Multiple sequence alignment - TraesCS7D01G547300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G547300 chr7D 100.000 2687 0 0 1 2687 633511768 633514454 0.000000e+00 4963.0
1 TraesCS7D01G547300 chr7D 84.112 963 111 25 676 1601 422717964 422718921 0.000000e+00 893.0
2 TraesCS7D01G547300 chr7A 88.842 1174 80 20 528 1672 733576919 733575768 0.000000e+00 1395.0
3 TraesCS7D01G547300 chr7A 82.752 974 111 30 683 1602 510469906 510468936 0.000000e+00 815.0
4 TraesCS7D01G547300 chr7A 90.476 546 47 4 2090 2632 733574545 733574002 0.000000e+00 715.0
5 TraesCS7D01G547300 chr7A 85.009 527 61 10 1 525 733577490 733576980 1.100000e-143 520.0
6 TraesCS7D01G547300 chr7A 85.317 504 63 8 1114 1610 510403175 510402676 6.640000e-141 510.0
7 TraesCS7D01G547300 chr7A 87.220 313 22 6 1793 2089 733574892 733574582 9.210000e-90 340.0
8 TraesCS7D01G547300 chr7A 94.521 146 8 0 1671 1816 733575200 733575055 2.690000e-55 226.0
9 TraesCS7D01G547300 chr7A 81.752 137 20 5 527 660 126096930 126096796 2.830000e-20 110.0
10 TraesCS7D01G547300 chr7B 84.336 964 110 21 676 1610 439859881 439860832 0.000000e+00 905.0
11 TraesCS7D01G547300 chr4A 74.499 549 122 16 2090 2628 578396337 578396877 3.480000e-54 222.0
12 TraesCS7D01G547300 chr6B 76.961 408 75 11 1696 2089 13972665 13972263 5.830000e-52 215.0
13 TraesCS7D01G547300 chr2A 74.384 406 89 7 1696 2089 90583054 90583456 2.770000e-35 159.0
14 TraesCS7D01G547300 chr1D 73.699 346 85 6 1696 2038 95786594 95786936 2.170000e-26 130.0
15 TraesCS7D01G547300 chr4B 83.158 95 16 0 428 522 633949417 633949511 1.330000e-13 87.9
16 TraesCS7D01G547300 chr2D 88.060 67 7 1 609 674 25177729 25177795 7.980000e-11 78.7
17 TraesCS7D01G547300 chrUn 88.710 62 6 1 613 673 129538929 129538868 1.030000e-09 75.0
18 TraesCS7D01G547300 chr3A 93.478 46 3 0 622 667 439465202 439465247 4.800000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G547300 chr7D 633511768 633514454 2686 False 4963.0 4963 100.0000 1 2687 1 chr7D.!!$F2 2686
1 TraesCS7D01G547300 chr7D 422717964 422718921 957 False 893.0 893 84.1120 676 1601 1 chr7D.!!$F1 925
2 TraesCS7D01G547300 chr7A 510468936 510469906 970 True 815.0 815 82.7520 683 1602 1 chr7A.!!$R3 919
3 TraesCS7D01G547300 chr7A 733574002 733577490 3488 True 639.2 1395 89.2136 1 2632 5 chr7A.!!$R4 2631
4 TraesCS7D01G547300 chr7B 439859881 439860832 951 False 905.0 905 84.3360 676 1610 1 chr7B.!!$F1 934
5 TraesCS7D01G547300 chr4A 578396337 578396877 540 False 222.0 222 74.4990 2090 2628 1 chr4A.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 22 0.036732 TTGAGCCATGTCGCTTTCCT 59.963 50.0 0.0 0.0 39.87 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 2805 0.254178 ATTGACAAGCCCGAGAGCAT 59.746 50.0 0.0 0.0 34.23 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 0.036732 TTGAGCCATGTCGCTTTCCT 59.963 50.000 0.00 0.00 39.87 3.36
31 33 6.366332 CCATGTCGCTTTCCTATTATAGTGTC 59.634 42.308 0.00 0.00 0.00 3.67
34 36 5.921408 GTCGCTTTCCTATTATAGTGTCTGG 59.079 44.000 0.00 0.00 0.00 3.86
50 52 4.097286 GTGTCTGGAGCTAGTAAGAGGAAG 59.903 50.000 0.00 0.00 0.00 3.46
52 54 4.951094 GTCTGGAGCTAGTAAGAGGAAGAA 59.049 45.833 0.00 0.00 0.00 2.52
66 68 5.809001 AGAGGAAGAACATAAGCAACATGA 58.191 37.500 0.00 0.00 0.00 3.07
96 98 3.601685 AAAAACAGCCACCGCCGG 61.602 61.111 0.00 0.00 34.57 6.13
97 99 4.887190 AAAACAGCCACCGCCGGT 62.887 61.111 1.02 1.02 35.62 5.28
167 169 6.417191 TGTCAGAATTAATAACAAGGCGAC 57.583 37.500 0.00 0.00 0.00 5.19
168 170 5.353123 TGTCAGAATTAATAACAAGGCGACC 59.647 40.000 0.00 0.00 0.00 4.79
171 173 5.123186 CAGAATTAATAACAAGGCGACCACA 59.877 40.000 0.00 0.00 0.00 4.17
