Multiple sequence alignment - TraesCS7D01G547500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G547500 chr7D 100.000 2624 0 0 1 2624 633530477 633533100 0.000000e+00 4846
1 TraesCS7D01G547500 chr7D 98.523 474 7 0 1 474 64985448 64985921 0.000000e+00 837
2 TraesCS7D01G547500 chr7B 92.597 1756 61 23 476 2206 749547653 749549364 0.000000e+00 2459
3 TraesCS7D01G547500 chr7B 96.014 276 8 2 2350 2624 749549790 749550063 1.850000e-121 446
4 TraesCS7D01G547500 chr7B 81.273 534 92 7 1073 1602 748459133 748458604 2.410000e-115 425
5 TraesCS7D01G547500 chr7B 93.151 146 7 1 2207 2352 749549587 749549729 7.360000e-51 211
6 TraesCS7D01G547500 chr7A 87.020 1379 97 39 875 2206 733531047 733529704 0.000000e+00 1480
7 TraesCS7D01G547500 chr7A 90.594 404 24 2 478 877 733531497 733531104 8.320000e-145 523
8 TraesCS7D01G547500 chr7A 90.667 150 10 4 2207 2352 733529675 733529526 2.060000e-46 196
9 TraesCS7D01G547500 chr7A 94.792 96 4 1 2354 2448 733529462 733529367 5.850000e-32 148
10 TraesCS7D01G547500 chr5D 98.734 474 6 0 1 474 542463268 542463741 0.000000e+00 843
11 TraesCS7D01G547500 chr5D 97.468 474 12 0 1 474 469439478 469439951 0.000000e+00 809
12 TraesCS7D01G547500 chr5D 96.835 474 14 1 1 474 550606809 550606337 0.000000e+00 791
13 TraesCS7D01G547500 chr2D 98.101 474 9 0 1 474 118036171 118036644 0.000000e+00 826
14 TraesCS7D01G547500 chr3D 98.101 474 8 1 1 474 430365188 430365660 0.000000e+00 824
15 TraesCS7D01G547500 chr3D 96.624 474 16 0 1 474 582570441 582569968 0.000000e+00 787
16 TraesCS7D01G547500 chr6D 97.474 475 11 1 1 474 19377302 19376828 0.000000e+00 809
17 TraesCS7D01G547500 chr3B 96.624 474 16 0 1 474 723658154 723658627 0.000000e+00 787


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G547500 chr7D 633530477 633533100 2623 False 4846.000000 4846 100.000000 1 2624 1 chr7D.!!$F2 2623
1 TraesCS7D01G547500 chr7B 749547653 749550063 2410 False 1038.666667 2459 93.920667 476 2624 3 chr7B.!!$F1 2148
2 TraesCS7D01G547500 chr7B 748458604 748459133 529 True 425.000000 425 81.273000 1073 1602 1 chr7B.!!$R1 529
3 TraesCS7D01G547500 chr7A 733529367 733531497 2130 True 586.750000 1480 90.768250 478 2448 4 chr7A.!!$R1 1970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 467 0.041238 TGGACGGGGAGAAGATCACT 59.959 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2356 2717 0.178953 ATGTTGGCTCAACCCAAGCT 60.179 50.0 13.35 0.0 45.03 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.287977 ACTCCACTTGTTTAAGGGCC 57.712 50.000 0.00 0.00 35.94 5.80
21 22 1.203013 ACTCCACTTGTTTAAGGGCCC 60.203 52.381 16.46 16.46 35.94 5.80
22 23 1.075536 CTCCACTTGTTTAAGGGCCCT 59.924 52.381 22.28 22.28 35.94 5.19
23 24 2.307686 CTCCACTTGTTTAAGGGCCCTA 59.692 50.000 28.96 7.70 35.94 3.53
24 25 2.717515 TCCACTTGTTTAAGGGCCCTAA 59.282 45.455 28.96 14.94 35.94 2.69
25 26 2.823747 CCACTTGTTTAAGGGCCCTAAC 59.176 50.000 28.96 26.61 35.94 2.34
26 27 2.823747 CACTTGTTTAAGGGCCCTAACC 59.176 50.000 28.96 14.22 38.26 2.85
27 28 2.089201 CTTGTTTAAGGGCCCTAACCG 58.911 52.381 28.96 15.95 0.00 4.44
28 29 1.360185 TGTTTAAGGGCCCTAACCGA 58.640 50.000 28.96 9.11 0.00 4.69
29 30 1.917568 TGTTTAAGGGCCCTAACCGAT 59.082 47.619 28.96 11.34 0.00 4.18
30 31 3.113824 TGTTTAAGGGCCCTAACCGATA 58.886 45.455 28.96 10.08 0.00 2.92
31 32 3.522750 TGTTTAAGGGCCCTAACCGATAA 59.477 43.478 28.96 16.33 0.00 1.75
32 33 4.132336 GTTTAAGGGCCCTAACCGATAAG 58.868 47.826 28.96 0.00 0.00 1.73
33 34 1.889174 AAGGGCCCTAACCGATAAGT 58.111 50.000 28.96 0.88 0.00 2.24
34 35 1.421480 AGGGCCCTAACCGATAAGTC 58.579 55.000 27.42 0.00 0.00 3.01
35 36 1.062352 AGGGCCCTAACCGATAAGTCT 60.062 52.381 27.42 0.00 0.00 3.24
36 37 2.178544 AGGGCCCTAACCGATAAGTCTA 59.821 50.000 27.42 0.00 0.00 2.59
37 38 3.171528 GGGCCCTAACCGATAAGTCTAT 58.828 50.000 17.04 0.00 0.00 1.98
38 39 3.195182 GGGCCCTAACCGATAAGTCTATC 59.805 52.174 17.04 0.00 0.00 2.08
39 40 4.087907 GGCCCTAACCGATAAGTCTATCT 58.912 47.826 0.00 0.00 33.03 1.98
40 41 4.158209 GGCCCTAACCGATAAGTCTATCTC 59.842 50.000 0.00 0.00 33.03 2.75
41 42 5.011586 GCCCTAACCGATAAGTCTATCTCT 58.988 45.833 0.00 0.00 33.03 3.10
42 43 5.477637 GCCCTAACCGATAAGTCTATCTCTT 59.522 44.000 0.00 0.00 33.03 2.85
43 44 6.015265 GCCCTAACCGATAAGTCTATCTCTTT 60.015 42.308 0.00 0.00 33.03 2.52
44 45 7.595604 CCCTAACCGATAAGTCTATCTCTTTC 58.404 42.308 0.00 0.00 33.03 2.62
45 46 7.449086 CCCTAACCGATAAGTCTATCTCTTTCT 59.551 40.741 0.00 0.00 33.03 2.52
46 47 8.508875 CCTAACCGATAAGTCTATCTCTTTCTC 58.491 40.741 0.00 0.00 33.03 2.87
47 48 7.883391 AACCGATAAGTCTATCTCTTTCTCA 57.117 36.000 0.00 0.00 33.03 3.27
48 49 8.472007 AACCGATAAGTCTATCTCTTTCTCAT 57.528 34.615 0.00 0.00 33.03 2.90
49 50 8.472007 ACCGATAAGTCTATCTCTTTCTCATT 57.528 34.615 0.00 0.00 33.03 2.57
50 51 9.575868 ACCGATAAGTCTATCTCTTTCTCATTA 57.424 33.333 0.00 0.00 33.03 1.90
51 52 9.834628 CCGATAAGTCTATCTCTTTCTCATTAC 57.165 37.037 0.00 0.00 33.03 1.89
52 53 9.536558 CGATAAGTCTATCTCTTTCTCATTACG 57.463 37.037 0.00 0.00 33.03 3.18
55 56 7.266922 AGTCTATCTCTTTCTCATTACGTCC 57.733 40.000 0.00 0.00 0.00 4.79
56 57 7.057894 AGTCTATCTCTTTCTCATTACGTCCT 58.942 38.462 0.00 0.00 0.00 3.85
57 58 8.212312 AGTCTATCTCTTTCTCATTACGTCCTA 58.788 37.037 0.00 0.00 0.00 2.94
58 59 8.500773 GTCTATCTCTTTCTCATTACGTCCTAG 58.499 40.741 0.00 0.00 0.00 3.02
59 60 8.212312 TCTATCTCTTTCTCATTACGTCCTAGT 58.788 37.037 0.00 0.00 0.00 2.57
60 61 6.438259 TCTCTTTCTCATTACGTCCTAGTG 57.562 41.667 0.00 0.00 0.00 2.74
61 62 6.178324 TCTCTTTCTCATTACGTCCTAGTGA 58.822 40.000 0.00 0.00 0.00 3.41
62 63 6.093771 TCTCTTTCTCATTACGTCCTAGTGAC 59.906 42.308 0.00 2.28 40.81 3.67
63 64 5.708697 TCTTTCTCATTACGTCCTAGTGACA 59.291 40.000 0.00 0.00 44.71 3.58
64 65 4.959596 TCTCATTACGTCCTAGTGACAC 57.040 45.455 0.00 0.00 44.71 3.67
65 66 4.586884 TCTCATTACGTCCTAGTGACACT 58.413 43.478 13.68 13.68 44.71 3.55
66 67 4.634883 TCTCATTACGTCCTAGTGACACTC 59.365 45.833 12.39 0.00 44.71 3.51
67 68 3.693085 TCATTACGTCCTAGTGACACTCC 59.307 47.826 12.39 0.00 44.71 3.85
68 69 2.865119 TACGTCCTAGTGACACTCCA 57.135 50.000 12.39 0.00 44.71 3.86
69 70 1.991121 ACGTCCTAGTGACACTCCAA 58.009 50.000 12.39 0.00 44.71 3.53
70 71 1.887198 ACGTCCTAGTGACACTCCAAG 59.113 52.381 12.39 4.04 44.71 3.61
71 72 1.887198 CGTCCTAGTGACACTCCAAGT 59.113 52.381 12.39 0.00 44.71 3.16
72 73 2.095161 CGTCCTAGTGACACTCCAAGTC 60.095 54.545 12.39 0.00 44.71 3.01
73 74 3.158676 GTCCTAGTGACACTCCAAGTCT 58.841 50.000 12.39 0.00 43.85 3.24
74 75 4.333690 GTCCTAGTGACACTCCAAGTCTA 58.666 47.826 12.39 0.00 43.85 2.59
