Multiple sequence alignment - TraesCS7D01G545900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G545900 chr7D 100.000 4524 0 0 1 4524 632856507 632861030 0.000000e+00 8355.0
1 TraesCS7D01G545900 chr7D 93.966 116 3 3 4372 4484 633154828 633154942 6.020000e-39 172.0
2 TraesCS7D01G545900 chr7D 96.629 89 3 0 4068 4156 633154684 633154772 1.010000e-31 148.0
3 TraesCS7D01G545900 chr7A 94.746 3274 127 11 586 3827 734689074 734685814 0.000000e+00 5051.0
4 TraesCS7D01G545900 chr7A 95.584 317 14 0 436 752 734696808 734696492 4.040000e-140 508.0
5 TraesCS7D01G545900 chr7A 92.553 94 6 1 4211 4303 223679803 223679710 2.840000e-27 134.0
6 TraesCS7D01G545900 chr7A 95.918 49 1 1 1756 1803 51795044 51795092 1.350000e-10 78.7
7 TraesCS7D01G545900 chr7A 95.918 49 1 1 1756 1803 51840053 51840101 1.350000e-10 78.7
8 TraesCS7D01G545900 chr7A 95.918 49 1 1 1756 1803 51881092 51881140 1.350000e-10 78.7
9 TraesCS7D01G545900 chr7A 93.878 49 2 1 1756 1803 51813931 51813979 6.280000e-09 73.1
10 TraesCS7D01G545900 chr2D 95.250 2021 87 3 2504 4524 2047959 2049970 0.000000e+00 3192.0
11 TraesCS7D01G545900 chr2D 92.534 442 21 5 1 432 562806614 562807053 1.380000e-174 623.0
12 TraesCS7D01G545900 chr2D 91.982 449 24 4 1 437 600413676 600413228 1.790000e-173 619.0
13 TraesCS7D01G545900 chr2D 82.821 390 43 11 858 1225 2045419 2045806 1.210000e-85 327.0
14 TraesCS7D01G545900 chr2D 88.571 105 11 1 4209 4312 121720740 121720636 4.750000e-25 126.0
15 TraesCS7D01G545900 chr2D 83.810 105 16 1 1699 1803 44465932 44465829 1.040000e-16 99.0
16 TraesCS7D01G545900 chr7B 90.793 706 51 4 2504 3206 746697145 746697839 0.000000e+00 931.0
17 TraesCS7D01G545900 chr7B 94.635 466 24 1 3200 3664 746699455 746699920 0.000000e+00 721.0
18 TraesCS7D01G545900 chr7B 79.823 451 51 21 1870 2314 746696496 746696912 4.430000e-75 292.0
19 TraesCS7D01G545900 chr7B 85.259 251 23 5 3958 4208 746300902 746301138 3.500000e-61 246.0
20 TraesCS7D01G545900 chr7B 93.798 129 4 3 4304 4430 745106722 745106848 1.660000e-44 191.0
21 TraesCS7D01G545900 chr7B 82.895 228 22 7 3964 4188 745106513 745106726 5.970000e-44 189.0
22 TraesCS7D01G545900 chr7B 93.651 126 7 1 3921 4046 746700117 746700241 2.150000e-43 187.0
23 TraesCS7D01G545900 chr7B 82.222 225 31 7 4000 4219 596404893 596405113 7.730000e-43 185.0
24 TraesCS7D01G545900 chr7B 84.146 164 11 8 4350 4513 531003320 531003172 1.310000e-30 145.0
25 TraesCS7D01G545900 chr7B 88.421 95 11 0 1709 1803 667384462 667384368 1.030000e-21 115.0
