Multiple sequence alignment - TraesCS7D01G547000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G547000 chr7D 100.000 2726 0 0 1 2726 633452983 633455708 0.000000e+00 5035
1 TraesCS7D01G547000 chr7D 100.000 612 0 0 2115 2726 633440357 633440968 0.000000e+00 1131
2 TraesCS7D01G547000 chr7D 85.249 583 78 7 1076 1654 633576161 633576739 6.500000e-166 593
3 TraesCS7D01G547000 chr7B 82.260 1336 150 46 529 1814 749492388 749493686 0.000000e+00 1074
4 TraesCS7D01G547000 chr7B 87.746 865 85 13 945 1806 749490090 749490936 0.000000e+00 990
5 TraesCS7D01G547000 chr7B 85.891 567 74 5 1091 1654 749843058 749842495 1.400000e-167 599
6 TraesCS7D01G547000 chr7B 85.897 234 15 6 340 555 749477129 749477362 1.630000e-57 233
7 TraesCS7D01G547000 chr7B 79.856 278 43 10 629 895 749489800 749490075 9.960000e-45 191
8 TraesCS7D01G547000 chr7B 93.182 88 6 0 8 95 749489184 749489271 2.200000e-26 130
9 TraesCS7D01G547000 chr3B 76.132 574 108 14 844 1404 51099905 51100462 9.620000e-70 274
10 TraesCS7D01G547000 chr3B 85.135 222 19 4 1412 1632 51105131 51105339 5.910000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G547000 chr7D 633452983 633455708 2725 False 5035.00 5035 100.000 1 2726 1 chr7D.!!$F2 2725
1 TraesCS7D01G547000 chr7D 633440357 633440968 611 False 1131.00 1131 100.000 2115 2726 1 chr7D.!!$F1 611
2 TraesCS7D01G547000 chr7D 633576161 633576739 578 False 593.00 593 85.249 1076 1654 1 chr7D.!!$F3 578
3 TraesCS7D01G547000 chr7B 749842495 749843058 563 True 599.00 599 85.891 1091 1654 1 chr7B.!!$R1 563
4 TraesCS7D01G547000 chr7B 749489184 749493686 4502 False 596.25 1074 85.761 8 1814 4 chr7B.!!$F2 1806
5 TraesCS7D01G547000 chr3B 51099905 51100462 557 False 274.00 274 76.132 844 1404 1 chr3B.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 639 0.104855 TGCGACAGAGCTTTCACACT 59.895 50.0 0.00 0.00 38.13 3.55 F
575 713 0.106819 ATCCATCCAAGACTGCAGGC 60.107 55.0 19.93 16.91 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 1880 0.179009 CACATCTAGGGCATGGTGGG 60.179 60.0 0.0 0.0 0.00 4.61 R
1924 2106 0.392998 AAGCATACACCCGGCTTCTG 60.393 55.0 0.0 0.0 43.97 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.632420 AGTTATTAGGACCCCCGATCT 57.368 47.619 0.00 0.00 37.58 2.75
64 65 2.700897 CCCCGATCTATCCAAGTCTTGT 59.299 50.000 11.61 0.00 0.00 3.16
84 85 1.767088 TCTTGGCTGATCTGGATCCAG 59.233 52.381 32.60 32.60 44.86 3.86
155 227 5.452255 AGGATTAGGATGTGCATTGATTGT 58.548 37.500 0.00 0.00 0.00 2.71
159 231 6.778834 TTAGGATGTGCATTGATTGTTGAT 57.221 33.333 0.00 0.00 0.00 2.57
160 232 5.258456 AGGATGTGCATTGATTGTTGATC 57.742 39.130 0.00 0.00 35.21 2.92
199 271 2.045634 TCGTCCGTCGACCCTCAT 60.046 61.111 10.58 0.00 44.01 2.90
203 275 1.303806 TCCGTCGACCCTCATGTGA 60.304 57.895 10.58 0.00 0.00 3.58
205 277 1.153823 CGTCGACCCTCATGTGACC 60.154 63.158 10.58 0.00 0.00 4.02
206 278 1.595993 CGTCGACCCTCATGTGACCT 61.596 60.000 10.58 0.00 0.00 3.85
221 309 1.822371 TGACCTACGTCATGCTTAGCA 59.178 47.619 10.09 10.09 44.20 3.49
223 311 2.860735 GACCTACGTCATGCTTAGCAAG 59.139 50.000 12.08 7.13 43.62 4.01
225 313 3.056107 ACCTACGTCATGCTTAGCAAGAA 60.056 43.478 13.81 0.00 43.62 2.52
226 314 4.122776 CCTACGTCATGCTTAGCAAGAAT 58.877 43.478 13.81 8.01 43.62 2.40
227 315 4.572389 CCTACGTCATGCTTAGCAAGAATT 59.428 41.667 13.81 6.51 43.62 2.17
247 335 7.829725 AGAATTGTTATAATTTGCACAGCTCA 58.170 30.769 0.00 0.00 0.00 4.26
249 337 4.985413 TGTTATAATTTGCACAGCTCAGC 58.015 39.130 0.00 0.00 0.00 4.26
251 339 5.125900 TGTTATAATTTGCACAGCTCAGCAT 59.874 36.000 10.15 0.00 40.94 3.79
252 340 2.649331 AATTTGCACAGCTCAGCATC 57.351 45.000 10.15 0.00 40.94 3.91
253 341 1.541379 ATTTGCACAGCTCAGCATCA 58.459 45.000 10.15 1.89 40.94 3.07
255 343 0.808755 TTGCACAGCTCAGCATCATG 59.191 50.000 10.15 0.00 40.94 3.07
256 344 1.029947 TGCACAGCTCAGCATCATGG 61.030 55.000 0.00 0.00 35.51 3.66
274 411 3.637911 TGGTACATTATTGGCGAACCT 57.362 42.857 0.00 0.00 36.63 3.50
280 417 6.707161 GGTACATTATTGGCGAACCTGTATAA 59.293 38.462 0.00 0.00 36.63 0.98
295 432 7.881775 ACCTGTATAAATTGATTCCTTGGAC 57.118 36.000 0.00 0.00 0.00 4.02
296 433 7.410174 ACCTGTATAAATTGATTCCTTGGACA 58.590 34.615 0.00 0.00 0.00 4.02
297 434 7.893302 ACCTGTATAAATTGATTCCTTGGACAA 59.107 33.333 0.00 0.00 0.00 3.18
299 436 9.956720 CTGTATAAATTGATTCCTTGGACAATC 57.043 33.333 6.13 1.54 32.84 2.67
300 437 8.912988 TGTATAAATTGATTCCTTGGACAATCC 58.087 33.333 6.13 0.00 36.96 3.01
301 438 4.989279 AATTGATTCCTTGGACAATCCG 57.011 40.909 6.13 0.00 40.17 4.18
303 440 4.561500 TTGATTCCTTGGACAATCCGTA 57.438 40.909 0.00 0.00 40.17 4.02
304 441 3.869065 TGATTCCTTGGACAATCCGTAC 58.131 45.455 0.00 0.00 40.17 3.67
305 442 3.262151 TGATTCCTTGGACAATCCGTACA 59.738 43.478 0.00 0.00 40.17 2.90
306 443 3.992943 TTCCTTGGACAATCCGTACAT 57.007 42.857 0.00 0.00 38.63 2.29
307 444 3.992943 TCCTTGGACAATCCGTACATT 57.007 42.857 0.00 0.00 38.63 2.71
308 445 5.423704 TTCCTTGGACAATCCGTACATTA 57.576 39.130 0.00 0.00 38.63 1.90
309 446 5.623956 TCCTTGGACAATCCGTACATTAT 57.376 39.130 0.00 0.00 38.63 1.28
311 448 5.820423 TCCTTGGACAATCCGTACATTATTG 59.180 40.000 9.21 9.21 38.63 1.90
314 451 3.880490 GGACAATCCGTACATTATTGGCA 59.120 43.478 15.64 0.00 39.86 4.92
315 452 4.518970 GGACAATCCGTACATTATTGGCAT 59.481 41.667 15.64 0.00 39.86 4.40
316 453 5.009610 GGACAATCCGTACATTATTGGCATT 59.990 40.000 15.64 0.00 39.86 3.56
317 454 6.460953 GGACAATCCGTACATTATTGGCATTT 60.461 38.462 15.64 0.00 39.86 2.32
318 455 6.503524 ACAATCCGTACATTATTGGCATTTC 58.496 36.000 13.37 0.00 35.40 2.17
319 456 6.321181 ACAATCCGTACATTATTGGCATTTCT 59.679 34.615 13.37 0.00 35.40 2.52
320 457 7.500892 ACAATCCGTACATTATTGGCATTTCTA 59.499 33.333 13.37 0.00 35.40 2.10
321 458 8.514594 CAATCCGTACATTATTGGCATTTCTAT 58.485 33.333 0.00 0.00 0.00 1.98
322 459 8.635765 ATCCGTACATTATTGGCATTTCTATT 57.364 30.769 0.00 0.00 0.00 1.73
323 460 9.733556 ATCCGTACATTATTGGCATTTCTATTA 57.266 29.630 0.00 0.00 0.00 0.98
324 461 9.214957 TCCGTACATTATTGGCATTTCTATTAG 57.785 33.333 0.00 0.00 0.00 1.73
325 462 8.999431 CCGTACATTATTGGCATTTCTATTAGT 58.001 33.333 0.00 0.00 0.00 2.24
328 465 8.995027 ACATTATTGGCATTTCTATTAGTCCA 57.005 30.769 0.00 0.00 0.00 4.02
329 466 8.850156 ACATTATTGGCATTTCTATTAGTCCAC 58.150 33.333 0.00 0.00 0.00 4.02
330 467 9.071276 CATTATTGGCATTTCTATTAGTCCACT 57.929 33.333 0.00 0.00 0.00 4.00
331 468 9.646522 ATTATTGGCATTTCTATTAGTCCACTT 57.353 29.630 0.00 0.00 0.00 3.16
332 469 7.961326 ATTGGCATTTCTATTAGTCCACTTT 57.039 32.000 0.00 0.00 0.00 2.66
333 470 6.757897 TGGCATTTCTATTAGTCCACTTTG 57.242 37.500 0.00 0.00 0.00 2.77
334 471 5.652014 TGGCATTTCTATTAGTCCACTTTGG 59.348 40.000 0.00 0.00 39.43 3.28
335 472 5.652452 GGCATTTCTATTAGTCCACTTTGGT 59.348 40.000 0.00 0.00 39.03 3.67
336 473 6.152831 GGCATTTCTATTAGTCCACTTTGGTT 59.847 38.462 0.00 0.00 39.03 3.67
337 474 7.338449 GGCATTTCTATTAGTCCACTTTGGTTA 59.662 37.037 0.00 0.00 39.03 2.85
338 475 8.736244 GCATTTCTATTAGTCCACTTTGGTTAA 58.264 33.333 0.00 0.00 39.03 2.01
343 480 9.933723 TCTATTAGTCCACTTTGGTTAACTAAC 57.066 33.333 3.59 0.00 39.03 2.34
344 481 7.662604 ATTAGTCCACTTTGGTTAACTAACG 57.337 36.000 3.59 5.30 39.03 3.18
345 482 5.027293 AGTCCACTTTGGTTAACTAACGT 57.973 39.130 7.85 7.85 39.03 3.99
346 483 4.812626 AGTCCACTTTGGTTAACTAACGTG 59.187 41.667 25.14 25.14 39.03 4.49
347 484 4.477302 CCACTTTGGTTAACTAACGTGG 57.523 45.455 31.77 31.77 45.18 4.94
348 485 3.251487 CCACTTTGGTTAACTAACGTGGG 59.749 47.826 34.25 23.01 46.03 4.61
349 486 4.128643 CACTTTGGTTAACTAACGTGGGA 58.871 43.478 24.67 3.18 34.52 4.37
350 487 4.212636 CACTTTGGTTAACTAACGTGGGAG 59.787 45.833 24.67 13.00 34.52 4.30
351 488 3.405823 TTGGTTAACTAACGTGGGAGG 57.594 47.619 5.42 0.00 37.07 4.30
352 489 1.002315 TGGTTAACTAACGTGGGAGGC 59.998 52.381 5.42 0.00 37.07 4.70
353 490 1.277273 GGTTAACTAACGTGGGAGGCT 59.723 52.381 5.42 0.00 37.07 4.58
354 491 2.614779 GTTAACTAACGTGGGAGGCTC 58.385 52.381 5.78 5.78 0.00 4.70
355 492 1.188863 TAACTAACGTGGGAGGCTCC 58.811 55.000 25.80 25.80 35.23 4.70
356 493 0.834687 AACTAACGTGGGAGGCTCCA 60.835 55.000 33.27 17.57 38.64 3.86
357 494 0.617820 ACTAACGTGGGAGGCTCCAT 60.618 55.000 33.27 16.24 38.64 3.41
358 495 0.105039 CTAACGTGGGAGGCTCCATC 59.895 60.000 33.27 22.99 38.64 3.51
359 496 0.325296 TAACGTGGGAGGCTCCATCT 60.325 55.000 33.27 15.47 38.64 2.90
360 497 1.617947 AACGTGGGAGGCTCCATCTC 61.618 60.000 33.27 17.30 38.64 2.75
361 498 2.818132 GTGGGAGGCTCCATCTCG 59.182 66.667 33.27 0.00 38.64 4.04
362 499 1.758514 GTGGGAGGCTCCATCTCGA 60.759 63.158 33.27 8.07 38.64 4.04
363 500 1.118356 GTGGGAGGCTCCATCTCGAT 61.118 60.000 33.27 0.00 38.64 3.59
364 501 0.829602 TGGGAGGCTCCATCTCGATC 60.830 60.000 33.27 14.76 38.64 3.69
365 502 1.540435 GGGAGGCTCCATCTCGATCC 61.540 65.000 33.27 10.24 38.64 3.36
366 503 0.541764 GGAGGCTCCATCTCGATCCT 60.542 60.000 28.55 0.00 36.28 3.24
367 504 0.887933 GAGGCTCCATCTCGATCCTC 59.112 60.000 2.15 0.00 37.85 3.71
368 505 0.541764 AGGCTCCATCTCGATCCTCC 60.542 60.000 0.00 0.00 0.00 4.30
369 506 0.829602 GGCTCCATCTCGATCCTCCA 60.830 60.000 0.00 0.00 0.00 3.86
370 507 0.602562 GCTCCATCTCGATCCTCCAG 59.397 60.000 0.00 0.00 0.00 3.86