75 76 4.396790 GTCCTAGTGACACTCCAAGTCTAG 59.603 50.000 12.39 0.93 43.85 2.43
76 77 4.043059 TCCTAGTGACACTCCAAGTCTAGT 59.957 45.833 12.39 0.00 36.94 2.57
77 78 4.156922 CCTAGTGACACTCCAAGTCTAGTG 59.843 50.000 12.39 0.00 46.84 2.74
78 79 3.833732 AGTGACACTCCAAGTCTAGTGA 58.166 45.455 1.07 0.00 44.79 3.41
79 80 4.411927 AGTGACACTCCAAGTCTAGTGAT 58.588 43.478 1.07 0.00 44.79 3.06
80 81 5.571285 AGTGACACTCCAAGTCTAGTGATA 58.429 41.667 1.07 0.00 44.79 2.15
81 82 6.191315 AGTGACACTCCAAGTCTAGTGATAT 58.809 40.000 1.07 0.00 44.79 1.63
82 83 6.665680 AGTGACACTCCAAGTCTAGTGATATT 59.334 38.462 1.07 0.00 44.79 1.28
83 84 7.179338 AGTGACACTCCAAGTCTAGTGATATTT 59.821 37.037 1.07 0.00 44.79 1.40
84 85 7.276658 GTGACACTCCAAGTCTAGTGATATTTG 59.723 40.741 9.30 0.00 44.79 2.32
85 86 7.178451 TGACACTCCAAGTCTAGTGATATTTGA 59.822 37.037 9.30 0.00 44.79 2.69
86 87 7.907389 ACACTCCAAGTCTAGTGATATTTGAA 58.093 34.615 9.30 0.00 44.79 2.69
87 88 8.037758 ACACTCCAAGTCTAGTGATATTTGAAG 58.962 37.037 9.30 0.00 44.79 3.02
88 89 8.253810 CACTCCAAGTCTAGTGATATTTGAAGA 58.746 37.037 0.00 0.00 44.79 2.87
89 90 8.986991 ACTCCAAGTCTAGTGATATTTGAAGAT 58.013 33.333 0.00 0.00 0.00 2.40
126 127 8.679288 ATCAAAAGACATAAAAGATTTGCGAG 57.321 30.769 0.00 0.00 0.00 5.03
127 128 7.870826 TCAAAAGACATAAAAGATTTGCGAGA 58.129 30.769 0.00 0.00 0.00 4.04
128 129 8.017373 TCAAAAGACATAAAAGATTTGCGAGAG 58.983 33.333 0.00 0.00 0.00 3.20
129 130 6.428385 AAGACATAAAAGATTTGCGAGAGG 57.572 37.500 0.00 0.00 0.00 3.69
130 131 4.878397 AGACATAAAAGATTTGCGAGAGGG 59.122 41.667 0.00 0.00 0.00 4.30
131 132 4.589908 ACATAAAAGATTTGCGAGAGGGT 58.410 39.130 0.00 0.00 0.00 4.34
132 133 4.396166 ACATAAAAGATTTGCGAGAGGGTG 59.604 41.667 0.00 0.00 0.00 4.61
133 134 2.568623 AAAGATTTGCGAGAGGGTGT 57.431 45.000 0.00 0.00 0.00 4.16
134 135 3.695830 AAAGATTTGCGAGAGGGTGTA 57.304 42.857 0.00 0.00 0.00 2.90
135 136 2.674796 AGATTTGCGAGAGGGTGTAC 57.325 50.000 0.00 0.00 0.00 2.90
136 137 1.207329 AGATTTGCGAGAGGGTGTACC 59.793 52.381 0.00 0.00 40.67 3.34
146 147 3.413522 GGGTGTACCTTCGAAGTCG 57.586 57.895 23.03 11.69 37.15 4.18
155 156 2.430244 TCGAAGTCGAGGTTGCGC 60.430 61.111 0.00 0.00 44.22 6.09
156 157 2.733218 CGAAGTCGAGGTTGCGCA 60.733 61.111 5.66 5.66 43.02 6.09
157 158 2.853914 GAAGTCGAGGTTGCGCAC 59.146 61.111 11.12 5.37 0.00 5.34
158 159 1.954146 GAAGTCGAGGTTGCGCACA 60.954 57.895 11.12 0.00 0.00 4.57
159 160 1.891060 GAAGTCGAGGTTGCGCACAG 61.891 60.000 11.12 0.00 0.00 3.66
171 172 4.735132 GCACAGCCGTCCTACGCA 62.735 66.667 0.00 0.00 40.91 5.24
172 173 2.184322 CACAGCCGTCCTACGCAT 59.816 61.111 0.00 0.00 40.91 4.73
173 174 2.167219 CACAGCCGTCCTACGCATG 61.167 63.158 0.00 0.00 40.91 4.06
174 175 2.586079 CAGCCGTCCTACGCATGG 60.586 66.667 0.00 0.00 40.91 3.66
175 176 4.530857 AGCCGTCCTACGCATGGC 62.531 66.667 0.00 0.00 45.18 4.40
177 178 3.849951 CCGTCCTACGCATGGCCT 61.850 66.667 3.32 0.00 40.91 5.19
178 179 2.186903 CGTCCTACGCATGGCCTT 59.813 61.111 3.32 0.00 33.65 4.35
179 180 1.883084 CGTCCTACGCATGGCCTTC 60.883 63.158 3.32 0.00 33.65 3.46
180 181 1.220749 GTCCTACGCATGGCCTTCA 59.779 57.895 3.32 0.00 0.00 3.02
181 182 1.090052 GTCCTACGCATGGCCTTCAC 61.090 60.000 3.32 0.00 0.00 3.18
182 183 1.819632 CCTACGCATGGCCTTCACC 60.820 63.158 3.32 0.00 0.00 4.02
183 184 1.078497 CTACGCATGGCCTTCACCA 60.078 57.895 3.32 0.00 45.82 4.17
191 192 1.204146 TGGCCTTCACCATAGAGTCC 58.796 55.000 3.32 0.00 33.75 3.85
192 193 1.273838 TGGCCTTCACCATAGAGTCCT 60.274 52.381 3.32 0.00 33.75 3.85
193 194 1.414550 GGCCTTCACCATAGAGTCCTC 59.585 57.143 0.00 0.00 0.00 3.71
194 195 1.067821 GCCTTCACCATAGAGTCCTCG 59.932 57.143 0.00 0.00 34.09 4.63
195 196 2.379972 CCTTCACCATAGAGTCCTCGT 58.620 52.381 0.00 0.00 34.09 4.18
196 197 2.359531 CCTTCACCATAGAGTCCTCGTC 59.640 54.545 0.00 0.00 34.09 4.20
197 198 1.664873 TCACCATAGAGTCCTCGTCG 58.335 55.000 0.00 0.00 34.09 5.12
198 199 0.663688 CACCATAGAGTCCTCGTCGG 59.336 60.000 0.00 0.00 34.09 4.79
199 200 0.255318 ACCATAGAGTCCTCGTCGGT 59.745 55.000 0.00 0.52 34.09 4.69
200 201 0.663688 CCATAGAGTCCTCGTCGGTG 59.336 60.000 0.00 0.00 34.09 4.94
201 202 0.663688 CATAGAGTCCTCGTCGGTGG 59.336 60.000 0.00 0.00 34.09 4.61
202 203 1.102222 ATAGAGTCCTCGTCGGTGGC 61.102 60.000 0.00 0.00 34.09 5.01
203 204 2.194388 TAGAGTCCTCGTCGGTGGCT 62.194 60.000 0.00 0.00 34.09 4.75
204 205 3.343788 GAGTCCTCGTCGGTGGCTG 62.344 68.421 0.00 0.00 0.00 4.85
208 209 4.056125 CTCGTCGGTGGCTGCTGA 62.056 66.667 0.00 0.00 0.00 4.26
209 210 3.573772 CTCGTCGGTGGCTGCTGAA 62.574 63.158 0.00 0.00 0.00 3.02
210 211 3.414700 CGTCGGTGGCTGCTGAAC 61.415 66.667 0.00 0.00 0.00 3.18
211 212 3.050275 GTCGGTGGCTGCTGAACC 61.050 66.667 0.00 4.68 0.00 3.62
214 215 3.050275 GGTGGCTGCTGAACCGTC 61.050 66.667 0.00 0.00 0.00 4.79
215 216 2.280797 GTGGCTGCTGAACCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
222 223 3.362262 CTGAACCGTCAGTCCCGA 58.638 61.111 0.00 0.00 45.44 5.14
223 224 1.080705 CTGAACCGTCAGTCCCGAC 60.081 63.158 0.00 0.00 45.44 4.79
231 232 1.905449 GTCAGTCCCGACGTAATGAC 58.095 55.000 10.80 10.80 36.20 3.06
240 241 3.925238 CGTAATGACGCCCGCTGC 61.925 66.667 0.00 0.00 43.21 5.25
258 259 2.511145 GCCTCAGCAGCGAAGGAG 60.511 66.667 17.72 9.22 39.53 3.69
259 260 2.977178 CCTCAGCAGCGAAGGAGT 59.023 61.111 9.90 0.00 0.00 3.85
260 261 1.949847 GCCTCAGCAGCGAAGGAGTA 61.950 60.000 17.72 0.00 39.53 2.59
261 262 0.532573 CCTCAGCAGCGAAGGAGTAA 59.467 55.000 9.90 0.00 0.00 2.24
262 263 1.137872 CCTCAGCAGCGAAGGAGTAAT 59.862 52.381 9.90 0.00 0.00 1.89
263 264 2.362397 CCTCAGCAGCGAAGGAGTAATA 59.638 50.000 9.90 0.00 0.00 0.98
264 265 3.006323 CCTCAGCAGCGAAGGAGTAATAT 59.994 47.826 9.90 0.00 0.00 1.28
265 266 4.233789 CTCAGCAGCGAAGGAGTAATATC 58.766 47.826 0.00 0.00 0.00 1.63
266 267 2.983136 CAGCAGCGAAGGAGTAATATCG 59.017 50.000 0.00 0.00 38.28 2.92
267 268 2.029828 AGCAGCGAAGGAGTAATATCGG 60.030 50.000 0.00 0.00 35.91 4.18
268 269 2.030185 GCAGCGAAGGAGTAATATCGGA 60.030 50.000 0.00 0.00 35.91 4.55
269 270 3.566523 CAGCGAAGGAGTAATATCGGAC 58.433 50.000 0.00 0.00 35.91 4.79
270 271 3.004419 CAGCGAAGGAGTAATATCGGACA 59.996 47.826 0.00 0.00 35.91 4.02
271 272 3.004524 AGCGAAGGAGTAATATCGGACAC 59.995 47.826 0.00 0.00 35.91 3.67
272 273 3.004524 GCGAAGGAGTAATATCGGACACT 59.995 47.826 0.00 0.00 35.91 3.55
273 274 4.537965 CGAAGGAGTAATATCGGACACTG 58.462 47.826 0.00 0.00 0.00 3.66
274 275 4.275196 CGAAGGAGTAATATCGGACACTGA 59.725 45.833 0.00 0.00 0.00 3.41
275 276 5.561145 CGAAGGAGTAATATCGGACACTGAG 60.561 48.000 0.00 0.00 0.00 3.35
276 277 3.570550 AGGAGTAATATCGGACACTGAGC 59.429 47.826 0.00 0.00 0.00 4.26
