Multiple sequence alignment - TraesCS7D01G547600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G547600 chr7D 100.000 2622 0 0 1 2622 633537851 633540472 0.000000e+00 4843
1 TraesCS7D01G547600 chr7B 92.746 1089 56 12 566 1640 749558856 749559935 0.000000e+00 1552
2 TraesCS7D01G547600 chr7B 91.129 372 22 5 2253 2620 749562142 749562506 6.520000e-136 494
3 TraesCS7D01G547600 chr7B 94.966 298 14 1 284 580 749558363 749558660 1.420000e-127 466
4 TraesCS7D01G547600 chr7B 90.526 190 16 2 1988 2176 749561438 749561626 1.560000e-62 250
5 TraesCS7D01G547600 chr7B 89.831 118 3 1 1889 1997 749560034 749560151 2.720000e-30 143
6 TraesCS7D01G547600 chr7A 90.276 761 68 5 871 1629 733514121 733513365 0.000000e+00 990
7 TraesCS7D01G547600 chr7A 93.095 391 22 3 1791 2179 733511975 733511588 3.790000e-158 568
8 TraesCS7D01G547600 chr7A 93.834 373 18 2 2253 2620 733511170 733510798 8.200000e-155 556
9 TraesCS7D01G547600 chr7A 88.372 344 29 7 287 627 733520781 733520446 1.130000e-108 403
10 TraesCS7D01G547600 chr7A 92.308 52 4 0 2181 2232 733511298 733511247 1.010000e-09 75
11 TraesCS7D01G547600 chr2A 77.504 649 114 21 999 1641 695523882 695523260 6.900000e-96 361
12 TraesCS7D01G547600 chr2B 77.029 653 116 24 990 1636 663141611 663140987 6.950000e-91 344
13 TraesCS7D01G547600 chr6D 76.526 213 36 11 865 1077 283809911 283809713 1.280000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G547600 chr7D 633537851 633540472 2621 False 4843.00 4843 100.00000 1 2622 1 chr7D.!!$F1 2621
1 TraesCS7D01G547600 chr7B 749558363 749562506 4143 False 581.00 1552 91.83960 284 2620 5 chr7B.!!$F1 2336
2 TraesCS7D01G547600 chr7A 733510798 733514121 3323 True 547.25 990 92.37825 871 2620 4 chr7A.!!$R2 1749
3 TraesCS7D01G547600 chr2A 695523260 695523882 622 True 361.00 361 77.50400 999 1641 1 chr2A.!!$R1 642
4 TraesCS7D01G547600 chr2B 663140987 663141611 624 True 344.00 344 77.02900 990 1636 1 chr2B.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.100146 AGCTAACTACGTACGCCAGC 59.9 55.0 16.72 15.76 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2466 0.038744 CCTGACTGGCACATCCCTTT 59.961 55.0 0.0 0.0 38.2 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.063510 TGAATTCAACCTGCTCTCCTG 57.936 47.619 5.45 0.00 0.00 3.86
21 22 2.373169 TGAATTCAACCTGCTCTCCTGT 59.627 45.455 5.45 0.00 0.00 4.00
22 23 2.777832 ATTCAACCTGCTCTCCTGTC 57.222 50.000 0.00 0.00 0.00 3.51
23 24 0.318441 TTCAACCTGCTCTCCTGTCG 59.682 55.000 0.00 0.00 0.00 4.35
24 25 1.739562 CAACCTGCTCTCCTGTCGC 60.740 63.158 0.00 0.00 0.00 5.19
25 26 2.948720 AACCTGCTCTCCTGTCGCC 61.949 63.158 0.00 0.00 0.00 5.54
26 27 4.504916 CCTGCTCTCCTGTCGCCG 62.505 72.222 0.00 0.00 0.00 6.46
30 31 4.056125 CTCTCCTGTCGCCGCACA 62.056 66.667 0.00 0.00 0.00 4.57
31 32 4.357947 TCTCCTGTCGCCGCACAC 62.358 66.667 0.00 0.00 0.00 3.82
42 43 2.507102 CGCACACGGTCAGCCTAG 60.507 66.667 0.00 0.00 34.97 3.02
43 44 2.815647 GCACACGGTCAGCCTAGC 60.816 66.667 0.00 0.00 0.00 3.42
44 45 2.973899 CACACGGTCAGCCTAGCT 59.026 61.111 0.00 0.00 40.77 3.32
45 46 1.945354 GCACACGGTCAGCCTAGCTA 61.945 60.000 0.00 0.00 36.40 3.32
46 47 0.530744 CACACGGTCAGCCTAGCTAA 59.469 55.000 0.00 0.00 36.40 3.09
47 48 0.531200 ACACGGTCAGCCTAGCTAAC 59.469 55.000 0.00 0.00 36.40 2.34
48 49 0.818296 CACGGTCAGCCTAGCTAACT 59.182 55.000 0.00 0.00 36.40 2.24
49 50 2.022195 CACGGTCAGCCTAGCTAACTA 58.978 52.381 0.00 0.00 36.40 2.24
50 51 2.022934 ACGGTCAGCCTAGCTAACTAC 58.977 52.381 0.00 0.00 36.40 2.73
51 52 1.002684 CGGTCAGCCTAGCTAACTACG 60.003 57.143 0.00 0.00 36.40 3.51
52 53 2.022934 GGTCAGCCTAGCTAACTACGT 58.977 52.381 0.00 0.00 36.40 3.57
53 54 3.209410 GGTCAGCCTAGCTAACTACGTA 58.791 50.000 0.00 0.00 36.40 3.57
54 55 3.003171 GGTCAGCCTAGCTAACTACGTAC 59.997 52.174 0.00 0.00 36.40 3.67
55 56 2.868583 TCAGCCTAGCTAACTACGTACG 59.131 50.000 15.01 15.01 36.40 3.67
56 57 1.601430 AGCCTAGCTAACTACGTACGC 59.399 52.381 16.72 0.00 36.99 4.42
57 58 1.334509 GCCTAGCTAACTACGTACGCC 60.335 57.143 16.72 0.00 0.00 5.68
58 59 1.942657 CCTAGCTAACTACGTACGCCA 59.057 52.381 16.72 2.17 0.00 5.69
59 60 2.032204 CCTAGCTAACTACGTACGCCAG 60.032 54.545 16.72 15.17 0.00 4.85
60 61 0.100146 AGCTAACTACGTACGCCAGC 59.900 55.000 16.72 15.76 0.00 4.85
61 62 1.198608 GCTAACTACGTACGCCAGCG 61.199 60.000 16.72 11.05 46.03 5.18
62 63 0.590732 CTAACTACGTACGCCAGCGG 60.591 60.000 16.72 0.92 44.69 5.52
63 64 1.305219 TAACTACGTACGCCAGCGGT 61.305 55.000 16.72 7.29 44.69 5.68
64 65 2.277756 CTACGTACGCCAGCGGTC 60.278 66.667 16.72 7.72 44.69 4.79
65 66 2.747460 TACGTACGCCAGCGGTCT 60.747 61.111 16.72 0.00 44.69 3.85
66 67 2.914797 CTACGTACGCCAGCGGTCTG 62.915 65.000 16.72 5.71 44.69 3.51
67 68 4.415332 CGTACGCCAGCGGTCTGT 62.415 66.667 17.33 0.00 44.69 3.41
68 69 2.506438 GTACGCCAGCGGTCTGTC 60.506 66.667 17.33 0.00 44.69 3.51
69 70 3.755628 TACGCCAGCGGTCTGTCC 61.756 66.667 17.33 0.00 44.69 4.02
86 87 2.287251 CCCCCTACCTCCTCCCTG 59.713 72.222 0.00 0.00 0.00 4.45
87 88 2.333462 CCCCCTACCTCCTCCCTGA 61.333 68.421 0.00 0.00 0.00 3.86
88 89 1.075151 CCCCTACCTCCTCCCTGAC 60.075 68.421 0.00 0.00 0.00 3.51
89 90 1.595058 CCCCTACCTCCTCCCTGACT 61.595 65.000 0.00 0.00 0.00 3.41
90 91 0.340208 CCCTACCTCCTCCCTGACTT 59.660 60.000 0.00 0.00 0.00 3.01
91 92 1.689892 CCCTACCTCCTCCCTGACTTC 60.690 61.905 0.00 0.00 0.00 3.01
92 93 1.007238 CCTACCTCCTCCCTGACTTCA 59.993 57.143 0.00 0.00 0.00 3.02
93 94 2.383855 CTACCTCCTCCCTGACTTCAG 58.616 57.143 0.00 0.00 43.40 3.02
103 104 2.758736 CTGACTTCAGGCTAACAGCT 57.241 50.000 0.00 0.00 41.99 4.24
104 105 2.615869 CTGACTTCAGGCTAACAGCTC 58.384 52.381 0.00 0.00 41.99 4.09
105 106 2.233431 CTGACTTCAGGCTAACAGCTCT 59.767 50.000 0.00 0.00 41.99 4.09
