATGGCCTGGCAAAAC 60.080 57.895 22.05 5.76 0.00 2.43
306 307 2.285024 GGAGCATGGCCTGGCAAAA 61.285 57.895 22.05 5.66 0.00 2.44
307 308 2.681064 GGAGCATGGCCTGGCAAA 60.681 61.111 22.05 8.51 0.00 3.68
308 309 2.735151 AAAGGAGCATGGCCTGGCAA 62.735 55.000 22.05 10.36 35.50 4.52
309 310 2.735151 AAAAGGAGCATGGCCTGGCA 62.735 55.000 22.05 5.12 35.50 4.92
310 311 1.953231 GAAAAGGAGCATGGCCTGGC 61.953 60.000 11.05 11.05 35.50 4.85
311 312 0.324091 AGAAAAGGAGCATGGCCTGG 60.324 55.000 3.32 0.00 35.50 4.45
312 313 1.101331 GAGAAAAGGAGCATGGCCTG 58.899 55.000 3.32 0.34 35.50 4.85
313 314 0.998145 AGAGAAAAGGAGCATGGCCT 59.002 50.000 3.32 0.00 37.35 5.19
314 315 1.101331 CAGAGAAAAGGAGCATGGCC 58.899 55.000 0.00 0.00 0.00 5.36
315 316 1.101331 CCAGAGAAAAGGAGCATGGC 58.899 55.000 0.00 0.00 0.00 4.40
316 317 2.641305 CTCCAGAGAAAAGGAGCATGG 58.359 52.381 0.00 0.00 44.37 3.66
333 334 5.144692 TCATTCGATGATGGAAGATCTCC 57.855 43.478 0.00 0.00 38.42 3.71
365 366 9.251440 ACAAGAGTAGGAACACATTATGTACTA 57.749 33.333 0.00 0.00 42.31 1.82
366 367 8.135382 ACAAGAGTAGGAACACATTATGTACT 57.865 34.615 0.00 0.00 42.31 2.73
367 368 9.517609 CTACAAGAGTAGGAACACATTATGTAC 57.482 37.037 0.00 0.00 41.54 2.90
381 382 7.781768 GCAGTACGCTAATACTACAAGAGTAGG 60.782 44.444 7.48 0.00 43.98 3.18
382 383 7.070798 GCAGTACGCTAATACTACAAGAGTAG 58.929 42.308 1.35 1.35 44.62 2.57
383 384 6.017605 GGCAGTACGCTAATACTACAAGAGTA 60.018 42.308 9.06 0.00 42.14 2.59
384 385 5.221009 GGCAGTACGCTAATACTACAAGAGT 60.221 44.000 9.06 0.00 40.76 3.24
385 386 5.213675 GGCAGTACGCTAATACTACAAGAG 58.786 45.833 9.06 0.00 41.91 2.85
386 387 4.260907 CGGCAGTACGCTAATACTACAAGA 60.261 45.833 9.06 0.00 41.91 3.02
387 388 3.973135 CGGCAGTACGCTAATACTACAAG 59.027 47.826 9.06 0.00 41.91 3.16
388 389 3.378112 ACGGCAGTACGCTAATACTACAA 59.622 43.478 9.06 0.00 41.91 2.41
389 390 2.945008 ACGGCAGTACGCTAATACTACA 59.055 45.455 9.06 0.00 41.91 2.74
390 391 3.549574 GACGGCAGTACGCTAATACTAC 58.450 50.000 9.06 0.00 41.91 2.73
391 392 2.221749 CGACGGCAGTACGCTAATACTA 59.778 50.000 9.06 0.00 41.91 1.82
392 393 1.003116 CGACGGCAGTACGCTAATACT 60.003 52.381 9.06 0.00 41.91 2.12
393 394 1.003545 TCGACGGCAGTACGCTAATAC 60.004 52.381 9.06 0.00 41.91 1.89
394 395 1.003545 GTCGACGGCAGTACGCTAATA 60.004 52.381 0.00 0.00 41.91 0.98
395 396 0.248377 GTCGACGGCAGTACGCTAAT 60.248 55.000 0.00 0.00 41.91 1.73
396 397 1.135315 GTCGACGGCAGTACGCTAA 59.865 57.895 0.00 0.00 41.91 3.09
397 398 0.460109 TAGTCGACGGCAGTACGCTA 60.460 55.000 10.46 0.39 41.91 4.26
398 399 1.094073 ATAGTCGACGGCAGTACGCT 61.094 55.000 10.46 1.24 41.91 5.07
399 400 0.928908 CATAGTCGACGGCAGTACGC 60.929 60.000 10.46 1.72 41.28 4.42