174 176 1.530323 ATAACAAGGCGACCACAACC 58.470 50.000 0.00 0.00 0.00 3.77
177 179 2.594592 AAGGCGACCACAACCTGC 60.595 61.111 0.00 0.00 32.92 4.85
178 180 4.643387 AGGCGACCACAACCTGCC 62.643 66.667 0.00 0.00 46.07 4.85
185 187 2.353376 CACAACCTGCCGTTTGCG 60.353 61.111 0.00 0.00 45.60 4.85
192 194 1.206578 CTGCCGTTTGCGTTAGGTG 59.793 57.895 0.00 0.00 45.60 4.00
196 198 1.206578 CGTTTGCGTTAGGTGCAGG 59.793 57.895 0.00 0.00 44.28 4.85
198 200 2.265182 TTTGCGTTAGGTGCAGGCC 61.265 57.895 0.00 0.00 44.28 5.19
206 208 2.016393 TAGGTGCAGGCCGAATCTCG 62.016 60.000 0.00 0.00 40.07 4.04
218 220 2.076863 CGAATCTCGGTTCCAAAGCTT 58.923 47.619 0.00 0.00 36.00 3.74
219 221 2.484264 CGAATCTCGGTTCCAAAGCTTT 59.516 45.455 5.69 5.69 36.00 3.51
240 242 4.320608 TTGCAGCGATGACATCTATACA 57.679 40.909 4.02 4.30 0.00 2.29
265 267 9.347240 CACCAGATAACTCTTTATGGATTGAAT 57.653 33.333 0.00 0.00 0.00 2.57
271 273 6.369059 ACTCTTTATGGATTGAATCTTGCG 57.631 37.500 5.03 0.00 0.00 4.85
293 295 0.334676 CCCCTCTCTCAGTCTCCACT 59.665 60.000 0.00 0.00 0.00 4.00
300 302 5.656416 CCTCTCTCAGTCTCCACTAATCTTT 59.344 44.000 0.00 0.00 0.00 2.52
314 316 8.071854 TCCACTAATCTTTCTCCCCTATTTCTA 58.928 37.037 0.00 0.00 0.00 2.10
337 339 0.264359 ATGGACCTCTCCTCCCTCTG 59.736 60.000 0.00 0.00 37.48 3.35
338 340 0.851332 TGGACCTCTCCTCCCTCTGA 60.851 60.000 0.00 0.00 37.48 3.27
397 399 4.923871 TCTGACTGTTTCTTTGCGATACTC 59.076 41.667 0.00 0.00 0.00 2.59
422 424 5.473846 TCGTACATAAGAGACCCTGATCATC 59.526 44.000 0.00 0.00 0.00 2.92
423 425 5.475220 CGTACATAAGAGACCCTGATCATCT 59.525 44.000 0.00 0.00 0.00 2.90
425 427 7.175119 CGTACATAAGAGACCCTGATCATCTAA 59.825 40.741 0.00 0.00 0.00 2.10
426 428 7.296628 ACATAAGAGACCCTGATCATCTAAC 57.703 40.000 0.00 0.00 0.00 2.34
429 431 6.478512 AAGAGACCCTGATCATCTAACTTC 57.521 41.667 0.00 0.00 0.00 3.01
447 449 8.810427 TCTAACTTCTTTAACACAGTACAAACG 58.190 33.333 0.00 0.00 0.00 3.60
456 458 1.001048 ACAGTACAAACGCAGACGCTA 60.001 47.619 0.00 0.00 45.53 4.26
458 460 2.666508 CAGTACAAACGCAGACGCTAAT 59.333 45.455 0.00 0.00 45.53 1.73
459 461 2.666508 AGTACAAACGCAGACGCTAATG 59.333 45.455 0.00 0.00 45.53 1.90
465 467 0.159554 CGCAGACGCTAATGCATACG 59.840 55.000 13.30 13.30 42.68 3.06
466 468 1.487482 GCAGACGCTAATGCATACGA 58.513 50.000 19.67 0.42 42.11 3.43
478 480 7.220875 CGCTAATGCATACGAACATATACTCAT 59.779 37.037 0.00 0.00 39.64 2.90
485 487 7.649705 GCATACGAACATATACTCATCCCTATG 59.350 40.741 0.00 0.00 0.00 2.23
493 495 1.414181 ACTCATCCCTATGAAGGCACG 59.586 52.381 0.00 0.00 41.57 5.34
510 512 3.064324 GCATGCACACCTCACCCC 61.064 66.667 14.21 0.00 0.00 4.95
516 518 0.179000 GCACACCTCACCCCTATGAG 59.821 60.000 0.00 0.00 44.91 2.90
525 527 1.338136 ACCCCTATGAGCACCTTCGG 61.338 60.000 0.00 0.00 0.00 4.30
526 528 1.447643 CCCTATGAGCACCTTCGGG 59.552 63.158 0.00 0.00 41.87 5.14
538 598 2.108970 ACCTTCGGGAATGTCTCCTAC 58.891 52.381 0.00 0.00 44.68 3.18
547 607 3.260884 GGAATGTCTCCTACCACTGAACA 59.739 47.826 0.00 0.00 41.61 3.18
553 613 3.646162 TCTCCTACCACTGAACACACATT 59.354 43.478 0.00 0.00 0.00 2.71
557 617 1.031235 CCACTGAACACACATTGCCA 58.969 50.000 0.00 0.00 0.00 4.92
558 618 1.001048 CCACTGAACACACATTGCCAG 60.001 52.381 0.00 0.00 36.05 4.85
561 621 3.023119 ACTGAACACACATTGCCAGAAA 58.977 40.909 0.00 0.00 34.76 2.52
562 622 3.067180 ACTGAACACACATTGCCAGAAAG 59.933 43.478 0.00 0.00 34.76 2.62
563 623 2.223782 TGAACACACATTGCCAGAAAGC 60.224 45.455 0.00 0.00 0.00 3.51
570 630 2.901839 ACATTGCCAGAAAGCCTGAAAT 59.098 40.909 0.00 0.00 45.78 2.17
572 632 4.713321 ACATTGCCAGAAAGCCTGAAATAT 59.287 37.500 0.00 0.00 45.78 1.28
575 635 6.639632 TTGCCAGAAAGCCTGAAATATATC 57.360 37.500 0.00 0.00 45.78 1.63