106 107 2.232452 TGACTTCAGGCTAACAGCTCTC 59.768 50.000 0.00 0.00 41.99 3.20
107 108 2.495669 GACTTCAGGCTAACAGCTCTCT 59.504 50.000 0.00 0.00 41.99 3.10
108 109 2.495669 ACTTCAGGCTAACAGCTCTCTC 59.504 50.000 0.00 0.00 41.99 3.20
109 110 2.523325 TCAGGCTAACAGCTCTCTCT 57.477 50.000 0.00 0.00 41.99 3.10
110 111 2.813907 TCAGGCTAACAGCTCTCTCTT 58.186 47.619 0.00 0.00 41.99 2.85
111 112 2.757868 TCAGGCTAACAGCTCTCTCTTC 59.242 50.000 0.00 0.00 41.99 2.87
112 113 2.495270 CAGGCTAACAGCTCTCTCTTCA 59.505 50.000 0.00 0.00 41.99 3.02
113 114 3.132646 CAGGCTAACAGCTCTCTCTTCAT 59.867 47.826 0.00 0.00 41.99 2.57
114 115 3.774216 AGGCTAACAGCTCTCTCTTCATT 59.226 43.478 0.00 0.00 41.99 2.57
115 116 4.224818 AGGCTAACAGCTCTCTCTTCATTT 59.775 41.667 0.00 0.00 41.99 2.32
116 117 4.940654 GGCTAACAGCTCTCTCTTCATTTT 59.059 41.667 0.00 0.00 41.99 1.82
117 118 5.064579 GGCTAACAGCTCTCTCTTCATTTTC 59.935 44.000 0.00 0.00 41.99 2.29
118 119 5.641209 GCTAACAGCTCTCTCTTCATTTTCA 59.359 40.000 0.00 0.00 38.45 2.69
119 120 6.183360 GCTAACAGCTCTCTCTTCATTTTCAG 60.183 42.308 0.00 0.00 38.45 3.02
120 121 5.226194 ACAGCTCTCTCTTCATTTTCAGT 57.774 39.130 0.00 0.00 0.00 3.41
121 122 6.352016 ACAGCTCTCTCTTCATTTTCAGTA 57.648 37.500 0.00 0.00 0.00 2.74
122 123 6.397272 ACAGCTCTCTCTTCATTTTCAGTAG 58.603 40.000 0.00 0.00 0.00 2.57
123 124 5.291614 CAGCTCTCTCTTCATTTTCAGTAGC 59.708 44.000 0.00 0.00 0.00 3.58
124 125 5.046735 AGCTCTCTCTTCATTTTCAGTAGCA 60.047 40.000 0.00 0.00 0.00 3.49
125 126 5.641209 GCTCTCTCTTCATTTTCAGTAGCAA 59.359 40.000 0.00 0.00 0.00 3.91
126 127 6.315891 GCTCTCTCTTCATTTTCAGTAGCAAT 59.684 38.462 0.00 0.00 0.00 3.56
127 128 7.148272 GCTCTCTCTTCATTTTCAGTAGCAATT 60.148 37.037 0.00 0.00 0.00 2.32
128 129 8.261492 TCTCTCTTCATTTTCAGTAGCAATTC 57.739 34.615 0.00 0.00 0.00 2.17
129 130 7.879677 TCTCTCTTCATTTTCAGTAGCAATTCA 59.120 33.333 0.00 0.00 0.00 2.57
130 131 7.810658 TCTCTTCATTTTCAGTAGCAATTCAC 58.189 34.615 0.00 0.00 0.00 3.18
131 132 6.602179 TCTTCATTTTCAGTAGCAATTCACG 58.398 36.000 0.00 0.00 0.00 4.35
132 133 6.426633 TCTTCATTTTCAGTAGCAATTCACGA 59.573 34.615 0.00 0.00 0.00 4.35
133 134 6.169419 TCATTTTCAGTAGCAATTCACGAG 57.831 37.500 0.00 0.00 0.00 4.18
134 135 4.404507 TTTTCAGTAGCAATTCACGAGC 57.595 40.909 0.00 0.00 0.00 5.03
135 136 2.741759 TCAGTAGCAATTCACGAGCA 57.258 45.000 0.00 0.00 0.00 4.26
136 137 3.038788 TCAGTAGCAATTCACGAGCAA 57.961 42.857 0.00 0.00 0.00 3.91
137 138 3.398406 TCAGTAGCAATTCACGAGCAAA 58.602 40.909 0.00 0.00 0.00 3.68
138 139 3.812609 TCAGTAGCAATTCACGAGCAAAA 59.187 39.130 0.00 0.00 0.00 2.44
139 140 3.908382 CAGTAGCAATTCACGAGCAAAAC 59.092 43.478 0.00 0.00 0.00 2.43
140 141 2.422276 AGCAATTCACGAGCAAAACC 57.578 45.000 0.00 0.00 0.00 3.27
141 142 1.680735 AGCAATTCACGAGCAAAACCA 59.319 42.857 0.00 0.00 0.00 3.67
142 143 2.053627 GCAATTCACGAGCAAAACCAG 58.946 47.619 0.00 0.00 0.00 4.00
143 144 2.053627 CAATTCACGAGCAAAACCAGC 58.946 47.619 0.00 0.00 0.00 4.85
144 145 1.609208 ATTCACGAGCAAAACCAGCT 58.391 45.000 0.00 0.00 46.82 4.24
145 146 0.662619 TTCACGAGCAAAACCAGCTG 59.337 50.000 6.78 6.78 43.58 4.24
146 147 0.179059 TCACGAGCAAAACCAGCTGA 60.179 50.000 17.39 0.00 43.58 4.26
147 148 0.236711 CACGAGCAAAACCAGCTGAG 59.763 55.000 17.39 8.04 43.58 3.35
148 149 0.886490 ACGAGCAAAACCAGCTGAGG 60.886 55.000 17.39 0.81 43.58 3.86
149 150 0.886490 CGAGCAAAACCAGCTGAGGT 60.886 55.000 17.39 1.63 43.58 3.85
150 151 0.877743 GAGCAAAACCAGCTGAGGTC 59.122 55.000 17.39 10.43 43.58 3.85
151 152 0.183492 AGCAAAACCAGCTGAGGTCA 59.817 50.000 17.39 0.00 42.25 4.02
152 153 0.595095 GCAAAACCAGCTGAGGTCAG 59.405 55.000 17.39 2.37 42.25 3.51
160 161 2.346365 CTGAGGTCAGCAGCTGCA 59.654 61.111 38.24 18.36 45.16 4.41
161 162 1.302271 CTGAGGTCAGCAGCTGCAA 60.302 57.895 38.24 24.08 45.16 4.08
162 163 1.299562 CTGAGGTCAGCAGCTGCAAG 61.300 60.000 38.24 29.16 45.16 4.01
163 164 2.033757 AGGTCAGCAGCTGCAAGG 59.966 61.111 38.24 26.47 45.16 3.61
164 165 3.745803 GGTCAGCAGCTGCAAGGC 61.746 66.667 38.24 29.96 45.16 4.35
165 166 2.672307 GTCAGCAGCTGCAAGGCT 60.672 61.111 38.24 16.73 45.16 4.58
166 167 2.359602 TCAGCAGCTGCAAGGCTC 60.360 61.111 38.24 9.36 45.16 4.70
167 168 3.800863 CAGCAGCTGCAAGGCTCG 61.801 66.667 38.24 14.55 45.16 5.03
168 169 4.326507 AGCAGCTGCAAGGCTCGT 62.327 61.111 38.24 14.33 45.16 4.18
169 170 3.797546 GCAGCTGCAAGGCTCGTC 61.798 66.667 33.36 0.00 41.00 4.20
170 171 3.123620 CAGCTGCAAGGCTCGTCC 61.124 66.667 0.00 0.00 41.00 4.79
171 172 3.630013 AGCTGCAAGGCTCGTCCA 61.630 61.111 1.02 0.00 38.24 4.02
172 173 2.669569 GCTGCAAGGCTCGTCCAA 60.670 61.111 0.00 0.00 37.29 3.53
173 174 2.042831 GCTGCAAGGCTCGTCCAAT 61.043 57.895 0.00 0.00 37.29 3.16
174 175 1.798735 CTGCAAGGCTCGTCCAATG 59.201 57.895 0.00 0.26 37.29 2.82
175 176 1.651240 CTGCAAGGCTCGTCCAATGG 61.651 60.000 0.00 0.00 37.29 3.16
176 177 1.675641 GCAAGGCTCGTCCAATGGT 60.676 57.895 0.00 0.00 37.29 3.55
177 178 1.926511 GCAAGGCTCGTCCAATGGTG 61.927 60.000 0.00 0.00 37.29 4.17
178 179 1.675641 AAGGCTCGTCCAATGGTGC 60.676 57.895 0.00 0.13 37.29 5.01
179 180 3.499737 GGCTCGTCCAATGGTGCG 61.500 66.667 11.33 11.33 34.01 5.34
180 181 2.434185 GCTCGTCCAATGGTGCGA 60.434 61.111 17.00 17.00 32.85 5.10
181 182 2.032634 GCTCGTCCAATGGTGCGAA 61.033 57.895 18.06 6.92 33.24 4.70
182 183 1.970917 GCTCGTCCAATGGTGCGAAG 61.971 60.000 18.06 14.02 33.24 3.79
196 197 2.725644 CGAAGCAAGTCGATGTCGT 58.274 52.632 2.04 0.00 43.86 4.34
197 198 0.635731 CGAAGCAAGTCGATGTCGTC 59.364 55.000 2.04 0.00 43.86 4.20
205 206 2.944557 CGATGTCGTCGCGGTCAG 60.945 66.667 6.13 0.00 44.33 3.51
206 207 2.579787 GATGTCGTCGCGGTCAGG 60.580 66.667 6.13 0.00 0.00 3.86