371 508 1.821272 GCTCCATCTCGATCCTCCAGA 60.821 57.143 0.00 0.00 0.00 3.86
372 509 2.806434 CTCCATCTCGATCCTCCAGAT 58.194 52.381 0.00 0.00 38.17 2.90
373 510 3.164268 CTCCATCTCGATCCTCCAGATT 58.836 50.000 0.00 0.00 34.42 2.40
374 511 2.896044 TCCATCTCGATCCTCCAGATTG 59.104 50.000 0.00 0.00 37.69 2.67
375 512 2.632028 CCATCTCGATCCTCCAGATTGT 59.368 50.000 0.00 0.00 37.60 2.71
376 513 3.070734 CCATCTCGATCCTCCAGATTGTT 59.929 47.826 0.00 0.00 37.60 2.83
377 514 4.444022 CCATCTCGATCCTCCAGATTGTTT 60.444 45.833 0.00 0.00 37.60 2.83
378 515 5.221521 CCATCTCGATCCTCCAGATTGTTTA 60.222 44.000 0.00 0.00 37.60 2.01
379 516 6.462500 CATCTCGATCCTCCAGATTGTTTAT 58.538 40.000 0.00 0.00 37.60 1.40
380 517 5.847304 TCTCGATCCTCCAGATTGTTTATG 58.153 41.667 0.00 0.00 37.60 1.90
381 518 5.598417 TCTCGATCCTCCAGATTGTTTATGA 59.402 40.000 0.00 0.00 37.60 2.15
382 519 6.098266 TCTCGATCCTCCAGATTGTTTATGAA 59.902 38.462 0.00 0.00 37.60 2.57
383 520 6.830912 TCGATCCTCCAGATTGTTTATGAAT 58.169 36.000 0.00 0.00 37.60 2.57
384 521 7.962441 TCGATCCTCCAGATTGTTTATGAATA 58.038 34.615 0.00 0.00 37.60 1.75
385 522 8.597167 TCGATCCTCCAGATTGTTTATGAATAT 58.403 33.333 0.00 0.00 37.60 1.28
386 523 9.224267 CGATCCTCCAGATTGTTTATGAATATT 57.776 33.333 0.00 0.00 34.42 1.28
388 525 8.696043 TCCTCCAGATTGTTTATGAATATTGG 57.304 34.615 0.00 0.00 0.00 3.16
389 526 8.501904 TCCTCCAGATTGTTTATGAATATTGGA 58.498 33.333 0.00 0.00 31.14 3.53
390 527 8.790718 CCTCCAGATTGTTTATGAATATTGGAG 58.209 37.037 0.01 0.01 40.44 3.86
391 528 8.169977 TCCAGATTGTTTATGAATATTGGAGC 57.830 34.615 0.00 0.00 29.67 4.70
392 529 7.041167 TCCAGATTGTTTATGAATATTGGAGCG 60.041 37.037 0.00 0.00 29.67 5.03
393 530 6.580041 CAGATTGTTTATGAATATTGGAGCGC 59.420 38.462 0.00 0.00 0.00 5.92
394 531 5.826601 TTGTTTATGAATATTGGAGCGCA 57.173 34.783 11.47 0.00 0.00 6.09
395 532 5.826601 TGTTTATGAATATTGGAGCGCAA 57.173 34.783 11.47 0.00 0.00 4.85
396 533 6.201226 TGTTTATGAATATTGGAGCGCAAA 57.799 33.333 11.47 0.49 0.00 3.68
397 534 6.033341 TGTTTATGAATATTGGAGCGCAAAC 58.967 36.000 11.47 7.18 0.00 2.93
398 535 6.127758 TGTTTATGAATATTGGAGCGCAAACT 60.128 34.615 11.47 0.00 0.00 2.66
399 536 3.763097 TGAATATTGGAGCGCAAACTG 57.237 42.857 11.47 0.00 0.00 3.16
400 537 3.081061 TGAATATTGGAGCGCAAACTGT 58.919 40.909 11.47 0.00 0.00 3.55
401 538 3.119884 TGAATATTGGAGCGCAAACTGTG 60.120 43.478 11.47 0.00 0.00 3.66
402 539 1.164411 TATTGGAGCGCAAACTGTGG 58.836 50.000 11.47 0.00 0.00 4.17
403 540 0.537143 ATTGGAGCGCAAACTGTGGA 60.537 50.000 11.47 0.00 0.00 4.02
404 541 0.537143 TTGGAGCGCAAACTGTGGAT 60.537 50.000 11.47 0.00 0.00 3.41
405 542 0.955428 TGGAGCGCAAACTGTGGATC 60.955 55.000 11.47 0.00 0.00 3.36
406 543 0.674895 GGAGCGCAAACTGTGGATCT 60.675 55.000 11.47 0.00 0.00 2.75
407 544 1.405526 GGAGCGCAAACTGTGGATCTA 60.406 52.381 11.47 0.00 0.00 1.98
408 545 2.346803 GAGCGCAAACTGTGGATCTAA 58.653 47.619 11.47 0.00 0.00 2.10
409 546 2.742053 GAGCGCAAACTGTGGATCTAAA 59.258 45.455 11.47 0.00 0.00 1.85
410 547 3.347216 AGCGCAAACTGTGGATCTAAAT 58.653 40.909 11.47 0.00 0.00 1.40
411 548 3.758554 AGCGCAAACTGTGGATCTAAATT 59.241 39.130 11.47 0.00 0.00 1.82
412 549 4.941263 AGCGCAAACTGTGGATCTAAATTA 59.059 37.500 11.47 0.00 0.00 1.40
413 550 5.590259 AGCGCAAACTGTGGATCTAAATTAT 59.410 36.000 11.47 0.00 0.00 1.28
414 551 5.909610 GCGCAAACTGTGGATCTAAATTATC 59.090 40.000 0.30 0.00 0.00 1.75
415 552 6.238484 GCGCAAACTGTGGATCTAAATTATCT 60.238 38.462 0.30 0.00 0.00 1.98
416 553 7.128331 CGCAAACTGTGGATCTAAATTATCTG 58.872 38.462 0.00 0.00 0.00 2.90
417 554 7.420800 GCAAACTGTGGATCTAAATTATCTGG 58.579 38.462 0.00 0.00 0.00 3.86
418 555 7.420800 CAAACTGTGGATCTAAATTATCTGGC 58.579 38.462 0.00 0.00 0.00 4.85
445 582 3.953612 ACCAGTTGCACATTTTCTGAAGA 59.046 39.130 0.00 0.00 0.00 2.87
446 583 4.202050 ACCAGTTGCACATTTTCTGAAGAC 60.202 41.667 0.00 0.00 0.00 3.01
447 584 4.293415 CAGTTGCACATTTTCTGAAGACC 58.707 43.478 0.00 0.00 0.00 3.85
448 585 3.003689 AGTTGCACATTTTCTGAAGACCG 59.996 43.478 0.00 0.00 0.00 4.79
449 586 2.844946 TGCACATTTTCTGAAGACCGA 58.155 42.857 0.00 0.00 0.00 4.69
450 587 3.210227 TGCACATTTTCTGAAGACCGAA 58.790 40.909 0.00 0.00 0.00 4.30
451 588 3.250762 TGCACATTTTCTGAAGACCGAAG 59.749 43.478 0.00 0.00 0.00 3.79
467 604 2.358898 CCGAAGGTGCCATTAATTGGAG 59.641 50.000 7.79 0.00 46.97 3.86
469 606 6.221558 CCGAAGGTGCCATTAATTGGAGTG 62.222 50.000 7.79 0.00 46.97 3.51
485 622 5.484173 TGGAGTGATAAACGAATCAATGC 57.516 39.130 10.32 10.32 41.07 3.56
486 623 4.033932 TGGAGTGATAAACGAATCAATGCG 59.966 41.667 11.66 0.00 42.82 4.73
487 624 4.270084 GGAGTGATAAACGAATCAATGCGA 59.730 41.667 0.00 0.00 37.61 5.10
488 625 5.143916 AGTGATAAACGAATCAATGCGAC 57.856 39.130 0.00 0.00 37.61 5.19
489 626 4.629634 AGTGATAAACGAATCAATGCGACA 59.370 37.500 0.00 0.00 37.61 4.35
490 627 4.957967 GTGATAAACGAATCAATGCGACAG 59.042 41.667 0.00 0.00 37.61 3.51
491 628 4.867608 TGATAAACGAATCAATGCGACAGA 59.132 37.500 0.00 0.00 32.97 3.41
492 629 3.729526 AAACGAATCAATGCGACAGAG 57.270 42.857 0.00 0.00 0.00 3.35
493 630 1.002366 ACGAATCAATGCGACAGAGC 58.998 50.000 0.00 0.00 37.71 4.09
494 631 1.284657 CGAATCAATGCGACAGAGCT 58.715 50.000 0.00 0.00 38.13 4.09
495 632 1.662629 CGAATCAATGCGACAGAGCTT 59.337 47.619 0.00 0.00 38.13 3.74
496 633 2.094894 CGAATCAATGCGACAGAGCTTT 59.905 45.455 0.00 0.00 38.13 3.51
497 634 3.678662 GAATCAATGCGACAGAGCTTTC 58.321 45.455 0.00 0.00 38.13 2.62
498 635 2.168326 TCAATGCGACAGAGCTTTCA 57.832 45.000 0.00 0.00 38.13 2.69
499 636 1.800586 TCAATGCGACAGAGCTTTCAC 59.199 47.619 0.00 0.00 38.13 3.18
500 637 1.532437 CAATGCGACAGAGCTTTCACA 59.468 47.619 0.00 0.00 38.13 3.58
501 638 1.151668 ATGCGACAGAGCTTTCACAC 58.848 50.000 0.00 0.00 38.13 3.82
502 639 0.104855 TGCGACAGAGCTTTCACACT 59.895 50.000 0.00 0.00 38.13 3.55
503 640 1.221414 GCGACAGAGCTTTCACACTT 58.779 50.000 0.00 0.00 0.00 3.16
504 641 1.193426 GCGACAGAGCTTTCACACTTC 59.807 52.381 0.00 0.00 0.00 3.01
505 642 2.473816 CGACAGAGCTTTCACACTTCA 58.526 47.619 0.00 0.00 0.00 3.02
506 643 2.474359 CGACAGAGCTTTCACACTTCAG 59.526 50.000 0.00 0.00 0.00 3.02
507 644 3.722147 GACAGAGCTTTCACACTTCAGA 58.278 45.455 0.00 0.00 0.00 3.27
508 645 4.314121 GACAGAGCTTTCACACTTCAGAT 58.686 43.478 0.00 0.00 0.00 2.90
509 646 4.314121 ACAGAGCTTTCACACTTCAGATC 58.686 43.478 0.00 0.00 0.00 2.75
510 647 3.683822 CAGAGCTTTCACACTTCAGATCC 59.316 47.826 0.00 0.00 0.00 3.36
511 648 2.670414 GAGCTTTCACACTTCAGATCCG 59.330 50.000 0.00 0.00 0.00 4.18
512 649 2.037772 AGCTTTCACACTTCAGATCCGT 59.962 45.455 0.00 0.00 0.00 4.69
513 650 2.413453 GCTTTCACACTTCAGATCCGTC 59.587 50.000 0.00 0.00 0.00 4.79
514 651 3.862642 GCTTTCACACTTCAGATCCGTCT 60.863 47.826 0.00 0.00 34.14 4.18
515 652 4.310769 CTTTCACACTTCAGATCCGTCTT 58.689 43.478 0.00 0.00 30.42 3.01
516 653 5.462530 TTTCACACTTCAGATCCGTCTTA 57.537 39.130 0.00 0.00 30.42 2.10
517 654 4.436242 TCACACTTCAGATCCGTCTTAC 57.564 45.455 0.00 0.00 30.42 2.34
518 655 3.824443 TCACACTTCAGATCCGTCTTACA 59.176 43.478 0.00 0.00 30.42 2.41
519 656 4.082733 TCACACTTCAGATCCGTCTTACAG 60.083 45.833 0.00 0.00 30.42 2.74
520 657 3.182967 CACTTCAGATCCGTCTTACAGC 58.817 50.000 0.00 0.00 30.42 4.40
521 658 2.826128 ACTTCAGATCCGTCTTACAGCA 59.174 45.455 0.00 0.00 30.42 4.41
522 659 3.258372 ACTTCAGATCCGTCTTACAGCAA 59.742 43.478 0.00 0.00 30.42 3.91
523 660 4.081420 ACTTCAGATCCGTCTTACAGCAAT 60.081 41.667 0.00 0.00 30.42 3.56
524 661 3.785486 TCAGATCCGTCTTACAGCAATG 58.215 45.455 0.00 0.00 30.42 2.82
525 662 2.286294 CAGATCCGTCTTACAGCAATGC 59.714 50.000 0.00 0.00 30.42 3.56
526 663 2.093500 AGATCCGTCTTACAGCAATGCA 60.093 45.455 8.35 0.00 0.00 3.96
527 664 2.177394 TCCGTCTTACAGCAATGCAA 57.823 45.000 8.35 0.00 0.00 4.08
532 669 3.419915 GTCTTACAGCAATGCAATGACG 58.580 45.455 8.35 0.00 0.00 4.35
535 672 1.154169 CAGCAATGCAATGACGCGT 60.154 52.632 13.85 13.85 33.35 6.01
540 677 2.430956 CAATGCAATGACGCGTAAGTC 58.569 47.619 13.97 0.00 41.30 3.01
551 688 1.517276 CGCGTAAGTCGTGGATCAATC 59.483 52.381 0.00 0.00 44.94 2.67
567 705 5.594199 ATCAATCCATGATCCATCCAAGA 57.406 39.130 0.00 0.00 45.91 3.02
575 713 0.106819 ATCCATCCAAGACTGCAGGC 60.107 55.000 19.93 16.91 0.00 4.85
583 721 2.965716 AAGACTGCAGGCTGGCGTTT 62.966 55.000 26.26 2.20 36.28 3.60
584 722 2.519302 ACTGCAGGCTGGCGTTTT 60.519 55.556 19.93 0.00 36.28 2.43
586 724 4.283403 TGCAGGCTGGCGTTTTGC 62.283 61.111 17.64 6.27 45.38 3.68
606 744 4.136517 GCACCAAGTTGCAATTTTCATG 57.863 40.909 0.59 3.97 42.49 3.07
607 745 3.058777 GCACCAAGTTGCAATTTTCATGG 60.059 43.478 0.59 5.60 42.49 3.66
612 750 3.667360 AGTTGCAATTTTCATGGAAGGC 58.333 40.909 0.59 0.00 0.00 4.35
613 751 3.071312 AGTTGCAATTTTCATGGAAGGCA 59.929 39.130 0.59 5.89 0.00 4.75
635 789 4.003648 ACGAATCCTTGGAAGCTTAACTG 58.996 43.478 0.00 0.00 0.00 3.16
636 790 4.253685 CGAATCCTTGGAAGCTTAACTGA 58.746 43.478 0.00 0.00 0.00 3.41
667 821 2.112898 CATGTGCTGGAATCTGGGC 58.887 57.895 0.00 0.00 0.00 5.36
675 829 2.324541 CTGGAATCTGGGCTAGCTACT 58.675 52.381 15.72 0.00 0.00 2.57
677 831 2.700897 TGGAATCTGGGCTAGCTACTTC 59.299 50.000 15.72 10.35 0.00 3.01