587 647 7.288389 AGCCTGAAATATATCCAGAAAAATGCA 59.712 33.333 13.63 0.00 0.00 3.96
589 649 9.991906 CCTGAAATATATCCAGAAAAATGCAAT 57.008 29.630 13.63 0.00 0.00 3.56
595 655 4.952071 TCCAGAAAAATGCAATGACCAA 57.048 36.364 0.00 0.00 0.00 3.67
598 658 4.998672 CCAGAAAAATGCAATGACCAATGT 59.001 37.500 0.00 0.00 0.00 2.71
599 659 5.121142 CCAGAAAAATGCAATGACCAATGTC 59.879 40.000 0.00 0.00 42.12 3.06
625 685 0.693049 AGGACATGAACCTGGTGGAC 59.307 55.000 13.51 0.00 36.30 4.02
629 689 2.832129 GACATGAACCTGGTGGACTAGA 59.168 50.000 0.00 0.00 37.04 2.43
630 690 2.834549 ACATGAACCTGGTGGACTAGAG 59.165 50.000 0.00 0.00 37.04 2.43
641 701 4.904253 GTGGACTAGAGATACCACTGTC 57.096 50.000 0.00 0.00 46.14 3.51
642 702 3.633065 GTGGACTAGAGATACCACTGTCC 59.367 52.174 0.00 0.00 46.14 4.02
643 703 3.528078 TGGACTAGAGATACCACTGTCCT 59.472 47.826 0.00 0.00 41.93 3.85
644 704 4.017407 TGGACTAGAGATACCACTGTCCTT 60.017 45.833 0.00 0.00 41.93 3.36
645 705 4.957327 GGACTAGAGATACCACTGTCCTTT 59.043 45.833 0.00 0.00 39.30 3.11
646 706 5.422650 GGACTAGAGATACCACTGTCCTTTT 59.577 44.000 0.00 0.00 39.30 2.27
647 707 6.606395 GGACTAGAGATACCACTGTCCTTTTA 59.394 42.308 0.00 0.00 39.30 1.52
648 708 7.123847 GGACTAGAGATACCACTGTCCTTTTAA 59.876 40.741 0.00 0.00 39.30 1.52
649 709 7.838884 ACTAGAGATACCACTGTCCTTTTAAC 58.161 38.462 0.00 0.00 0.00 2.01
650 710 6.051179 AGAGATACCACTGTCCTTTTAACC 57.949 41.667 0.00 0.00 0.00 2.85
651 711 5.546499 AGAGATACCACTGTCCTTTTAACCA 59.454 40.000 0.00 0.00 0.00 3.67
652 712 6.215636 AGAGATACCACTGTCCTTTTAACCAT 59.784 38.462 0.00 0.00 0.00 3.55
653 713 6.415573 AGATACCACTGTCCTTTTAACCATC 58.584 40.000 0.00 0.00 0.00 3.51
681 741 7.669427 ACCATATGTTGATTTGCTTTCTTGAA 58.331 30.769 1.24 0.00 0.00 2.69
697 757 7.566760 TTTCTTGAACATCTAACTGAAAGCA 57.433 32.000 0.00 0.00 37.60 3.91
841 938 1.271543 CCACCAGGATGACACACACAT 60.272 52.381 0.00 0.00 39.69 3.21
850 961 3.483808 TGACACACACATACACACCAT 57.516 42.857 0.00 0.00 0.00 3.55
886 1004 4.799678 TGTGCATGTTACGGTAATTTTGG 58.200 39.130 3.59 0.00 0.00 3.28
1004 1136 0.748005 ACACCAGCACACACCTGAAC 60.748 55.000 0.00 0.00 32.03 3.18
1010 1142 1.102978 GCACACACCTGAACCAAACT 58.897 50.000 0.00 0.00 0.00 2.66
1209 1372 1.518133 CTGCTCGCCTTCCTCTTCG 60.518 63.158 0.00 0.00 0.00 3.79
1274 1437 3.726517 CAGCTCCCGCAACAACCG 61.727 66.667 0.00 0.00 39.10 4.44
1282 1445 2.747686 GCAACAACCGGAGAGGGA 59.252 61.111 9.46 0.00 46.96 4.20
1283 1446 1.671379 GCAACAACCGGAGAGGGAC 60.671 63.158 9.46 0.00 46.96 4.46
1490 1657 1.227645 CCATGACCGGTGCATCGAT 60.228 57.895 23.56 1.61 0.00 3.59
1550 1717 2.113139 CCGGTTGTTGCCTCCACT 59.887 61.111 0.00 0.00 0.00 4.00
1592 1759 0.940126 CCCGTGCTATGCAATCTGTC 59.060 55.000 0.00 0.00 41.47 3.51
1611 1778 5.940470 TCTGTCTAGGGCTTCTTTGATTTTC 59.060 40.000 0.00 0.00 0.00 2.29
1626 1793 9.243105 TCTTTGATTTTCCATAGGAGTTTTAGG 57.757 33.333 0.00 0.00 31.21 2.69
1629 1796 4.873724 TTTCCATAGGAGTTTTAGGGGG 57.126 45.455 0.00 0.00 31.21 5.40
1633 1800 3.526019 CCATAGGAGTTTTAGGGGGTTGA 59.474 47.826 0.00 0.00 0.00 3.18
1634 1801 4.524053 CATAGGAGTTTTAGGGGGTTGAC 58.476 47.826 0.00 0.00 0.00 3.18
1637 1804 2.290768 GGAGTTTTAGGGGGTTGACTCC 60.291 54.545 4.76 4.76 44.26 3.85
1652 1819 4.569719 TGACTCCTTAAGGATTTCCCAC 57.430 45.455 24.48 7.51 44.46 4.61
1662 1829 2.039746 AGGATTTCCCACACGTTCATCA 59.960 45.455 0.00 0.00 37.41 3.07
1672 1839 5.815222 CCCACACGTTCATCACTCATATAAA 59.185 40.000 0.00 0.00 0.00 1.40
1702 2438 6.515272 TGAAGGAAGTAGCATTTTGAATCC 57.485 37.500 0.00 0.00 0.00 3.01
1722 2458 4.016444 TCCAGTTATCATGCCAAACTTCC 58.984 43.478 4.90 0.00 31.21 3.46