207 208 4.796231 ATGTCGTCGCGGTCAGGC 62.796 66.667 6.13 0.00 0.00 4.85
210 211 4.287781 TCGTCGCGGTCAGGCAAA 62.288 61.111 6.13 0.00 0.00 3.68
211 212 3.777925 CGTCGCGGTCAGGCAAAG 61.778 66.667 6.13 0.00 0.00 2.77
212 213 3.423154 GTCGCGGTCAGGCAAAGG 61.423 66.667 6.13 0.00 0.00 3.11
213 214 3.936203 TCGCGGTCAGGCAAAGGT 61.936 61.111 6.13 0.00 0.00 3.50
214 215 3.726517 CGCGGTCAGGCAAAGGTG 61.727 66.667 0.00 0.00 0.00 4.00
215 216 2.281484 GCGGTCAGGCAAAGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
216 217 2.328099 GCGGTCAGGCAAAGGTGAG 61.328 63.158 0.00 0.00 0.00 3.51
217 218 1.071471 CGGTCAGGCAAAGGTGAGT 59.929 57.895 0.00 0.00 0.00 3.41
218 219 1.230635 CGGTCAGGCAAAGGTGAGTG 61.231 60.000 0.00 0.00 0.00 3.51
219 220 0.108585 GGTCAGGCAAAGGTGAGTGA 59.891 55.000 0.00 0.00 0.00 3.41
220 221 1.517242 GTCAGGCAAAGGTGAGTGAG 58.483 55.000 0.00 0.00 0.00 3.51
221 222 1.131638 TCAGGCAAAGGTGAGTGAGT 58.868 50.000 0.00 0.00 0.00 3.41
222 223 1.070758 TCAGGCAAAGGTGAGTGAGTC 59.929 52.381 0.00 0.00 0.00 3.36
223 224 1.131638 AGGCAAAGGTGAGTGAGTCA 58.868 50.000 0.00 0.00 0.00 3.41
224 225 1.701847 AGGCAAAGGTGAGTGAGTCAT 59.298 47.619 0.00 0.00 37.56 3.06
225 226 2.079925 GGCAAAGGTGAGTGAGTCATC 58.920 52.381 0.00 0.00 37.56 2.92
226 227 2.550855 GGCAAAGGTGAGTGAGTCATCA 60.551 50.000 3.03 0.00 39.00 3.07
227 228 3.141398 GCAAAGGTGAGTGAGTCATCAA 58.859 45.455 3.03 0.00 39.00 2.57
228 229 3.058639 GCAAAGGTGAGTGAGTCATCAAC 60.059 47.826 3.03 10.77 39.00 3.18
229 230 3.409026 AAGGTGAGTGAGTCATCAACC 57.591 47.619 13.63 12.50 39.00 3.77
230 231 1.625818 AGGTGAGTGAGTCATCAACCC 59.374 52.381 14.23 9.35 39.00 4.11
231 232 1.339151 GGTGAGTGAGTCATCAACCCC 60.339 57.143 0.00 0.00 36.15 4.95
232 233 0.984230 TGAGTGAGTCATCAACCCCC 59.016 55.000 0.00 0.00 37.14 5.40
233 234 0.984230 GAGTGAGTCATCAACCCCCA 59.016 55.000 0.00 0.00 37.14 4.96
234 235 0.987294 AGTGAGTCATCAACCCCCAG 59.013 55.000 0.00 0.00 37.14 4.45
235 236 0.693049 GTGAGTCATCAACCCCCAGT 59.307 55.000 0.00 0.00 37.14 4.00
236 237 1.073923 GTGAGTCATCAACCCCCAGTT 59.926 52.381 0.00 0.00 40.16 3.16
237 238 1.780309 TGAGTCATCAACCCCCAGTTT 59.220 47.619 0.00 0.00 36.18 2.66
238 239 2.983192 TGAGTCATCAACCCCCAGTTTA 59.017 45.455 0.00 0.00 36.18 2.01
239 240 3.244770 TGAGTCATCAACCCCCAGTTTAC 60.245 47.826 0.00 0.00 36.18 2.01
240 241 2.986728 AGTCATCAACCCCCAGTTTACT 59.013 45.455 0.00 0.00 36.18 2.24
241 242 3.009143 AGTCATCAACCCCCAGTTTACTC 59.991 47.826 0.00 0.00 36.18 2.59
242 243 2.307686 TCATCAACCCCCAGTTTACTCC 59.692 50.000 0.00 0.00 36.18 3.85
243 244 2.127651 TCAACCCCCAGTTTACTCCT 57.872 50.000 0.00 0.00 36.18 3.69
244 245 1.702957 TCAACCCCCAGTTTACTCCTG 59.297 52.381 0.00 0.00 36.18 3.86
245 246 0.404426 AACCCCCAGTTTACTCCTGC 59.596 55.000 0.00 0.00 33.89 4.85
246 247 1.303282 CCCCCAGTTTACTCCTGCC 59.697 63.158 0.00 0.00 0.00 4.85
247 248 1.208165 CCCCCAGTTTACTCCTGCCT 61.208 60.000 0.00 0.00 0.00 4.75
248 249 0.698818 CCCCAGTTTACTCCTGCCTT 59.301 55.000 0.00 0.00 0.00 4.35
249 250 1.340114 CCCCAGTTTACTCCTGCCTTC 60.340 57.143 0.00 0.00 0.00 3.46
250 251 1.340114 CCCAGTTTACTCCTGCCTTCC 60.340 57.143 0.00 0.00 0.00 3.46
251 252 1.630878 CCAGTTTACTCCTGCCTTCCT 59.369 52.381 0.00 0.00 0.00 3.36
252 253 2.616510 CCAGTTTACTCCTGCCTTCCTG 60.617 54.545 0.00 0.00 0.00 3.86
253 254 2.039084 CAGTTTACTCCTGCCTTCCTGT 59.961 50.000 0.00 0.00 0.00 4.00
254 255 2.039084 AGTTTACTCCTGCCTTCCTGTG 59.961 50.000 0.00 0.00 0.00 3.66
255 256 2.024176 TTACTCCTGCCTTCCTGTGA 57.976 50.000 0.00 0.00 0.00 3.58
256 257 2.254152 TACTCCTGCCTTCCTGTGAT 57.746 50.000 0.00 0.00 0.00 3.06
257 258 1.366319 ACTCCTGCCTTCCTGTGATT 58.634 50.000 0.00 0.00 0.00 2.57
258 259 2.551270 ACTCCTGCCTTCCTGTGATTA 58.449 47.619 0.00 0.00 0.00 1.75
259 260 2.912956 ACTCCTGCCTTCCTGTGATTAA 59.087 45.455 0.00 0.00 0.00 1.40
260 261 3.525199 ACTCCTGCCTTCCTGTGATTAAT 59.475 43.478 0.00 0.00 0.00 1.40
261 262 4.018050 ACTCCTGCCTTCCTGTGATTAATT 60.018 41.667 0.00 0.00 0.00 1.40
262 263 4.934356 TCCTGCCTTCCTGTGATTAATTT 58.066 39.130 0.00 0.00 0.00 1.82
263 264 5.332743 TCCTGCCTTCCTGTGATTAATTTT 58.667 37.500 0.00 0.00 0.00 1.82
264 265 5.185635 TCCTGCCTTCCTGTGATTAATTTTG 59.814 40.000 0.00 0.00 0.00 2.44
265 266 4.819769 TGCCTTCCTGTGATTAATTTTGC 58.180 39.130 0.00 0.00 0.00 3.68
266 267 4.527816 TGCCTTCCTGTGATTAATTTTGCT 59.472 37.500 0.00 0.00 0.00 3.91
267 268 5.105063 GCCTTCCTGTGATTAATTTTGCTC 58.895 41.667 0.00 0.00 0.00 4.26
268 269 5.335127 CCTTCCTGTGATTAATTTTGCTCG 58.665 41.667 0.00 0.00 0.00 5.03
269 270 5.106157 CCTTCCTGTGATTAATTTTGCTCGT 60.106 40.000 0.00 0.00 0.00 4.18
270 271 5.957842 TCCTGTGATTAATTTTGCTCGTT 57.042 34.783 0.00 0.00 0.00 3.85
271 272 5.938322 TCCTGTGATTAATTTTGCTCGTTC 58.062 37.500 0.00 0.00 0.00 3.95
272 273 5.471797 TCCTGTGATTAATTTTGCTCGTTCA 59.528 36.000 0.00 0.00 0.00 3.18
273 274 5.796935 CCTGTGATTAATTTTGCTCGTTCAG 59.203 40.000 0.00 0.00 0.00 3.02
274 275 6.312399 TGTGATTAATTTTGCTCGTTCAGT 57.688 33.333 0.00 0.00 0.00 3.41
275 276 6.734137 TGTGATTAATTTTGCTCGTTCAGTT 58.266 32.000 0.00 0.00 0.00 3.16
276 277 7.866729 TGTGATTAATTTTGCTCGTTCAGTTA 58.133 30.769 0.00 0.00 0.00 2.24
277 278 8.511321 TGTGATTAATTTTGCTCGTTCAGTTAT 58.489 29.630 0.00 0.00 0.00 1.89
278 279 9.982291 GTGATTAATTTTGCTCGTTCAGTTATA 57.018 29.630 0.00 0.00 0.00 0.98
310 311 8.133024 TCAATTACCAATTAGGAAAAGCACAT 57.867 30.769 1.54 0.00 41.22 3.21
317 318 6.222389 CAATTAGGAAAAGCACATTCAACCA 58.778 36.000 0.00 0.00 0.00 3.67
369 370 1.168714 CCAGCCTTTAGAACCAGTGC 58.831 55.000 0.00 0.00 0.00 4.40
431 432 4.438346 GCCACGGCGATAGTGATT 57.562 55.556 16.62 0.00 41.83 2.57
434 435 1.268032 GCCACGGCGATAGTGATTTTG 60.268 52.381 16.62 0.00 41.83 2.44