277 278 3.305471 GGAGTAATATCGGACACTGAGCC 60.305 52.174 0.00 0.00 0.00 4.70
278 279 3.567397 AGTAATATCGGACACTGAGCCT 58.433 45.455 0.00 0.00 0.00 4.58
279 280 2.898729 AATATCGGACACTGAGCCTG 57.101 50.000 0.00 0.00 0.00 4.85
280 281 1.781786 ATATCGGACACTGAGCCTGT 58.218 50.000 0.00 0.00 0.00 4.00
281 282 1.103803 TATCGGACACTGAGCCTGTC 58.896 55.000 0.00 0.00 37.84 3.51
284 285 2.262915 GACACTGAGCCTGTCCCG 59.737 66.667 0.00 0.00 33.23 5.14
285 286 2.203640 ACACTGAGCCTGTCCCGA 60.204 61.111 0.00 0.00 0.00 5.14
286 287 2.262915 CACTGAGCCTGTCCCGAC 59.737 66.667 0.00 0.00 0.00 4.79
287 288 3.374402 ACTGAGCCTGTCCCGACG 61.374 66.667 0.00 0.00 0.00 5.12
288 289 3.062466 CTGAGCCTGTCCCGACGA 61.062 66.667 0.00 0.00 0.00 4.20
289 290 3.343788 CTGAGCCTGTCCCGACGAC 62.344 68.421 0.00 0.00 42.33 4.34
290 291 3.063084 GAGCCTGTCCCGACGACT 61.063 66.667 0.00 0.00 42.49 4.18
291 292 3.053849 GAGCCTGTCCCGACGACTC 62.054 68.421 0.00 0.00 42.49 3.36
292 293 4.131088 GCCTGTCCCGACGACTCC 62.131 72.222 0.00 0.00 42.49 3.85
293 294 3.812019 CCTGTCCCGACGACTCCG 61.812 72.222 0.00 0.00 42.49 4.63
294 295 2.745100 CTGTCCCGACGACTCCGA 60.745 66.667 0.00 0.00 42.49 4.55
295 296 2.745100 TGTCCCGACGACTCCGAG 60.745 66.667 0.00 0.00 42.49 4.63
296 297 2.435586 GTCCCGACGACTCCGAGA 60.436 66.667 1.33 0.00 38.57 4.04
297 298 2.125229 TCCCGACGACTCCGAGAG 60.125 66.667 1.33 0.00 39.50 3.20
309 310 4.544001 CGAGAGGCGGAGTAGACT 57.456 61.111 0.00 0.00 36.03 3.24
310 311 2.018544 CGAGAGGCGGAGTAGACTG 58.981 63.158 0.00 0.00 36.03 3.51
311 312 0.745128 CGAGAGGCGGAGTAGACTGT 60.745 60.000 0.00 0.00 36.03 3.55
312 313 1.465794 GAGAGGCGGAGTAGACTGTT 58.534 55.000 0.00 0.00 0.00 3.16
313 314 1.133407 GAGAGGCGGAGTAGACTGTTG 59.867 57.143 0.00 0.00 0.00 3.33
314 315 0.889306 GAGGCGGAGTAGACTGTTGT 59.111 55.000 0.00 0.00 0.00 3.32
315 316 0.603569 AGGCGGAGTAGACTGTTGTG 59.396 55.000 0.00 0.00 0.00 3.33
316 317 0.389948 GGCGGAGTAGACTGTTGTGG 60.390 60.000 0.00 0.00 0.00 4.17
317 318 0.317479 GCGGAGTAGACTGTTGTGGT 59.683 55.000 0.00 0.00 0.00 4.16
318 319 1.935300 GCGGAGTAGACTGTTGTGGTG 60.935 57.143 0.00 0.00 0.00 4.17
319 320 1.336887 CGGAGTAGACTGTTGTGGTGG 60.337 57.143 0.00 0.00 0.00 4.61
320 321 1.692519 GGAGTAGACTGTTGTGGTGGT 59.307 52.381 0.00 0.00 0.00 4.16
321 322 2.548067 GGAGTAGACTGTTGTGGTGGTG 60.548 54.545 0.00 0.00 0.00 4.17
322 323 2.364324 GAGTAGACTGTTGTGGTGGTGA 59.636 50.000 0.00 0.00 0.00 4.02
323 324 2.769663 AGTAGACTGTTGTGGTGGTGAA 59.230 45.455 0.00 0.00 0.00 3.18
324 325 2.332063 AGACTGTTGTGGTGGTGAAG 57.668 50.000 0.00 0.00 0.00 3.02
325 326 1.837439 AGACTGTTGTGGTGGTGAAGA 59.163 47.619 0.00 0.00 0.00 2.87
326 327 2.238646 AGACTGTTGTGGTGGTGAAGAA 59.761 45.455 0.00 0.00 0.00 2.52
327 328 2.614057 GACTGTTGTGGTGGTGAAGAAG 59.386 50.000 0.00 0.00 0.00 2.85
328 329 2.238646 ACTGTTGTGGTGGTGAAGAAGA 59.761 45.455 0.00 0.00 0.00 2.87
329 330 3.278574 CTGTTGTGGTGGTGAAGAAGAA 58.721 45.455 0.00 0.00 0.00 2.52
330 331 3.278574 TGTTGTGGTGGTGAAGAAGAAG 58.721 45.455 0.00 0.00 0.00 2.85
331 332 3.054728 TGTTGTGGTGGTGAAGAAGAAGA 60.055 43.478 0.00 0.00 0.00 2.87
332 333 4.137543 GTTGTGGTGGTGAAGAAGAAGAT 58.862 43.478 0.00 0.00 0.00 2.40
333 334 4.008074 TGTGGTGGTGAAGAAGAAGATC 57.992 45.455 0.00 0.00 0.00 2.75
334 335 2.996621 GTGGTGGTGAAGAAGAAGATCG 59.003 50.000 0.00 0.00 0.00 3.69
335 336 2.003301 GGTGGTGAAGAAGAAGATCGC 58.997 52.381 0.00 0.00 0.00 4.58
336 337 2.612972 GGTGGTGAAGAAGAAGATCGCA 60.613 50.000 0.00 0.00 0.00 5.10
337 338 3.067106 GTGGTGAAGAAGAAGATCGCAA 58.933 45.455 0.00 0.00 0.00 4.85
338 339 3.124297 GTGGTGAAGAAGAAGATCGCAAG 59.876 47.826 0.00 0.00 0.00 4.01
339 340 2.675348 GGTGAAGAAGAAGATCGCAAGG 59.325 50.000 0.00 0.00 38.47 3.61
340 341 2.675348 GTGAAGAAGAAGATCGCAAGGG 59.325 50.000 0.00 0.00 38.47 3.95
341 342 1.668237 GAAGAAGAAGATCGCAAGGGC 59.332 52.381 0.00 0.00 38.47 5.19
342 343 0.908198 AGAAGAAGATCGCAAGGGCT 59.092 50.000 0.00 0.00 38.10 5.19
343 344 1.012841 GAAGAAGATCGCAAGGGCTG 58.987 55.000 0.00 0.00 38.10 4.85
358 359 3.219224 CTGCTCCTCAGCCTCCTC 58.781 66.667 0.00 0.00 46.26 3.71
359 360 2.757508 TGCTCCTCAGCCTCCTCG 60.758 66.667 0.00 0.00 46.26 4.63
360 361 3.535962 GCTCCTCAGCCTCCTCGG 61.536 72.222 0.00 0.00 40.14 4.63
361 362 2.837291 CTCCTCAGCCTCCTCGGG 60.837 72.222 0.00 0.00 0.00 5.14
362 363 3.347590 TCCTCAGCCTCCTCGGGA 61.348 66.667 0.00 0.00 0.00 5.14
363 364 3.151022 CCTCAGCCTCCTCGGGAC 61.151 72.222 0.00 0.00 0.00 4.46
364 365 3.151022 CTCAGCCTCCTCGGGACC 61.151 72.222 0.00 0.00 0.00 4.46
369 370 3.148279 CCTCCTCGGGACCGGAAG 61.148 72.222 9.46 1.64 40.25 3.46
370 371 3.839432 CTCCTCGGGACCGGAAGC 61.839 72.222 9.46 0.00 40.25 3.86
395 396 3.706373 CCCCTGGTGACGGAGGTG 61.706 72.222 0.00 0.00 39.98 4.00
396 397 2.923035 CCCTGGTGACGGAGGTGT 60.923 66.667 0.00 0.00 39.98 4.16
397 398 1.608336 CCCTGGTGACGGAGGTGTA 60.608 63.158 0.00 0.00 39.98 2.90
398 399 1.605058 CCCTGGTGACGGAGGTGTAG 61.605 65.000 0.00 0.00 39.98 2.74
399 400 0.611062 CCTGGTGACGGAGGTGTAGA 60.611 60.000 0.00 0.00 39.98 2.59
400 401 1.475403 CTGGTGACGGAGGTGTAGAT 58.525 55.000 0.00 0.00 39.98 1.98
401 402 1.135139 CTGGTGACGGAGGTGTAGATG 59.865 57.143 0.00 0.00 39.98 2.90
402 403 1.272258 TGGTGACGGAGGTGTAGATGA 60.272 52.381 0.00 0.00 0.00 2.92
403 404 2.032620 GGTGACGGAGGTGTAGATGAT 58.967 52.381 0.00 0.00 0.00 2.45
404 405 3.220110 GGTGACGGAGGTGTAGATGATA 58.780 50.000 0.00 0.00 0.00 2.15
405 406 3.635373 GGTGACGGAGGTGTAGATGATAA 59.365 47.826 0.00 0.00 0.00 1.75
406 407 4.499357 GGTGACGGAGGTGTAGATGATAAC 60.499 50.000 0.00 0.00 0.00 1.89
407 408 3.314357 TGACGGAGGTGTAGATGATAACG 59.686 47.826 0.00 0.00 0.00 3.18
408 409 2.034305 ACGGAGGTGTAGATGATAACGC 59.966 50.000 0.00 0.00 0.00 4.84
409 410 2.662700 GGAGGTGTAGATGATAACGCG 58.337 52.381 3.53 3.53 0.00 6.01
410 411 2.052157 GAGGTGTAGATGATAACGCGC 58.948 52.381 5.73 0.00 0.00 6.86
411 412 0.776451 GGTGTAGATGATAACGCGCG 59.224 55.000 30.96 30.96 0.00 6.86
412 413 0.776451 GTGTAGATGATAACGCGCGG 59.224 55.000 35.22 16.31 0.00 6.46
413 414 0.664224 TGTAGATGATAACGCGCGGA 59.336 50.000 35.22 22.16 0.00 5.54
414 415 1.328439 GTAGATGATAACGCGCGGAG 58.672 55.000 35.22 7.05 0.00 4.63
415 416 0.949397 TAGATGATAACGCGCGGAGT 59.051 50.000 35.22 20.79 0.00 3.85
416 417 0.102481 AGATGATAACGCGCGGAGTT 59.898 50.000 35.22 21.58 35.75 3.01
417 418 0.503117 GATGATAACGCGCGGAGTTC 59.497 55.000 35.22 23.30 33.42 3.01
418 419 0.874607 ATGATAACGCGCGGAGTTCC 60.875 55.000 35.22 17.34 33.42 3.62
428 429 4.785453 GGAGTTCCGCCCTGGCAG 62.785 72.222 7.75 7.75 42.06 4.85