1847 2773 2.756760 GCCTGCAAGAAATCTCCATCAA 59.243 45.455 0.00 0.00 34.07 2.57
1856 2782 8.555361 GCAAGAAATCTCCATCAAGATAGTAAC 58.445 37.037 0.00 0.00 34.90 2.50
1878 2804 2.537143 TCCCCTAAGGACTCTGAACAC 58.463 52.381 0.00 0.00 40.93 3.32
1879 2805 2.158219 TCCCCTAAGGACTCTGAACACA 60.158 50.000 0.00 0.00 40.93 3.72
1880 2806 2.840651 CCCCTAAGGACTCTGAACACAT 59.159 50.000 0.00 0.00 38.24 3.21
1887 2814 2.257894 GACTCTGAACACATGCTCTCG 58.742 52.381 0.00 0.00 0.00 4.04
1903 2830 0.036010 CTCGGGCTTGTCAATCAGGT 60.036 55.000 0.00 0.00 0.00 4.00
1911 2838 0.251253 TGTCAATCAGGTGCCATGCA 60.251 50.000 0.00 0.00 35.60 3.96
1919 2846 1.153784 GGTGCCATGCATGTTTCGG 60.154 57.895 24.58 10.66 41.91 4.30
1924 2851 0.813184 CCATGCATGTTTCGGAAGCT 59.187 50.000 24.58 0.00 0.00 3.74
1925 2852 1.203052 CCATGCATGTTTCGGAAGCTT 59.797 47.619 24.58 0.00 0.00 3.74
1926 2853 2.423185 CCATGCATGTTTCGGAAGCTTA 59.577 45.455 24.58 0.00 0.00 3.09
1940 2867 3.887716 GGAAGCTTAGCATCATTGGACAT 59.112 43.478 11.57 0.00 0.00 3.06
1956 2883 4.416516 TGGACATCTGTAGGTCTCAGAAA 58.583 43.478 0.00 0.00 43.65 2.52
1965 2892 0.962855 GGTCTCAGAAAGCCAAGCCC 60.963 60.000 0.00 0.00 0.00 5.19
1986 2913 1.512926 CCCTTCGCCTTTGATATCGG 58.487 55.000 0.00 0.00 0.00 4.18
2006 2933 1.407851 GCATCTTCTCCCATGACTGCA 60.408 52.381 0.00 0.00 0.00 4.41
2064 3001 4.307432 ACATAACTGTCGTCACTTTCTGG 58.693 43.478 0.00 0.00 0.00 3.86
2151 3123 0.620556 CACAGTATCCCTGCACCCTT 59.379 55.000 0.00 0.00 45.68 3.95
2166 3138 0.033228 CCCTTGATCTAGCCTGCTCG 59.967 60.000 0.00 0.00 0.00 5.03
2188 3160 4.675114 CGCGGTAATGAATAAAATTCTGCC 59.325 41.667 0.00 0.00 0.00 4.85
2190 3162 5.528870 CGGTAATGAATAAAATTCTGCCCC 58.471 41.667 1.70 0.00 0.00 5.80
2263 3235 5.353678 GCTTCTCTATGAATCTGCAAGTTGT 59.646 40.000 4.48 0.00 33.71 3.32
2292 3264 4.864334 GCCCTCACAGATGCCCCG 62.864 72.222 0.00 0.00 0.00 5.73
2309 3281 2.345876 CCCGCAATTTGGGCTAAAAAG 58.654 47.619 7.88 0.00 40.47 2.27
2310 3282 1.731709 CCGCAATTTGGGCTAAAAAGC 59.268 47.619 7.88 6.70 0.00 3.51
2319 3291 4.782019 TGGGCTAAAAAGCACATAACTG 57.218 40.909 0.00 0.00 44.12 3.16
2329 3301 3.081804 AGCACATAACTGTTGGCCTTAC 58.918 45.455 3.32 2.54 31.62 2.34
2339 3311 4.345837 ACTGTTGGCCTTACTAACACACTA 59.654 41.667 3.32 0.00 43.97 2.74
2466 3439 3.100207 TCCATGGGGATTTCAAACCTC 57.900 47.619 13.02 0.00 38.64 3.85
2482 3455 1.233019 CCTCGCCAAATGCCTCTATG 58.767 55.000 0.00 0.00 36.24 2.23
2518 3491 6.489022 CCATCATAATTCTTGAGAAGGCATGA 59.511 38.462 0.00 12.88 37.48 3.07
2531 3504 0.555769 GGCATGATAACCCTTCCCCA 59.444 55.000 0.00 0.00 0.00 4.96
2548 3521 4.803452 TCCCCACAAAACAGAAAGAGATT 58.197 39.130 0.00 0.00 0.00 2.40
2549 3522 4.584325 TCCCCACAAAACAGAAAGAGATTG 59.416 41.667 0.00 0.00 0.00 2.67
2574 3549 3.054655 GGAGTGGGTCACTTTGCCTTATA 60.055 47.826 1.90 0.00 45.44 0.98
2601 3576 7.374975 TCTAGAAGGGTAAAATGATGGTAGG 57.625 40.000 0.00 0.00 0.00 3.18
2643 3618 5.368256 CTTGAAAAGTCCTTCATGACCAG 57.632 43.478 0.00 0.00 39.70 4.00
2644 3619 4.705110 TGAAAAGTCCTTCATGACCAGA 57.295 40.909 0.00 0.00 35.83 3.86
2645 3620 4.645535 TGAAAAGTCCTTCATGACCAGAG 58.354 43.478 0.00 0.00 35.83 3.35
2646 3621 4.347876 TGAAAAGTCCTTCATGACCAGAGA 59.652 41.667 0.00 0.00 35.83 3.10
2647 3622 3.971245 AAGTCCTTCATGACCAGAGAC 57.029 47.619 0.00 1.85 35.83 3.36
2648 3623 1.821753 AGTCCTTCATGACCAGAGACG 59.178 52.381 0.00 0.00 35.83 4.18
2649 3624 0.532573 TCCTTCATGACCAGAGACGC 59.467 55.000 0.00 0.00 0.00 5.19
2650 3625 0.460987 CCTTCATGACCAGAGACGCC 60.461 60.000 0.00 0.00 0.00 5.68
2651 3626 0.460987 CTTCATGACCAGAGACGCCC 60.461 60.000 0.00 0.00 0.00 6.13