400 401 0.316772 CCATAGTCGACGGCAGTACG 60.317 60.000 10.46 0.00 40.31 3.67
401 402 1.019673 TCCATAGTCGACGGCAGTAC 58.980 55.000 10.46 0.00 0.00 2.73
402 403 1.753930 TTCCATAGTCGACGGCAGTA 58.246 50.000 10.46 0.00 0.00 2.74
403 404 1.112113 ATTCCATAGTCGACGGCAGT 58.888 50.000 10.46 0.00 0.00 4.40
404 405 1.067060 TCATTCCATAGTCGACGGCAG 59.933 52.381 10.46 1.01 0.00 4.85
405 406 1.107945 TCATTCCATAGTCGACGGCA 58.892 50.000 10.46 0.00 0.00 5.69
406 407 2.218953 TTCATTCCATAGTCGACGGC 57.781 50.000 10.46 0.00 0.00 5.68
407 408 3.782046 AGTTTCATTCCATAGTCGACGG 58.218 45.455 10.46 5.73 0.00 4.79
408 409 3.797256 GGAGTTTCATTCCATAGTCGACG 59.203 47.826 10.46 0.00 34.74 5.12
409 410 4.120589 GGGAGTTTCATTCCATAGTCGAC 58.879 47.826 7.70 7.70 36.40 4.20
410 411 4.030913 AGGGAGTTTCATTCCATAGTCGA 58.969 43.478 0.00 0.00 36.40 4.20
411 412 4.408182 AGGGAGTTTCATTCCATAGTCG 57.592 45.455 0.00 0.00 36.40 4.18
412 413 7.993183 TGAAATAGGGAGTTTCATTCCATAGTC 59.007 37.037 0.00 0.00 39.81 2.59
413 414 7.872138 TGAAATAGGGAGTTTCATTCCATAGT 58.128 34.615 0.00 0.00 39.81 2.12
422 423 8.704849 TTTTTGAGATGAAATAGGGAGTTTCA 57.295 30.769 4.06 4.06 46.16 2.69
503 510 0.657840 GCGCCTACACAATGGATGTC 59.342 55.000 0.00 0.00 41.46 3.06
508 515 1.423845 GAACGCGCCTACACAATGG 59.576 57.895 5.73 0.00 0.00 3.16
510 517 0.109179 TACGAACGCGCCTACACAAT 60.109 50.000 5.73 0.00 42.48 2.71
527 534 6.456988 CGCTACAATTGAGGAGGTGAATTTAC 60.457 42.308 13.59 0.00 0.00 2.01
530 537 3.941483 CGCTACAATTGAGGAGGTGAATT 59.059 43.478 13.59 0.00 0.00 2.17
535 542 3.418684 AAACGCTACAATTGAGGAGGT 57.581 42.857 13.59 1.70 0.00 3.85
536 543 4.755411 TCTAAACGCTACAATTGAGGAGG 58.245 43.478 13.59 0.00 0.00 4.30
547 554 4.274865 GCATGCTCAAATCTAAACGCTAC 58.725 43.478 11.37 0.00 0.00 3.58
589 596 6.053632 TCAGGCATTGAAGAATCAGTAGAA 57.946 37.500 0.00 0.00 36.78 2.10
644 652 5.920273 GTGGTCGATTGTCAATTTGTGATTT 59.080 36.000 0.00 0.00 38.90 2.17
678 686 2.579787 AGAATTCGAGACCGCGCG 60.580 61.111 25.67 25.67 38.75 6.86
679 687 2.998667 CAGAATTCGAGACCGCGC 59.001 61.111 0.00 0.00 35.37 6.86
680 688 2.517450 GGCAGAATTCGAGACCGCG 61.517 63.158 0.00 0.00 35.37 6.46
688 696 1.393539 CGTGGTAACTGGCAGAATTCG 59.606 52.381 23.66 13.24 37.61 3.34
702 710 3.830178 CCCCACATCATCTATACGTGGTA 59.170 47.826 0.00 0.00 44.60 3.25
704 712 2.897326 TCCCCACATCATCTATACGTGG 59.103 50.000 0.00 0.00 45.46 4.94
706 714 5.825593 ATTTCCCCACATCATCTATACGT 57.174 39.130 0.00 0.00 0.00 3.57
707 715 7.555965 TCATATTTCCCCACATCATCTATACG 58.444 38.462 0.00 0.00 0.00 3.06
708 716 9.167311 GTTCATATTTCCCCACATCATCTATAC 57.833 37.037 0.00 0.00 0.00 1.47