683 837 4.547671 TCTGGGCTAGCTACTTCTGTATT 58.452 43.478 15.72 0.00 0.00 1.89
691 845 9.849166 GGCTAGCTACTTCTGTATTAATCTAAG 57.151 37.037 15.72 0.00 0.00 2.18
695 849 9.869667 AGCTACTTCTGTATTAATCTAAGAGGA 57.130 33.333 9.61 0.00 0.00 3.71
716 870 9.297037 AGAGGATATTTAAATATTCGGTTTGGG 57.703 33.333 19.30 0.00 33.03 4.12
717 871 9.074576 GAGGATATTTAAATATTCGGTTTGGGT 57.925 33.333 19.30 2.13 33.03 4.51
718 872 8.856103 AGGATATTTAAATATTCGGTTTGGGTG 58.144 33.333 19.30 0.00 33.03 4.61
719 873 7.597369 GGATATTTAAATATTCGGTTTGGGTGC 59.403 37.037 19.30 4.71 31.96 5.01
720 874 5.723672 TTTAAATATTCGGTTTGGGTGCA 57.276 34.783 0.00 0.00 0.00 4.57
722 876 3.866883 AATATTCGGTTTGGGTGCAAG 57.133 42.857 0.00 0.00 0.00 4.01
723 877 2.279935 TATTCGGTTTGGGTGCAAGT 57.720 45.000 0.00 0.00 0.00 3.16
724 878 1.408969 ATTCGGTTTGGGTGCAAGTT 58.591 45.000 0.00 0.00 0.00 2.66
725 879 0.457851 TTCGGTTTGGGTGCAAGTTG 59.542 50.000 0.00 0.00 0.00 3.16
727 881 1.025812 CGGTTTGGGTGCAAGTTGTA 58.974 50.000 4.48 0.00 0.00 2.41
728 882 1.611491 CGGTTTGGGTGCAAGTTGTAT 59.389 47.619 4.48 0.00 0.00 2.29
730 884 3.442273 CGGTTTGGGTGCAAGTTGTATAT 59.558 43.478 4.48 0.00 0.00 0.86
731 885 4.674101 CGGTTTGGGTGCAAGTTGTATATG 60.674 45.833 4.48 0.00 0.00 1.78
750 908 2.871133 TGTATAGCTCGTTGACGTTGG 58.129 47.619 3.25 0.00 40.80 3.77
751 909 2.190981 GTATAGCTCGTTGACGTTGGG 58.809 52.381 3.25 0.00 40.80 4.12
755 913 1.569493 CTCGTTGACGTTGGGCAAG 59.431 57.895 3.25 0.00 40.80 4.01
765 923 2.091541 CGTTGGGCAAGTTGGTCATAT 58.908 47.619 4.75 0.00 0.00 1.78
773 931 5.163513 GGCAAGTTGGTCATATGTTTGAAG 58.836 41.667 4.75 0.00 0.00 3.02
783 941 6.460123 GGTCATATGTTTGAAGGTGCCAATAG 60.460 42.308 1.90 0.00 0.00 1.73
786 944 5.587388 ATGTTTGAAGGTGCCAATAGATG 57.413 39.130 0.00 0.00 0.00 2.90
804 962 7.872113 ATAGATGGAGGAAAATGTCAGAAAC 57.128 36.000 0.00 0.00 0.00 2.78
805 963 4.697352 AGATGGAGGAAAATGTCAGAAACG 59.303 41.667 0.00 0.00 0.00 3.60
842 1001 4.697352 AGCTTTCACACATCTGTCCATAAC 59.303 41.667 0.00 0.00 0.00 1.89
888 1051 2.549349 CGGCCGGCCTATACAAATAGTT 60.549 50.000 41.01 0.00 34.36 2.24
890 1053 2.225727 GCCGGCCTATACAAATAGTTGC 59.774 50.000 18.11 0.00 38.39 4.17
891 1054 2.812011 CCGGCCTATACAAATAGTTGCC 59.188 50.000 2.17 0.00 38.60 4.52
892 1055 3.472652 CGGCCTATACAAATAGTTGCCA 58.527 45.455 2.17 0.00 40.43 4.92
893 1056 4.072131 CGGCCTATACAAATAGTTGCCAT 58.928 43.478 2.17 0.00 40.43 4.40
894 1057 4.154195 CGGCCTATACAAATAGTTGCCATC 59.846 45.833 2.17 0.00 40.43 3.51
895 1058 4.459337 GGCCTATACAAATAGTTGCCATCC 59.541 45.833 2.17 0.00 40.27 3.51
896 1059 4.459337 GCCTATACAAATAGTTGCCATCCC 59.541 45.833 2.17 0.00 38.39 3.85
897 1060 4.695455 CCTATACAAATAGTTGCCATCCCG 59.305 45.833 2.17 0.00 38.39 5.14
898 1061 2.799126 ACAAATAGTTGCCATCCCGA 57.201 45.000 2.17 0.00 38.39 5.14
899 1062 2.365582 ACAAATAGTTGCCATCCCGAC 58.634 47.619 2.17 0.00 38.39 4.79
900 1063 1.676006 CAAATAGTTGCCATCCCGACC 59.324 52.381 0.00 0.00 0.00 4.79
901 1064 0.179056 AATAGTTGCCATCCCGACCG 60.179 55.000 0.00 0.00 0.00 4.79
902 1065 1.046472 ATAGTTGCCATCCCGACCGA 61.046 55.000 0.00 0.00 0.00 4.69
903 1066 1.259142 TAGTTGCCATCCCGACCGAA 61.259 55.000 0.00 0.00 0.00 4.30
904 1067 1.451387 GTTGCCATCCCGACCGAAT 60.451 57.895 0.00 0.00 0.00 3.34
905 1068 1.451207 TTGCCATCCCGACCGAATG 60.451 57.895 0.00 0.00 0.00 2.67
906 1069 2.591715 GCCATCCCGACCGAATGG 60.592 66.667 14.99 14.99 42.84 3.16
907 1070 3.101796 GCCATCCCGACCGAATGGA 62.102 63.158 20.28 7.80 39.21 3.41
908 1071 1.754745 CCATCCCGACCGAATGGAT 59.245 57.895 14.46 5.68 39.47 3.41
923 1093 0.107703 TGGATCCATCGAGCACCAAC 60.108 55.000 11.44 0.00 0.00 3.77
934 1104 2.668279 CGAGCACCAACCAGCAATTAAC 60.668 50.000 0.00 0.00 0.00 2.01
938 1108 3.366985 GCACCAACCAGCAATTAACCTAC 60.367 47.826 0.00 0.00 0.00 3.18
944 1114 3.193267 ACCAGCAATTAACCTACGTACGA 59.807 43.478 24.41 4.69 0.00 3.43
947 1117 4.860907 CAGCAATTAACCTACGTACGAACT 59.139 41.667 24.41 1.48 0.00 3.01
961 1131 4.962751 CGTACGAACTTAGCTAGTGATCAC 59.037 45.833 18.47 18.47 37.12 3.06
984 1154 2.998670 CACACACACATCAGATCACCTC 59.001 50.000 0.00 0.00 0.00 3.85
989 1159 3.688185 CACACATCAGATCACCTCCAAAG 59.312 47.826 0.00 0.00 0.00 2.77
996 1166 5.555017 TCAGATCACCTCCAAAGAAGAAAG 58.445 41.667 0.00 0.00 0.00 2.62
1006 1176 6.183360 CCTCCAAAGAAGAAAGATAATGGCAG 60.183 42.308 0.00 0.00 0.00 4.85
1009 1179 6.406624 CCAAAGAAGAAAGATAATGGCAGCAT 60.407 38.462 0.00 0.00 0.00 3.79
1010 1180 6.388435 AAGAAGAAAGATAATGGCAGCATC 57.612 37.500 0.00 0.00 0.00 3.91
1012 1182 5.531659 AGAAGAAAGATAATGGCAGCATCAG 59.468 40.000 12.15 0.00 0.00 2.90
1020 1190 3.574445 GCAGCATCAGCCAGCGAG 61.574 66.667 0.00 0.00 43.56 5.03
1025 1195 1.566882 GCATCAGCCAGCGAGCATAG 61.567 60.000 3.80 0.00 34.23 2.23
1038 1208 1.001706 GAGCATAGTGCCGTCGACATA 60.002 52.381 17.16 0.00 46.52 2.29
1040 1210 1.409412 CATAGTGCCGTCGACATAGC 58.591 55.000 17.16 15.13 0.00 2.97
1041 1211 1.029681 ATAGTGCCGTCGACATAGCA 58.970 50.000 17.16 17.59 0.00 3.49
1045 1215 1.033202 TGCCGTCGACATAGCACCTA 61.033 55.000 17.16 0.00 0.00 3.08
1046 1216 0.594284 GCCGTCGACATAGCACCTAC 60.594 60.000 17.16 0.00 0.00 3.18
1047 1217 0.316772 CCGTCGACATAGCACCTACG 60.317 60.000 17.16 0.00 0.00 3.51
1052 1222 1.263484 CGACATAGCACCTACGACGAT 59.737 52.381 0.00 0.00 0.00 3.73
1055 1225 1.787155 CATAGCACCTACGACGATTGC 59.213 52.381 0.00 4.27 0.00 3.56
1094 1276 1.271001 TGATGGCAAGACCTGTGTGAG 60.271 52.381 0.00 0.00 40.22 3.51
1311 1493 5.481105 CACAAAGGTAAGGTGTATTACGGA 58.519 41.667 0.00 0.00 36.66 4.69
1321 1503 3.243501 GGTGTATTACGGAATAGCCACGA 60.244 47.826 13.37 0.00 35.94 4.35
1325 1507 1.596603 TACGGAATAGCCACGATCGA 58.403 50.000 24.34 0.00 35.94 3.59
1326 1508 0.959553 ACGGAATAGCCACGATCGAT 59.040 50.000 24.34 0.00 35.94 3.59
1356 1538 6.929049 TGAACATATTCAACATATCGAGGGAC 59.071 38.462 0.00 0.00 41.99 4.46
1381 1563 1.276705 AGAAGAAGGAGTTCGAAGGCC 59.723 52.381 0.00 2.72 37.79 5.19
1545 1727 2.684843 GCTGCTCAAGAACCTGCCG 61.685 63.158 0.00 0.00 0.00 5.69
1616 1798 2.787473 AGGAACTTCATCGGATGCAA 57.213 45.000 13.15 7.68 27.25 4.08
1623 1805 2.180204 CATCGGATGCAACGACCCC 61.180 63.158 17.40 0.00 43.78 4.95
1654 1836 2.030457 GGTTATGACGACATCGCCAAAG 59.970 50.000 3.03 0.00 44.43 2.77
1655 1837 2.665649 TATGACGACATCGCCAAAGT 57.334 45.000 3.03 0.00 44.43 2.66
1656 1838 1.359848 ATGACGACATCGCCAAAGTC 58.640 50.000 0.14 0.00 44.43 3.01
1660 1842 1.702299 GACATCGCCAAAGTCGTCG 59.298 57.895 0.00 0.00 0.00 5.12
1661 1843 2.279937 GACATCGCCAAAGTCGTCGC 62.280 60.000 0.00 0.00 0.00 5.19
1663 1845 1.805945 ATCGCCAAAGTCGTCGCTC 60.806 57.895 0.00 0.00 0.00 5.03
1665 1847 2.307309 CGCCAAAGTCGTCGCTCAA 61.307 57.895 0.00 0.00 0.00 3.02
1668 1850 1.428448 CCAAAGTCGTCGCTCAATCA 58.572 50.000 0.00 0.00 0.00 2.57
1669 1851 1.126846 CCAAAGTCGTCGCTCAATCAC 59.873 52.381 0.00 0.00 0.00 3.06
1674 1856 0.530288 TCGTCGCTCAATCACCATCA 59.470 50.000 0.00 0.00 0.00 3.07
1678 1860 2.094894 GTCGCTCAATCACCATCAACTG 59.905 50.000 0.00 0.00 0.00 3.16
1679 1861 2.079158 CGCTCAATCACCATCAACTGT 58.921 47.619 0.00 0.00 0.00 3.55
1684 1866 5.482006 CTCAATCACCATCAACTGTCACTA 58.518 41.667 0.00 0.00 0.00 2.74
1685 1867 6.053632 TCAATCACCATCAACTGTCACTAT 57.946 37.500 0.00 0.00 0.00 2.12
1691 1873 7.220740 TCACCATCAACTGTCACTATTACAAA 58.779 34.615 0.00 0.00 0.00 2.83
1693 1875 9.161629 CACCATCAACTGTCACTATTACAAATA 57.838 33.333 0.00 0.00 0.00 1.40
1694 1876 9.162764 ACCATCAACTGTCACTATTACAAATAC 57.837 33.333 0.00 0.00 0.00 1.89
1695 1877 9.161629 CCATCAACTGTCACTATTACAAATACA 57.838 33.333 0.00 0.00 0.00 2.29
1698 1880 8.995220 TCAACTGTCACTATTACAAATACAACC 58.005 33.333 0.00 0.00 0.00 3.77
1699 1881 7.916914 ACTGTCACTATTACAAATACAACCC 57.083 36.000 0.00 0.00 0.00 4.11
1700 1882 6.882678 ACTGTCACTATTACAAATACAACCCC 59.117 38.462 0.00 0.00 0.00 4.95
1701 1883 6.780901 TGTCACTATTACAAATACAACCCCA 58.219 36.000 0.00 0.00 0.00 4.96
1702 1884 6.655848 TGTCACTATTACAAATACAACCCCAC 59.344 38.462 0.00 0.00 0.00 4.61
1739 1921 5.120208 GTGCTCGCTAATCAACTTACAGAAA 59.880 40.000 0.00 0.00 0.00 2.52
1745 1927 9.378551 TCGCTAATCAACTTACAGAAAATGTAT 57.621 29.630 0.00 0.00 43.87 2.29
1746 1928 9.988350 CGCTAATCAACTTACAGAAAATGTATT 57.012 29.630 0.00 0.00 43.87 1.89
1752 1934 7.172532 TCAACTTACAGAAAATGTATTGCGTCT 59.827 33.333 0.00 0.00 43.87 4.18
1765 1947 6.403049 TGTATTGCGTCTTCTATTTCCTTGA 58.597 36.000 0.00 0.00 0.00 3.02
1769 1951 5.408356 TGCGTCTTCTATTTCCTTGACTAC 58.592 41.667 0.00 0.00 0.00 2.73
1773 1955 7.194962 CGTCTTCTATTTCCTTGACTACCTAC 58.805 42.308 0.00 0.00 0.00 3.18
1777 1959 7.642082 TCTATTTCCTTGACTACCTACTGAC 57.358 40.000 0.00 0.00 0.00 3.51
1780 1962 5.723672 TTCCTTGACTACCTACTGACAAG 57.276 43.478 0.00 0.00 35.84 3.16
1781 1963 4.994282 TCCTTGACTACCTACTGACAAGA 58.006 43.478 0.00 0.00 37.49 3.02
1812 1994 9.451002 TGTTATTTCAATTTCATGCCAATTCAT 57.549 25.926 0.00 0.00 0.00 2.57
1815 1997 6.650239 TTCAATTTCATGCCAATTCATTCG 57.350 33.333 0.00 0.00 0.00 3.34
1816 1998 5.722263 TCAATTTCATGCCAATTCATTCGT 58.278 33.333 0.00 0.00 0.00 3.85
1817 1999 6.164876 TCAATTTCATGCCAATTCATTCGTT 58.835 32.000 0.00 0.00 0.00 3.85