429 430 3.706373 GAGTTCCGCCCTGGCAGA 61.706 66.667 17.94 0.00 42.06 4.26
430 431 3.959991 GAGTTCCGCCCTGGCAGAC 62.960 68.421 17.94 6.76 42.06 3.51
431 432 4.021925 GTTCCGCCCTGGCAGACT 62.022 66.667 17.94 0.00 42.06 3.24
432 433 3.706373 TTCCGCCCTGGCAGACTC 61.706 66.667 17.94 3.28 42.06 3.36
435 436 4.463879 CGCCCTGGCAGACTCCTG 62.464 72.222 17.94 0.00 43.22 3.86
436 437 4.106925 GCCCTGGCAGACTCCTGG 62.107 72.222 17.94 8.54 42.81 4.45
442 443 3.303189 GCAGACTCCTGGCTAGCA 58.697 61.111 18.24 1.68 40.72 3.49
443 444 1.153469 GCAGACTCCTGGCTAGCAC 60.153 63.158 18.24 6.66 40.72 4.40
444 445 1.140589 CAGACTCCTGGCTAGCACG 59.859 63.158 18.24 6.28 36.77 5.34
445 446 1.000771 AGACTCCTGGCTAGCACGA 60.001 57.895 18.24 7.24 0.00 4.35
446 447 0.612174 AGACTCCTGGCTAGCACGAA 60.612 55.000 18.24 0.00 0.00 3.85
447 448 0.461961 GACTCCTGGCTAGCACGAAT 59.538 55.000 18.24 0.00 0.00 3.34
448 449 0.176680 ACTCCTGGCTAGCACGAATG 59.823 55.000 18.24 4.29 0.00 2.67
449 450 0.531532 CTCCTGGCTAGCACGAATGG 60.532 60.000 18.24 8.58 0.00 3.16
450 451 0.975556 TCCTGGCTAGCACGAATGGA 60.976 55.000 18.24 10.72 0.00 3.41
451 452 0.811616 CCTGGCTAGCACGAATGGAC 60.812 60.000 18.24 0.00 0.00 4.02
452 453 1.148157 CTGGCTAGCACGAATGGACG 61.148 60.000 18.24 0.00 39.31 4.79
453 454 1.883084 GGCTAGCACGAATGGACGG 60.883 63.158 18.24 0.00 37.61 4.79
454 455 1.883084 GCTAGCACGAATGGACGGG 60.883 63.158 10.63 0.00 39.86 5.28
455 456 1.227263 CTAGCACGAATGGACGGGG 60.227 63.158 0.00 0.00 37.15 5.73
456 457 1.672854 CTAGCACGAATGGACGGGGA 61.673 60.000 0.00 0.00 37.15 4.81
457 458 1.672854 TAGCACGAATGGACGGGGAG 61.673 60.000 0.00 0.00 37.15 4.30
458 459 3.014085 GCACGAATGGACGGGGAGA 62.014 63.158 0.00 0.00 37.15 3.71
459 460 1.594833 CACGAATGGACGGGGAGAA 59.405 57.895 0.00 0.00 37.61 2.87
460 461 0.460284 CACGAATGGACGGGGAGAAG 60.460 60.000 0.00 0.00 37.61 2.85
461 462 0.613853 ACGAATGGACGGGGAGAAGA 60.614 55.000 0.00 0.00 37.61 2.87
462 463 0.753262 CGAATGGACGGGGAGAAGAT 59.247 55.000 0.00 0.00 0.00 2.40
463 464 1.269831 CGAATGGACGGGGAGAAGATC 60.270 57.143 0.00 0.00 0.00 2.75
464 465 1.762957 GAATGGACGGGGAGAAGATCA 59.237 52.381 0.00 0.00 0.00 2.92
465 466 1.123928 ATGGACGGGGAGAAGATCAC 58.876 55.000 0.00 0.00 0.00 3.06
466 467 0.041238 TGGACGGGGAGAAGATCACT 59.959 55.000 0.00 0.00 0.00 3.41
467 468 0.747852 GGACGGGGAGAAGATCACTC 59.252 60.000 10.25 10.25 0.00 3.51
472 473 2.903404 GGAGAAGATCACTCCCCGT 58.097 57.895 21.09 0.00 45.64 5.28
473 474 0.747852 GGAGAAGATCACTCCCCGTC 59.252 60.000 21.09 3.68 45.64 4.79
474 475 0.747852 GAGAAGATCACTCCCCGTCC 59.252 60.000 8.22 0.00 0.00 4.79
514 519 7.488792 GTCAATTGTCATGTTATATTTGCTGCA 59.511 33.333 5.13 0.00 0.00 4.41
520 525 7.863877 TGTCATGTTATATTTGCTGCATGATTC 59.136 33.333 1.84 0.00 42.68 2.52
536 541 6.091437 GCATGATTCTCTGCTTATTTATGCC 58.909 40.000 0.00 0.00 35.49 4.40
564 569 2.311124 AAATACGGCTTAGCTCGCTT 57.689 45.000 13.30 6.41 0.00 4.68
615 620 5.400485 CAGTTTTTCAGCACAGTCATAAAGC 59.600 40.000 0.00 0.00 0.00 3.51
672 677 3.871006 ACATCCTATGCAATGTGTGTACG 59.129 43.478 0.96 0.00 34.88 3.67
688 693 6.152154 TGTGTGTACGGATCGATATTGGATAT 59.848 38.462 0.00 0.00 0.00 1.63
689 694 7.033791 GTGTGTACGGATCGATATTGGATATT 58.966 38.462 0.00 0.00 0.00 1.28
690 695 7.220300 GTGTGTACGGATCGATATTGGATATTC 59.780 40.741 0.00 0.00 0.00 1.75
691 696 7.094118 TGTGTACGGATCGATATTGGATATTCA 60.094 37.037 0.00 0.00 0.00 2.57
692 697 7.921214 GTGTACGGATCGATATTGGATATTCAT 59.079 37.037 0.00 0.00 0.00 2.57
693 698 7.920682 TGTACGGATCGATATTGGATATTCATG 59.079 37.037 0.00 0.00 0.00 3.07
694 699 6.878317 ACGGATCGATATTGGATATTCATGT 58.122 36.000 0.00 0.00 0.00 3.21
695 700 7.331026 ACGGATCGATATTGGATATTCATGTT 58.669 34.615 0.00 0.00 0.00 2.71
696 701 8.474831 ACGGATCGATATTGGATATTCATGTTA 58.525 33.333 0.00 0.00 0.00 2.41
697 702 9.481340 CGGATCGATATTGGATATTCATGTTAT 57.519 33.333 0.00 0.00 0.00 1.89
817 834 0.876777 TTGACGACGCAACCGATGTT 60.877 50.000 0.00 0.00 38.29 2.71
822 839 0.165944 GACGCAACCGATGTTCAAGG 59.834 55.000 0.00 0.00 38.29 3.61
866 883 4.911610 CGCATGCAATAAGCCAATAACTAC 59.088 41.667 19.57 0.00 44.83 2.73
873 949 7.929785 TGCAATAAGCCAATAACTACTACTACC 59.070 37.037 0.00 0.00 44.83 3.18
898 978 1.134521 GTATCATGTGGCTTCACCGGA 60.135 52.381 9.46 0.00 43.94 5.14
899 979 0.392998 ATCATGTGGCTTCACCGGAC 60.393 55.000 9.46 0.00 43.94 4.79
900 980 2.047274 ATGTGGCTTCACCGGACG 60.047 61.111 9.46 0.00 43.94 4.79
901 981 3.605749 ATGTGGCTTCACCGGACGG 62.606 63.158 9.46 9.56 43.94 4.79
905 985 2.508663 GCTTCACCGGACGGCTAC 60.509 66.667 9.46 0.00 39.32 3.58
954 1047 0.601311 CAATGAGCTACCGGGCTAGC 60.601 60.000 14.66 14.66 43.20 3.42
965 1060 1.574428 GGGCTAGCAAACACACACG 59.426 57.895 18.24 0.00 0.00 4.49
966 1061 1.574428 GGCTAGCAAACACACACGG 59.426 57.895 18.24 0.00 0.00 4.94
967 1062 1.574428 GCTAGCAAACACACACGGG 59.426 57.895 10.63 0.00 0.00 5.28
969 1064 0.884704 CTAGCAAACACACACGGGCT 60.885 55.000 0.00 0.00 35.50 5.19
970 1065 0.393448 TAGCAAACACACACGGGCTA 59.607 50.000 0.00 0.00 33.10 3.93
976 1073 1.815421 CACACACGGGCTAGCATCC 60.815 63.158 18.24 8.58 0.00 3.51
986 1083 2.808543 GGGCTAGCATCCGAAATTACAG 59.191 50.000 18.24 0.00 0.00 2.74
1059 1156 2.965147 GCACACGCCGCTCATCAAA 61.965 57.895 0.00 0.00 0.00 2.69
1299 1396 1.518572 CGGCAAGCTGTACTACGGG 60.519 63.158 0.00 0.00 0.00 5.28
1461 1558 0.537143 TCTTGGCAATGGCGTTGACT 60.537 50.000 24.81 0.00 46.56 3.41
1729 1833 4.908601 TGATAGACCACTGGATGTGTTT 57.091 40.909 0.71 0.00 44.81 2.83
1730 1834 4.578871 TGATAGACCACTGGATGTGTTTG 58.421 43.478 0.71 0.00 44.81 2.93
1731 1835 4.285775 TGATAGACCACTGGATGTGTTTGA 59.714 41.667 0.71 0.00 44.81 2.69
1733 1837 2.439507 AGACCACTGGATGTGTTTGACT 59.560 45.455 0.71 0.00 44.81 3.41
1734 1838 3.117888 AGACCACTGGATGTGTTTGACTT 60.118 43.478 0.71 0.00 44.81 3.01
1735 1839 3.631250 ACCACTGGATGTGTTTGACTTT 58.369 40.909 0.71 0.00 44.81 2.66
1736 1840 4.023291 ACCACTGGATGTGTTTGACTTTT 58.977 39.130 0.71 0.00 44.81 2.27
1825 1932 2.436646 CCCTCTTGCGCAACGGAT 60.437 61.111 26.97 0.00 0.00 4.18
1896 2026 4.149090 AGGAGAGAGAAGGTTTTAGGGT 57.851 45.455 0.00 0.00 0.00 4.34
1935 2065 6.883756 TGCCATAACTGATGATGTAAAACTGA 59.116 34.615 0.00 0.00 37.82 3.41
1967 2097 5.514500 AACTGGCCTTCTCCAAGTATTAA 57.486 39.130 3.32 0.00 35.36 1.40
1996 2126 1.811965 CGCATGTGATGGAAGAAACCA 59.188 47.619 0.00 0.00 44.41 3.67
2000 2130 3.140325 TGTGATGGAAGAAACCAGGAC 57.860 47.619 0.00 0.00 43.49 3.85
2012 2142 2.598787 CCAGGACCCGCCCTAAACA 61.599 63.158 0.00 0.00 37.37 2.83
2181 2313 6.039941 TGTGCATCATCATGATCAAAGCAATA 59.960 34.615 17.92 10.78 35.03 1.90