2652 3627 1.191489 TTCATGACCAGAGACGCCCA 61.191 55.000 0.00 0.00 0.00 5.36
2653 3628 1.191489 TCATGACCAGAGACGCCCAA 61.191 55.000 0.00 0.00 0.00 4.12
2654 3629 0.321564 CATGACCAGAGACGCCCAAA 60.322 55.000 0.00 0.00 0.00 3.28
2655 3630 0.321653 ATGACCAGAGACGCCCAAAC 60.322 55.000 0.00 0.00 0.00 2.93
2656 3631 1.371558 GACCAGAGACGCCCAAACT 59.628 57.895 0.00 0.00 0.00 2.66
2657 3632 0.250338 GACCAGAGACGCCCAAACTT 60.250 55.000 0.00 0.00 0.00 2.66
2658 3633 0.250338 ACCAGAGACGCCCAAACTTC 60.250 55.000 0.00 0.00 0.00 3.01
2659 3634 0.250295 CCAGAGACGCCCAAACTTCA 60.250 55.000 0.00 0.00 0.00 3.02
2660 3635 1.151668 CAGAGACGCCCAAACTTCAG 58.848 55.000 0.00 0.00 0.00 3.02
2661 3636 0.035458 AGAGACGCCCAAACTTCAGG 59.965 55.000 0.00 0.00 0.00 3.86
2662 3637 0.034896 GAGACGCCCAAACTTCAGGA 59.965 55.000 0.00 0.00 0.00 3.86
2663 3638 0.472471 AGACGCCCAAACTTCAGGAA 59.528 50.000 0.00 0.00 0.00 3.36
2664 3639 1.133915 AGACGCCCAAACTTCAGGAAA 60.134 47.619 0.00 0.00 0.00 3.13
2665 3640 1.679153 GACGCCCAAACTTCAGGAAAA 59.321 47.619 0.00 0.00 0.00 2.29
2666 3641 2.100087 GACGCCCAAACTTCAGGAAAAA 59.900 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 9.727859 CTCTTACTAGCTCCAGACACTATAATA 57.272 37.037 0.00 0.00 0.00 0.98
31 33 4.707448 TGTTCTTCCTCTTACTAGCTCCAG 59.293 45.833 0.00 0.00 0.00 3.86
34 36 6.921307 GCTTATGTTCTTCCTCTTACTAGCTC 59.079 42.308 0.00 0.00 0.00 4.09
92 94 4.162690 AAGATCAGCGGGACCGGC 62.163 66.667 15.93 15.93 40.19 6.13
93 95 2.107141 GAAGATCAGCGGGACCGG 59.893 66.667 13.21 0.00 40.19 5.28
94 96 2.032860 ATGGAAGATCAGCGGGACCG 62.033 60.000 6.35 6.35 43.09 4.79
95 97 0.250081 GATGGAAGATCAGCGGGACC 60.250 60.000 0.00 0.00 0.00 4.46
96 98 0.465705 TGATGGAAGATCAGCGGGAC 59.534 55.000 0.00 0.00 0.00 4.46
97 99 1.427809 ATGATGGAAGATCAGCGGGA 58.572 50.000 0.00 0.00 0.00 5.14
98 100 2.149578 GAATGATGGAAGATCAGCGGG 58.850 52.381 0.00 0.00 0.00 6.13
99 101 3.123157 AGAATGATGGAAGATCAGCGG 57.877 47.619 0.00 0.00 0.00 5.52
100 102 6.426025 TCATAAAGAATGATGGAAGATCAGCG 59.574 38.462 0.00 0.00 39.77 5.18
101 103 7.741027 TCATAAAGAATGATGGAAGATCAGC 57.259 36.000 0.00 0.00 39.77 4.26
148 150 5.250200 TGTGGTCGCCTTGTTATTAATTCT 58.750 37.500 0.00 0.00 0.00 2.40
153 155 3.075884 GGTTGTGGTCGCCTTGTTATTA 58.924 45.455 0.00 0.00 0.00 0.98
167 169 2.027460 GCAAACGGCAGGTTGTGG 59.973 61.111 16.11 0.00 46.39 4.17
171 173 1.512156 CCTAACGCAAACGGCAGGTT 61.512 55.000 0.00 0.00 46.04 3.50
174 176 1.206578 CACCTAACGCAAACGGCAG 59.793 57.895 0.00 0.00 46.04 4.85
177 179 1.206578 CTGCACCTAACGCAAACGG 59.793 57.895 0.00 0.00 46.04 4.44
185 187 0.107654 AGATTCGGCCTGCACCTAAC 60.108 55.000 0.00 0.00 0.00 2.34
198 200 1.726853 AGCTTTGGAACCGAGATTCG 58.273 50.000 0.00 0.00 40.07 3.34
218 220 4.507756 GTGTATAGATGTCATCGCTGCAAA 59.492 41.667 7.18 0.00 0.00 3.68
219 221 4.051237 GTGTATAGATGTCATCGCTGCAA 58.949 43.478 7.18 0.00 0.00 4.08
225 227 7.821652 AGTTATCTGGTGTATAGATGTCATCG 58.178 38.462 7.18 0.00 36.38 3.84
228 230 8.768501 AAGAGTTATCTGGTGTATAGATGTCA 57.231 34.615 0.00 0.00 36.38 3.58
240 242 9.566432 GATTCAATCCATAAAGAGTTATCTGGT 57.434 33.333 0.00 0.00 35.37 4.00
255 257 2.301346 GGTCCGCAAGATTCAATCCAT 58.699 47.619 0.00 0.00 43.02 3.41
256 258 1.681780 GGGTCCGCAAGATTCAATCCA 60.682 52.381 0.00 0.00 43.02 3.41
265 267 1.682684 GAGAGAGGGGTCCGCAAGA 60.683 63.158 8.89 0.00 43.02 3.02
269 271 2.363147 ACTGAGAGAGGGGTCCGC 60.363 66.667 0.00 0.00 0.00 5.54
271 273 0.396556 GGAGACTGAGAGAGGGGTCC 60.397 65.000 0.00 0.00 0.00 4.46
293 295 8.632731 TGGTTAGAAATAGGGGAGAAAGATTA 57.367 34.615 0.00 0.00 0.00 1.75
300 302 4.658901 GTCCATGGTTAGAAATAGGGGAGA 59.341 45.833 12.58 0.00 0.00 3.71