1819 2001 7.980662 TCAATTTCATGCCAATTCATTCGTTAT 59.019 29.630 0.00 0.00 0.00 1.89
1820 2002 9.247126 CAATTTCATGCCAATTCATTCGTTATA 57.753 29.630 0.00 0.00 0.00 0.98
1829 2011 9.691362 GCCAATTCATTCGTTATATAATGGTTT 57.309 29.630 13.53 0.00 34.52 3.27
1848 2030 7.880160 TGGTTTATTGAATACTTGCATAGCT 57.120 32.000 0.00 0.00 0.00 3.32
1849 2031 8.292444 TGGTTTATTGAATACTTGCATAGCTT 57.708 30.769 0.00 0.00 0.00 3.74
1850 2032 8.405531 TGGTTTATTGAATACTTGCATAGCTTC 58.594 33.333 0.00 0.00 0.00 3.86
1851 2033 7.587757 GGTTTATTGAATACTTGCATAGCTTCG 59.412 37.037 0.00 0.00 0.00 3.79
1852 2034 5.679734 ATTGAATACTTGCATAGCTTCGG 57.320 39.130 0.00 0.00 0.00 4.30
1854 2036 4.119862 TGAATACTTGCATAGCTTCGGTC 58.880 43.478 0.00 0.00 0.00 4.79
1857 2039 2.350522 ACTTGCATAGCTTCGGTCTTG 58.649 47.619 0.00 0.00 0.00 3.02
1861 2043 4.929819 TGCATAGCTTCGGTCTTGTATA 57.070 40.909 0.00 0.00 0.00 1.47
1862 2044 4.871513 TGCATAGCTTCGGTCTTGTATAG 58.128 43.478 0.00 0.00 0.00 1.31
1863 2045 3.675698 GCATAGCTTCGGTCTTGTATAGC 59.324 47.826 0.00 0.00 0.00 2.97
1864 2046 4.559704 GCATAGCTTCGGTCTTGTATAGCT 60.560 45.833 0.00 0.00 41.44 3.32
1868 2050 3.242446 GCTTCGGTCTTGTATAGCTTTGC 60.242 47.826 0.00 0.00 0.00 3.68
1869 2051 3.887621 TCGGTCTTGTATAGCTTTGCT 57.112 42.857 0.00 0.00 43.41 3.91
1870 2052 4.994907 TCGGTCTTGTATAGCTTTGCTA 57.005 40.909 0.00 1.60 45.55 3.49
1871 2053 4.679662 TCGGTCTTGTATAGCTTTGCTAC 58.320 43.478 0.00 0.00 44.24 3.58
1872 2054 4.401519 TCGGTCTTGTATAGCTTTGCTACT 59.598 41.667 0.00 0.00 44.24 2.57
1874 2056 4.271291 GGTCTTGTATAGCTTTGCTACTGC 59.729 45.833 0.00 0.00 44.24 4.40
1875 2057 4.271291 GTCTTGTATAGCTTTGCTACTGCC 59.729 45.833 0.00 0.00 44.24 4.85
1876 2058 3.904800 TGTATAGCTTTGCTACTGCCA 57.095 42.857 0.00 0.00 44.24 4.92
1878 2060 1.673168 ATAGCTTTGCTACTGCCAGC 58.327 50.000 0.00 0.00 44.24 4.85
1885 2067 1.619654 TGCTACTGCCAGCATGTTTT 58.380 45.000 0.00 0.00 46.41 2.43
1886 2068 1.962807 TGCTACTGCCAGCATGTTTTT 59.037 42.857 0.00 0.00 46.41 1.94
1887 2069 2.288334 TGCTACTGCCAGCATGTTTTTG 60.288 45.455 0.00 0.00 46.41 2.44
1889 2071 3.057596 GCTACTGCCAGCATGTTTTTGTA 60.058 43.478 0.00 0.00 41.40 2.41
1890 2072 4.380867 GCTACTGCCAGCATGTTTTTGTAT 60.381 41.667 0.00 0.00 41.40 2.29
1891 2073 3.916761 ACTGCCAGCATGTTTTTGTATG 58.083 40.909 0.00 0.00 0.00 2.39
1892 2074 3.321682 ACTGCCAGCATGTTTTTGTATGT 59.678 39.130 0.00 0.00 0.00 2.29
1893 2075 3.651206 TGCCAGCATGTTTTTGTATGTG 58.349 40.909 0.00 0.00 0.00 3.21
1894 2076 3.069300 TGCCAGCATGTTTTTGTATGTGT 59.931 39.130 0.00 0.00 0.00 3.72
1895 2077 4.057432 GCCAGCATGTTTTTGTATGTGTT 58.943 39.130 0.00 0.00 0.00 3.32
1897 2079 5.558653 GCCAGCATGTTTTTGTATGTGTTTG 60.559 40.000 0.00 0.00 0.00 2.93
1899 2081 6.412460 CAGCATGTTTTTGTATGTGTTTGTG 58.588 36.000 0.00 0.00 0.00 3.33
1903 2085 7.623089 GCATGTTTTTGTATGTGTTTGTGTTGT 60.623 33.333 0.00 0.00 0.00 3.32
1904 2086 7.339732 TGTTTTTGTATGTGTTTGTGTTGTC 57.660 32.000 0.00 0.00 0.00 3.18
1905 2087 7.148641 TGTTTTTGTATGTGTTTGTGTTGTCT 58.851 30.769 0.00 0.00 0.00 3.41
1906 2088 7.115520 TGTTTTTGTATGTGTTTGTGTTGTCTG 59.884 33.333 0.00 0.00 0.00 3.51
1907 2089 5.888691 TTGTATGTGTTTGTGTTGTCTGT 57.111 34.783 0.00 0.00 0.00 3.41
1908 2090 5.228579 TGTATGTGTTTGTGTTGTCTGTG 57.771 39.130 0.00 0.00 0.00 3.66
1910 2092 5.875359 TGTATGTGTTTGTGTTGTCTGTGTA 59.125 36.000 0.00 0.00 0.00 2.90
1911 2093 4.671880 TGTGTTTGTGTTGTCTGTGTAC 57.328 40.909 0.00 0.00 0.00 2.90
1912 2094 4.065789 TGTGTTTGTGTTGTCTGTGTACA 58.934 39.130 0.00 0.00 0.00 2.90
1913 2095 4.697828 TGTGTTTGTGTTGTCTGTGTACAT 59.302 37.500 0.00 0.00 0.00 2.29
1915 2097 4.334203 TGTTTGTGTTGTCTGTGTACATCC 59.666 41.667 0.00 0.00 0.00 3.51
1919 2101 6.109156 TGTGTTGTCTGTGTACATCCTAAT 57.891 37.500 0.00 0.00 0.00 1.73
1920 2102 6.530120 TGTGTTGTCTGTGTACATCCTAATT 58.470 36.000 0.00 0.00 0.00 1.40
1922 2104 8.318412 TGTGTTGTCTGTGTACATCCTAATTAT 58.682 33.333 0.00 0.00 0.00 1.28
1923 2105 8.604035 GTGTTGTCTGTGTACATCCTAATTATG 58.396 37.037 0.00 0.00 0.00 1.90
1924 2106 7.279981 TGTTGTCTGTGTACATCCTAATTATGC 59.720 37.037 0.00 0.00 0.00 3.14
1925 2107 6.883744 TGTCTGTGTACATCCTAATTATGCA 58.116 36.000 0.00 0.00 0.00 3.96
1927 2109 7.147742 TGTCTGTGTACATCCTAATTATGCAGA 60.148 37.037 0.00 0.00 0.00 4.26
1928 2110 7.710907 GTCTGTGTACATCCTAATTATGCAGAA 59.289 37.037 0.00 0.00 31.27 3.02
1929 2111 7.928167 TCTGTGTACATCCTAATTATGCAGAAG 59.072 37.037 0.00 0.00 0.00 2.85
1930 2112 6.483307 TGTGTACATCCTAATTATGCAGAAGC 59.517 38.462 0.00 0.00 42.57 3.86
1931 2113 5.997746 TGTACATCCTAATTATGCAGAAGCC 59.002 40.000 0.00 0.00 41.13 4.35
1932 2114 4.067896 ACATCCTAATTATGCAGAAGCCG 58.932 43.478 0.00 0.00 41.13 5.52
1933 2115 3.126001 TCCTAATTATGCAGAAGCCGG 57.874 47.619 0.00 0.00 41.13 6.13
1934 2116 2.154462 CCTAATTATGCAGAAGCCGGG 58.846 52.381 2.18 0.00 41.13 5.73
1935 2117 2.487265 CCTAATTATGCAGAAGCCGGGT 60.487 50.000 0.00 0.00 41.13 5.28
1936 2118 1.392589 AATTATGCAGAAGCCGGGTG 58.607 50.000 7.07 0.00 41.13 4.61
1938 2120 0.906066 TTATGCAGAAGCCGGGTGTA 59.094 50.000 7.07 0.00 41.13 2.90
1939 2121 1.128200 TATGCAGAAGCCGGGTGTAT 58.872 50.000 7.07 2.19 41.13 2.29
1940 2122 0.464373 ATGCAGAAGCCGGGTGTATG 60.464 55.000 7.07 7.83 41.13 2.39
1941 2123 2.472909 GCAGAAGCCGGGTGTATGC 61.473 63.158 18.42 18.42 33.58 3.14
1942 2124 1.221840 CAGAAGCCGGGTGTATGCT 59.778 57.895 7.07 0.00 36.79 3.79
1945 2127 1.768870 AGAAGCCGGGTGTATGCTTAT 59.231 47.619 7.07 0.00 44.83 1.73
1946 2128 2.172717 AGAAGCCGGGTGTATGCTTATT 59.827 45.455 7.07 0.00 44.83 1.40
1948 2130 3.012934 AGCCGGGTGTATGCTTATTTT 57.987 42.857 4.72 0.00 29.17 1.82
1949 2131 2.687935 AGCCGGGTGTATGCTTATTTTG 59.312 45.455 4.72 0.00 29.17 2.44
1950 2132 2.685897 GCCGGGTGTATGCTTATTTTGA 59.314 45.455 2.18 0.00 0.00 2.69
1951 2133 3.317993 GCCGGGTGTATGCTTATTTTGAT 59.682 43.478 2.18 0.00 0.00 2.57
1952 2134 4.517453 GCCGGGTGTATGCTTATTTTGATA 59.483 41.667 2.18 0.00 0.00 2.15
1954 2136 6.294508 GCCGGGTGTATGCTTATTTTGATATT 60.295 38.462 2.18 0.00 0.00 1.28
1956 2138 8.788806 CCGGGTGTATGCTTATTTTGATATTTA 58.211 33.333 0.00 0.00 0.00 1.40
1972 2154 8.750515 TTGATATTTATCTCATTGGTGCTTCA 57.249 30.769 0.00 0.00 33.88 3.02
1973 2155 8.750515 TGATATTTATCTCATTGGTGCTTCAA 57.249 30.769 0.00 0.00 33.88 2.69
1979 2161 9.859427 TTTATCTCATTGGTGCTTCAATTTAAG 57.141 29.630 3.03 0.00 35.40 1.85
1980 2162 6.899393 TCTCATTGGTGCTTCAATTTAAGT 57.101 33.333 1.55 0.00 35.40 2.24
1983 2165 7.014134 TCTCATTGGTGCTTCAATTTAAGTCAA 59.986 33.333 1.55 4.90 35.40 3.18
1984 2166 7.669427 TCATTGGTGCTTCAATTTAAGTCAAT 58.331 30.769 1.55 6.59 35.40 2.57
1987 2169 9.995003 ATTGGTGCTTCAATTTAAGTCAATAAA 57.005 25.926 11.98 0.00 34.01 1.40
1988 2170 9.823647 TTGGTGCTTCAATTTAAGTCAATAAAA 57.176 25.926 1.55 0.00 0.00 1.52
1989 2171 9.995003 TGGTGCTTCAATTTAAGTCAATAAAAT 57.005 25.926 1.55 0.00 0.00 1.82
2002 2184 8.801882 AAGTCAATAAAATCCACCTTTATCGA 57.198 30.769 0.00 0.00 30.41 3.59
2003 2185 8.209917 AGTCAATAAAATCCACCTTTATCGAC 57.790 34.615 0.00 0.00 34.80 4.20
2006 2188 9.893634 TCAATAAAATCCACCTTTATCGACTAA 57.106 29.630 0.00 0.00 30.41 2.24
2010 2192 7.845066 AAATCCACCTTTATCGACTAAAGAC 57.155 36.000 19.94 0.00 46.26 3.01
2011 2193 6.793505 ATCCACCTTTATCGACTAAAGACT 57.206 37.500 19.94 8.80 46.26 3.24
2012 2194 6.205101 TCCACCTTTATCGACTAAAGACTC 57.795 41.667 19.94 0.00 46.26 3.36
2013 2195 5.126707 TCCACCTTTATCGACTAAAGACTCC 59.873 44.000 19.94 0.00 46.26 3.85
2016 2198 7.201884 CCACCTTTATCGACTAAAGACTCCATA 60.202 40.741 19.94 0.00 46.26 2.74
2018 2200 8.414778 ACCTTTATCGACTAAAGACTCCATAAG 58.585 37.037 19.94 9.10 46.26 1.73
2019 2201 8.630917 CCTTTATCGACTAAAGACTCCATAAGA 58.369 37.037 19.94 0.00 46.26 2.10
2020 2202 9.453325 CTTTATCGACTAAAGACTCCATAAGAC 57.547 37.037 16.12 0.00 46.26 3.01
2021 2203 8.749026 TTATCGACTAAAGACTCCATAAGACT 57.251 34.615 0.00 0.00 0.00 3.24
2022 2204 7.648039 ATCGACTAAAGACTCCATAAGACTT 57.352 36.000 0.00 0.00 40.95 3.01
2023 2205 7.086230 TCGACTAAAGACTCCATAAGACTTC 57.914 40.000 0.00 0.00 38.75 3.01
2024 2206 6.885376 TCGACTAAAGACTCCATAAGACTTCT 59.115 38.462 0.00 0.00 38.75 2.85
2025 2207 7.393796 TCGACTAAAGACTCCATAAGACTTCTT 59.606 37.037 0.00 0.00 38.75 2.52
2027 2209 8.423906 ACTAAAGACTCCATAAGACTTCTTCA 57.576 34.615 0.00 0.00 38.75 3.02
2028 2210 8.527810 ACTAAAGACTCCATAAGACTTCTTCAG 58.472 37.037 0.00 0.00 38.75 3.02
2029 2211 6.926630 AAGACTCCATAAGACTTCTTCAGT 57.073 37.500 0.00 0.00 35.47 3.41
2030 2212 8.423906 AAAGACTCCATAAGACTTCTTCAGTA 57.576 34.615 0.00 0.00 38.75 2.74
2031 2213 7.399245 AGACTCCATAAGACTTCTTCAGTAC 57.601 40.000 0.00 0.00 35.01 2.73
2032 2214 6.948886 AGACTCCATAAGACTTCTTCAGTACA 59.051 38.462 0.00 0.00 35.01 2.90
2033 2215 7.451877 AGACTCCATAAGACTTCTTCAGTACAA 59.548 37.037 0.00 0.00 35.01 2.41
2034 2216 7.963532 ACTCCATAAGACTTCTTCAGTACAAA 58.036 34.615 0.00 0.00 35.01 2.83
2035 2217 8.429641 ACTCCATAAGACTTCTTCAGTACAAAA 58.570 33.333 0.00 0.00 35.01 2.44
2036 2218 8.833231 TCCATAAGACTTCTTCAGTACAAAAG 57.167 34.615 0.00 0.00 35.01 2.27
2037 2219 8.647796 TCCATAAGACTTCTTCAGTACAAAAGA 58.352 33.333 6.00 6.00 35.01 2.52
2038 2220 9.273016 CCATAAGACTTCTTCAGTACAAAAGAA 57.727 33.333 16.96 16.96 38.76 2.52