26 TraesCS7D01G545900 chr7B 93.333 75 5 0 4068 4142 747306555 747306629 1.330000e-20 111.0
27 TraesCS7D01G545900 chr7B 100.000 47 0 0 4017 4063 749138359 749138405 2.240000e-13 87.9
28 TraesCS7D01G545900 chr7B 85.714 84 8 2 4125 4208 531003417 531003338 8.060000e-13 86.1
29 TraesCS7D01G545900 chr7B 97.872 47 1 0 4017 4063 746979103 746979057 1.040000e-11 82.4
30 TraesCS7D01G545900 chr3B 82.341 1025 161 12 2535 3543 818443035 818444055 0.000000e+00 872.0
31 TraesCS7D01G545900 chr1D 92.617 447 23 6 1 437 373099938 373099492 6.380000e-178 634.0
32 TraesCS7D01G545900 chr5A 92.634 448 20 4 1 437 617202367 617201922 2.300000e-177 632.0
33 TraesCS7D01G545900 chr5A 91.593 452 24 10 1 440 344408156 344408605 2.990000e-171 612.0
34 TraesCS7D01G545900 chr5A 100.000 28 0 0 1711 1738 29261584 29261557 8.000000e-03 52.8
35 TraesCS7D01G545900 chr3A 92.601 446 21 6 2 436 429680401 429680845 8.260000e-177 630.0
36 TraesCS7D01G545900 chr3D 92.053 453 23 6 1 441 582841151 582841602 3.840000e-175 625.0
37 TraesCS7D01G545900 chr3D 92.342 444 24 5 1 434 569475210 569474767 1.380000e-174 623.0
38 TraesCS7D01G545900 chr3D 91.759 449 25 8 1 437 577290695 577290247 8.320000e-172 614.0
39 TraesCS7D01G545900 chr3D 83.409 440 67 6 2535 2971 611113608 611114044 1.960000e-108 403.0
40 TraesCS7D01G545900 chrUn 79.753 810 162 2 2714 3522 79679516 79678708 1.810000e-163 586.0
41 TraesCS7D01G545900 chrUn 77.333 975 202 17 2536 3502 346081680 346080717 3.950000e-155 558.0
42 TraesCS7D01G545900 chr6D 77.333 975 205 15 2536 3502 468168731 468167765 3.060000e-156 562.0
43 TraesCS7D01G545900 chr6D 85.417 96 11 3 1709 1803 467161084 467161177 3.730000e-16 97.1
44 TraesCS7D01G545900 chr6B 77.152 976 206 15 2536 3502 714340692 714339725 6.610000e-153 551.0
45 TraesCS7D01G545900 chr4D 78.571 854 169 12 2650 3496 1618244 1617398 6.610000e-153 551.0
46 TraesCS7D01G545900 chr2A 89.565 115 11 1 1689 1803 736872 736985 1.310000e-30 145.0
47 TraesCS7D01G545900 chr2A 94.382 89 5 0 4215 4303 18339608 18339520 2.190000e-28 137.0
48 TraesCS7D01G545900 chr5D 94.382 89 5 0 4215 4303 373835033 373834945 2.190000e-28 137.0
49 TraesCS7D01G545900 chr2B 93.478 92 5 1 4213 4303 40438049 40437958 7.890000e-28 135.0
50 TraesCS7D01G545900 chr2B 91.000 100 8 1 4205 4304 506102690 506102592 2.840000e-27 134.0
51 TraesCS7D01G545900 chr2B 100.000 28 0 0 1711 1738 101326136 101326163 8.000000e-03 52.8
52 TraesCS7D01G545900 chr1B 91.837 98 6 1 4217 4312 61251251 61251348 7.890000e-28 135.0