511 513 0.311790 CCAAACTGATGTTGCACGCT 59.688 50.000 0.00 0.00 36.39 5.07
526 528 1.667191 CGCTGTGCAGAAGAGCTGT 60.667 57.895 3.02 0.00 46.62 4.40
569 571 4.321304 CGTAGAAAGAGAGCAAGACAAGGA 60.321 45.833 0.00 0.00 0.00 3.36
571 573 4.640364 AGAAAGAGAGCAAGACAAGGAAG 58.360 43.478 0.00 0.00 0.00 3.46
580 582 4.096984 AGCAAGACAAGGAAGAAACACAAG 59.903 41.667 0.00 0.00 0.00 3.16
586 798 3.778954 AGGAAGAAACACAAGAGGAGG 57.221 47.619 0.00 0.00 0.00 4.30
620 832 8.515473 AGCCGTTGAAAATTATTTTGAACTAC 57.485 30.769 22.84 16.72 42.20 2.73
665 877 4.108699 ACGCATAACCCACATTTTGATG 57.891 40.909 0.00 0.00 0.00 3.07
681 893 6.669125 TTTTGATGATCAAACCTGGTCAAT 57.331 33.333 19.30 0.00 45.79 2.57
694 906 3.875727 CCTGGTCAATGCTGAATGTAGAG 59.124 47.826 0.00 0.00 31.88 2.43
717 929 0.645355 CGTGCGCACCATGTAAGTAG 59.355 55.000 33.23 12.39 0.00 2.57
727 945 2.633481 CCATGTAAGTAGGGAGGGTAGC 59.367 54.545 0.00 0.00 0.00 3.58
762 980 3.363341 TTCCCTTGCACACGATTTTTC 57.637 42.857 0.00 0.00 0.00 2.29
797 1015 9.643693 GAATAAAAACAAGATTGATGGTGATGT 57.356 29.630 0.00 0.00 0.00 3.06
798 1016 8.991243 ATAAAAACAAGATTGATGGTGATGTG 57.009 30.769 0.00 0.00 0.00 3.21
802 1020 3.308035 AGATTGATGGTGATGTGGCAT 57.692 42.857 0.00 0.00 0.00 4.40
821 1039 5.245075 TGGCATCGTATGGTTGACTATATCA 59.755 40.000 0.00 0.00 34.65 2.15
882 1100 1.001815 GTGTTGACATCCCAACCAACG 60.002 52.381 0.00 0.00 44.20 4.10
886 1104 2.705730 TGACATCCCAACCAACGTATG 58.294 47.619 0.00 0.00 0.00 2.39
891 1109 1.086696 CCCAACCAACGTATGCTCAG 58.913 55.000 0.00 0.00 0.00 3.35
916 1135 2.029110 GCAGTACCCAACAATTGCACAT 60.029 45.455 5.05 0.00 29.54 3.21
1220 1445 3.118738 CCTTATACTTCCGACCAGCAAGT 60.119 47.826 0.00 0.00 34.68 3.16
1253 1478 2.025793 TCTCGGAATATGCACCCCAAAA 60.026 45.455 0.00 0.00 0.00 2.44
1256 1481 2.958355 CGGAATATGCACCCCAAAATCT 59.042 45.455 0.00 0.00 0.00 2.40
1313 1539 5.391310 GGTGATTAATGCATGCTAGGAATCG 60.391 44.000 20.33 0.00 0.00 3.34
1344 1570 7.272037 TGGAATACCAGAAAGAAAAGTTCAC 57.728 36.000 0.00 0.00 41.77 3.18
1445 1671 5.827568 TTTCGTACGGTTTGAGATTGTAC 57.172 39.130 16.52 0.00 33.74 2.90
1473 1699 9.224267 GGATGCAGATAACACATCTACAATAAT 57.776 33.333 0.00 0.00 40.06 1.28
1606 1833 2.272146 GGCGATGAGAAAGCCCCA 59.728 61.111 0.00 0.00 44.80 4.96
1655 2113 4.841813 TCCCACCATACTTTGAAGTCTGTA 59.158 41.667 0.00 0.00 40.37 2.74
1656 2114 4.935808 CCCACCATACTTTGAAGTCTGTAC 59.064 45.833 0.00 0.00 40.37 2.90
1658 2116 6.173339 CCACCATACTTTGAAGTCTGTACAT 58.827 40.000 0.00 0.00 40.37 2.29
1692 2212 6.245408 TGTTTAATGCTACATTTGAGGAGGT 58.755 36.000 0.00 0.00 0.00 3.85
1693 2213 6.150976 TGTTTAATGCTACATTTGAGGAGGTG 59.849 38.462 0.00 0.00 0.00 4.00
1694 2214 4.307032 AATGCTACATTTGAGGAGGTGT 57.693 40.909 0.00 0.00 0.00 4.16
1706 2466 4.594970 TGAGGAGGTGTTTGTGAGAAAAA 58.405 39.130 0.00 0.00 0.00 1.94
1725 2485 0.038744 AAAGGGATGTGCCAGTCAGG 59.961 55.000 0.00 0.00 38.95 3.86
1743 2503 3.577389 GCTTGGGAGGCACATACTT 57.423 52.632 0.00 0.00 0.00 2.24
1745 2505 1.065126 GCTTGGGAGGCACATACTTCT 60.065 52.381 0.00 0.00 0.00 2.85
1747 2507 1.204146 TGGGAGGCACATACTTCTCC 58.796 55.000 0.00 0.00 43.65 3.71
1748 2508 0.105039 GGGAGGCACATACTTCTCCG 59.895 60.000 0.00 0.00 44.91 4.63
1749 2509 0.824759 GGAGGCACATACTTCTCCGT 59.175 55.000 0.00 0.00 36.78 4.69
1750 2510 1.471676 GGAGGCACATACTTCTCCGTG 60.472 57.143 0.00 0.00 36.78 4.94
1751 2511 0.537188 AGGCACATACTTCTCCGTGG 59.463 55.000 0.00 0.00 0.00 4.94
1752 2512 0.535335 GGCACATACTTCTCCGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
1753 2513 1.471676 GGCACATACTTCTCCGTGGAG 60.472 57.143 9.73 9.73 43.21 3.86
1763 2523 3.107642 TCTCCGTGGAGAAACTGAAAC 57.892 47.619 16.13 0.00 46.89 2.78
1764 2524 2.698797 TCTCCGTGGAGAAACTGAAACT 59.301 45.455 16.13 0.00 46.89 2.66
1765 2525 2.802816 CTCCGTGGAGAAACTGAAACTG 59.197 50.000 10.50 0.00 44.53 3.16
1767 2527 1.873591 CGTGGAGAAACTGAAACTGGG 59.126 52.381 0.00 0.00 0.00 4.45
1768 2528 2.230660 GTGGAGAAACTGAAACTGGGG 58.769 52.381 0.00 0.00 0.00 4.96
1769 2529 2.131854 TGGAGAAACTGAAACTGGGGA 58.868 47.619 0.00 0.00 0.00 4.81
1770 2530 2.512056 TGGAGAAACTGAAACTGGGGAA 59.488 45.455 0.00 0.00 0.00 3.97
1771 2531 3.140144 TGGAGAAACTGAAACTGGGGAAT 59.860 43.478 0.00 0.00 0.00 3.01
1773 2533 5.015178 TGGAGAAACTGAAACTGGGGAATAT 59.985 40.000 0.00 0.00 0.00 1.28
1774 2534 5.358160 GGAGAAACTGAAACTGGGGAATATG 59.642 44.000 0.00 0.00 0.00 1.78
1775 2535 4.706962 AGAAACTGAAACTGGGGAATATGC 59.293 41.667 0.00 0.00 0.00 3.14
1777 2537 4.046286 ACTGAAACTGGGGAATATGCAA 57.954 40.909 0.00 0.00 0.00 4.08
1779 2539 4.019174 CTGAAACTGGGGAATATGCAAGT 58.981 43.478 0.00 0.00 0.00 3.16
1780 2540 4.016444 TGAAACTGGGGAATATGCAAGTC 58.984 43.478 0.00 0.00 0.00 3.01
1781 2541 4.263905 TGAAACTGGGGAATATGCAAGTCT 60.264 41.667 0.00 0.00 0.00 3.24
1782 2542 3.287867 ACTGGGGAATATGCAAGTCTG 57.712 47.619 0.00 0.00 0.00 3.51
1783 2543 2.578021 ACTGGGGAATATGCAAGTCTGT 59.422 45.455 0.00 0.00 0.00 3.41
1784 2544 3.010584 ACTGGGGAATATGCAAGTCTGTT 59.989 43.478 0.00 0.00 0.00 3.16
1795 2764 4.450976 TGCAAGTCTGTTTTCAAGAGCTA 58.549 39.130 0.00 0.00 0.00 3.32
1824 3284 2.090524 GGTCCACGCTCGGTTAACG 61.091 63.158 0.00 0.00 46.11 3.18
1825 3285 1.372128 GTCCACGCTCGGTTAACGT 60.372 57.895 0.00 0.00 44.69 3.99
1846 3306 4.142469 CGTGAACAAATTAAGGGTCCATCC 60.142 45.833 0.00 0.00 0.00 3.51
1854 3314 1.700042 AAGGGTCCATCCATCGGCTC 61.700 60.000 0.00 0.00 38.11 4.70
1896 3356 6.070767 ACCTCGATCAATTCCTTAAGTCTTCA 60.071 38.462 0.97 0.00 0.00 3.02
1906 3366 8.950208 ATTCCTTAAGTCTTCACATAGCTTAC 57.050 34.615 0.97 0.00 0.00 2.34
2007 4771 7.721842 TCTCATATCTAGGTCATCTCTCGTTTT 59.278 37.037 0.00 0.00 0.00 2.43