2048 2230 9.886132 TCTTCAGTACAAAAGAAGAAACTAGTT 57.114 29.630 1.12 1.12 43.28 2.24
2078 2260 9.496873 TTCTTTCTTAGAACGTCATCCATAAAA 57.503 29.630 0.00 0.00 37.96 1.52
2083 2265 9.226606 TCTTAGAACGTCATCCATAAAAATTGT 57.773 29.630 0.00 0.00 0.00 2.71
2086 2268 8.561738 AGAACGTCATCCATAAAAATTGTAGT 57.438 30.769 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.639094 AGACAAGACTTGGATAGATCGGG 59.361 47.826 19.16 0.00 34.12 5.14
64 65 1.767088 CTGGATCCAGATCAGCCAAGA 59.233 52.381 34.54 0.00 46.30 3.02
70 71 1.489649 ACAAGCCTGGATCCAGATCAG 59.510 52.381 38.37 26.45 46.30 2.90
129 201 7.230108 ACAATCAATGCACATCCTAATCCTTAG 59.770 37.037 0.00 0.00 0.00 2.18
132 204 5.452255 ACAATCAATGCACATCCTAATCCT 58.548 37.500 0.00 0.00 0.00 3.24
134 206 6.798482 TCAACAATCAATGCACATCCTAATC 58.202 36.000 0.00 0.00 0.00 1.75
136 208 6.377712 TGATCAACAATCAATGCACATCCTAA 59.622 34.615 0.00 0.00 41.49 2.69
139 211 5.001237 TGATCAACAATCAATGCACATCC 57.999 39.130 0.00 0.00 41.49 3.51
149 221 9.791820 GATAACATCACAATTGATCAACAATCA 57.208 29.630 13.59 0.00 46.90 2.57
168 240 3.285484 ACGGACGACTAGGTGATAACAT 58.715 45.455 0.00 0.00 0.00 2.71
169 241 2.679837 GACGGACGACTAGGTGATAACA 59.320 50.000 0.00 0.00 0.00 2.41
172 244 1.136891 TCGACGGACGACTAGGTGATA 59.863 52.381 0.00 0.00 46.45 2.15
173 245 0.107993 TCGACGGACGACTAGGTGAT 60.108 55.000 0.00 0.00 46.45 3.06
203 275 2.496070 TCTTGCTAAGCATGACGTAGGT 59.504 45.455 0.00 0.00 37.70 3.08
205 277 5.063944 ACAATTCTTGCTAAGCATGACGTAG 59.936 40.000 0.00 1.39 41.25 3.51
206 278 4.935205 ACAATTCTTGCTAAGCATGACGTA 59.065 37.500 0.00 0.00 41.25 3.57
216 288 9.920133 TGTGCAAATTATAACAATTCTTGCTAA 57.080 25.926 5.59 0.00 34.38 3.09
221 309 8.306038 TGAGCTGTGCAAATTATAACAATTCTT 58.694 29.630 0.00 0.00 0.00 2.52
223 311 7.253883 GCTGAGCTGTGCAAATTATAACAATTC 60.254 37.037 0.00 0.00 0.00 2.17
225 313 6.038356 GCTGAGCTGTGCAAATTATAACAAT 58.962 36.000 0.00 0.00 0.00 2.71
226 314 5.048154 TGCTGAGCTGTGCAAATTATAACAA 60.048 36.000 5.83 0.00 36.15 2.83
227 315 4.458642 TGCTGAGCTGTGCAAATTATAACA 59.541 37.500 5.83 0.00 36.15 2.41
231 319 3.697542 TGATGCTGAGCTGTGCAAATTAT 59.302 39.130 13.24 0.00 42.74 1.28
233 321 1.890489 TGATGCTGAGCTGTGCAAATT 59.110 42.857 13.24 0.00 42.74 1.82
242 330 3.572632 AATGTACCATGATGCTGAGCT 57.427 42.857 5.83 0.00 0.00 4.09
244 332 5.335426 GCCAATAATGTACCATGATGCTGAG 60.335 44.000 0.00 0.00 0.00 3.35
247 335 3.503363 CGCCAATAATGTACCATGATGCT 59.497 43.478 0.00 0.00 0.00 3.79
249 337 5.451908 GTTCGCCAATAATGTACCATGATG 58.548 41.667 0.00 0.00 0.00 3.07
251 339 3.880490 GGTTCGCCAATAATGTACCATGA 59.120 43.478 0.00 0.00 37.19 3.07
252 340 3.882888 AGGTTCGCCAATAATGTACCATG 59.117 43.478 0.00 0.00 40.60 3.66
253 341 3.882888 CAGGTTCGCCAATAATGTACCAT 59.117 43.478 0.00 0.00 40.60 3.55
255 343 3.275999 ACAGGTTCGCCAATAATGTACC 58.724 45.455 0.00 0.00 40.60 3.34
256 344 7.718272 TTATACAGGTTCGCCAATAATGTAC 57.282 36.000 0.00 0.00 40.60 2.90
267 404 6.619801 AGGAATCAATTTATACAGGTTCGC 57.380 37.500 0.00 0.00 0.00 4.70
269 406 8.406297 GTCCAAGGAATCAATTTATACAGGTTC 58.594 37.037 0.00 0.00 0.00 3.62
270 407 7.893302 TGTCCAAGGAATCAATTTATACAGGTT 59.107 33.333 0.00 0.00 0.00 3.50
271 408 7.410174 TGTCCAAGGAATCAATTTATACAGGT 58.590 34.615 0.00 0.00 0.00 4.00
272 409 7.880160 TGTCCAAGGAATCAATTTATACAGG 57.120 36.000 0.00 0.00 0.00 4.00
273 410 9.956720 GATTGTCCAAGGAATCAATTTATACAG 57.043 33.333 6.45 0.00 31.87 2.74
274 411 8.912988 GGATTGTCCAAGGAATCAATTTATACA 58.087 33.333 6.45 0.00 36.28 2.29
280 417 4.344104 ACGGATTGTCCAAGGAATCAATT 58.656 39.130 6.45 0.00 35.91 2.32
295 432 6.738114 AGAAATGCCAATAATGTACGGATTG 58.262 36.000 7.05 7.05 0.00 2.67
296 433 6.959639 AGAAATGCCAATAATGTACGGATT 57.040 33.333 0.00 0.00 0.00 3.01
297 434 8.635765 AATAGAAATGCCAATAATGTACGGAT 57.364 30.769 0.00 0.00 0.00 4.18
299 436 8.999431 ACTAATAGAAATGCCAATAATGTACGG 58.001 33.333 0.00 0.00 0.00 4.02
303 440 8.850156 GTGGACTAATAGAAATGCCAATAATGT 58.150 33.333 0.00 0.00 0.00 2.71
304 441 9.071276 AGTGGACTAATAGAAATGCCAATAATG 57.929 33.333 0.00 0.00 0.00 1.90
305 442 9.646522 AAGTGGACTAATAGAAATGCCAATAAT 57.353 29.630 0.00 0.00 0.00 1.28
306 443 9.474313 AAAGTGGACTAATAGAAATGCCAATAA 57.526 29.630 0.00 0.00 0.00 1.40
307 444 8.902806 CAAAGTGGACTAATAGAAATGCCAATA 58.097 33.333 0.00 0.00 0.00 1.90
308 445 7.147846 CCAAAGTGGACTAATAGAAATGCCAAT 60.148 37.037 0.00 0.00 40.96 3.16
309 446 6.152661 CCAAAGTGGACTAATAGAAATGCCAA 59.847 38.462 0.00 0.00 40.96 4.52
311 448 5.652452 ACCAAAGTGGACTAATAGAAATGCC 59.348 40.000 0.18 0.00 40.96 4.40
317 454 9.933723 GTTAGTTAACCAAAGTGGACTAATAGA 57.066 33.333 0.88 0.00 40.96 1.98
318 455 8.866956 CGTTAGTTAACCAAAGTGGACTAATAG 58.133 37.037 0.88 1.37 40.96 1.73
319 456 8.367156 ACGTTAGTTAACCAAAGTGGACTAATA 58.633 33.333 4.74 0.00 40.96 0.98
320 457 7.172019 CACGTTAGTTAACCAAAGTGGACTAAT 59.828 37.037 19.51 0.00 40.96 1.73
321 458 6.479660 CACGTTAGTTAACCAAAGTGGACTAA 59.520 38.462 19.51 2.55 40.96 2.24
322 459 5.984926 CACGTTAGTTAACCAAAGTGGACTA 59.015 40.000 19.51 0.00 40.96 2.59
323 460 4.812626 CACGTTAGTTAACCAAAGTGGACT 59.187 41.667 19.51 0.00 40.96 3.85
324 461 4.024641 CCACGTTAGTTAACCAAAGTGGAC 60.025 45.833 32.31 9.46 41.95 4.02
325 462 4.128643 CCACGTTAGTTAACCAAAGTGGA 58.871 43.478 32.31 0.00 41.95 4.02
326 463 3.251487 CCCACGTTAGTTAACCAAAGTGG 59.749 47.826 30.42 30.42 45.02 4.00
327 464 4.128643 TCCCACGTTAGTTAACCAAAGTG 58.871 43.478 20.04 20.04 32.69 3.16
328 465 4.383173 CTCCCACGTTAGTTAACCAAAGT 58.617 43.478 0.88 0.37 32.69 2.66
329 466 3.749609 CCTCCCACGTTAGTTAACCAAAG 59.250 47.826 0.88 0.00 32.69 2.77
330 467 3.742385 CCTCCCACGTTAGTTAACCAAA 58.258 45.455 0.88 0.00 32.69 3.28
331 468 2.550639 GCCTCCCACGTTAGTTAACCAA 60.551 50.000 0.88 0.00 32.69 3.67
332 469 1.002315 GCCTCCCACGTTAGTTAACCA 59.998 52.381 0.88 0.00 32.69 3.67
333 470 1.277273 AGCCTCCCACGTTAGTTAACC 59.723 52.381 0.88 0.00 32.69 2.85
334 471 2.614779 GAGCCTCCCACGTTAGTTAAC 58.385 52.381 0.00 0.00 0.00 2.01
335 472 1.551883 GGAGCCTCCCACGTTAGTTAA 59.448 52.381 0.00 0.00 0.00 2.01
336 473 1.188863 GGAGCCTCCCACGTTAGTTA 58.811 55.000 0.00 0.00 0.00 2.24
337 474 0.834687 TGGAGCCTCCCACGTTAGTT 60.835 55.000 8.62 0.00 35.03 2.24
338 475 0.617820 ATGGAGCCTCCCACGTTAGT 60.618 55.000 8.62 0.00 39.34 2.24
339 476 0.105039 GATGGAGCCTCCCACGTTAG 59.895 60.000 8.62 0.00 39.34 2.34
340 477 0.325296 AGATGGAGCCTCCCACGTTA 60.325 55.000 8.62 0.00 39.34 3.18
341 478 1.613630 AGATGGAGCCTCCCACGTT 60.614 57.895 8.62 0.00 39.34 3.99
342 479 2.039624 AGATGGAGCCTCCCACGT 59.960 61.111 8.62 0.00 39.34 4.49
343 480 2.818132 GAGATGGAGCCTCCCACG 59.182 66.667 8.62 0.00 39.34 4.94
344 481 1.118356 ATCGAGATGGAGCCTCCCAC 61.118 60.000 8.62 2.09 39.34 4.61
345 482 0.829602 GATCGAGATGGAGCCTCCCA 60.830 60.000 8.62 0.00 41.05 4.37
346 483 1.540435 GGATCGAGATGGAGCCTCCC 61.540 65.000 8.62 0.00 39.40 4.30
347 484 1.971418 GGATCGAGATGGAGCCTCC 59.029 63.158 2.98 2.98 39.40 4.30
350 487 0.829602 TGGAGGATCGAGATGGAGCC 60.830 60.000 0.00 0.00 42.82 4.70
351 488 0.602562 CTGGAGGATCGAGATGGAGC 59.397 60.000 0.00 0.00 44.45 4.70
352 489 2.284754 TCTGGAGGATCGAGATGGAG 57.715 55.000 0.00 0.00 45.33 3.86
358 495 5.847304 TCATAAACAATCTGGAGGATCGAG 58.153 41.667 0.00 0.00 42.88 4.04
359 496 5.869649 TCATAAACAATCTGGAGGATCGA 57.130 39.130 0.00 0.00 34.37 3.59
360 497 8.783833 ATATTCATAAACAATCTGGAGGATCG 57.216 34.615 0.00 0.00 34.37 3.69
362 499 9.305555 CCAATATTCATAAACAATCTGGAGGAT 57.694 33.333 0.00 0.00 35.97 3.24
363 500 8.501904 TCCAATATTCATAAACAATCTGGAGGA 58.498 33.333 0.00 0.00 0.00 3.71
364 501 8.696043 TCCAATATTCATAAACAATCTGGAGG 57.304 34.615 0.00 0.00 0.00 4.30
365 502 8.295288 GCTCCAATATTCATAAACAATCTGGAG 58.705 37.037 13.99 13.99 41.38 3.86
366 503 7.041167 CGCTCCAATATTCATAAACAATCTGGA 60.041 37.037 0.00 0.00 30.28 3.86
367 504 7.080099 CGCTCCAATATTCATAAACAATCTGG 58.920 38.462 0.00 0.00 0.00 3.86
368 505 6.580041 GCGCTCCAATATTCATAAACAATCTG 59.420 38.462 0.00 0.00 0.00 2.90
369 506 6.262944 TGCGCTCCAATATTCATAAACAATCT 59.737 34.615 9.73 0.00 0.00 2.40
370 507 6.437928 TGCGCTCCAATATTCATAAACAATC 58.562 36.000 9.73 0.00 0.00 2.67
371 508 6.389830 TGCGCTCCAATATTCATAAACAAT 57.610 33.333 9.73 0.00 0.00 2.71
372 509 5.826601 TGCGCTCCAATATTCATAAACAA 57.173 34.783 9.73 0.00 0.00 2.83
373 510 5.826601 TTGCGCTCCAATATTCATAAACA 57.173 34.783 9.73 0.00 0.00 2.83
374 511 6.197096 CAGTTTGCGCTCCAATATTCATAAAC 59.803 38.462 9.73 5.99 32.49 2.01
375 512 6.127758 ACAGTTTGCGCTCCAATATTCATAAA 60.128 34.615 9.73 0.00 32.49 1.40
376 513 5.356751 ACAGTTTGCGCTCCAATATTCATAA 59.643 36.000 9.73 0.00 32.49 1.90
377 514 4.881273 ACAGTTTGCGCTCCAATATTCATA 59.119 37.500 9.73 0.00 32.49 2.15
378 515 3.696051 ACAGTTTGCGCTCCAATATTCAT 59.304 39.130 9.73 0.00 32.49 2.57
379 516 3.081061 ACAGTTTGCGCTCCAATATTCA 58.919 40.909 9.73 0.00 32.49 2.57
380 517 3.429085 CACAGTTTGCGCTCCAATATTC 58.571 45.455 9.73 0.00 32.49 1.75
381 518 2.164219 CCACAGTTTGCGCTCCAATATT 59.836 45.455 9.73 0.00 32.49 1.28
382 519 1.745087 CCACAGTTTGCGCTCCAATAT 59.255 47.619 9.73 0.00 32.49 1.28