53 TraesCS7D01G545900 chr4A 91.579 95 8 0 4209 4303 27667602 27667508 1.020000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G545900 chr7D 632856507 632861030 4523 False 8355.00 8355 100.0000 1 4524 1 chr7D.!!$F1 4523
1 TraesCS7D01G545900 chr7A 734685814 734689074 3260 True 5051.00 5051 94.7460 586 3827 1 chr7A.!!$R2 3241
2 TraesCS7D01G545900 chr2D 2045419 2049970 4551 False 1759.50 3192 89.0355 858 4524 2 chr2D.!!$F2 3666
3 TraesCS7D01G545900 chr7B 746696496 746700241 3745 False 532.75 931 89.7255 1870 4046 4 chr7B.!!$F6 2176
4 TraesCS7D01G545900 chr3B 818443035 818444055 1020 False 872.00 872 82.3410 2535 3543 1 chr3B.!!$F1 1008
5 TraesCS7D01G545900 chrUn 79678708 79679516 808 True 586.00 586 79.7530 2714 3522 1 chrUn.!!$R1 808
6 TraesCS7D01G545900 chrUn 346080717 346081680 963 True 558.00 558 77.3330 2536 3502 1 chrUn.!!$R2 966
7 TraesCS7D01G545900 chr6D 468167765 468168731 966 True 562.00 562 77.3330 2536 3502 1 chr6D.!!$R1 966
8 TraesCS7D01G545900 chr6B 714339725 714340692 967 True 551.00 551 77.1520 2536 3502 1 chr6B.!!$R1 966
9 TraesCS7D01G545900 chr4D 1617398 1618244 846 True 551.00 551 78.5710 2650 3496 1 chr4D.!!$R1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.034767 CAGCACATGGGTGGACTGAT 60.035 55.0 0.00 0.0 45.38 2.90 F
482 483 0.034767 AGCACATGGGTGGACTGATG 60.035 55.0 0.00 0.0 45.38 3.07 F
575 576 0.109412 CCCACACTCGTTCTACCGTC 60.109 60.0 0.00 0.0 0.00 4.79 F
577 578 0.236711 CACACTCGTTCTACCGTCGT 59.763 55.0 0.00 0.0 0.00 4.34 F
578 579 0.514691 ACACTCGTTCTACCGTCGTC 59.485 55.0 0.00 0.0 0.00 4.20 F
977 1007 0.519077 GTTTGGTGTGCAGCTAGCTC 59.481 55.0 16.15 10.6 45.94 4.09 F
1623 1667 0.603569 AAGCAGTCGTGACCTTCGAT 59.396 50.0 0.00 0.0 39.45 3.59 F
2000 2047 1.588674 GTCAACCATTCGTGTCCACA 58.411 50.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 1658 0.109272 TGACAGCGTCATCGAAGGTC 60.109 55.000 7.20 0.0 37.67 3.85 R
1623 1667 0.250124 ATTTCCCGTTGACAGCGTCA 60.250 50.000 10.87 7.2 41.09 4.35 R
2314 2367 1.240256 GTGTTGTGGCATTTCCCGTA 58.760 50.000 0.00 0.0 0.00 4.02 R
2393 2446 2.430493 GGAAACATTTCCGCGCAAC 58.570 52.632 8.75 0.0 46.36 4.17 R
2483 2547 4.751060 TGGCAATCGAAAATAGTACTCGT 58.249 39.130 0.00 0.0 34.27 4.18 R
2771 3898 4.714632 ACAGGCTTCTTTACTGCAACTAA 58.285 39.130 0.00 0.0 35.70 2.24 R
3007 4146 1.451028 GCCTTCCGCTGATTCTGCT 60.451 57.895 12.85 0.0 0.00 4.24 R
3703 6466 0.400213 AAAGCCACAATGGTCCGAGA 59.600 50.000 0.00 0.0 40.46 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.736447 CACACTTTCAACTTTAGGAAGATCT 57.264 36.000 0.00 0.00 36.69 2.75