314 316 0.621862 GGGAGGAGAGGTCCATGGTT 60.622 60.000 12.58 0.00 46.80 3.67
362 364 8.677148 AAGAAACAGTCAGATTTAGCAGTTAA 57.323 30.769 0.00 0.00 0.00 2.01
366 368 5.855395 GCAAAGAAACAGTCAGATTTAGCAG 59.145 40.000 0.00 0.00 0.00 4.24
397 399 4.822350 TGATCAGGGTCTCTTATGTACGAG 59.178 45.833 0.00 0.00 0.00 4.18
400 402 6.909550 AGATGATCAGGGTCTCTTATGTAC 57.090 41.667 0.09 0.00 0.00 2.90
406 408 6.201591 AGAAGTTAGATGATCAGGGTCTCTT 58.798 40.000 0.09 0.45 0.00 2.85
422 424 7.581600 GCGTTTGTACTGTGTTAAAGAAGTTAG 59.418 37.037 0.00 0.00 0.00 2.34
423 425 7.064371 TGCGTTTGTACTGTGTTAAAGAAGTTA 59.936 33.333 0.00 0.00 0.00 2.24
425 427 5.352016 TGCGTTTGTACTGTGTTAAAGAAGT 59.648 36.000 0.00 0.00 0.00 3.01
426 428 5.802064 TGCGTTTGTACTGTGTTAAAGAAG 58.198 37.500 0.00 0.00 0.00 2.85
429 431 5.195379 GTCTGCGTTTGTACTGTGTTAAAG 58.805 41.667 0.00 0.00 0.00 1.85
447 449 1.487482 TCGTATGCATTAGCGTCTGC 58.513 50.000 3.54 1.14 46.23 4.26
456 458 6.818644 GGGATGAGTATATGTTCGTATGCATT 59.181 38.462 3.54 0.00 0.00 3.56
458 460 5.480422 AGGGATGAGTATATGTTCGTATGCA 59.520 40.000 0.00 0.00 0.00 3.96
459 461 5.967088 AGGGATGAGTATATGTTCGTATGC 58.033 41.667 0.00 0.00 0.00 3.14
465 467 7.044798 GCCTTCATAGGGATGAGTATATGTTC 58.955 42.308 0.00 0.00 43.03 3.18
466 468 6.501805 TGCCTTCATAGGGATGAGTATATGTT 59.498 38.462 0.00 0.00 43.03 2.71
478 480 0.179048 CATGCGTGCCTTCATAGGGA 60.179 55.000 0.00 0.00 42.25 4.20
493 495 2.196997 TAGGGGTGAGGTGTGCATGC 62.197 60.000 11.82 11.82 0.00 4.06
504 506 1.204146 GAAGGTGCTCATAGGGGTGA 58.796 55.000 0.00 0.00 0.00 4.02
505 507 0.179073 CGAAGGTGCTCATAGGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
526 528 4.246458 GTGTTCAGTGGTAGGAGACATTC 58.754 47.826 0.00 0.00 0.00 2.67
538 598 1.001048 CTGGCAATGTGTGTTCAGTGG 60.001 52.381 0.00 0.00 34.58 4.00
547 607 0.963962 CAGGCTTTCTGGCAATGTGT 59.036 50.000 0.00 0.00 44.55 3.72
553 613 5.072741 GGATATATTTCAGGCTTTCTGGCA 58.927 41.667 0.00 0.00 43.53 4.92
557 617 9.479549 TTTTTCTGGATATATTTCAGGCTTTCT 57.520 29.630 13.57 0.00 0.00 2.52
561 621 7.288389 TGCATTTTTCTGGATATATTTCAGGCT 59.712 33.333 13.57 0.00 0.00 4.58
562 622 7.436118 TGCATTTTTCTGGATATATTTCAGGC 58.564 34.615 13.57 9.87 0.00 4.85
563 623 9.991906 ATTGCATTTTTCTGGATATATTTCAGG 57.008 29.630 13.57 2.80 0.00 3.86
570 630 7.894753 TGGTCATTGCATTTTTCTGGATATA 57.105 32.000 0.00 0.00 0.00 0.86
572 632 6.602410 TTGGTCATTGCATTTTTCTGGATA 57.398 33.333 0.00 0.00 0.00 2.59
575 635 4.998672 ACATTGGTCATTGCATTTTTCTGG 59.001 37.500 0.00 0.00 0.00 3.86
598 658 3.515502 CCAGGTTCATGTCCTAGACTTGA 59.484 47.826 10.75 8.71 42.28 3.02
599 659 3.261897 ACCAGGTTCATGTCCTAGACTTG 59.738 47.826 10.75 4.67 38.51 3.16
600 660 3.261897 CACCAGGTTCATGTCCTAGACTT 59.738 47.826 10.75 0.00 33.54 3.01
625 685 7.093465 TGGTTAAAAGGACAGTGGTATCTCTAG 60.093 40.741 0.00 0.00 0.00 2.43
629 689 5.836024 TGGTTAAAAGGACAGTGGTATCT 57.164 39.130 0.00 0.00 0.00 1.98
630 690 5.589050 GGATGGTTAAAAGGACAGTGGTATC 59.411 44.000 0.00 0.00 0.00 2.24
638 698 4.186077 TGGTTGGATGGTTAAAAGGACA 57.814 40.909 0.00 0.00 0.00 4.02
639 699 6.379988 ACATATGGTTGGATGGTTAAAAGGAC 59.620 38.462 7.80 0.00 0.00 3.85
640 700 6.498538 ACATATGGTTGGATGGTTAAAAGGA 58.501 36.000 7.80 0.00 0.00 3.36
641 701 6.790232 ACATATGGTTGGATGGTTAAAAGG 57.210 37.500 7.80 0.00 0.00 3.11
673 733 7.566760 TGCTTTCAGTTAGATGTTCAAGAAA 57.433 32.000 0.00 0.00 0.00 2.52
674 734 7.566760 TTGCTTTCAGTTAGATGTTCAAGAA 57.433 32.000 0.00 0.00 0.00 2.52
677 737 7.147312 CCATTTGCTTTCAGTTAGATGTTCAA 58.853 34.615 0.00 0.00 0.00 2.69
681 741 5.047802 CACCCATTTGCTTTCAGTTAGATGT 60.048 40.000 0.00 0.00 0.00 3.06