383 520 1.164411 CCACAGTTTGCGCTCCAATA 58.836 50.000 9.73 0.00 32.49 1.90
384 521 0.537143 TCCACAGTTTGCGCTCCAAT 60.537 50.000 9.73 0.00 32.49 3.16
385 522 0.537143 ATCCACAGTTTGCGCTCCAA 60.537 50.000 9.73 0.00 0.00 3.53
386 523 0.955428 GATCCACAGTTTGCGCTCCA 60.955 55.000 9.73 0.00 0.00 3.86
387 524 0.674895 AGATCCACAGTTTGCGCTCC 60.675 55.000 9.73 0.00 0.00 4.70
388 525 2.010145 TAGATCCACAGTTTGCGCTC 57.990 50.000 9.73 0.00 0.00 5.03
389 526 2.472695 TTAGATCCACAGTTTGCGCT 57.527 45.000 9.73 0.00 0.00 5.92
390 527 3.764885 ATTTAGATCCACAGTTTGCGC 57.235 42.857 0.00 0.00 0.00 6.09
391 528 7.128331 CAGATAATTTAGATCCACAGTTTGCG 58.872 38.462 0.00 0.00 0.00 4.85
392 529 7.420800 CCAGATAATTTAGATCCACAGTTTGC 58.579 38.462 0.00 0.00 0.00 3.68
393 530 7.284034 AGCCAGATAATTTAGATCCACAGTTTG 59.716 37.037 0.00 0.00 0.00 2.93
394 531 7.349598 AGCCAGATAATTTAGATCCACAGTTT 58.650 34.615 0.00 0.00 0.00 2.66
395 532 6.904626 AGCCAGATAATTTAGATCCACAGTT 58.095 36.000 0.00 0.00 0.00 3.16
396 533 6.506538 AGCCAGATAATTTAGATCCACAGT 57.493 37.500 0.00 0.00 0.00 3.55
397 534 6.293845 GCAAGCCAGATAATTTAGATCCACAG 60.294 42.308 0.00 0.00 0.00 3.66
398 535 5.532406 GCAAGCCAGATAATTTAGATCCACA 59.468 40.000 0.00 0.00 0.00 4.17
399 536 5.532406 TGCAAGCCAGATAATTTAGATCCAC 59.468 40.000 0.00 0.00 0.00 4.02
400 537 5.532406 GTGCAAGCCAGATAATTTAGATCCA 59.468 40.000 0.00 0.00 0.00 3.41
401 538 5.048434 GGTGCAAGCCAGATAATTTAGATCC 60.048 44.000 0.00 0.00 0.00 3.36
402 539 5.532406 TGGTGCAAGCCAGATAATTTAGATC 59.468 40.000 0.00 0.00 33.97 2.75
403 540 5.448654 TGGTGCAAGCCAGATAATTTAGAT 58.551 37.500 0.00 0.00 33.97 1.98
404 541 4.854173 TGGTGCAAGCCAGATAATTTAGA 58.146 39.130 0.00 0.00 33.97 2.10
427 564 3.003275 TCGGTCTTCAGAAAATGTGCAAC 59.997 43.478 0.00 0.00 37.35 4.17
438 575 1.118965 TGGCACCTTCGGTCTTCAGA 61.119 55.000 0.00 0.00 31.02 3.27
445 582 2.099405 CCAATTAATGGCACCTTCGGT 58.901 47.619 0.00 0.00 43.80 4.69
446 583 2.869233 CCAATTAATGGCACCTTCGG 57.131 50.000 0.00 0.00 43.80 4.30
464 601 4.270084 TCGCATTGATTCGTTTATCACTCC 59.730 41.667 0.00 0.00 34.41 3.85
467 604 4.892655 TGTCGCATTGATTCGTTTATCAC 58.107 39.130 0.00 0.00 34.41 3.06
469 606 5.389642 TCTGTCGCATTGATTCGTTTATC 57.610 39.130 0.00 0.00 0.00 1.75
470 607 4.260375 GCTCTGTCGCATTGATTCGTTTAT 60.260 41.667 0.00 0.00 0.00 1.40
471 608 3.062099 GCTCTGTCGCATTGATTCGTTTA 59.938 43.478 0.00 0.00 0.00 2.01
474 611 1.002366 GCTCTGTCGCATTGATTCGT 58.998 50.000 0.00 0.00 0.00 3.85
476 613 3.125829 TGAAAGCTCTGTCGCATTGATTC 59.874 43.478 0.00 0.00 0.00 2.52
478 615 2.417933 GTGAAAGCTCTGTCGCATTGAT 59.582 45.455 0.00 0.00 0.00 2.57
479 616 1.800586 GTGAAAGCTCTGTCGCATTGA 59.199 47.619 0.00 0.00 0.00 2.57
480 617 1.532437 TGTGAAAGCTCTGTCGCATTG 59.468 47.619 0.00 0.00 29.56 2.82
481 618 1.532868 GTGTGAAAGCTCTGTCGCATT 59.467 47.619 6.59 0.00 36.70 3.56
485 622 2.473816 TGAAGTGTGAAAGCTCTGTCG 58.526 47.619 0.00 0.00 0.00 4.35
486 623 3.722147 TCTGAAGTGTGAAAGCTCTGTC 58.278 45.455 0.00 0.00 0.00 3.51
487 624 3.827008 TCTGAAGTGTGAAAGCTCTGT 57.173 42.857 0.00 0.00 0.00 3.41
488 625 3.683822 GGATCTGAAGTGTGAAAGCTCTG 59.316 47.826 0.00 0.00 0.00 3.35
489 626 3.616076 CGGATCTGAAGTGTGAAAGCTCT 60.616 47.826 0.00 0.00 0.00 4.09
490 627 2.670414 CGGATCTGAAGTGTGAAAGCTC 59.330 50.000 0.00 0.00 0.00 4.09
491 628 2.037772 ACGGATCTGAAGTGTGAAAGCT 59.962 45.455 9.00 0.00 0.00 3.74
492 629 2.413453 GACGGATCTGAAGTGTGAAAGC 59.587 50.000 9.00 0.00 0.00 3.51
493 630 3.919216 AGACGGATCTGAAGTGTGAAAG 58.081 45.455 9.00 0.00 32.29 2.62
494 631 4.336889 AAGACGGATCTGAAGTGTGAAA 57.663 40.909 9.00 0.00 34.48 2.69
495 632 4.279922 TGTAAGACGGATCTGAAGTGTGAA 59.720 41.667 9.00 0.00 34.48 3.18
496 633 3.824443 TGTAAGACGGATCTGAAGTGTGA 59.176 43.478 9.00 0.00 34.48 3.58
497 634 4.169508 CTGTAAGACGGATCTGAAGTGTG 58.830 47.826 9.00 0.00 34.48 3.82
498 635 3.367498 GCTGTAAGACGGATCTGAAGTGT 60.367 47.826 9.00 0.00 34.48 3.55
499 636 3.182967 GCTGTAAGACGGATCTGAAGTG 58.817 50.000 9.00 0.00 34.48 3.16
500 637 2.826128 TGCTGTAAGACGGATCTGAAGT 59.174 45.455 9.00 0.00 34.48 3.01
501 638 3.510388 TGCTGTAAGACGGATCTGAAG 57.490 47.619 9.00 0.00 34.48 3.02
502 639 3.953712 TTGCTGTAAGACGGATCTGAA 57.046 42.857 9.00 0.00 34.48 3.02
503 640 3.785486 CATTGCTGTAAGACGGATCTGA 58.215 45.455 9.00 0.00 34.48 3.27
504 641 2.286294 GCATTGCTGTAAGACGGATCTG 59.714 50.000 0.16 0.00 34.48 2.90
505 642 2.093500 TGCATTGCTGTAAGACGGATCT 60.093 45.455 10.49 0.00 34.07 2.75
506 643 2.279741 TGCATTGCTGTAAGACGGATC 58.720 47.619 10.49 0.00 34.07 3.36
507 644 2.401583 TGCATTGCTGTAAGACGGAT 57.598 45.000 10.49 0.00 34.07 4.18
508 645 2.177394 TTGCATTGCTGTAAGACGGA 57.823 45.000 10.49 0.00 34.07 4.69
509 646 2.419673 TCATTGCATTGCTGTAAGACGG 59.580 45.455 10.49 0.00 34.07 4.79
510 647 3.419915 GTCATTGCATTGCTGTAAGACG 58.580 45.455 10.49 0.00 34.07 4.18
511 648 3.419915 CGTCATTGCATTGCTGTAAGAC 58.580 45.455 10.49 9.50 34.07 3.01
512 649 2.159531 GCGTCATTGCATTGCTGTAAGA 60.160 45.455 10.49 0.00 31.95 2.10
513 650 2.179589 GCGTCATTGCATTGCTGTAAG 58.820 47.619 10.49 0.00 30.17 2.34
514 651 1.465521 CGCGTCATTGCATTGCTGTAA 60.466 47.619 10.49 0.00 34.15 2.41
515 652 0.096802 CGCGTCATTGCATTGCTGTA 59.903 50.000 10.49 0.00 34.15 2.74
516 653 1.154169 CGCGTCATTGCATTGCTGT 60.154 52.632 10.49 0.00 34.15 4.40
517 654 0.096802 TACGCGTCATTGCATTGCTG 59.903 50.000 18.63 0.65 34.15 4.41
518 655 0.801872 TTACGCGTCATTGCATTGCT 59.198 45.000 18.63 0.00 34.15 3.91
519 656 1.182673 CTTACGCGTCATTGCATTGC 58.817 50.000 18.63 0.46 34.15 3.56
520 657 2.430956 GACTTACGCGTCATTGCATTG 58.569 47.619 18.63 2.08 34.11 2.82
521 658 1.060553 CGACTTACGCGTCATTGCATT 59.939 47.619 18.63 0.00 33.54 3.56
522 659 0.645355 CGACTTACGCGTCATTGCAT 59.355 50.000 18.63 0.00 33.54 3.96
523 660 0.665068 ACGACTTACGCGTCATTGCA 60.665 50.000 18.63 0.00 46.94 4.08
524 661 0.246757 CACGACTTACGCGTCATTGC 60.247 55.000 18.63 1.52 46.94 3.56
525 662 0.365523 CCACGACTTACGCGTCATTG 59.634 55.000 18.63 9.12 46.94 2.82
526 663 0.241749 TCCACGACTTACGCGTCATT 59.758 50.000 18.63 0.00 46.94 2.57
527 664 0.454600 ATCCACGACTTACGCGTCAT 59.545 50.000 18.63 1.12 46.94 3.06
532 669 1.859080 GGATTGATCCACGACTTACGC 59.141 52.381 5.14 0.00 46.38 4.42
551 688 2.228059 GCAGTCTTGGATGGATCATGG 58.772 52.381 0.00 0.00 0.00 3.66
555 692 1.964552 CCTGCAGTCTTGGATGGATC 58.035 55.000 13.81 0.00 0.00 3.36
556 693 0.106819 GCCTGCAGTCTTGGATGGAT 60.107 55.000 13.81 0.00 0.00 3.41
560 698 1.302285 CCAGCCTGCAGTCTTGGAT 59.698 57.895 18.56 0.00 0.00 3.41
565 703 2.965716 AAAACGCCAGCCTGCAGTCT 62.966 55.000 13.81 0.81 0.00 3.24
567 705 2.519302 AAAACGCCAGCCTGCAGT 60.519 55.556 13.81 0.00 0.00 4.40
586 724 4.378774 TCCATGAAAATTGCAACTTGGTG 58.621 39.130 0.00 0.00 0.00 4.17
587 725 4.686191 TCCATGAAAATTGCAACTTGGT 57.314 36.364 0.00 0.00 0.00 3.67
603 741 1.402968 CAAGGATTCGTGCCTTCCATG 59.597 52.381 0.00 0.00 43.68 3.66
604 742 1.683011 CCAAGGATTCGTGCCTTCCAT 60.683 52.381 0.00 0.00 43.68 3.41
606 744 0.035439 TCCAAGGATTCGTGCCTTCC 60.035 55.000 0.00 0.00 43.68 3.46
607 745 1.740025 CTTCCAAGGATTCGTGCCTTC 59.260 52.381 0.00 0.00 43.68 3.46
612 750 4.003648 AGTTAAGCTTCCAAGGATTCGTG 58.996 43.478 0.00 0.00 0.00 4.35
613 751 4.003648 CAGTTAAGCTTCCAAGGATTCGT 58.996 43.478 0.00 0.00 0.00 3.85
635 789 3.417690 GCACATGGATGCTTCTCTTTC 57.582 47.619 0.00 0.00 42.62 2.62
661 815 2.534042 ACAGAAGTAGCTAGCCCAGA 57.466 50.000 12.13 0.00 0.00 3.86
691 845 9.074576 ACCCAAACCGAATATTTAAATATCCTC 57.925 33.333 18.72 13.28 31.42 3.71
692 846 8.856103 CACCCAAACCGAATATTTAAATATCCT 58.144 33.333 18.72 6.63 31.42 3.24
693 847 7.597369 GCACCCAAACCGAATATTTAAATATCC 59.403 37.037 18.72 7.65 31.42 2.59
694 848 8.138712 TGCACCCAAACCGAATATTTAAATATC 58.861 33.333 18.72 12.14 31.42 1.63
695 849 8.012957 TGCACCCAAACCGAATATTTAAATAT 57.987 30.769 13.85 13.85 33.14 1.28
696 850 7.406031 TGCACCCAAACCGAATATTTAAATA 57.594 32.000 10.27 10.27 0.00 1.40
697 851 6.287589 TGCACCCAAACCGAATATTTAAAT 57.712 33.333 5.89 5.89 0.00 1.40
698 852 5.723672 TGCACCCAAACCGAATATTTAAA 57.276 34.783 0.00 0.00 0.00 1.52
699 853 5.244178 ACTTGCACCCAAACCGAATATTTAA 59.756 36.000 0.00 0.00 0.00 1.52
700 854 4.767928 ACTTGCACCCAAACCGAATATTTA 59.232 37.500 0.00 0.00 0.00 1.40
701 855 3.576550 ACTTGCACCCAAACCGAATATTT 59.423 39.130 0.00 0.00 0.00 1.40
702 856 3.161866 ACTTGCACCCAAACCGAATATT 58.838 40.909 0.00 0.00 0.00 1.28
703 857 2.802719 ACTTGCACCCAAACCGAATAT 58.197 42.857 0.00 0.00 0.00 1.28
704 858 2.279935 ACTTGCACCCAAACCGAATA 57.720 45.000 0.00 0.00 0.00 1.75
705 859 1.068434 CAACTTGCACCCAAACCGAAT 59.932 47.619 0.00 0.00 0.00 3.34
706 860 0.457851 CAACTTGCACCCAAACCGAA 59.542 50.000 0.00 0.00 0.00 4.30
708 862 1.025812 TACAACTTGCACCCAAACCG 58.974 50.000 0.00 0.00 0.00 4.44
709 863 4.219725 ACATATACAACTTGCACCCAAACC 59.780 41.667 0.00 0.00 0.00 3.27
712 866 6.485313 GCTATACATATACAACTTGCACCCAA 59.515 38.462 0.00 0.00 0.00 4.12
713 867 5.995282 GCTATACATATACAACTTGCACCCA 59.005 40.000 0.00 0.00 0.00 4.51
715 869 6.089551 CGAGCTATACATATACAACTTGCACC 59.910 42.308 0.00 0.00 0.00 5.01
716 870 6.641314 ACGAGCTATACATATACAACTTGCAC 59.359 38.462 0.00 0.00 0.00 4.57