2164 4929 0.176219 AACGTCCGGTGACTGAACAA 59.824 50.000 0.00 0.00 39.47 2.83
2179 4944 4.034048 ACTGAACAAGCGTTGTGTTTCTAG 59.966 41.667 4.51 5.68 44.59 2.43
2183 5236 4.051922 ACAAGCGTTGTGTTTCTAGAGAG 58.948 43.478 0.00 0.00 43.48 3.20
2190 5243 5.410132 CGTTGTGTTTCTAGAGAGAGAGAGA 59.590 44.000 0.00 0.00 31.77 3.10
2191 5244 6.402118 CGTTGTGTTTCTAGAGAGAGAGAGAG 60.402 46.154 0.00 0.00 31.77 3.20
2194 5247 5.294552 GTGTTTCTAGAGAGAGAGAGAGAGC 59.705 48.000 0.00 0.00 31.77 4.09
2236 5289 3.131223 TCTCTCGGCTCAGTAATTCTTGG 59.869 47.826 0.00 0.00 0.00 3.61
2316 5525 7.267857 TGATAACCACACATCTGTCTTGATAG 58.732 38.462 0.00 0.00 0.00 2.08
2349 5558 9.529325 TTCGAATAATCTAGAACATGTAACCTG 57.471 33.333 0.00 0.00 0.00 4.00
2409 5618 1.406180 CAAGATGGATTCAATGGCGCA 59.594 47.619 10.83 0.00 0.00 6.09
2456 5668 1.956297 CGGGTGAAGTTACCAACACA 58.044 50.000 0.00 0.00 42.69 3.72
2458 5670 2.225491 CGGGTGAAGTTACCAACACATG 59.775 50.000 0.00 0.00 42.69 3.21
2466 5678 4.385825 AGTTACCAACACATGTGTACCAG 58.614 43.478 30.75 20.49 44.13 4.00
2519 5733 8.578151 AGATAAGTACTTAGCAAGCATAGTACC 58.422 37.037 27.62 13.13 42.35 3.34
2620 5834 1.879380 TGCTTTATTGACGTGCTGCTT 59.121 42.857 0.00 0.00 0.00 3.91
2621 5835 2.293122 TGCTTTATTGACGTGCTGCTTT 59.707 40.909 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.373169 ACAGGAGAGCAGGTTGAATTCA 59.627 45.455 3.38 3.38 0.00 2.57
1 2 3.006247 GACAGGAGAGCAGGTTGAATTC 58.994 50.000 0.00 0.00 0.00 2.17
2 3 2.613977 CGACAGGAGAGCAGGTTGAATT 60.614 50.000 0.00 0.00 0.00 2.17
4 5 0.318441 CGACAGGAGAGCAGGTTGAA 59.682 55.000 0.00 0.00 0.00 2.69
5 6 1.967535 CGACAGGAGAGCAGGTTGA 59.032 57.895 0.00 0.00 0.00 3.18
6 7 1.739562 GCGACAGGAGAGCAGGTTG 60.740 63.158 0.00 0.00 0.00 3.77
7 8 2.659610 GCGACAGGAGAGCAGGTT 59.340 61.111 0.00 0.00 0.00 3.50
8 9 3.386237 GGCGACAGGAGAGCAGGT 61.386 66.667 0.00 0.00 0.00 4.00
9 10 4.504916 CGGCGACAGGAGAGCAGG 62.505 72.222 0.00 0.00 0.00 4.85
13 14 4.056125 TGTGCGGCGACAGGAGAG 62.056 66.667 12.98 0.00 0.00 3.20
14 15 4.357947 GTGTGCGGCGACAGGAGA 62.358 66.667 12.98 0.00 0.00 3.71
25 26 2.507102 CTAGGCTGACCGTGTGCG 60.507 66.667 0.00 0.00 42.76 5.34
26 27 1.945354 TAGCTAGGCTGACCGTGTGC 61.945 60.000 0.00 0.00 40.10 4.57
27 28 0.530744 TTAGCTAGGCTGACCGTGTG 59.469 55.000 0.00 0.00 40.10 3.82
28 29 0.531200 GTTAGCTAGGCTGACCGTGT 59.469 55.000 0.00 0.00 38.89 4.49
29 30 0.818296 AGTTAGCTAGGCTGACCGTG 59.182 55.000 10.12 0.00 44.55 4.94
30 31 2.022934 GTAGTTAGCTAGGCTGACCGT 58.977 52.381 10.12 0.00 44.55 4.83
31 32 1.002684 CGTAGTTAGCTAGGCTGACCG 60.003 57.143 10.12 5.18 44.55 4.79
32 33 2.022934 ACGTAGTTAGCTAGGCTGACC 58.977 52.381 10.12 0.00 44.55 4.02
33 34 3.303001 CGTACGTAGTTAGCTAGGCTGAC 60.303 52.174 7.22 6.37 43.95 3.51
34 35 2.868583 CGTACGTAGTTAGCTAGGCTGA 59.131 50.000 7.22 0.00 37.78 4.26
35 36 2.601741 GCGTACGTAGTTAGCTAGGCTG 60.602 54.545 17.90 0.00 37.78 4.85
36 37 1.601430 GCGTACGTAGTTAGCTAGGCT 59.399 52.381 17.90 0.00 37.78 4.58
37 38 1.334509 GGCGTACGTAGTTAGCTAGGC 60.335 57.143 17.90 0.00 37.78 3.93
38 39 1.942657 TGGCGTACGTAGTTAGCTAGG 59.057 52.381 17.90 4.93 37.78 3.02
39 40 2.601741 GCTGGCGTACGTAGTTAGCTAG 60.602 54.545 17.90 15.96 46.41 3.42
40 41 1.331756 GCTGGCGTACGTAGTTAGCTA 59.668 52.381 17.90 0.00 37.78 3.32
41 42 0.100146 GCTGGCGTACGTAGTTAGCT 59.900 55.000 17.90 0.00 37.78 3.32
42 43 1.198608 CGCTGGCGTACGTAGTTAGC 61.199 60.000 17.90 16.64 45.11 3.09
43 44 0.590732 CCGCTGGCGTACGTAGTTAG 60.591 60.000 17.90 9.16 38.20 2.34
44 45 1.305219 ACCGCTGGCGTACGTAGTTA 61.305 55.000 17.90 0.00 38.20 2.24
45 46 2.180017 CCGCTGGCGTACGTAGTT 59.820 61.111 17.90 0.00 38.20 2.24
46 47 3.044059 GACCGCTGGCGTACGTAGT 62.044 63.158 17.90 5.48 39.95 2.73
47 48 2.277756 GACCGCTGGCGTACGTAG 60.278 66.667 17.90 15.99 37.81 3.51
48 49 2.747460 AGACCGCTGGCGTACGTA 60.747 61.111 17.90 5.67 37.81 3.57
49 50 4.415332 CAGACCGCTGGCGTACGT 62.415 66.667 17.90 4.77 38.51 3.57
50 51 4.415332 ACAGACCGCTGGCGTACG 62.415 66.667 11.84 11.84 46.60 3.67
51 52 2.506438 GACAGACCGCTGGCGTAC 60.506 66.667 13.84 7.27 46.60 3.67
69 70 2.287251 CAGGGAGGAGGTAGGGGG 59.713 72.222 0.00 0.00 0.00 5.40
70 71 1.075151 GTCAGGGAGGAGGTAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
71 72 0.340208 AAGTCAGGGAGGAGGTAGGG 59.660 60.000 0.00 0.00 0.00 3.53
72 73 1.007238 TGAAGTCAGGGAGGAGGTAGG 59.993 57.143 0.00 0.00 0.00 3.18
73 74 2.383855 CTGAAGTCAGGGAGGAGGTAG 58.616 57.143 0.00 0.00 40.20 3.18
74 75 2.534042 CTGAAGTCAGGGAGGAGGTA 57.466 55.000 0.00 0.00 40.20 3.08
75 76 3.390280 CTGAAGTCAGGGAGGAGGT 57.610 57.895 0.00 0.00 40.20 3.85
84 85 2.233431 AGAGCTGTTAGCCTGAAGTCAG 59.767 50.000 0.00 1.05 43.77 3.51
85 86 2.232452 GAGAGCTGTTAGCCTGAAGTCA 59.768 50.000 0.00 0.00 43.77 3.41
86 87 2.495669 AGAGAGCTGTTAGCCTGAAGTC 59.504 50.000 0.00 0.00 43.77 3.01
87 88 2.495669 GAGAGAGCTGTTAGCCTGAAGT 59.504 50.000 0.00 0.00 43.77 3.01
88 89 2.760092 AGAGAGAGCTGTTAGCCTGAAG 59.240 50.000 0.00 0.00 43.77 3.02
89 90 2.813907 AGAGAGAGCTGTTAGCCTGAA 58.186 47.619 0.00 0.00 43.77 3.02
90 91 2.523325 AGAGAGAGCTGTTAGCCTGA 57.477 50.000 0.00 0.00 43.77 3.86
91 92 2.495270 TGAAGAGAGAGCTGTTAGCCTG 59.505 50.000 0.00 0.00 43.77 4.85
92 93 2.813907 TGAAGAGAGAGCTGTTAGCCT 58.186 47.619 0.00 0.00 43.77 4.58
93 94 3.817709 ATGAAGAGAGAGCTGTTAGCC 57.182 47.619 0.00 0.00 43.77 3.93
94 95 5.641209 TGAAAATGAAGAGAGAGCTGTTAGC 59.359 40.000 0.00 0.00 42.84 3.09
95 96 6.873076 ACTGAAAATGAAGAGAGAGCTGTTAG 59.127 38.462 0.00 0.00 0.00 2.34
96 97 6.763355 ACTGAAAATGAAGAGAGAGCTGTTA 58.237 36.000 0.00 0.00 0.00 2.41
97 98 5.619220 ACTGAAAATGAAGAGAGAGCTGTT 58.381 37.500 0.00 0.00 0.00 3.16