697 757 9.496873 CATGCAATTGATAAATATCACCCATTT 57.503 29.630 10.34 0.00 42.00 2.32
841 938 3.181461 TGTGTGTGTCATCATGGTGTGTA 60.181 43.478 5.73 0.00 0.00 2.90
886 1004 2.222596 CGTGCTCGTACTTTTGATCAGC 60.223 50.000 0.00 0.00 0.00 4.26
1026 1161 3.192844 CGGTCTGTAGTTTGAGCTTCCTA 59.807 47.826 0.00 0.00 0.00 2.94
1027 1162 2.028930 CGGTCTGTAGTTTGAGCTTCCT 60.029 50.000 0.00 0.00 0.00 3.36
1028 1163 2.029290 TCGGTCTGTAGTTTGAGCTTCC 60.029 50.000 0.00 0.00 0.00 3.46
1029 1164 3.299340 TCGGTCTGTAGTTTGAGCTTC 57.701 47.619 0.00 0.00 0.00 3.86
1030 1165 3.963428 ATCGGTCTGTAGTTTGAGCTT 57.037 42.857 0.00 0.00 0.00 3.74
1175 1338 4.087892 AGAACGCTGCCGATGCCT 62.088 61.111 0.00 0.00 38.29 4.75
1264 1427 2.742372 CCCTCTCCGGTTGTTGCG 60.742 66.667 0.00 0.00 0.00 4.85
1269 1432 1.889530 GACTGGTCCCTCTCCGGTTG 61.890 65.000 0.00 0.00 43.64 3.77
1295 1462 2.430367 GGTTCCCGTGGAAGTGCT 59.570 61.111 5.71 0.00 42.88 4.40
1490 1657 0.469892 TGTGAGACCAGAGCCACTCA 60.470 55.000 0.00 0.00 37.11 3.41
1538 1705 2.203337 GGCACAGTGGAGGCAACA 60.203 61.111 1.84 0.00 41.41 3.33
1540 1707 4.641645 CCGGCACAGTGGAGGCAA 62.642 66.667 1.84 0.00 0.00 4.52
1562 1729 4.389576 GCACGGGCAGCAACTTCG 62.390 66.667 3.77 0.00 40.72 3.79
1571 1738 1.096967 CAGATTGCATAGCACGGGCA 61.097 55.000 14.57 0.00 44.61 5.36
1592 1759 6.264067 CCTATGGAAAATCAAAGAAGCCCTAG 59.736 42.308 0.00 0.00 0.00 3.02
1611 1778 3.526019 TCAACCCCCTAAAACTCCTATGG 59.474 47.826 0.00 0.00 0.00 2.74
1637 1804 4.069304 TGAACGTGTGGGAAATCCTTAAG 58.931 43.478 0.00 0.00 36.20 1.85
1652 1819 7.919690 ACCATTTTATATGAGTGATGAACGTG 58.080 34.615 0.00 0.00 0.00 4.49
1662 1829 9.533831 ACTTCCTTCAAACCATTTTATATGAGT 57.466 29.630 0.00 0.00 0.00 3.41
1672 1839 6.670695 AAATGCTACTTCCTTCAAACCATT 57.329 33.333 0.00 0.00 0.00 3.16
1683 2419 5.904362 ACTGGATTCAAAATGCTACTTCC 57.096 39.130 0.00 0.00 0.00 3.46
1702 2438 3.440173 ACGGAAGTTTGGCATGATAACTG 59.560 43.478 0.00 0.00 46.40 3.16
1722 2458 2.878406 AGTTGGAGATGGTTTGACAACG 59.122 45.455 0.00 0.00 42.03 4.10
1847 2773 4.803329 TCCTTAGGGGACGTTACTATCT 57.197 45.455 0.00 0.00 39.58 1.98
1871 2797 1.364626 GCCCGAGAGCATGTGTTCAG 61.365 60.000 0.00 0.00 0.00 3.02
1872 2798 1.375908 GCCCGAGAGCATGTGTTCA 60.376 57.895 0.00 0.00 0.00 3.18
1873 2799 0.674895 AAGCCCGAGAGCATGTGTTC 60.675 55.000 0.00 0.00 34.23 3.18
1874 2800 0.957395 CAAGCCCGAGAGCATGTGTT 60.957 55.000 0.00 0.00 34.23 3.32
1875 2801 1.376424 CAAGCCCGAGAGCATGTGT 60.376 57.895 0.00 0.00 34.23 3.72
1876 2802 1.364626 GACAAGCCCGAGAGCATGTG 61.365 60.000 7.47 0.15 44.12 3.21
1877 2803 1.078848 GACAAGCCCGAGAGCATGT 60.079 57.895 3.21 3.21 46.53 3.21
1878 2804 0.674581 TTGACAAGCCCGAGAGCATG 60.675 55.000 0.00 0.00 37.48 4.06
1879 2805 0.254178 ATTGACAAGCCCGAGAGCAT 59.746 50.000 0.00 0.00 34.23 3.79
1880 2806 0.391661 GATTGACAAGCCCGAGAGCA 60.392 55.000 0.00 0.00 34.23 4.26
1887 2814 1.598701 GGCACCTGATTGACAAGCCC 61.599 60.000 0.13 0.00 36.02 5.19
1903 2830 0.527113 CTTCCGAAACATGCATGGCA 59.473 50.000 29.41 1.85 44.86 4.92
1911 2838 3.609853 TGATGCTAAGCTTCCGAAACAT 58.390 40.909 0.00 0.00 32.74 2.71
1919 2846 4.820716 AGATGTCCAATGATGCTAAGCTTC 59.179 41.667 0.00 0.00 34.04 3.86
1924 2851 5.130975 ACCTACAGATGTCCAATGATGCTAA 59.869 40.000 0.00 0.00 0.00 3.09
1925 2852 4.655649 ACCTACAGATGTCCAATGATGCTA 59.344 41.667 0.00 0.00 0.00 3.49
1926 2853 3.457380 ACCTACAGATGTCCAATGATGCT 59.543 43.478 0.00 0.00 0.00 3.79
1940 2867 2.889512 TGGCTTTCTGAGACCTACAGA 58.110 47.619 0.00 0.00 41.70 3.41
1965 2892 0.868406 GATATCAAAGGCGAAGGGCG 59.132 55.000 0.00 0.00 44.92 6.13
1975 2902 3.999663 GGGAGAAGATGCCGATATCAAAG 59.000 47.826 3.12 0.00 0.00 2.77