717 871 6.745116 ACGAGCTATACATATACAACTTGCA 58.255 36.000 0.00 0.00 0.00 4.08
718 872 7.381408 TCAACGAGCTATACATATACAACTTGC 59.619 37.037 0.00 0.00 0.00 4.01
719 873 8.691727 GTCAACGAGCTATACATATACAACTTG 58.308 37.037 0.00 0.00 0.00 3.16
720 874 7.590322 CGTCAACGAGCTATACATATACAACTT 59.410 37.037 0.00 0.00 43.02 2.66
722 876 6.854892 ACGTCAACGAGCTATACATATACAAC 59.145 38.462 9.88 0.00 43.02 3.32
723 877 6.962686 ACGTCAACGAGCTATACATATACAA 58.037 36.000 9.88 0.00 43.02 2.41
724 878 6.549912 ACGTCAACGAGCTATACATATACA 57.450 37.500 9.88 0.00 43.02 2.29
725 879 6.304922 CCAACGTCAACGAGCTATACATATAC 59.695 42.308 9.88 0.00 43.02 1.47
727 881 5.220381 CCAACGTCAACGAGCTATACATAT 58.780 41.667 9.88 0.00 43.02 1.78
728 882 4.498513 CCCAACGTCAACGAGCTATACATA 60.499 45.833 9.88 0.00 43.02 2.29
730 884 2.416296 CCCAACGTCAACGAGCTATACA 60.416 50.000 9.88 0.00 43.02 2.29
731 885 2.190981 CCCAACGTCAACGAGCTATAC 58.809 52.381 9.88 0.00 43.02 1.47
750 908 4.782019 TCAAACATATGACCAACTTGCC 57.218 40.909 10.38 0.00 0.00 4.52
751 909 5.163513 CCTTCAAACATATGACCAACTTGC 58.836 41.667 10.38 0.00 0.00 4.01
755 913 4.485163 GCACCTTCAAACATATGACCAAC 58.515 43.478 10.38 0.00 0.00 3.77
765 923 3.763360 CCATCTATTGGCACCTTCAAACA 59.237 43.478 0.00 0.00 39.09 2.83
773 931 3.297134 TTTCCTCCATCTATTGGCACC 57.703 47.619 0.00 0.00 46.01 5.01
783 941 4.695455 TCGTTTCTGACATTTTCCTCCATC 59.305 41.667 0.00 0.00 0.00 3.51
786 944 5.392057 GGATTCGTTTCTGACATTTTCCTCC 60.392 44.000 0.00 0.00 0.00 4.30
787 945 5.181245 TGGATTCGTTTCTGACATTTTCCTC 59.819 40.000 0.00 0.00 0.00 3.71
796 954 3.181530 CGTCACATGGATTCGTTTCTGAC 60.182 47.826 0.00 0.00 0.00 3.51
798 956 2.993220 TCGTCACATGGATTCGTTTCTG 59.007 45.455 0.00 0.00 0.00 3.02
800 958 2.222819 GCTCGTCACATGGATTCGTTTC 60.223 50.000 0.00 0.00 0.00 2.78
801 959 1.732259 GCTCGTCACATGGATTCGTTT 59.268 47.619 0.00 0.00 0.00 3.60
804 962 1.645034 AAGCTCGTCACATGGATTCG 58.355 50.000 0.00 0.00 0.00 3.34
805 963 3.002791 TGAAAGCTCGTCACATGGATTC 58.997 45.455 0.00 0.00 0.00 2.52
842 1001 1.397390 GCTTGCCCCTTCATCCATGG 61.397 60.000 4.97 4.97 0.00 3.66
888 1051 2.189257 CATTCGGTCGGGATGGCA 59.811 61.111 0.00 0.00 0.00 4.92
890 1053 0.320771 GATCCATTCGGTCGGGATGG 60.321 60.000 10.85 10.85 41.39 3.51
891 1054 0.320771 GGATCCATTCGGTCGGGATG 60.321 60.000 6.95 0.00 41.39 3.51
892 1055 0.762842 TGGATCCATTCGGTCGGGAT 60.763 55.000 11.44 0.00 43.92 3.85
893 1056 0.762842 ATGGATCCATTCGGTCGGGA 60.763 55.000 22.15 0.00 31.82 5.14
894 1057 0.320771 GATGGATCCATTCGGTCGGG 60.321 60.000 27.93 0.00 36.70 5.14
895 1058 0.667487 CGATGGATCCATTCGGTCGG 60.667 60.000 27.93 8.80 36.70 4.79
896 1059 0.313987 TCGATGGATCCATTCGGTCG 59.686 55.000 29.71 26.76 36.70 4.79
897 1060 1.937108 GCTCGATGGATCCATTCGGTC 60.937 57.143 29.71 22.20 36.70 4.79
898 1061 0.034059 GCTCGATGGATCCATTCGGT 59.966 55.000 29.71 13.81 36.70 4.69
899 1062 0.033920 TGCTCGATGGATCCATTCGG 59.966 55.000 29.71 24.01 36.70 4.30
900 1063 1.143305 GTGCTCGATGGATCCATTCG 58.857 55.000 27.93 27.41 36.70 3.34
901 1064 1.202687 TGGTGCTCGATGGATCCATTC 60.203 52.381 27.93 18.68 36.70 2.67
902 1065 0.839277 TGGTGCTCGATGGATCCATT 59.161 50.000 27.93 12.23 36.70 3.16
903 1066 0.839277 TTGGTGCTCGATGGATCCAT 59.161 50.000 27.66 27.66 39.69 3.41
904 1067 0.107703 GTTGGTGCTCGATGGATCCA 60.108 55.000 18.88 18.88 0.00 3.41
905 1068 0.815615 GGTTGGTGCTCGATGGATCC 60.816 60.000 4.20 4.20 0.00 3.36
906 1069 0.107703 TGGTTGGTGCTCGATGGATC 60.108 55.000 0.00 0.00 0.00 3.36
907 1070 0.107508 CTGGTTGGTGCTCGATGGAT 60.108 55.000 0.00 0.00 0.00 3.41
908 1071 1.296392 CTGGTTGGTGCTCGATGGA 59.704 57.895 0.00 0.00 0.00 3.41
923 1093 3.772932 TCGTACGTAGGTTAATTGCTGG 58.227 45.455 16.05 0.00 0.00 4.85
934 1104 4.568359 TCACTAGCTAAGTTCGTACGTAGG 59.432 45.833 16.05 8.97 36.99 3.18
938 1108 4.962751 GTGATCACTAGCTAAGTTCGTACG 59.037 45.833 18.83 9.53 35.76 3.67
944 1114 5.243954 TGTGTGAGTGATCACTAGCTAAGTT 59.756 40.000 27.95 3.05 42.66 2.66
947 1117 4.522789 TGTGTGTGAGTGATCACTAGCTAA 59.477 41.667 27.95 11.58 42.66 3.09
961 1131 2.998670 GGTGATCTGATGTGTGTGTGAG 59.001 50.000 0.00 0.00 0.00 3.51
971 1141 5.095145 TCTTCTTTGGAGGTGATCTGATG 57.905 43.478 0.00 0.00 0.00 3.07
984 1154 5.105635 TGCTGCCATTATCTTTCTTCTTTGG 60.106 40.000 0.00 0.00 0.00 3.28
989 1159 5.759963 CTGATGCTGCCATTATCTTTCTTC 58.240 41.667 0.00 0.00 0.00 2.87
1006 1176 1.566882 CTATGCTCGCTGGCTGATGC 61.567 60.000 0.00 0.00 38.76 3.91
1009 1179 1.142531 CACTATGCTCGCTGGCTGA 59.857 57.895 0.00 0.00 0.00 4.26
1010 1180 2.532256 GCACTATGCTCGCTGGCTG 61.532 63.158 0.00 0.00 40.96 4.85
1012 1182 3.275338 GGCACTATGCTCGCTGGC 61.275 66.667 0.13 0.00 44.28 4.85
1016 1186 3.323136 CGACGGCACTATGCTCGC 61.323 66.667 10.31 4.73 44.28 5.03
1020 1190 1.409412 CTATGTCGACGGCACTATGC 58.591 55.000 3.27 0.00 44.08 3.14
1025 1195 3.384927 GTGCTATGTCGACGGCAC 58.615 61.111 30.16 30.16 45.93 5.01
1038 1208 0.458543 CAGCAATCGTCGTAGGTGCT 60.459 55.000 8.26 8.26 46.16 4.40
1040 1210 1.390123 CAACAGCAATCGTCGTAGGTG 59.610 52.381 10.33 10.33 35.74 4.00
1041 1211 1.000506 ACAACAGCAATCGTCGTAGGT 59.999 47.619 0.00 0.00 0.00 3.08
1042 1212 1.654105 GACAACAGCAATCGTCGTAGG 59.346 52.381 0.00 0.00 0.00 3.18
1045 1215 1.526887 CTTGACAACAGCAATCGTCGT 59.473 47.619 0.00 0.00 0.00 4.34
1046 1216 1.722751 GCTTGACAACAGCAATCGTCG 60.723 52.381 0.00 0.00 0.00 5.12
1047 1217 1.400242 GGCTTGACAACAGCAATCGTC 60.400 52.381 1.74 0.00 0.00 4.20
1052 1222 2.721231 GCGGCTTGACAACAGCAA 59.279 55.556 1.74 0.00 0.00 3.91
1055 1225 3.726517 CCGGCGGCTTGACAACAG 61.727 66.667 15.42 0.00 0.00 3.16
1094 1276 2.743928 CCGACAGCACCTTCTGGC 60.744 66.667 0.00 0.00 38.73 4.85
1167 1349 2.436646 CTGAAGGACGGCGCCAAT 60.437 61.111 28.98 14.60 0.00 3.16
1321 1503 5.532032 TGTTGAATATGTTCATGCCATCGAT 59.468 36.000 5.66 0.00 43.49 3.59
1325 1507 7.391275 TCGATATGTTGAATATGTTCATGCCAT 59.609 33.333 5.66 10.54 43.49 4.40
1326 1508 6.709846 TCGATATGTTGAATATGTTCATGCCA 59.290 34.615 5.66 4.33 43.49 4.92
1332 1514 6.089551 CGTCCCTCGATATGTTGAATATGTTC 59.910 42.308 0.00 0.00 42.86 3.18
1352 1534 2.104170 ACTCCTTCTTCTGATCGTCCC 58.896 52.381 0.00 0.00 0.00 4.46
1356 1538 3.766676 TCGAACTCCTTCTTCTGATCG 57.233 47.619 0.00 0.00 0.00 3.69
1359 1541 2.028930 GCCTTCGAACTCCTTCTTCTGA 60.029 50.000 0.00 0.00 0.00 3.27
1381 1563 0.891373 TTCTTGAGCTCGGACTCCAG 59.109 55.000 9.64 2.63 35.72 3.86
1405 1587 6.596888 TGAGAAAAGTCCTGCTTCTTGATATG 59.403 38.462 0.00 0.00 36.17 1.78
1406 1588 6.597280 GTGAGAAAAGTCCTGCTTCTTGATAT 59.403 38.462 0.00 0.00 36.17 1.63
1545 1727 2.044946 AAGACGGCCATTCCCAGC 60.045 61.111 2.24 0.00 0.00 4.85
1623 1805 0.711670 CGTCATAACCGTCACCGTTG 59.288 55.000 0.00 0.00 0.00 4.10
1654 1836 0.924090 GATGGTGATTGAGCGACGAC 59.076 55.000 0.00 0.00 0.00 4.34
1655 1837 0.530288 TGATGGTGATTGAGCGACGA 59.470 50.000 0.00 0.00 0.00 4.20
1656 1838 1.061131 GTTGATGGTGATTGAGCGACG 59.939 52.381 0.00 0.00 0.00 5.12
1657 1839 2.094894 CAGTTGATGGTGATTGAGCGAC 59.905 50.000 0.00 0.00 0.00 5.19
1658 1840 2.289631 ACAGTTGATGGTGATTGAGCGA 60.290 45.455 0.00 0.00 0.00 4.93
1659 1841 2.079158 ACAGTTGATGGTGATTGAGCG 58.921 47.619 0.00 0.00 0.00 5.03
1660 1842 3.076621 TGACAGTTGATGGTGATTGAGC 58.923 45.455 0.00 0.00 0.00 4.26
1661 1843 4.321718 AGTGACAGTTGATGGTGATTGAG 58.678 43.478 0.00 0.00 0.00 3.02
1663 1845 6.748333 AATAGTGACAGTTGATGGTGATTG 57.252 37.500 0.00 0.00 0.00 2.67
1665 1847 6.946340 TGTAATAGTGACAGTTGATGGTGAT 58.054 36.000 0.00 0.00 0.00 3.06
1668 1850 9.162764 GTATTTGTAATAGTGACAGTTGATGGT 57.837 33.333 0.00 0.00 0.00 3.55
1669 1851 9.161629 TGTATTTGTAATAGTGACAGTTGATGG 57.838 33.333 0.00 0.00 0.00 3.51
1674 1856 7.392393 GGGGTTGTATTTGTAATAGTGACAGTT 59.608 37.037 0.00 0.00 0.00 3.16
1678 1860 6.094464 GGTGGGGTTGTATTTGTAATAGTGAC 59.906 42.308 0.00 0.00 0.00 3.67
1679 1861 6.181908 GGTGGGGTTGTATTTGTAATAGTGA 58.818 40.000 0.00 0.00 0.00 3.41
1684 1866 4.161377 GCATGGTGGGGTTGTATTTGTAAT 59.839 41.667 0.00 0.00 0.00 1.89
1685 1867 3.511934 GCATGGTGGGGTTGTATTTGTAA 59.488 43.478 0.00 0.00 0.00 2.41
1691 1873 1.221213 AGGGCATGGTGGGGTTGTAT 61.221 55.000 0.00 0.00 0.00 2.29
1693 1875 1.854979 TAGGGCATGGTGGGGTTGT 60.855 57.895 0.00 0.00 0.00 3.32
1694 1876 1.076777 CTAGGGCATGGTGGGGTTG 60.077 63.158 0.00 0.00 0.00 3.77
1695 1877 0.627469 ATCTAGGGCATGGTGGGGTT 60.627 55.000 0.00 0.00 0.00 4.11
1696 1878 1.006092 ATCTAGGGCATGGTGGGGT 59.994 57.895 0.00 0.00 0.00 4.95
1697 1879 1.355718 ACATCTAGGGCATGGTGGGG 61.356 60.000 0.00 0.00 0.00 4.96
1698 1880 0.179009 CACATCTAGGGCATGGTGGG 60.179 60.000 0.00 0.00 0.00 4.61
1699 1881 3.409201 CACATCTAGGGCATGGTGG 57.591 57.895 0.00 0.00 0.00 4.61
1739 1921 7.552687 TCAAGGAAATAGAAGACGCAATACATT 59.447 33.333 0.00 0.00 0.00 2.71
1745 1927 4.894784 AGTCAAGGAAATAGAAGACGCAA 58.105 39.130 0.00 0.00 0.00 4.85
1746 1928 4.537135 AGTCAAGGAAATAGAAGACGCA 57.463 40.909 0.00 0.00 0.00 5.24
1752 1934 7.672660 TGTCAGTAGGTAGTCAAGGAAATAGAA 59.327 37.037 0.00 0.00 0.00 2.10
1795 1977 9.985730 ATATAACGAATGAATTGGCATGAAATT 57.014 25.926 0.00 1.29 0.00 1.82