2229 2583 7.905604 TGATTCAAACGAACTCATCTACAAT 57.094 32.000 0.00 0.00 0.00 2.71
2251 2605 9.693739 ACAATACAATACTTCCCATTACAATCA 57.306 29.630 0.00 0.00 0.00 2.57
2256 2610 7.888021 ACAATACTTCCCATTACAATCAACTCA 59.112 33.333 0.00 0.00 0.00 3.41
2322 2683 3.181490 GGCTTTTCTTCGAACACCTTGTT 60.181 43.478 0.00 0.00 44.37 2.83
2352 2713 2.037251 GGATAATTCCGACAGGCTGCTA 59.963 50.000 15.89 0.00 37.47 3.49
2353 2714 2.890808 TAATTCCGACAGGCTGCTAG 57.109 50.000 15.89 5.93 37.47 3.42
2354 2715 0.179000 AATTCCGACAGGCTGCTAGG 59.821 55.000 15.89 15.27 37.47 3.02
2355 2716 1.690219 ATTCCGACAGGCTGCTAGGG 61.690 60.000 15.89 10.72 37.47 3.53
2356 2717 2.759973 CCGACAGGCTGCTAGGGA 60.760 66.667 15.89 0.00 0.00 4.20
2481 2906 1.866237 CAAATGTCGTCCACGTGGG 59.134 57.895 33.40 19.06 40.80 4.61
2597 3022 2.938838 AGGTAGAGGATGGAGTTCGAG 58.061 52.381 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.594131 GGCCCTTAAACAAGTGGAGTT 58.406 47.619 0.00 0.00 0.00 3.01
1 2 1.203013 GGGCCCTTAAACAAGTGGAGT 60.203 52.381 17.04 0.00 0.00 3.85
2 3 1.075536 AGGGCCCTTAAACAAGTGGAG 59.924 52.381 22.28 0.00 0.00 3.86
3 4 1.154430 AGGGCCCTTAAACAAGTGGA 58.846 50.000 22.28 0.00 0.00 4.02
4 5 2.823747 GTTAGGGCCCTTAAACAAGTGG 59.176 50.000 34.04 0.00 0.00 4.00
5 6 2.823747 GGTTAGGGCCCTTAAACAAGTG 59.176 50.000 34.04 0.00 0.00 3.16
6 7 2.553685 CGGTTAGGGCCCTTAAACAAGT 60.554 50.000 34.04 4.18 0.00 3.16
7 8 2.089201 CGGTTAGGGCCCTTAAACAAG 58.911 52.381 34.04 21.30 0.00 3.16
8 9 1.704070 TCGGTTAGGGCCCTTAAACAA 59.296 47.619 34.04 15.79 0.00 2.83
9 10 1.360185 TCGGTTAGGGCCCTTAAACA 58.640 50.000 34.04 8.83 0.00 2.83
10 11 2.723322 ATCGGTTAGGGCCCTTAAAC 57.277 50.000 34.04 28.14 0.00 2.01
11 12 3.781965 ACTTATCGGTTAGGGCCCTTAAA 59.218 43.478 34.04 17.59 0.00 1.52
12 13 3.387012 ACTTATCGGTTAGGGCCCTTAA 58.613 45.455 34.04 19.93 0.00 1.85
13 14 2.967887 GACTTATCGGTTAGGGCCCTTA 59.032 50.000 34.04 20.62 0.00 2.69
14 15 1.767088 GACTTATCGGTTAGGGCCCTT 59.233 52.381 34.04 14.06 0.00 3.95
15 16 1.062352 AGACTTATCGGTTAGGGCCCT 60.062 52.381 31.35 31.35 0.00 5.19
16 17 1.421480 AGACTTATCGGTTAGGGCCC 58.579 55.000 16.46 16.46 0.00 5.80
17 18 4.087907 AGATAGACTTATCGGTTAGGGCC 58.912 47.826 0.00 0.00 40.53 5.80
18 19 5.011586 AGAGATAGACTTATCGGTTAGGGC 58.988 45.833 0.00 0.00 40.53 5.19
19 20 7.449086 AGAAAGAGATAGACTTATCGGTTAGGG 59.551 40.741 0.00 0.00 40.53 3.53
20 21 8.398878 AGAAAGAGATAGACTTATCGGTTAGG 57.601 38.462 0.00 0.00 40.53 2.69
21 22 9.058174 TGAGAAAGAGATAGACTTATCGGTTAG 57.942 37.037 0.00 0.00 40.53 2.34
22 23 8.975663 TGAGAAAGAGATAGACTTATCGGTTA 57.024 34.615 0.00 0.00 40.53 2.85
23 24 7.883391 TGAGAAAGAGATAGACTTATCGGTT 57.117 36.000 0.00 0.00 40.53 4.44
24 25 8.472007 AATGAGAAAGAGATAGACTTATCGGT 57.528 34.615 0.00 0.00 40.53 4.69
25 26 9.834628 GTAATGAGAAAGAGATAGACTTATCGG 57.165 37.037 0.00 0.00 40.53 4.18
26 27 9.536558 CGTAATGAGAAAGAGATAGACTTATCG 57.463 37.037 0.00 0.00 40.53 2.92
29 30 8.838365 GGACGTAATGAGAAAGAGATAGACTTA 58.162 37.037 0.00 0.00 0.00 2.24
30 31 7.558444 AGGACGTAATGAGAAAGAGATAGACTT 59.442 37.037 0.00 0.00 0.00 3.01
31 32 7.057894 AGGACGTAATGAGAAAGAGATAGACT 58.942 38.462 0.00 0.00 0.00 3.24
32 33 7.266922 AGGACGTAATGAGAAAGAGATAGAC 57.733 40.000 0.00 0.00 0.00 2.59
33 34 8.212312 ACTAGGACGTAATGAGAAAGAGATAGA 58.788 37.037 0.00 0.00 0.00 1.98
34 35 8.286800 CACTAGGACGTAATGAGAAAGAGATAG 58.713 40.741 0.00 0.00 0.00 2.08
35 36 7.991460 TCACTAGGACGTAATGAGAAAGAGATA 59.009 37.037 0.00 0.00 0.00 1.98
36 37 6.829298 TCACTAGGACGTAATGAGAAAGAGAT 59.171 38.462 0.00 0.00 0.00 2.75
37 38 6.093771 GTCACTAGGACGTAATGAGAAAGAGA 59.906 42.308 0.00 0.00 36.65 3.10
38 39 6.259638 GTCACTAGGACGTAATGAGAAAGAG 58.740 44.000 0.00 0.00 36.65 2.85
39 40 6.192234 GTCACTAGGACGTAATGAGAAAGA 57.808 41.667 0.00 0.00 36.65 2.52
53 54 3.527507 AGACTTGGAGTGTCACTAGGA 57.472 47.619 5.21 0.00 36.94 2.94
54 55 4.156922 CACTAGACTTGGAGTGTCACTAGG 59.843 50.000 5.21 0.00 38.61 3.02
55 56 5.004448 TCACTAGACTTGGAGTGTCACTAG 58.996 45.833 5.21 2.46 43.01 2.57
56 57 4.981812 TCACTAGACTTGGAGTGTCACTA 58.018 43.478 5.21 0.00 43.01 2.74
57 58 3.833732 TCACTAGACTTGGAGTGTCACT 58.166 45.455 4.81 4.81 43.01 3.41
58 59 4.792521 ATCACTAGACTTGGAGTGTCAC 57.207 45.455 0.00 0.00 43.01 3.67
59 60 7.178451 TCAAATATCACTAGACTTGGAGTGTCA 59.822 37.037 0.00 0.00 43.01 3.58
60 61 7.548097 TCAAATATCACTAGACTTGGAGTGTC 58.452 38.462 0.00 0.00 43.01 3.67
61 62 7.482169 TCAAATATCACTAGACTTGGAGTGT 57.518 36.000 0.00 0.00 43.01 3.55
62 63 8.253810 TCTTCAAATATCACTAGACTTGGAGTG 58.746 37.037 0.00 0.00 43.70 3.51
63 64 8.367660 TCTTCAAATATCACTAGACTTGGAGT 57.632 34.615 0.00 0.00 0.00 3.85
100 101 9.773328 CTCGCAAATCTTTTATGTCTTTTGATA 57.227 29.630 0.00 0.00 0.00 2.15
101 102 8.514594 TCTCGCAAATCTTTTATGTCTTTTGAT 58.485 29.630 0.00 0.00 0.00 2.57
102 103 7.870826 TCTCGCAAATCTTTTATGTCTTTTGA 58.129 30.769 0.00 0.00 0.00 2.69
103 104 7.272084 CCTCTCGCAAATCTTTTATGTCTTTTG 59.728 37.037 0.00 0.00 0.00 2.44
104 105 7.308435 CCTCTCGCAAATCTTTTATGTCTTTT 58.692 34.615 0.00 0.00 0.00 2.27
105 106 6.127897 CCCTCTCGCAAATCTTTTATGTCTTT 60.128 38.462 0.00 0.00 0.00 2.52
106 107 5.355350 CCCTCTCGCAAATCTTTTATGTCTT 59.645 40.000 0.00 0.00 0.00 3.01
107 108 4.878397 CCCTCTCGCAAATCTTTTATGTCT 59.122 41.667 0.00 0.00 0.00 3.41
108 109 4.636206 ACCCTCTCGCAAATCTTTTATGTC 59.364 41.667 0.00 0.00 0.00 3.06
109 110 4.396166 CACCCTCTCGCAAATCTTTTATGT 59.604 41.667 0.00 0.00 0.00 2.29
110 111 4.396166 ACACCCTCTCGCAAATCTTTTATG 59.604 41.667 0.00 0.00 0.00 1.90
111 112 4.589908 ACACCCTCTCGCAAATCTTTTAT 58.410 39.130 0.00 0.00 0.00 1.40
112 113 4.015872 ACACCCTCTCGCAAATCTTTTA 57.984 40.909 0.00 0.00 0.00 1.52
113 114 2.863809 ACACCCTCTCGCAAATCTTTT 58.136 42.857 0.00 0.00 0.00 2.27
114 115 2.568623 ACACCCTCTCGCAAATCTTT 57.431 45.000 0.00 0.00 0.00 2.52
115 116 2.354805 GGTACACCCTCTCGCAAATCTT 60.355 50.000 0.00 0.00 0.00 2.40
116 117 1.207329 GGTACACCCTCTCGCAAATCT 59.793 52.381 0.00 0.00 0.00 2.40
117 118 1.207329 AGGTACACCCTCTCGCAAATC 59.793 52.381 0.00 0.00 40.71 2.17
118 119 1.276622 AGGTACACCCTCTCGCAAAT 58.723 50.000 0.00 0.00 40.71 2.32
119 120 1.001633 GAAGGTACACCCTCTCGCAAA 59.998 52.381 0.00 0.00 45.47 3.68
120 121 0.606604 GAAGGTACACCCTCTCGCAA 59.393 55.000 0.00 0.00 45.47 4.85
121 122 1.592400 CGAAGGTACACCCTCTCGCA 61.592 60.000 0.00 0.00 45.47 5.10
122 123 1.139095 CGAAGGTACACCCTCTCGC 59.861 63.158 0.00 0.00 45.47 5.03
123 124 1.132643 CTTCGAAGGTACACCCTCTCG 59.867 57.143 17.70 8.21 45.47 4.04