98 99 5.226194 ACTGAAAATGAAGAGAGAGCTGT 57.774 39.130 0.00 0.00 0.00 4.40
99 100 5.291614 GCTACTGAAAATGAAGAGAGAGCTG 59.708 44.000 0.00 0.00 0.00 4.24
100 101 5.046735 TGCTACTGAAAATGAAGAGAGAGCT 60.047 40.000 0.00 0.00 0.00 4.09
101 102 5.174395 TGCTACTGAAAATGAAGAGAGAGC 58.826 41.667 0.00 0.00 0.00 4.09
102 103 7.846644 ATTGCTACTGAAAATGAAGAGAGAG 57.153 36.000 0.00 0.00 0.00 3.20
103 104 7.879677 TGAATTGCTACTGAAAATGAAGAGAGA 59.120 33.333 0.00 0.00 0.00 3.10
104 105 7.961827 GTGAATTGCTACTGAAAATGAAGAGAG 59.038 37.037 0.00 0.00 0.00 3.20
105 106 7.360353 CGTGAATTGCTACTGAAAATGAAGAGA 60.360 37.037 0.00 0.00 0.00 3.10
106 107 6.740002 CGTGAATTGCTACTGAAAATGAAGAG 59.260 38.462 0.00 0.00 0.00 2.85
107 108 6.426633 TCGTGAATTGCTACTGAAAATGAAGA 59.573 34.615 0.00 0.00 0.00 2.87
108 109 6.602179 TCGTGAATTGCTACTGAAAATGAAG 58.398 36.000 0.00 0.00 0.00 3.02
109 110 6.552859 TCGTGAATTGCTACTGAAAATGAA 57.447 33.333 0.00 0.00 0.00 2.57
110 111 5.390885 GCTCGTGAATTGCTACTGAAAATGA 60.391 40.000 0.00 0.00 0.00 2.57
111 112 4.790140 GCTCGTGAATTGCTACTGAAAATG 59.210 41.667 0.00 0.00 0.00 2.32
112 113 4.455533 TGCTCGTGAATTGCTACTGAAAAT 59.544 37.500 0.00 0.00 0.00 1.82
113 114 3.812609 TGCTCGTGAATTGCTACTGAAAA 59.187 39.130 0.00 0.00 0.00 2.29
114 115 3.398406 TGCTCGTGAATTGCTACTGAAA 58.602 40.909 0.00 0.00 0.00 2.69
115 116 3.038788 TGCTCGTGAATTGCTACTGAA 57.961 42.857 0.00 0.00 0.00 3.02
116 117 2.741759 TGCTCGTGAATTGCTACTGA 57.258 45.000 0.00 0.00 0.00 3.41
117 118 3.811722 TTTGCTCGTGAATTGCTACTG 57.188 42.857 0.00 0.00 0.00 2.74
118 119 3.058224 GGTTTTGCTCGTGAATTGCTACT 60.058 43.478 0.00 0.00 0.00 2.57
119 120 3.234386 GGTTTTGCTCGTGAATTGCTAC 58.766 45.455 0.00 0.00 0.00 3.58
120 121 2.881513 TGGTTTTGCTCGTGAATTGCTA 59.118 40.909 0.00 0.00 0.00 3.49
121 122 1.680735 TGGTTTTGCTCGTGAATTGCT 59.319 42.857 0.00 0.00 0.00 3.91
122 123 2.053627 CTGGTTTTGCTCGTGAATTGC 58.946 47.619 0.00 0.00 0.00 3.56
123 124 2.053627 GCTGGTTTTGCTCGTGAATTG 58.946 47.619 0.00 0.00 0.00 2.32
124 125 1.956477 AGCTGGTTTTGCTCGTGAATT 59.044 42.857 0.00 0.00 35.67 2.17
125 126 1.267806 CAGCTGGTTTTGCTCGTGAAT 59.732 47.619 5.57 0.00 38.92 2.57
126 127 0.662619 CAGCTGGTTTTGCTCGTGAA 59.337 50.000 5.57 0.00 38.92 3.18
127 128 0.179059 TCAGCTGGTTTTGCTCGTGA 60.179 50.000 15.13 0.00 38.92 4.35
128 129 0.236711 CTCAGCTGGTTTTGCTCGTG 59.763 55.000 15.13 0.00 38.92 4.35
129 130 0.886490 CCTCAGCTGGTTTTGCTCGT 60.886 55.000 15.13 0.00 38.92 4.18
130 131 0.886490 ACCTCAGCTGGTTTTGCTCG 60.886 55.000 15.13 0.00 38.92 5.03
131 132 0.877743 GACCTCAGCTGGTTTTGCTC 59.122 55.000 15.13 0.00 41.00 4.26
132 133 0.183492 TGACCTCAGCTGGTTTTGCT 59.817 50.000 15.13 0.00 41.00 3.91
133 134 0.595095 CTGACCTCAGCTGGTTTTGC 59.405 55.000 15.13 0.00 41.00 3.68
143 144 1.299562 CTTGCAGCTGCTGACCTCAG 61.300 60.000 36.61 17.48 46.40 3.35
144 145 1.302271 CTTGCAGCTGCTGACCTCA 60.302 57.895 36.61 17.61 42.66 3.86
145 146 2.039405 CCTTGCAGCTGCTGACCTC 61.039 63.158 36.61 15.18 42.66 3.85
146 147 2.033757 CCTTGCAGCTGCTGACCT 59.966 61.111 36.61 0.00 42.66 3.85
147 148 3.745803 GCCTTGCAGCTGCTGACC 61.746 66.667 36.61 19.81 42.66 4.02
148 149 2.672307 AGCCTTGCAGCTGCTGAC 60.672 61.111 36.61 23.30 42.95 3.51
149 150 2.359602 GAGCCTTGCAGCTGCTGA 60.360 61.111 36.61 24.36 45.15 4.26
150 151 3.800863 CGAGCCTTGCAGCTGCTG 61.801 66.667 36.61 27.60 45.15 4.41
151 152 4.326507 ACGAGCCTTGCAGCTGCT 62.327 61.111 36.61 18.73 45.15 4.24
152 153 3.797546 GACGAGCCTTGCAGCTGC 61.798 66.667 31.89 31.89 45.15 5.25
153 154 3.123620 GGACGAGCCTTGCAGCTG 61.124 66.667 10.11 10.11 45.15 4.24
155 156 2.042831 ATTGGACGAGCCTTGCAGC 61.043 57.895 0.00 0.00 37.63 5.25
156 157 1.651240 CCATTGGACGAGCCTTGCAG 61.651 60.000 0.00 0.00 37.63 4.41
157 158 1.675310 CCATTGGACGAGCCTTGCA 60.675 57.895 0.00 0.00 37.63 4.08
158 159 1.675641 ACCATTGGACGAGCCTTGC 60.676 57.895 10.37 0.00 37.63 4.01
159 160 1.926511 GCACCATTGGACGAGCCTTG 61.927 60.000 10.37 0.00 37.63 3.61
160 161 1.675641 GCACCATTGGACGAGCCTT 60.676 57.895 10.37 0.00 37.63 4.35
161 162 2.045926 GCACCATTGGACGAGCCT 60.046 61.111 10.37 0.00 37.63 4.58
162 163 3.499737 CGCACCATTGGACGAGCC 61.500 66.667 10.37 0.00 37.10 4.70
163 164 1.970917 CTTCGCACCATTGGACGAGC 61.971 60.000 19.47 12.41 36.57 5.03
164 165 1.970917 GCTTCGCACCATTGGACGAG 61.971 60.000 19.47 15.78 36.57 4.18
165 166 2.032634 GCTTCGCACCATTGGACGA 61.033 57.895 17.49 17.49 34.40 4.20
166 167 1.851021 TTGCTTCGCACCATTGGACG 61.851 55.000 10.37 12.68 38.71 4.79
167 168 0.109597 CTTGCTTCGCACCATTGGAC 60.110 55.000 10.37 0.00 38.71 4.02
168 169 0.537143 ACTTGCTTCGCACCATTGGA 60.537 50.000 10.37 0.00 38.71 3.53
169 170 0.109597 GACTTGCTTCGCACCATTGG 60.110 55.000 0.00 0.00 38.71 3.16
170 171 0.453282 CGACTTGCTTCGCACCATTG 60.453 55.000 0.00 0.00 38.71 2.82
171 172 0.602638 TCGACTTGCTTCGCACCATT 60.603 50.000 0.00 0.00 38.71 3.16
172 173 0.391661 ATCGACTTGCTTCGCACCAT 60.392 50.000 0.00 0.00 38.71 3.55
173 174 1.005037 ATCGACTTGCTTCGCACCA 60.005 52.632 0.00 0.00 38.71 4.17
174 175 1.291877 ACATCGACTTGCTTCGCACC 61.292 55.000 0.00 0.00 38.71 5.01
175 176 0.093705 GACATCGACTTGCTTCGCAC 59.906 55.000 0.00 0.00 38.71 5.34
176 177 1.344226 CGACATCGACTTGCTTCGCA 61.344 55.000 0.00 0.00 43.02 5.10
177 178 1.341802 CGACATCGACTTGCTTCGC 59.658 57.895 0.00 0.00 43.02 4.70
178 179 0.635731 GACGACATCGACTTGCTTCG 59.364 55.000 8.54 0.00 43.02 3.79
189 190 2.579787 CCTGACCGCGACGACATC 60.580 66.667 8.23 0.00 0.00 3.06
190 191 4.796231 GCCTGACCGCGACGACAT 62.796 66.667 8.23 0.00 0.00 3.06
193 194 4.287781 TTTGCCTGACCGCGACGA 62.288 61.111 8.23 0.00 0.00 4.20
194 195 3.777925 CTTTGCCTGACCGCGACG 61.778 66.667 8.23 0.00 0.00 5.12