1800 1982 9.292846 CCATTATATAACGAATGAATTGGCATG 57.707 33.333 0.00 0.00 35.46 4.06
1825 2007 7.587757 CGAAGCTATGCAAGTATTCAATAAACC 59.412 37.037 0.00 0.00 0.00 3.27
1829 2011 6.288294 ACCGAAGCTATGCAAGTATTCAATA 58.712 36.000 0.00 0.00 0.00 1.90
1830 2012 5.126067 ACCGAAGCTATGCAAGTATTCAAT 58.874 37.500 0.00 0.00 0.00 2.57
1831 2013 4.513442 ACCGAAGCTATGCAAGTATTCAA 58.487 39.130 0.00 0.00 0.00 2.69
1833 2015 4.372656 AGACCGAAGCTATGCAAGTATTC 58.627 43.478 0.00 0.00 0.00 1.75
1834 2016 4.408182 AGACCGAAGCTATGCAAGTATT 57.592 40.909 0.00 0.00 0.00 1.89
1836 2018 3.056107 ACAAGACCGAAGCTATGCAAGTA 60.056 43.478 0.00 0.00 0.00 2.24
1837 2019 2.289694 ACAAGACCGAAGCTATGCAAGT 60.290 45.455 0.00 0.00 0.00 3.16
1838 2020 2.350522 ACAAGACCGAAGCTATGCAAG 58.649 47.619 0.00 0.00 0.00 4.01
1840 2022 3.819564 ATACAAGACCGAAGCTATGCA 57.180 42.857 0.00 0.00 0.00 3.96
1841 2023 3.675698 GCTATACAAGACCGAAGCTATGC 59.324 47.826 0.00 0.00 0.00 3.14
1842 2024 5.127693 AGCTATACAAGACCGAAGCTATG 57.872 43.478 0.00 0.00 38.48 2.23
1844 2026 5.348986 CAAAGCTATACAAGACCGAAGCTA 58.651 41.667 0.00 0.00 39.29 3.32
1846 2028 3.242446 GCAAAGCTATACAAGACCGAAGC 60.242 47.826 0.00 0.00 0.00 3.86
1847 2029 4.184629 AGCAAAGCTATACAAGACCGAAG 58.815 43.478 0.00 0.00 36.99 3.79
1848 2030 4.202245 AGCAAAGCTATACAAGACCGAA 57.798 40.909 0.00 0.00 36.99 4.30
1849 2031 3.887621 AGCAAAGCTATACAAGACCGA 57.112 42.857 0.00 0.00 36.99 4.69
1850 2032 4.504461 CAGTAGCAAAGCTATACAAGACCG 59.496 45.833 1.68 0.00 43.30 4.79
1851 2033 4.271291 GCAGTAGCAAAGCTATACAAGACC 59.729 45.833 1.68 0.00 43.30 3.85
1852 2034 4.271291 GGCAGTAGCAAAGCTATACAAGAC 59.729 45.833 1.68 0.00 43.30 3.01
1854 2036 4.191544 TGGCAGTAGCAAAGCTATACAAG 58.808 43.478 1.68 0.00 43.30 3.16
1857 2039 2.545946 GCTGGCAGTAGCAAAGCTATAC 59.454 50.000 17.16 0.00 43.30 1.47
1861 2043 3.993535 GCTGGCAGTAGCAAAGCT 58.006 55.556 17.16 0.00 44.22 3.74
1868 2050 3.648339 ACAAAAACATGCTGGCAGTAG 57.352 42.857 17.16 8.77 0.00 2.57
1869 2051 4.522405 ACATACAAAAACATGCTGGCAGTA 59.478 37.500 17.16 12.83 0.00 2.74
1870 2052 3.321682 ACATACAAAAACATGCTGGCAGT 59.678 39.130 17.16 0.00 0.00 4.40
1871 2053 3.676172 CACATACAAAAACATGCTGGCAG 59.324 43.478 10.94 10.94 0.00 4.85
1872 2054 3.069300 ACACATACAAAAACATGCTGGCA 59.931 39.130 0.00 0.00 0.00 4.92
1874 2056 5.523188 ACAAACACATACAAAAACATGCTGG 59.477 36.000 0.00 0.00 0.00 4.85
1875 2057 6.035866 ACACAAACACATACAAAAACATGCTG 59.964 34.615 0.00 0.00 0.00 4.41
1876 2058 6.105333 ACACAAACACATACAAAAACATGCT 58.895 32.000 0.00 0.00 0.00 3.79
1878 2060 7.737395 ACAACACAAACACATACAAAAACATG 58.263 30.769 0.00 0.00 0.00 3.21
1879 2061 7.816995 AGACAACACAAACACATACAAAAACAT 59.183 29.630 0.00 0.00 0.00 2.71
1880 2062 7.115520 CAGACAACACAAACACATACAAAAACA 59.884 33.333 0.00 0.00 0.00 2.83
1881 2063 7.115663 ACAGACAACACAAACACATACAAAAAC 59.884 33.333 0.00 0.00 0.00 2.43
1882 2064 7.115520 CACAGACAACACAAACACATACAAAAA 59.884 33.333 0.00 0.00 0.00 1.94
1883 2065 6.584184 CACAGACAACACAAACACATACAAAA 59.416 34.615 0.00 0.00 0.00 2.44
1885 2067 5.182190 ACACAGACAACACAAACACATACAA 59.818 36.000 0.00 0.00 0.00 2.41
1886 2068 4.697828 ACACAGACAACACAAACACATACA 59.302 37.500 0.00 0.00 0.00 2.29
1887 2069 5.229921 ACACAGACAACACAAACACATAC 57.770 39.130 0.00 0.00 0.00 2.39
1889 2071 4.697828 TGTACACAGACAACACAAACACAT 59.302 37.500 0.00 0.00 0.00 3.21
1890 2072 4.065789 TGTACACAGACAACACAAACACA 58.934 39.130 0.00 0.00 0.00 3.72
1891 2073 4.671880 TGTACACAGACAACACAAACAC 57.328 40.909 0.00 0.00 0.00 3.32
1892 2074 4.334203 GGATGTACACAGACAACACAAACA 59.666 41.667 0.00 0.00 31.83 2.83
1893 2075 4.574828 AGGATGTACACAGACAACACAAAC 59.425 41.667 0.00 0.00 31.83 2.93
1894 2076 4.776349 AGGATGTACACAGACAACACAAA 58.224 39.130 0.00 0.00 31.83 2.83
1895 2077 4.415881 AGGATGTACACAGACAACACAA 57.584 40.909 0.00 0.00 31.83 3.33
1897 2079 8.604035 CATAATTAGGATGTACACAGACAACAC 58.396 37.037 0.00 0.00 31.83 3.32
1899 2081 7.279981 TGCATAATTAGGATGTACACAGACAAC 59.720 37.037 0.00 0.00 31.83 3.32
1903 2085 7.360113 TCTGCATAATTAGGATGTACACAGA 57.640 36.000 0.00 0.00 0.00 3.41
1904 2086 7.307632 GCTTCTGCATAATTAGGATGTACACAG 60.308 40.741 0.00 0.00 39.41 3.66
1905 2087 6.483307 GCTTCTGCATAATTAGGATGTACACA 59.517 38.462 0.00 0.00 39.41 3.72
1906 2088 6.073003 GGCTTCTGCATAATTAGGATGTACAC 60.073 42.308 0.00 0.00 41.91 2.90
1907 2089 5.997746 GGCTTCTGCATAATTAGGATGTACA 59.002 40.000 0.00 0.00 41.91 2.90
1908 2090 5.120830 CGGCTTCTGCATAATTAGGATGTAC 59.879 44.000 0.32 0.00 41.91 2.90
1910 2092 4.067896 CGGCTTCTGCATAATTAGGATGT 58.932 43.478 0.32 0.00 41.91 3.06
1911 2093 3.438087 CCGGCTTCTGCATAATTAGGATG 59.562 47.826 0.32 0.00 41.91 3.51
1912 2094 3.560025 CCCGGCTTCTGCATAATTAGGAT 60.560 47.826 0.32 0.00 41.91 3.24
1913 2095 2.224523 CCCGGCTTCTGCATAATTAGGA 60.225 50.000 0.32 0.00 41.91 2.94
1915 2097 2.549754 CACCCGGCTTCTGCATAATTAG 59.450 50.000 0.00 0.00 41.91 1.73
1919 2101 0.906066 TACACCCGGCTTCTGCATAA 59.094 50.000 0.00 0.00 41.91 1.90
1920 2102 1.128200 ATACACCCGGCTTCTGCATA 58.872 50.000 0.00 0.00 41.91 3.14
1922 2104 1.078497 CATACACCCGGCTTCTGCA 60.078 57.895 0.00 0.00 41.91 4.41
1923 2105 2.472909 GCATACACCCGGCTTCTGC 61.473 63.158 0.00 0.00 38.76 4.26
1924 2106 0.392998 AAGCATACACCCGGCTTCTG 60.393 55.000 0.00 0.00 43.97 3.02
1925 2107 1.200519 TAAGCATACACCCGGCTTCT 58.799 50.000 0.00 0.00 43.97 2.85
1928 2110 2.687935 CAAAATAAGCATACACCCGGCT 59.312 45.455 0.00 0.00 40.14 5.52
1929 2111 2.685897 TCAAAATAAGCATACACCCGGC 59.314 45.455 0.00 0.00 0.00 6.13
1930 2112 6.817765 ATATCAAAATAAGCATACACCCGG 57.182 37.500 0.00 0.00 0.00 5.73
1946 2128 9.187996 TGAAGCACCAATGAGATAAATATCAAA 57.812 29.630 3.45 0.00 35.17 2.69
1948 2130 8.750515 TTGAAGCACCAATGAGATAAATATCA 57.249 30.769 3.45 0.00 35.17 2.15
1954 2136 9.023962 ACTTAAATTGAAGCACCAATGAGATAA 57.976 29.630 2.11 3.23 36.90 1.75
1956 2138 7.177216 TGACTTAAATTGAAGCACCAATGAGAT 59.823 33.333 2.11 0.00 36.90 2.75
1958 2140 6.680810 TGACTTAAATTGAAGCACCAATGAG 58.319 36.000 2.11 6.25 36.90 2.90
1959 2141 6.647334 TGACTTAAATTGAAGCACCAATGA 57.353 33.333 2.11 0.00 36.90 2.57
1960 2142 7.894376 ATTGACTTAAATTGAAGCACCAATG 57.106 32.000 13.43 0.00 36.90 2.82
1961 2143 9.995003 TTTATTGACTTAAATTGAAGCACCAAT 57.005 25.926 16.33 16.33 38.30 3.16
1962 2144 9.823647 TTTTATTGACTTAAATTGAAGCACCAA 57.176 25.926 2.11 5.49 0.00 3.67
1976 2158 9.893634 TCGATAAAGGTGGATTTTATTGACTTA 57.106 29.630 4.38 0.00 36.60 2.24
1977 2159 8.674607 GTCGATAAAGGTGGATTTTATTGACTT 58.325 33.333 20.50 0.00 46.47 3.01
1980 2162 9.893634 TTAGTCGATAAAGGTGGATTTTATTGA 57.106 29.630 0.00 4.38 38.03 2.57
1995 2177 9.186837 AGTCTTATGGAGTCTTTAGTCGATAAA 57.813 33.333 0.00 0.00 36.13 1.40
1997 2179 8.749026 AAGTCTTATGGAGTCTTTAGTCGATA 57.251 34.615 0.00 0.00 30.99 2.92
1998 2180 7.558444 AGAAGTCTTATGGAGTCTTTAGTCGAT 59.442 37.037 0.00 0.00 34.53 3.59
1999 2181 6.885376 AGAAGTCTTATGGAGTCTTTAGTCGA 59.115 38.462 0.00 0.00 34.53 4.20
2000 2182 7.090953 AGAAGTCTTATGGAGTCTTTAGTCG 57.909 40.000 0.00 0.00 34.53 4.18
2001 2183 8.524487 TGAAGAAGTCTTATGGAGTCTTTAGTC 58.476 37.037 0.00 0.00 34.53 2.59
2002 2184 8.423906 TGAAGAAGTCTTATGGAGTCTTTAGT 57.576 34.615 0.00 0.00 34.53 2.24
2003 2185 8.527810 ACTGAAGAAGTCTTATGGAGTCTTTAG 58.472 37.037 0.00 0.00 38.04 1.85
2006 2188 6.926630 ACTGAAGAAGTCTTATGGAGTCTT 57.073 37.500 0.00 0.00 36.62 3.01
2007 2189 6.948886 TGTACTGAAGAAGTCTTATGGAGTCT 59.051 38.462 0.00 0.00 40.56 3.24
2008 2190 7.159322 TGTACTGAAGAAGTCTTATGGAGTC 57.841 40.000 0.00 0.00 40.56 3.36
2009 2191 7.540474 TTGTACTGAAGAAGTCTTATGGAGT 57.460 36.000 0.00 0.00 40.56 3.85
2010 2192 8.833231 TTTTGTACTGAAGAAGTCTTATGGAG 57.167 34.615 0.00 0.00 40.56 3.86
2011 2193 8.647796 TCTTTTGTACTGAAGAAGTCTTATGGA 58.352 33.333 8.45 0.00 40.56 3.41
2012 2194 8.833231 TCTTTTGTACTGAAGAAGTCTTATGG 57.167 34.615 8.45 0.00 40.56 2.74
2022 2204 9.886132 AACTAGTTTCTTCTTTTGTACTGAAGA 57.114 29.630 1.12 13.17 42.74 2.87
2052 2234 9.496873 TTTTATGGATGACGTTCTAAGAAAGAA 57.503 29.630 0.00 0.00 42.07 2.52
2057 2239 9.226606 ACAATTTTTATGGATGACGTTCTAAGA 57.773 29.630 0.00 0.00 0.00 2.10
2060 2242 9.661563 ACTACAATTTTTATGGATGACGTTCTA 57.338 29.630 0.00 0.00 0.00 2.10
2061 2243 8.561738 ACTACAATTTTTATGGATGACGTTCT 57.438 30.769 0.00 0.00 0.00 3.01
2077 2259 9.647797 TCGTGATGACACTAAATACTACAATTT 57.352 29.630 0.00 0.00 43.99 1.82
2078 2260 9.817809 ATCGTGATGACACTAAATACTACAATT 57.182 29.630 0.00 0.00 43.99 2.32
2084 2266 8.638873 TGGAATATCGTGATGACACTAAATACT 58.361 33.333 0.00 0.00 43.99 2.12
2085 2267 8.812147 TGGAATATCGTGATGACACTAAATAC 57.188 34.615 0.00 0.00 43.99 1.89
2086 2268 8.088365 CCTGGAATATCGTGATGACACTAAATA 58.912 37.037 0.00 0.00 43.99 1.40
2091 2546 3.960755 TCCTGGAATATCGTGATGACACT 59.039 43.478 0.00 0.00 43.99 3.55
2093 2548 4.262592 CCATCCTGGAATATCGTGATGACA 60.263 45.833 0.00 0.00 40.96 3.58
2094 2549 4.021104 TCCATCCTGGAATATCGTGATGAC 60.021 45.833 0.00 0.00 45.00 3.06
2095 2550 4.159557 TCCATCCTGGAATATCGTGATGA 58.840 43.478 0.00 0.00 45.00 2.92
2096 2551 4.541973 TCCATCCTGGAATATCGTGATG 57.458 45.455 0.00 0.00 45.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.