124 125 2.164017 GACTTCGAAGGTACACCCTCTC 59.836 54.545 27.86 9.40 45.47 3.20
125 126 2.169330 GACTTCGAAGGTACACCCTCT 58.831 52.381 27.86 3.70 45.47 3.69
126 127 1.135460 CGACTTCGAAGGTACACCCTC 60.135 57.143 27.86 13.06 45.47 4.30
127 128 1.546323 TCGACTTCGAAGGTACACCCT 60.546 52.381 27.86 5.22 46.30 4.34
128 129 0.883833 TCGACTTCGAAGGTACACCC 59.116 55.000 27.86 7.81 46.30 4.61
139 140 2.733218 TGCGCAACCTCGACTTCG 60.733 61.111 8.16 0.00 41.45 3.79
140 141 1.891060 CTGTGCGCAACCTCGACTTC 61.891 60.000 14.00 0.00 0.00 3.01
141 142 1.956170 CTGTGCGCAACCTCGACTT 60.956 57.895 14.00 0.00 0.00 3.01
142 143 2.356313 CTGTGCGCAACCTCGACT 60.356 61.111 14.00 0.00 0.00 4.18
143 144 4.077188 GCTGTGCGCAACCTCGAC 62.077 66.667 14.00 0.00 38.92 4.20
150 151 3.997397 TAGGACGGCTGTGCGCAA 61.997 61.111 14.00 1.19 42.00 4.85
151 152 4.735132 GTAGGACGGCTGTGCGCA 62.735 66.667 5.66 5.66 42.00 6.09
154 155 4.735132 TGCGTAGGACGGCTGTGC 62.735 66.667 9.53 9.53 42.82 4.57
155 156 2.167219 CATGCGTAGGACGGCTGTG 61.167 63.158 0.80 0.00 42.82 3.66
156 157 2.184322 CATGCGTAGGACGGCTGT 59.816 61.111 0.00 0.00 42.82 4.40
157 158 2.586079 CCATGCGTAGGACGGCTG 60.586 66.667 0.70 0.00 42.82 4.85
158 159 4.530857 GCCATGCGTAGGACGGCT 62.531 66.667 0.70 0.00 42.82 5.52
160 161 3.385749 AAGGCCATGCGTAGGACGG 62.386 63.158 5.01 0.00 42.82 4.79
161 162 1.883084 GAAGGCCATGCGTAGGACG 60.883 63.158 5.01 0.00 45.88 4.79
162 163 1.090052 GTGAAGGCCATGCGTAGGAC 61.090 60.000 5.01 0.00 0.00 3.85
163 164 1.220749 GTGAAGGCCATGCGTAGGA 59.779 57.895 5.01 0.00 0.00 2.94
164 165 1.819632 GGTGAAGGCCATGCGTAGG 60.820 63.158 5.01 0.00 0.00 3.18
165 166 0.464373 ATGGTGAAGGCCATGCGTAG 60.464 55.000 5.01 0.00 46.63 3.51
166 167 1.607071 ATGGTGAAGGCCATGCGTA 59.393 52.632 5.01 0.00 46.63 4.42
167 168 2.356278 ATGGTGAAGGCCATGCGT 59.644 55.556 5.01 0.00 46.63 5.24
172 173 1.204146 GGACTCTATGGTGAAGGCCA 58.796 55.000 5.01 0.00 43.48 5.36
173 174 1.414550 GAGGACTCTATGGTGAAGGCC 59.585 57.143 0.00 0.00 0.00 5.19
174 175 1.067821 CGAGGACTCTATGGTGAAGGC 59.932 57.143 0.00 0.00 0.00 4.35
175 176 2.359531 GACGAGGACTCTATGGTGAAGG 59.640 54.545 0.00 0.00 0.00 3.46
176 177 2.032302 CGACGAGGACTCTATGGTGAAG 59.968 54.545 0.00 0.00 0.00 3.02
177 178 2.014857 CGACGAGGACTCTATGGTGAA 58.985 52.381 0.00 0.00 0.00 3.18
178 179 1.664873 CGACGAGGACTCTATGGTGA 58.335 55.000 0.00 0.00 0.00 4.02
179 180 0.663688 CCGACGAGGACTCTATGGTG 59.336 60.000 0.00 0.00 45.00 4.17
180 181 0.255318 ACCGACGAGGACTCTATGGT 59.745 55.000 8.56 0.00 45.00 3.55
181 182 0.663688 CACCGACGAGGACTCTATGG 59.336 60.000 8.56 0.00 45.00 2.74
182 183 0.663688 CCACCGACGAGGACTCTATG 59.336 60.000 8.56 0.00 45.00 2.23
183 184 1.102222 GCCACCGACGAGGACTCTAT 61.102 60.000 10.03 0.00 45.00 1.98
184 185 1.748122 GCCACCGACGAGGACTCTA 60.748 63.158 10.03 0.00 45.00 2.43
185 186 3.063084 GCCACCGACGAGGACTCT 61.063 66.667 10.03 0.00 45.00 3.24
186 187 3.063084 AGCCACCGACGAGGACTC 61.063 66.667 10.03 0.00 45.00 3.36
187 188 3.374402 CAGCCACCGACGAGGACT 61.374 66.667 10.03 4.54 45.00 3.85
191 192 3.573772 TTCAGCAGCCACCGACGAG 62.574 63.158 0.00 0.00 0.00 4.18
192 193 3.611674 TTCAGCAGCCACCGACGA 61.612 61.111 0.00 0.00 0.00 4.20
193 194 3.414700 GTTCAGCAGCCACCGACG 61.415 66.667 0.00 0.00 0.00 5.12
194 195 3.050275 GGTTCAGCAGCCACCGAC 61.050 66.667 0.00 0.00 0.00 4.79
197 198 3.050275 GACGGTTCAGCAGCCACC 61.050 66.667 0.00 0.00 0.00 4.61
198 199 2.280797 TGACGGTTCAGCAGCCAC 60.281 61.111 0.00 0.00 0.00 5.01
199 200 2.031012 CTGACGGTTCAGCAGCCA 59.969 61.111 0.00 0.00 42.99 4.75
206 207 3.045142 GTCGGGACTGACGGTTCA 58.955 61.111 0.00 0.00 0.00 3.18
212 213 1.792993 CGTCATTACGTCGGGACTGAC 60.793 57.143 0.00 1.15 44.21 3.51
213 214 0.448990 CGTCATTACGTCGGGACTGA 59.551 55.000 0.00 0.00 44.21 3.41
214 215 2.939782 CGTCATTACGTCGGGACTG 58.060 57.895 0.00 0.00 44.21 3.51
241 242 1.949847 TACTCCTTCGCTGCTGAGGC 61.950 60.000 11.85 0.00 39.26 4.70
242 243 0.532573 TTACTCCTTCGCTGCTGAGG 59.467 55.000 10.77 10.77 0.00 3.86
243 244 2.593346 ATTACTCCTTCGCTGCTGAG 57.407 50.000 0.00 1.21 0.00 3.35
244 245 3.304726 CGATATTACTCCTTCGCTGCTGA 60.305 47.826 0.00 0.00 0.00 4.26
245 246 2.983136 CGATATTACTCCTTCGCTGCTG 59.017 50.000 0.00 0.00 0.00 4.41
246 247 2.029828 CCGATATTACTCCTTCGCTGCT 60.030 50.000 0.00 0.00 0.00 4.24
247 248 2.030185 TCCGATATTACTCCTTCGCTGC 60.030 50.000 0.00 0.00 0.00 5.25
248 249 3.004419 TGTCCGATATTACTCCTTCGCTG 59.996 47.826 0.00 0.00 0.00 5.18
249 250 3.004524 GTGTCCGATATTACTCCTTCGCT 59.995 47.826 0.00 0.00 0.00 4.93
250 251 3.004524 AGTGTCCGATATTACTCCTTCGC 59.995 47.826 0.00 0.00 0.00 4.70
251 252 4.275196 TCAGTGTCCGATATTACTCCTTCG 59.725 45.833 0.00 0.00 0.00 3.79
252 253 5.764131 CTCAGTGTCCGATATTACTCCTTC 58.236 45.833 0.00 0.00 0.00 3.46
253 254 4.038162 GCTCAGTGTCCGATATTACTCCTT 59.962 45.833 0.00 0.00 0.00 3.36
254 255 3.570550 GCTCAGTGTCCGATATTACTCCT 59.429 47.826 0.00 0.00 0.00 3.69
255 256 3.305471 GGCTCAGTGTCCGATATTACTCC 60.305 52.174 0.00 0.00 0.00 3.85
256 257 3.570550 AGGCTCAGTGTCCGATATTACTC 59.429 47.826 0.00 0.00 0.00 2.59
257 258 3.319405 CAGGCTCAGTGTCCGATATTACT 59.681 47.826 0.00 0.00 0.00 2.24
258 259 3.068307 ACAGGCTCAGTGTCCGATATTAC 59.932 47.826 0.00 0.00 0.00 1.89
259 260 3.296854 ACAGGCTCAGTGTCCGATATTA 58.703 45.455 0.00 0.00 0.00 0.98
260 261 2.101582 GACAGGCTCAGTGTCCGATATT 59.898 50.000 0.00 0.00 38.75 1.28
261 262 1.683917 GACAGGCTCAGTGTCCGATAT 59.316 52.381 0.00 0.00 38.75 1.63
262 263 1.103803 GACAGGCTCAGTGTCCGATA 58.896 55.000 0.00 0.00 38.75 2.92
263 264 1.893786 GACAGGCTCAGTGTCCGAT 59.106 57.895 0.00 0.00 38.75 4.18
264 265 3.366629 GACAGGCTCAGTGTCCGA 58.633 61.111 0.00 0.00 38.75 4.55
267 268 2.262915 CGGGACAGGCTCAGTGTC 59.737 66.667 0.00 0.00 43.12 3.67
268 269 2.203640 TCGGGACAGGCTCAGTGT 60.204 61.111 0.00 0.00 0.00 3.55
269 270 2.262915 GTCGGGACAGGCTCAGTG 59.737 66.667 0.00 0.00 0.00 3.66
270 271 3.374402 CGTCGGGACAGGCTCAGT 61.374 66.667 0.00 0.00 0.00 3.41
271 272 3.062466 TCGTCGGGACAGGCTCAG 61.062 66.667 0.00 0.00 0.00 3.35
272 273 3.371063 GTCGTCGGGACAGGCTCA 61.371 66.667 0.00 0.00 45.36 4.26
279 280 2.435586 TCTCGGAGTCGTCGGGAC 60.436 66.667 4.69 0.00 46.45 4.46
280 281 2.125229 CTCTCGGAGTCGTCGGGA 60.125 66.667 4.69 0.00 35.66 5.14
281 282 3.203412 CCTCTCGGAGTCGTCGGG 61.203 72.222 4.69 0.00 37.69 5.14
282 283 3.878519 GCCTCTCGGAGTCGTCGG 61.879 72.222 4.69 1.11 37.69 4.79
283 284 4.225340 CGCCTCTCGGAGTCGTCG 62.225 72.222 4.69 1.72 37.69 5.12
292 293 0.745128 ACAGTCTACTCCGCCTCTCG 60.745 60.000 0.00 0.00 38.08 4.04
293 294 1.133407 CAACAGTCTACTCCGCCTCTC 59.867 57.143 0.00 0.00 0.00 3.20