195 196 3.423154 CCTTTGCCTGACCGCGAC 61.423 66.667 8.23 1.20 0.00 5.19
196 197 3.936203 ACCTTTGCCTGACCGCGA 61.936 61.111 8.23 0.00 0.00 5.87
197 198 3.726517 CACCTTTGCCTGACCGCG 61.727 66.667 0.00 0.00 0.00 6.46
198 199 2.281484 TCACCTTTGCCTGACCGC 60.281 61.111 0.00 0.00 0.00 5.68
199 200 1.071471 ACTCACCTTTGCCTGACCG 59.929 57.895 0.00 0.00 0.00 4.79
200 201 0.108585 TCACTCACCTTTGCCTGACC 59.891 55.000 0.00 0.00 0.00 4.02
201 202 1.202698 ACTCACTCACCTTTGCCTGAC 60.203 52.381 0.00 0.00 0.00 3.51
202 203 1.070758 GACTCACTCACCTTTGCCTGA 59.929 52.381 0.00 0.00 0.00 3.86
203 204 1.202687 TGACTCACTCACCTTTGCCTG 60.203 52.381 0.00 0.00 0.00 4.85
204 205 1.131638 TGACTCACTCACCTTTGCCT 58.868 50.000 0.00 0.00 0.00 4.75
205 206 2.079925 GATGACTCACTCACCTTTGCC 58.920 52.381 0.00 0.00 0.00 4.52
206 207 2.771089 TGATGACTCACTCACCTTTGC 58.229 47.619 0.00 0.00 0.00 3.68
207 208 3.499918 GGTTGATGACTCACTCACCTTTG 59.500 47.826 0.00 0.00 30.29 2.77
208 209 3.496870 GGGTTGATGACTCACTCACCTTT 60.497 47.826 3.46 0.00 32.55 3.11
209 210 2.039084 GGGTTGATGACTCACTCACCTT 59.961 50.000 3.46 0.00 32.55 3.50
210 211 1.625818 GGGTTGATGACTCACTCACCT 59.374 52.381 3.46 0.00 32.55 4.00
211 212 1.339151 GGGGTTGATGACTCACTCACC 60.339 57.143 0.00 0.00 31.57 4.02
212 213 1.339151 GGGGGTTGATGACTCACTCAC 60.339 57.143 0.00 0.00 0.00 3.51
213 214 0.984230 GGGGGTTGATGACTCACTCA 59.016 55.000 0.00 0.00 0.00 3.41
214 215 0.984230 TGGGGGTTGATGACTCACTC 59.016 55.000 0.00 0.00 31.45 3.51
215 216 0.987294 CTGGGGGTTGATGACTCACT 59.013 55.000 0.00 0.00 31.45 3.41
216 217 0.693049 ACTGGGGGTTGATGACTCAC 59.307 55.000 0.00 0.00 30.48 3.51
217 218 1.444933 AACTGGGGGTTGATGACTCA 58.555 50.000 0.00 0.00 36.70 3.41
218 219 2.586648 AAACTGGGGGTTGATGACTC 57.413 50.000 0.00 0.00 38.29 3.36
219 220 2.986728 AGTAAACTGGGGGTTGATGACT 59.013 45.455 0.00 0.00 38.29 3.41
220 221 3.344515 GAGTAAACTGGGGGTTGATGAC 58.655 50.000 0.00 0.00 38.29 3.06
221 222 2.307686 GGAGTAAACTGGGGGTTGATGA 59.692 50.000 0.00 0.00 38.29 2.92
222 223 2.308866 AGGAGTAAACTGGGGGTTGATG 59.691 50.000 0.00 0.00 38.29 3.07
223 224 2.308866 CAGGAGTAAACTGGGGGTTGAT 59.691 50.000 0.00 0.00 38.29 2.57
224 225 1.702957 CAGGAGTAAACTGGGGGTTGA 59.297 52.381 0.00 0.00 38.29 3.18
225 226 1.886655 GCAGGAGTAAACTGGGGGTTG 60.887 57.143 0.00 0.00 38.29 3.77
226 227 0.404426 GCAGGAGTAAACTGGGGGTT 59.596 55.000 0.00 0.00 40.28 4.11
227 228 1.498176 GGCAGGAGTAAACTGGGGGT 61.498 60.000 0.00 0.00 36.48 4.95
228 229 1.208165 AGGCAGGAGTAAACTGGGGG 61.208 60.000 0.00 0.00 36.48 5.40
229 230 0.698818 AAGGCAGGAGTAAACTGGGG 59.301 55.000 0.00 0.00 36.48 4.96
230 231 1.340114 GGAAGGCAGGAGTAAACTGGG 60.340 57.143 0.00 0.00 36.48 4.45
231 232 1.630878 AGGAAGGCAGGAGTAAACTGG 59.369 52.381 0.00 0.00 36.48 4.00
232 233 2.039084 ACAGGAAGGCAGGAGTAAACTG 59.961 50.000 0.00 0.00 38.95 3.16
233 234 2.039084 CACAGGAAGGCAGGAGTAAACT 59.961 50.000 0.00 0.00 0.00 2.66
234 235 2.038557 TCACAGGAAGGCAGGAGTAAAC 59.961 50.000 0.00 0.00 0.00 2.01
235 236 2.334977 TCACAGGAAGGCAGGAGTAAA 58.665 47.619 0.00 0.00 0.00 2.01
236 237 2.024176 TCACAGGAAGGCAGGAGTAA 57.976 50.000 0.00 0.00 0.00 2.24
237 238 2.254152 ATCACAGGAAGGCAGGAGTA 57.746 50.000 0.00 0.00 0.00 2.59
238 239 1.366319 AATCACAGGAAGGCAGGAGT 58.634 50.000 0.00 0.00 0.00 3.85
239 240 3.634397 TTAATCACAGGAAGGCAGGAG 57.366 47.619 0.00 0.00 0.00 3.69
240 241 4.591321 AATTAATCACAGGAAGGCAGGA 57.409 40.909 0.00 0.00 0.00 3.86
241 242 5.413499 CAAAATTAATCACAGGAAGGCAGG 58.587 41.667 0.00 0.00 0.00 4.85
242 243 4.866486 GCAAAATTAATCACAGGAAGGCAG 59.134 41.667 0.00 0.00 0.00 4.85
243 244 4.527816 AGCAAAATTAATCACAGGAAGGCA 59.472 37.500 0.00 0.00 0.00 4.75
244 245 5.077134 AGCAAAATTAATCACAGGAAGGC 57.923 39.130 0.00 0.00 0.00 4.35
245 246 5.106157 ACGAGCAAAATTAATCACAGGAAGG 60.106 40.000 0.00 0.00 0.00 3.46
246 247 5.942872 ACGAGCAAAATTAATCACAGGAAG 58.057 37.500 0.00 0.00 0.00 3.46
247 248 5.957842 ACGAGCAAAATTAATCACAGGAA 57.042 34.783 0.00 0.00 0.00 3.36
248 249 5.471797 TGAACGAGCAAAATTAATCACAGGA 59.528 36.000 0.00 0.00 0.00 3.86
249 250 5.698832 TGAACGAGCAAAATTAATCACAGG 58.301 37.500 0.00 0.00 0.00 4.00
250 251 6.373779 ACTGAACGAGCAAAATTAATCACAG 58.626 36.000 0.00 0.00 0.00 3.66
251 252 6.312399 ACTGAACGAGCAAAATTAATCACA 57.688 33.333 0.00 0.00 0.00 3.58
252 253 8.895932 ATAACTGAACGAGCAAAATTAATCAC 57.104 30.769 0.00 0.00 0.00 3.06
261 262 9.594478 TGATTAATCTATAACTGAACGAGCAAA 57.406 29.630 16.24 0.00 0.00 3.68
262 263 9.594478 TTGATTAATCTATAACTGAACGAGCAA 57.406 29.630 16.24 0.00 0.00 3.91
263 264 9.764363 ATTGATTAATCTATAACTGAACGAGCA 57.236 29.630 16.24 0.00 0.00 4.26
299 300 3.319122 AGAGTGGTTGAATGTGCTTTTCC 59.681 43.478 0.00 0.00 0.00 3.13
378 379 4.376413 CGAAAACAATCTTGGAGAGTGACG 60.376 45.833 11.77 7.97 42.41 4.35
384 385 7.876068 ACTGTTATACGAAAACAATCTTGGAGA 59.124 33.333 0.00 0.00 36.46 3.71
434 435 2.798976 TGTTGGATTGCAACTTCAGC 57.201 45.000 19.80 3.39 33.97 4.26
511 513 5.522456 CAAATTAAACAGCTCTTCTGCACA 58.478 37.500 0.00 0.00 46.76 4.57
517 519 6.920210 GGGATATGCAAATTAAACAGCTCTTC 59.080 38.462 0.00 0.00 0.00 2.87
526 528 2.294791 CGCCCGGGATATGCAAATTAAA 59.705 45.455 29.31 0.00 0.00 1.52
569 571 5.373812 TTCTTCCTCCTCTTGTGTTTCTT 57.626 39.130 0.00 0.00 0.00 2.52
571 573 7.574030 GCTTAATTCTTCCTCCTCTTGTGTTTC 60.574 40.741 0.00 0.00 0.00 2.78
580 582 3.545366 ACGGCTTAATTCTTCCTCCTC 57.455 47.619 0.00 0.00 0.00 3.71
665 877 3.084039 TCAGCATTGACCAGGTTTGATC 58.916 45.455 0.00 0.00 0.00 2.92
681 893 3.706698 GCACGTATCTCTACATTCAGCA 58.293 45.455 0.00 0.00 0.00 4.41
694 906 1.257936 CTTACATGGTGCGCACGTATC 59.742 52.381 32.35 19.74 0.00 2.24
797 1015 5.245075 TGATATAGTCAACCATACGATGCCA 59.755 40.000 0.00 0.00 32.78 4.92