709 717 9.116080 AGTTCATATTTCCCCACATCATCTATA 57.884 33.333 0.00 0.00 0.00 1.31
710 718 7.886970 CAGTTCATATTTCCCCACATCATCTAT 59.113 37.037 0.00 0.00 0.00 1.98
718 726 4.380843 ACACAGTTCATATTTCCCCACA 57.619 40.909 0.00 0.00 0.00 4.17
720 728 6.307776 TGTTTACACAGTTCATATTTCCCCA 58.692 36.000 0.00 0.00 0.00 4.96
793 801 8.812329 CGCATAGTATATTCTAGCCTTGATTTC 58.188 37.037 0.00 0.00 0.00 2.17
798 808 5.967088 ACCGCATAGTATATTCTAGCCTTG 58.033 41.667 0.00 0.00 0.00 3.61
813 823 5.478233 TTTAATGCACAGTTACCGCATAG 57.522 39.130 5.21 0.00 45.33 2.23
814 824 5.881777 TTTTAATGCACAGTTACCGCATA 57.118 34.783 5.21 0.00 45.33 3.14
836 849 3.290710 AGGATCGCCTGCATTAATGTTT 58.709 40.909 16.61 0.00 44.90 2.83
873 886 7.083875 TCCACGTCATAATTGGAAAGAAATC 57.916 36.000 0.00 0.00 36.45 2.17
890 904 4.049186 ACAAGCGTATAATCATCCACGTC 58.951 43.478 0.00 0.00 36.78 4.34
903 917 5.991328 ATCAAATCGAATGACAAGCGTAT 57.009 34.783 6.44 0.00 0.00 3.06
907 921 5.277538 GGGAGTATCAAATCGAATGACAAGC 60.278 44.000 6.44 0.00 36.25 4.01
932 946 3.035363 TGAGCGGATGGTGGTCTTATAA 58.965 45.455 0.00 0.00 34.99 0.98
949 966 0.242017 GGTGTGTTTGCCAGATGAGC 59.758 55.000 0.00 0.00 0.00 4.26
1098 1152 0.180171 CACACAGGGTGGACAACTCA 59.820 55.000 0.00 0.00 44.04 3.41
1116 1170 3.662153 TAGCACACGTCGACGCCA 61.662 61.111 35.92 13.08 44.43 5.69
1173 1227 0.745468 GGACAGACGGATACACCTCC 59.255 60.000 0.00 0.00 36.31 4.30
1218 1272 3.234630 CTCCGGCGTGGACCTGAAA 62.235 63.158 6.01 0.00 43.74 2.69
1326 1380 3.302347 CTCGAGCAGGTGGGTGTCC 62.302 68.421 0.00 0.00 0.00 4.02
1337 1391 0.601046 CAGCACCTTTGTCTCGAGCA 60.601 55.000 7.81 6.50 0.00 4.26
1449 1503 1.021202 TGCAGTCACCGACCTTTTTG 58.979 50.000 0.00 0.00 32.18 2.44
1524 1578 2.629656 GGCATTGACGTTGGCAGCT 61.630 57.895 7.35 0.00 39.31 4.24
1572 1626 1.841556 TCCGGCCTTGACAACCTCT 60.842 57.895 0.00 0.00 0.00 3.69
1701 1755 2.172679 TGCACACGGTCTCCTTATACA 58.827 47.619 0.00 0.00 0.00 2.29
1723 1777 4.389687 GCCTTTATTTTGATGCCAACACTG 59.610 41.667 0.00 0.00 30.88 3.66
1860 2255 8.842358 TTGTTTCGATCCTTCCCATATATAAC 57.158 34.615 0.00 0.00 0.00 1.89
1869 2264 3.939066 TCTTCTTGTTTCGATCCTTCCC 58.061 45.455 0.00 0.00 0.00 3.97
1878 2273 4.725556 TGGTCGATTTCTTCTTGTTTCG 57.274 40.909 0.00 0.00 0.00 3.46
2198 2628 1.067776 AGCGGAGGAACTGTAAAGACG 60.068 52.381 0.00 0.00 41.55 4.18
2264 2694 9.850628 GAGTATAAAAGTTTTGATTTACCACCC 57.149 33.333 11.18 0.00 0.00 4.61
2589 3024 8.003044 ACAAATATCAATCTGATCCCAGTGATT 58.997 33.333 8.67 0.96 41.16 2.57
2658 3093 6.856135 AAAACGCTTAAGGCATAGGTATAC 57.144 37.500 4.29 0.00 41.91 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.