294 295 1.178276 CAACAGTCTACTCCGCCTCT 58.822 55.000 0.00 0.00 0.00 3.69
295 296 0.889306 ACAACAGTCTACTCCGCCTC 59.111 55.000 0.00 0.00 0.00 4.70
296 297 0.603569 CACAACAGTCTACTCCGCCT 59.396 55.000 0.00 0.00 0.00 5.52
297 298 0.389948 CCACAACAGTCTACTCCGCC 60.390 60.000 0.00 0.00 0.00 6.13
298 299 0.317479 ACCACAACAGTCTACTCCGC 59.683 55.000 0.00 0.00 0.00 5.54
299 300 1.336887 CCACCACAACAGTCTACTCCG 60.337 57.143 0.00 0.00 0.00 4.63
300 301 1.692519 ACCACCACAACAGTCTACTCC 59.307 52.381 0.00 0.00 0.00 3.85
301 302 2.364324 TCACCACCACAACAGTCTACTC 59.636 50.000 0.00 0.00 0.00 2.59
302 303 2.394632 TCACCACCACAACAGTCTACT 58.605 47.619 0.00 0.00 0.00 2.57
303 304 2.902705 TCACCACCACAACAGTCTAC 57.097 50.000 0.00 0.00 0.00 2.59
304 305 3.035363 TCTTCACCACCACAACAGTCTA 58.965 45.455 0.00 0.00 0.00 2.59
305 306 1.837439 TCTTCACCACCACAACAGTCT 59.163 47.619 0.00 0.00 0.00 3.24
306 307 2.325583 TCTTCACCACCACAACAGTC 57.674 50.000 0.00 0.00 0.00 3.51
307 308 2.238646 TCTTCTTCACCACCACAACAGT 59.761 45.455 0.00 0.00 0.00 3.55
308 309 2.917933 TCTTCTTCACCACCACAACAG 58.082 47.619 0.00 0.00 0.00 3.16
309 310 3.054728 TCTTCTTCTTCACCACCACAACA 60.055 43.478 0.00 0.00 0.00 3.33
310 311 3.541632 TCTTCTTCTTCACCACCACAAC 58.458 45.455 0.00 0.00 0.00 3.32
311 312 3.924114 TCTTCTTCTTCACCACCACAA 57.076 42.857 0.00 0.00 0.00 3.33
312 313 3.554960 CGATCTTCTTCTTCACCACCACA 60.555 47.826 0.00 0.00 0.00 4.17
313 314 2.996621 CGATCTTCTTCTTCACCACCAC 59.003 50.000 0.00 0.00 0.00 4.16
314 315 2.612972 GCGATCTTCTTCTTCACCACCA 60.613 50.000 0.00 0.00 0.00 4.17
315 316 2.003301 GCGATCTTCTTCTTCACCACC 58.997 52.381 0.00 0.00 0.00 4.61
316 317 2.688507 TGCGATCTTCTTCTTCACCAC 58.311 47.619 0.00 0.00 0.00 4.16
317 318 3.329386 CTTGCGATCTTCTTCTTCACCA 58.671 45.455 0.00 0.00 0.00 4.17
318 319 2.675348 CCTTGCGATCTTCTTCTTCACC 59.325 50.000 0.00 0.00 0.00 4.02
319 320 2.675348 CCCTTGCGATCTTCTTCTTCAC 59.325 50.000 0.00 0.00 0.00 3.18
320 321 2.936993 GCCCTTGCGATCTTCTTCTTCA 60.937 50.000 0.00 0.00 0.00 3.02
321 322 1.668237 GCCCTTGCGATCTTCTTCTTC 59.332 52.381 0.00 0.00 0.00 2.87
322 323 1.280421 AGCCCTTGCGATCTTCTTCTT 59.720 47.619 0.00 0.00 44.33 2.52
323 324 0.908198 AGCCCTTGCGATCTTCTTCT 59.092 50.000 0.00 0.00 44.33 2.85
324 325 1.012841 CAGCCCTTGCGATCTTCTTC 58.987 55.000 0.00 0.00 44.33 2.87
325 326 1.028868 GCAGCCCTTGCGATCTTCTT 61.029 55.000 0.00 0.00 44.09 2.52
326 327 1.451028 GCAGCCCTTGCGATCTTCT 60.451 57.895 0.00 0.00 44.09 2.85
327 328 3.105659 GCAGCCCTTGCGATCTTC 58.894 61.111 0.00 0.00 44.09 2.87
343 344 3.535962 CCGAGGAGGCTGAGGAGC 61.536 72.222 0.00 0.00 45.40 4.70
344 345 2.837291 CCCGAGGAGGCTGAGGAG 60.837 72.222 0.00 0.00 39.21 3.69
345 346 3.347590 TCCCGAGGAGGCTGAGGA 61.348 66.667 0.00 0.00 39.21 3.71
346 347 3.151022 GTCCCGAGGAGGCTGAGG 61.151 72.222 0.00 0.00 39.21 3.86
347 348 3.151022 GGTCCCGAGGAGGCTGAG 61.151 72.222 0.00 0.00 39.21 3.35
352 353 3.148279 CTTCCGGTCCCGAGGAGG 61.148 72.222 7.42 0.00 42.83 4.30
353 354 3.839432 GCTTCCGGTCCCGAGGAG 61.839 72.222 7.42 2.90 42.83 3.69
378 379 3.706373 CACCTCCGTCACCAGGGG 61.706 72.222 0.00 0.00 33.57 4.79
379 380 1.605058 CTACACCTCCGTCACCAGGG 61.605 65.000 0.00 0.00 33.57 4.45
380 381 0.611062 TCTACACCTCCGTCACCAGG 60.611 60.000 0.00 0.00 35.69 4.45
381 382 1.135139 CATCTACACCTCCGTCACCAG 59.865 57.143 0.00 0.00 0.00 4.00
382 383 1.182667 CATCTACACCTCCGTCACCA 58.817 55.000 0.00 0.00 0.00 4.17
383 384 1.471119 TCATCTACACCTCCGTCACC 58.529 55.000 0.00 0.00 0.00 4.02
384 385 4.608951 GTTATCATCTACACCTCCGTCAC 58.391 47.826 0.00 0.00 0.00 3.67
385 386 3.314357 CGTTATCATCTACACCTCCGTCA 59.686 47.826 0.00 0.00 0.00 4.35
386 387 3.852572 GCGTTATCATCTACACCTCCGTC 60.853 52.174 0.00 0.00 0.00 4.79
387 388 2.034305 GCGTTATCATCTACACCTCCGT 59.966 50.000 0.00 0.00 0.00 4.69
388 389 2.662700 GCGTTATCATCTACACCTCCG 58.337 52.381 0.00 0.00 0.00 4.63
389 390 2.662700 CGCGTTATCATCTACACCTCC 58.337 52.381 0.00 0.00 0.00 4.30
390 391 2.052157 GCGCGTTATCATCTACACCTC 58.948 52.381 8.43 0.00 0.00 3.85
391 392 1.599667 CGCGCGTTATCATCTACACCT 60.600 52.381 24.19 0.00 0.00 4.00
392 393 0.776451 CGCGCGTTATCATCTACACC 59.224 55.000 24.19 0.00 0.00 4.16
393 394 0.776451 CCGCGCGTTATCATCTACAC 59.224 55.000 29.95 0.00 0.00 2.90
394 395 0.664224 TCCGCGCGTTATCATCTACA 59.336 50.000 29.95 0.00 0.00 2.74
395 396 1.328439 CTCCGCGCGTTATCATCTAC 58.672 55.000 29.95 0.00 0.00 2.59
396 397 0.949397 ACTCCGCGCGTTATCATCTA 59.051 50.000 29.95 1.19 0.00 1.98
397 398 0.102481 AACTCCGCGCGTTATCATCT 59.898 50.000 29.95 1.15 0.00 2.90
398 399 0.503117 GAACTCCGCGCGTTATCATC 59.497 55.000 29.95 14.67 0.00 2.92
399 400 0.874607 GGAACTCCGCGCGTTATCAT 60.875 55.000 29.95 9.48 0.00 2.45
400 401 1.517694 GGAACTCCGCGCGTTATCA 60.518 57.895 29.95 5.76 0.00 2.15
401 402 3.306634 GGAACTCCGCGCGTTATC 58.693 61.111 29.95 19.60 0.00 1.75
418 419 4.463879 CAGGAGTCTGCCAGGGCG 62.464 72.222 5.74 0.92 45.51 6.13
419 420 4.106925 CCAGGAGTCTGCCAGGGC 62.107 72.222 2.62 2.62 39.61 5.19
420 421 4.106925 GCCAGGAGTCTGCCAGGG 62.107 72.222 0.00 0.00 39.61 4.45
421 422 1.684386 CTAGCCAGGAGTCTGCCAGG 61.684 65.000 0.00 0.00 39.61 4.45
422 423 1.821936 CTAGCCAGGAGTCTGCCAG 59.178 63.158 0.00 0.00 39.61 4.85
423 424 2.362369 GCTAGCCAGGAGTCTGCCA 61.362 63.158 2.29 0.00 39.61 4.92
424 425 2.362369 TGCTAGCCAGGAGTCTGCC 61.362 63.158 13.29 0.00 39.61 4.85
425 426 1.153469 GTGCTAGCCAGGAGTCTGC 60.153 63.158 13.29 0.00 39.61 4.26
426 427 1.140589 CGTGCTAGCCAGGAGTCTG 59.859 63.158 13.29 0.00 40.59 3.51
427 428 0.612174 TTCGTGCTAGCCAGGAGTCT 60.612 55.000 13.29 0.00 39.29 3.24
428 429 0.461961 ATTCGTGCTAGCCAGGAGTC 59.538 55.000 13.29 0.00 39.29 3.36
429 430 0.176680 CATTCGTGCTAGCCAGGAGT 59.823 55.000 13.29 5.76 39.29 3.85
430 431 0.531532 CCATTCGTGCTAGCCAGGAG 60.532 60.000 13.29 0.00 39.29 3.69
431 432 0.975556 TCCATTCGTGCTAGCCAGGA 60.976 55.000 13.29 8.69 36.62 3.86
432 433 0.811616 GTCCATTCGTGCTAGCCAGG 60.812 60.000 13.29 6.41 0.00 4.45
433 434 1.148157 CGTCCATTCGTGCTAGCCAG 61.148 60.000 13.29 6.21 0.00 4.85
434 435 1.153647 CGTCCATTCGTGCTAGCCA 60.154 57.895 13.29 0.00 0.00 4.75
435 436 1.883084 CCGTCCATTCGTGCTAGCC 60.883 63.158 13.29 2.49 0.00 3.93
436 437 1.883084 CCCGTCCATTCGTGCTAGC 60.883 63.158 8.10 8.10 0.00 3.42
437 438 1.227263 CCCCGTCCATTCGTGCTAG 60.227 63.158 0.00 0.00 0.00 3.42
438 439 1.672854 CTCCCCGTCCATTCGTGCTA 61.673 60.000 0.00 0.00 0.00 3.49
439 440 3.000819 TCCCCGTCCATTCGTGCT 61.001 61.111 0.00 0.00 0.00 4.40
440 441 2.511600 CTCCCCGTCCATTCGTGC 60.512 66.667 0.00 0.00 0.00 5.34