1986 2913 1.307097 GCAGTCATGGGAGAAGATGC 58.693 55.000 0.00 0.00 0.00 3.91
2006 2933 3.074538 ACTTACAAGAGGGGAATGCACTT 59.925 43.478 0.00 0.00 0.00 3.16
2052 2989 2.813779 GCTTATGCCAGAAAGTGACG 57.186 50.000 0.00 0.00 0.00 4.35
2064 3001 3.057315 TCAAGCTCACAAAAGGCTTATGC 60.057 43.478 0.00 0.00 43.28 3.14
2091 3028 4.385748 GCGGCAAAATTGGTTCTTCTTAAG 59.614 41.667 0.00 0.00 0.00 1.85
2151 3123 2.724377 CGCGAGCAGGCTAGATCA 59.276 61.111 0.00 0.00 0.00 2.92
2166 3138 4.982295 GGGCAGAATTTTATTCATTACCGC 59.018 41.667 2.60 0.00 0.00 5.68
2188 3160 0.037605 GCGACGGGTAGGATTATGGG 60.038 60.000 0.00 0.00 0.00 4.00
2190 3162 3.509388 GGCGACGGGTAGGATTATG 57.491 57.895 0.00 0.00 0.00 1.90
2263 3235 1.007118 TGTGAGGGCAGGAGTCAGATA 59.993 52.381 0.00 0.00 0.00 1.98
2292 3264 3.137533 TGTGCTTTTTAGCCCAAATTGC 58.862 40.909 0.00 0.00 0.00 3.56
2304 3276 3.387699 AGGCCAACAGTTATGTGCTTTTT 59.612 39.130 5.01 0.00 40.39 1.94
2309 3281 3.081804 AGTAAGGCCAACAGTTATGTGC 58.918 45.455 5.01 0.00 40.39 4.57
2310 3282 5.703592 TGTTAGTAAGGCCAACAGTTATGTG 59.296 40.000 5.01 0.00 40.39 3.21
2313 3285 5.704053 GTGTGTTAGTAAGGCCAACAGTTAT 59.296 40.000 5.01 0.00 33.10 1.89
2314 3286 5.058490 GTGTGTTAGTAAGGCCAACAGTTA 58.942 41.667 5.01 0.00 33.10 2.24
2319 3291 4.453478 GGTTAGTGTGTTAGTAAGGCCAAC 59.547 45.833 5.01 2.07 0.00 3.77
2329 3301 2.301870 TGGGCTCTGGTTAGTGTGTTAG 59.698 50.000 0.00 0.00 0.00 2.34
2339 3311 3.203040 AGCATATAGTTTGGGCTCTGGTT 59.797 43.478 0.00 0.00 0.00 3.67
2432 3405 5.092968 TCCCCATGGATTTCACATCTTTTT 58.907 37.500 15.22 0.00 35.03 1.94
2466 3439 1.334869 GGTTCATAGAGGCATTTGGCG 59.665 52.381 0.00 0.00 46.16 5.69
2482 3455 5.388654 AGAATTATGATGGTGGATGGGTTC 58.611 41.667 0.00 0.00 0.00 3.62
2518 3491 3.141272 TCTGTTTTGTGGGGAAGGGTTAT 59.859 43.478 0.00 0.00 0.00 1.89
2531 3504 3.897505 CCCCCAATCTCTTTCTGTTTTGT 59.102 43.478 0.00 0.00 0.00 2.83
2548 3521 1.386772 AAAGTGACCCACTCCCCCA 60.387 57.895 0.00 0.00 44.62 4.96
2549 3522 1.074951 CAAAGTGACCCACTCCCCC 59.925 63.158 0.00 0.00 44.62 5.40
2564 3539 5.286221 ACCCTTCTAGAGGTATAAGGCAAA 58.714 41.667 1.85 0.00 44.71 3.68
2574 3549 5.731678 ACCATCATTTTACCCTTCTAGAGGT 59.268 40.000 8.60 8.60 44.71 3.85
2587 3562 4.141574 CGGGGAACTCCTACCATCATTTTA 60.142 45.833 0.00 0.00 35.95 1.52
2601 3576 4.203654 AGTTAAGATGAACGGGGAACTC 57.796 45.455 0.00 0.00 34.36 3.01
2632 3607 0.460987 GGGCGTCTCTGGTCATGAAG 60.461 60.000 0.00 0.00 0.00 3.02
2633 3608 1.191489 TGGGCGTCTCTGGTCATGAA 61.191 55.000 0.00 0.00 0.00 2.57
2634 3609 1.191489 TTGGGCGTCTCTGGTCATGA 61.191 55.000 0.00 0.00 0.00 3.07
2635 3610 0.321564 TTTGGGCGTCTCTGGTCATG 60.322 55.000 0.00 0.00 0.00 3.07
2636 3611 0.321653 GTTTGGGCGTCTCTGGTCAT 60.322 55.000 0.00 0.00 0.00 3.06
2637 3612 1.070786 GTTTGGGCGTCTCTGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
2638 3613 0.250338 AAGTTTGGGCGTCTCTGGTC 60.250 55.000 0.00 0.00 0.00 4.02
2639 3614 0.250338 GAAGTTTGGGCGTCTCTGGT 60.250 55.000 0.00 0.00 0.00 4.00
2640 3615 0.250295 TGAAGTTTGGGCGTCTCTGG 60.250 55.000 0.00 0.00 0.00 3.86
2641 3616 1.151668 CTGAAGTTTGGGCGTCTCTG 58.848 55.000 0.00 0.00 0.00 3.35
2642 3617 0.035458 CCTGAAGTTTGGGCGTCTCT 59.965 55.000 0.00 0.00 0.00 3.10
2643 3618 0.034896 TCCTGAAGTTTGGGCGTCTC 59.965 55.000 0.00 0.00 0.00 3.36
2644 3619 0.472471 TTCCTGAAGTTTGGGCGTCT 59.528 50.000 0.00 0.00 0.00 4.18
2645 3620 1.314730 TTTCCTGAAGTTTGGGCGTC 58.685 50.000 0.00 0.00 0.00 5.19
2646 3621 1.770294 TTTTCCTGAAGTTTGGGCGT 58.230 45.000 0.00 0.00 0.00 5.68
2647 3622 2.880963 TTTTTCCTGAAGTTTGGGCG 57.119 45.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.