798 1016 5.720202 TGATATAGTCAACCATACGATGCC 58.280 41.667 0.00 0.00 32.78 4.40
848 1066 7.161404 GGATGTCAACACTAGGCATCATATTA 58.839 38.462 9.60 0.00 38.06 0.98
852 1070 3.434167 GGGATGTCAACACTAGGCATCAT 60.434 47.826 9.60 0.00 38.06 2.45
859 1077 3.417069 TGGTTGGGATGTCAACACTAG 57.583 47.619 9.47 0.00 46.29 2.57
882 1100 3.134458 GGGTACTGCATTCTGAGCATAC 58.866 50.000 0.00 0.00 41.82 2.39
886 1104 1.740025 GTTGGGTACTGCATTCTGAGC 59.260 52.381 0.00 0.00 0.00 4.26
891 1109 3.253230 GCAATTGTTGGGTACTGCATTC 58.747 45.455 7.40 0.00 0.00 2.67
941 1160 1.076533 ACTTATCAACGAGTGCGCCG 61.077 55.000 4.18 3.44 42.48 6.46
1344 1570 8.298854 TGACATAGTTTTCATTGTCAATCTTGG 58.701 33.333 2.35 0.00 43.88 3.61
1408 1634 5.955496 CCGTACGAAATACTTCAAAAATCCG 59.045 40.000 18.76 0.00 0.00 4.18
1445 1671 3.117491 AGATGTGTTATCTGCATCCCG 57.883 47.619 0.00 0.00 39.66 5.14
1606 1833 6.095440 TGCTTTCTTCTTACAAAGTTTGCTCT 59.905 34.615 15.59 0.00 32.96 4.09
1665 2185 9.071276 CCTCCTCAAATGTAGCATTAAACATAT 57.929 33.333 0.00 0.00 35.30 1.78
1677 2197 5.063204 TCACAAACACCTCCTCAAATGTAG 58.937 41.667 0.00 0.00 0.00 2.74
1706 2466 0.038744 CCTGACTGGCACATCCCTTT 59.961 55.000 0.00 0.00 38.20 3.11
1708 2468 3.408229 CCTGACTGGCACATCCCT 58.592 61.111 0.00 0.00 38.20 4.20
1719 2479 2.530151 TGCCTCCCAAGCCTGACT 60.530 61.111 0.00 0.00 0.00 3.41
1720 2480 2.360475 GTGCCTCCCAAGCCTGAC 60.360 66.667 0.00 0.00 0.00 3.51
1725 2485 1.065126 AGAAGTATGTGCCTCCCAAGC 60.065 52.381 0.00 0.00 0.00 4.01
1729 2489 0.105039 CGGAGAAGTATGTGCCTCCC 59.895 60.000 0.00 0.00 41.54 4.30
1730 2490 0.824759 ACGGAGAAGTATGTGCCTCC 59.175 55.000 0.00 0.00 41.25 4.30
1745 2505 2.484770 CCAGTTTCAGTTTCTCCACGGA 60.485 50.000 0.00 0.00 0.00 4.69
1747 2507 1.873591 CCCAGTTTCAGTTTCTCCACG 59.126 52.381 0.00 0.00 0.00 4.94
1748 2508 2.158667 TCCCCAGTTTCAGTTTCTCCAC 60.159 50.000 0.00 0.00 0.00 4.02
1749 2509 2.131854 TCCCCAGTTTCAGTTTCTCCA 58.868 47.619 0.00 0.00 0.00 3.86
1750 2510 2.951229 TCCCCAGTTTCAGTTTCTCC 57.049 50.000 0.00 0.00 0.00 3.71
1751 2511 5.163612 GCATATTCCCCAGTTTCAGTTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
1752 2512 4.706962 GCATATTCCCCAGTTTCAGTTTCT 59.293 41.667 0.00 0.00 0.00 2.52
1753 2513 4.462483 TGCATATTCCCCAGTTTCAGTTTC 59.538 41.667 0.00 0.00 0.00 2.78
1754 2514 4.415596 TGCATATTCCCCAGTTTCAGTTT 58.584 39.130 0.00 0.00 0.00 2.66
1755 2515 4.046286 TGCATATTCCCCAGTTTCAGTT 57.954 40.909 0.00 0.00 0.00 3.16
1757 2517 4.019174 ACTTGCATATTCCCCAGTTTCAG 58.981 43.478 0.00 0.00 0.00 3.02
1758 2518 4.016444 GACTTGCATATTCCCCAGTTTCA 58.984 43.478 0.00 0.00 0.00 2.69
1759 2519 4.096984 CAGACTTGCATATTCCCCAGTTTC 59.903 45.833 0.00 0.00 0.00 2.78
1761 2521 3.010584 ACAGACTTGCATATTCCCCAGTT 59.989 43.478 0.00 0.00 0.00 3.16
1762 2522 2.578021 ACAGACTTGCATATTCCCCAGT 59.422 45.455 0.00 0.00 0.00 4.00
1763 2523 3.287867 ACAGACTTGCATATTCCCCAG 57.712 47.619 0.00 0.00 0.00 4.45
1764 2524 3.737559 AACAGACTTGCATATTCCCCA 57.262 42.857 0.00 0.00 0.00 4.96
1765 2525 4.462483 TGAAAACAGACTTGCATATTCCCC 59.538 41.667 0.00 0.00 0.00 4.81
1767 2527 6.913170 TCTTGAAAACAGACTTGCATATTCC 58.087 36.000 0.00 0.00 0.00 3.01
1768 2528 6.525976 GCTCTTGAAAACAGACTTGCATATTC 59.474 38.462 0.00 0.00 0.00 1.75
1769 2529 6.208204 AGCTCTTGAAAACAGACTTGCATATT 59.792 34.615 0.00 0.00 0.00 1.28
1770 2530 5.709164 AGCTCTTGAAAACAGACTTGCATAT 59.291 36.000 0.00 0.00 0.00 1.78
1771 2531 5.065914 AGCTCTTGAAAACAGACTTGCATA 58.934 37.500 0.00 0.00 0.00 3.14
1773 2533 3.282021 AGCTCTTGAAAACAGACTTGCA 58.718 40.909 0.00 0.00 0.00 4.08
1774 2534 3.978718 AGCTCTTGAAAACAGACTTGC 57.021 42.857 0.00 0.00 0.00 4.01
1775 2535 5.525378 ACACTAGCTCTTGAAAACAGACTTG 59.475 40.000 0.00 0.00 0.00 3.16
1777 2537 5.283457 ACACTAGCTCTTGAAAACAGACT 57.717 39.130 0.00 0.00 0.00 3.24
1779 2539 4.100963 TGGACACTAGCTCTTGAAAACAGA 59.899 41.667 0.00 0.00 0.00 3.41
1780 2540 4.380531 TGGACACTAGCTCTTGAAAACAG 58.619 43.478 0.00 0.00 0.00 3.16
1781 2541 4.380531 CTGGACACTAGCTCTTGAAAACA 58.619 43.478 0.00 0.00 0.00 2.83
1782 2542 3.187432 GCTGGACACTAGCTCTTGAAAAC 59.813 47.826 0.00 0.00 38.14 2.43
1783 2543 3.403038 GCTGGACACTAGCTCTTGAAAA 58.597 45.455 0.00 0.00 38.14 2.29
1784 2544 3.045601 GCTGGACACTAGCTCTTGAAA 57.954 47.619 0.00 0.00 38.14 2.69
1795 2764 2.872388 CGTGGACCAGCTGGACACT 61.872 63.158 37.52 22.99 41.13 3.55
1805 3265 1.005867 GTTAACCGAGCGTGGACCA 60.006 57.895 4.14 0.00 0.00 4.02
1824 3284 4.770010 TGGATGGACCCTTAATTTGTTCAC 59.230 41.667 0.00 0.00 38.00 3.18
1825 3285 5.004361 TGGATGGACCCTTAATTTGTTCA 57.996 39.130 0.00 0.00 38.00 3.18
1846 3306 2.651135 ATCGATCTGATGAGCCGATG 57.349 50.000 10.11 0.00 39.05 3.84
1906 3366 1.448985 TGGCCAAACTTAGCTAAGCG 58.551 50.000 29.39 18.94 36.79 4.68
1952 3421 1.269309 GGATCGATCGAGGTCCAACTG 60.269 57.143 25.84 0.00 0.00 3.16
2007 4771 2.493278 TCAAGATCTGACAGACATCGCA 59.507 45.455 7.47 0.00 0.00 5.10
2164 4929 3.821600 TCTCTCTCTAGAAACACAACGCT 59.178 43.478 0.00 0.00 0.00 5.07
2179 4944 1.064060 GTTGCGCTCTCTCTCTCTCTC 59.936 57.143 9.73 0.00 0.00 3.20
2183 5236 1.991965 CAAAGTTGCGCTCTCTCTCTC 59.008 52.381 9.73 0.00 0.00 3.20
2236 5289 1.819632 GCACATGGGACGATGGGTC 60.820 63.158 0.00 0.00 45.31 4.46
2276 5483 6.550481 TGTGGTTATCATATACTACGACCCAA 59.450 38.462 0.00 0.00 0.00 4.12
2349 5558 6.296803 TCCCTAAACTTCAGGTTTCTCTTTC 58.703 40.000 0.00 0.00 43.87 2.62
2409 5618 5.852282 AAAAAGGTGTTGCTGACTAATGT 57.148 34.783 0.00 0.00 0.00 2.71
2490 5704 9.968870 ACTATGCTTGCTAAGTACTTATCTAAC 57.031 33.333 15.57 5.30 0.00 2.34
2519 5733 6.590677 TGCATGTGGACAATCAAACAATAATG 59.409 34.615 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.