441 442 0.460284 CTTCTCCCCGTCCATTCGTG 60.460 60.000 0.00 0.00 0.00 4.35
442 443 0.613853 TCTTCTCCCCGTCCATTCGT 60.614 55.000 0.00 0.00 0.00 3.85
443 444 0.753262 ATCTTCTCCCCGTCCATTCG 59.247 55.000 0.00 0.00 0.00 3.34
444 445 1.762957 TGATCTTCTCCCCGTCCATTC 59.237 52.381 0.00 0.00 0.00 2.67
445 446 1.486726 GTGATCTTCTCCCCGTCCATT 59.513 52.381 0.00 0.00 0.00 3.16
446 447 1.123928 GTGATCTTCTCCCCGTCCAT 58.876 55.000 0.00 0.00 0.00 3.41
447 448 0.041238 AGTGATCTTCTCCCCGTCCA 59.959 55.000 0.00 0.00 0.00 4.02
448 449 0.747852 GAGTGATCTTCTCCCCGTCC 59.252 60.000 0.00 0.00 0.00 4.79
449 450 0.747852 GGAGTGATCTTCTCCCCGTC 59.252 60.000 19.72 2.75 43.90 4.79
450 451 2.903404 GGAGTGATCTTCTCCCCGT 58.097 57.895 19.72 0.00 43.90 5.28
455 456 0.747852 GGACGGGGAGTGATCTTCTC 59.252 60.000 9.07 9.07 0.00 2.87
456 457 0.041238 TGGACGGGGAGTGATCTTCT 59.959 55.000 0.00 0.00 0.00 2.85
457 458 0.175989 GTGGACGGGGAGTGATCTTC 59.824 60.000 0.00 0.00 0.00 2.87
458 459 0.544357 TGTGGACGGGGAGTGATCTT 60.544 55.000 0.00 0.00 0.00 2.40
459 460 0.972983 CTGTGGACGGGGAGTGATCT 60.973 60.000 0.00 0.00 0.00 2.75
460 461 1.258445 ACTGTGGACGGGGAGTGATC 61.258 60.000 0.00 0.00 0.00 2.92
461 462 0.836400 AACTGTGGACGGGGAGTGAT 60.836 55.000 0.00 0.00 0.00 3.06
462 463 1.458777 AACTGTGGACGGGGAGTGA 60.459 57.895 0.00 0.00 0.00 3.41
463 464 1.301716 CAACTGTGGACGGGGAGTG 60.302 63.158 0.00 0.00 0.00 3.51
464 465 1.342672 AACAACTGTGGACGGGGAGT 61.343 55.000 0.00 0.00 0.00 3.85
465 466 0.682852 TAACAACTGTGGACGGGGAG 59.317 55.000 0.00 0.00 0.00 4.30
466 467 1.354101 ATAACAACTGTGGACGGGGA 58.646 50.000 0.00 0.00 0.00 4.81
467 468 3.202906 CATATAACAACTGTGGACGGGG 58.797 50.000 0.00 0.00 0.00 5.73
468 469 3.869065 ACATATAACAACTGTGGACGGG 58.131 45.455 0.00 0.00 0.00 5.28
469 470 4.500127 TGACATATAACAACTGTGGACGG 58.500 43.478 0.00 0.00 0.00 4.79
470 471 6.662414 ATTGACATATAACAACTGTGGACG 57.338 37.500 0.00 0.00 0.00 4.79
471 472 7.816640 ACAATTGACATATAACAACTGTGGAC 58.183 34.615 13.59 0.00 35.65 4.02
472 473 7.663493 TGACAATTGACATATAACAACTGTGGA 59.337 33.333 13.59 0.00 36.77 4.02
473 474 7.815641 TGACAATTGACATATAACAACTGTGG 58.184 34.615 13.59 0.00 36.77 4.17
474 475 9.281075 CATGACAATTGACATATAACAACTGTG 57.719 33.333 20.36 4.64 36.77 3.66
510 515 6.802348 GCATAAATAAGCAGAGAATCATGCAG 59.198 38.462 11.97 0.00 40.25 4.41
514 519 6.233434 TCGGCATAAATAAGCAGAGAATCAT 58.767 36.000 0.00 0.00 37.82 2.45
520 525 4.913924 GCATTTCGGCATAAATAAGCAGAG 59.086 41.667 0.00 0.00 36.39 3.35
615 620 3.909776 ATGATGATATGCAAACTGGCG 57.090 42.857 0.00 0.00 36.28 5.69
817 834 6.939730 TGTGATTGTTAATTAGTGCTCCTTGA 59.060 34.615 0.00 0.00 0.00 3.02
822 839 5.022021 GCGTGTGATTGTTAATTAGTGCTC 58.978 41.667 0.00 0.00 0.00 4.26
866 883 5.201713 CCACATGATACTGGTGGTAGTAG 57.798 47.826 0.00 0.00 45.48 2.57
873 949 2.679837 GTGAAGCCACATGATACTGGTG 59.320 50.000 0.00 0.00 42.72 4.17
898 978 6.179906 TCTACTACTTGTATAGGTAGCCGT 57.820 41.667 8.43 0.00 39.01 5.68
899 979 5.122082 GCTCTACTACTTGTATAGGTAGCCG 59.878 48.000 8.43 1.37 39.01 5.52
900 980 5.122082 CGCTCTACTACTTGTATAGGTAGCC 59.878 48.000 8.43 0.00 39.01 3.93
901 981 5.931146 TCGCTCTACTACTTGTATAGGTAGC 59.069 44.000 8.43 0.00 39.01 3.58
905 985 6.349445 CCCATTCGCTCTACTACTTGTATAGG 60.349 46.154 0.00 0.00 0.00 2.57
954 1047 1.163420 TGCTAGCCCGTGTGTGTTTG 61.163 55.000 13.29 0.00 0.00 2.93
965 1060 2.808543 CTGTAATTTCGGATGCTAGCCC 59.191 50.000 13.29 6.07 0.00 5.19
966 1061 2.808543 CCTGTAATTTCGGATGCTAGCC 59.191 50.000 13.29 0.00 0.00 3.93
967 1062 3.248602 CACCTGTAATTTCGGATGCTAGC 59.751 47.826 8.10 8.10 0.00 3.42
969 1064 4.693283 CTCACCTGTAATTTCGGATGCTA 58.307 43.478 0.00 0.00 0.00 3.49
970 1065 3.535561 CTCACCTGTAATTTCGGATGCT 58.464 45.455 0.00 0.00 0.00 3.79
976 1073 1.927174 CTCGGCTCACCTGTAATTTCG 59.073 52.381 0.00 0.00 0.00 3.46
986 1083 2.892425 CCATTCGCTCGGCTCACC 60.892 66.667 0.00 0.00 0.00 4.02
1013 1110 3.589654 ATGTCGTCCACGCCACCAG 62.590 63.158 0.00 0.00 39.60 4.00
1014 1111 3.583276 GATGTCGTCCACGCCACCA 62.583 63.158 0.00 0.00 39.60 4.17
1461 1558 0.544357 AGTTCTGGATCCCCACGTCA 60.544 55.000 9.90 0.00 37.58 4.35
1563 1660 1.376037 GGTGGGGAAGACGCTGAAG 60.376 63.158 0.00 0.00 0.00 3.02
1623 1720 6.435277 CCCCATCTGTATGCTAAATTGCTAAT 59.565 38.462 0.00 0.00 0.00 1.73
1625 1722 5.163099 ACCCCATCTGTATGCTAAATTGCTA 60.163 40.000 0.00 0.00 0.00 3.49
1627 1724 3.891366 ACCCCATCTGTATGCTAAATTGC 59.109 43.478 0.00 0.00 0.00 3.56
1628 1725 5.132502 TGACCCCATCTGTATGCTAAATTG 58.867 41.667 0.00 0.00 0.00 2.32
1630 1727 4.413520 ACTGACCCCATCTGTATGCTAAAT 59.586 41.667 0.00 0.00 37.70 1.40
1631 1728 3.780294 ACTGACCCCATCTGTATGCTAAA 59.220 43.478 0.00 0.00 37.70 1.85
1632 1729 3.384168 ACTGACCCCATCTGTATGCTAA 58.616 45.455 0.00 0.00 37.70 3.09
1633 1730 3.046283 ACTGACCCCATCTGTATGCTA 57.954 47.619 0.00 0.00 37.70 3.49
1825 1932 6.972901 CACGACATGCTCTAAGAAACTGTATA 59.027 38.462 0.00 0.00 0.00 1.47
1896 2026 6.658816 TCAGTTATGGCAGAAATTTTCTAGCA 59.341 34.615 22.99 15.05 38.11 3.49
1952 2082 7.481798 GCGAACATGTTTTAATACTTGGAGAAG 59.518 37.037 13.36 0.00 35.07 2.85
1990 2120 1.844544 TTAGGGCGGGTCCTGGTTTC 61.845 60.000 1.17 0.00 37.75 2.78
1996 2126 2.298661 CCTGTTTAGGGCGGGTCCT 61.299 63.158 0.00 0.00 40.63 3.85
2181 2313 3.570540 TGAGATGGACGAAGATGAGGAT 58.429 45.455 0.00 0.00 0.00 3.24
2229 2583 9.391006 GAGTTGATTGTAATGGGAAGTATTGTA 57.609 33.333 0.00 0.00 0.00 2.41
2322 2683 4.286707 TGTCGGAATTATCCTCCTTGAGA 58.713 43.478 0.00 0.00 44.17 3.27
2352 2713 2.759795 GCTCAACCCAAGCTCCCT 59.240 61.111 0.00 0.00 36.80 4.20
2353 2714 2.361737 GGCTCAACCCAAGCTCCC 60.362 66.667 0.00 0.00 39.75 4.30
2354 2715 1.228552 TTGGCTCAACCCAAGCTCC 60.229 57.895 0.00 0.00 39.85 4.70
2355 2716 0.823356 TGTTGGCTCAACCCAAGCTC 60.823 55.000 13.35 0.00 45.03 4.09
2356 2717 0.178953 ATGTTGGCTCAACCCAAGCT 60.179 50.000 13.35 0.00 45.03 3.74
2358 2719 2.094675 CCTATGTTGGCTCAACCCAAG 58.905 52.381 13.35 8.86 45.03 3.61
2451 2876 1.791555 CGACATTTGCTAGCCGCTTTG 60.792 52.381 13.29 5.55 40.11 2.77
2453 2878 0.673644 ACGACATTTGCTAGCCGCTT 60.674 50.000 13.29 0.00 40.11 4.68
2481 2906 3.632145 TCTTTGTTGGAAAGAAGCTCCAC 59.368 43.478 0.00 0.00 42.76 4.02
2520 2945 3.796111 TCTCTCCTCCTTGATGTCCTTT 58.204 45.455 0.00 0.00 0.00 3.11
2521 2946 3.481559 TCTCTCCTCCTTGATGTCCTT 57.518 47.619 0.00 0.00 0.00 3.36
2522 2947 3.373830 CTTCTCTCCTCCTTGATGTCCT 58.626 50.000 0.00 0.00 0.00 3.85
2597 3022 0.263172 TCTCCCTCACCATCTCCTCC 59.737 60.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.