25 26 8.159344 CACACTTTCAACTTTAGGAAGATCTT 57.841 34.615 7.95 7.95 36.69 2.40
26 27 9.273016 CACACTTTCAACTTTAGGAAGATCTTA 57.727 33.333 8.25 0.00 36.69 2.10
32 33 8.723942 TCAACTTTAGGAAGATCTTATTGAGC 57.276 34.615 8.25 0.00 36.69 4.26
33 34 8.321353 TCAACTTTAGGAAGATCTTATTGAGCA 58.679 33.333 8.25 0.00 36.69 4.26
34 35 8.394121 CAACTTTAGGAAGATCTTATTGAGCAC 58.606 37.037 8.25 0.00 36.69 4.40
35 36 7.051000 ACTTTAGGAAGATCTTATTGAGCACC 58.949 38.462 8.25 2.64 36.69 5.01
36 37 6.560003 TTAGGAAGATCTTATTGAGCACCA 57.440 37.500 8.25 0.00 34.24 4.17
37 38 5.643421 AGGAAGATCTTATTGAGCACCAT 57.357 39.130 8.25 0.00 34.24 3.55
38 39 6.011122 AGGAAGATCTTATTGAGCACCATT 57.989 37.500 8.25 0.00 34.24 3.16
39 40 5.826737 AGGAAGATCTTATTGAGCACCATTG 59.173 40.000 8.25 0.00 34.24 2.82
40 41 5.009410 GGAAGATCTTATTGAGCACCATTGG 59.991 44.000 8.25 0.00 32.67 3.16
41 42 3.887716 AGATCTTATTGAGCACCATTGGC 59.112 43.478 1.54 0.00 32.67 4.52
42 43 3.084536 TCTTATTGAGCACCATTGGCA 57.915 42.857 1.54 0.00 0.00 4.92
43 44 3.429492 TCTTATTGAGCACCATTGGCAA 58.571 40.909 0.68 0.68 0.00 4.52
44 45 3.831333 TCTTATTGAGCACCATTGGCAAA 59.169 39.130 3.01 0.00 0.00 3.68
45 46 2.754946 ATTGAGCACCATTGGCAAAG 57.245 45.000 3.01 0.00 0.00 2.77
46 47 0.680618 TTGAGCACCATTGGCAAAGG 59.319 50.000 19.29 19.29 0.00 3.11
47 48 1.186917 TGAGCACCATTGGCAAAGGG 61.187 55.000 23.91 20.24 43.11 3.95
48 49 2.046988 GCACCATTGGCAAAGGGC 60.047 61.111 23.91 19.33 41.08 5.19
49 50 2.586293 GCACCATTGGCAAAGGGCT 61.586 57.895 23.91 2.66 41.08 5.19
50 51 1.294138 CACCATTGGCAAAGGGCTG 59.706 57.895 23.91 11.41 41.08 4.85
51 52 1.155859 ACCATTGGCAAAGGGCTGA 59.844 52.632 23.91 0.00 41.08 4.26
52 53 0.471591 ACCATTGGCAAAGGGCTGAA 60.472 50.000 23.91 0.00 41.08 3.02
53 54 0.037046 CCATTGGCAAAGGGCTGAAC 60.037 55.000 13.59 0.00 44.01 3.18
54 55 0.680618 CATTGGCAAAGGGCTGAACA 59.319 50.000 3.01 0.00 44.01 3.18
55 56 1.070445 CATTGGCAAAGGGCTGAACAA 59.930 47.619 3.01 0.00 44.01 2.83
56 57 1.422531 TTGGCAAAGGGCTGAACAAT 58.577 45.000 0.00 0.00 44.01 2.71
57 58 0.680618 TGGCAAAGGGCTGAACAATG 59.319 50.000 0.00 0.00 44.01 2.82
58 59 0.968405 GGCAAAGGGCTGAACAATGA 59.032 50.000 0.00 0.00 44.01 2.57
59 60 1.337167 GGCAAAGGGCTGAACAATGAC 60.337 52.381 0.00 0.00 44.01 3.06
60 61 1.615392 GCAAAGGGCTGAACAATGACT 59.385 47.619 0.00 0.00 40.25 3.41
61 62 2.819608 GCAAAGGGCTGAACAATGACTA 59.180 45.455 0.00 0.00 40.25 2.59
62 63 3.255642 GCAAAGGGCTGAACAATGACTAA 59.744 43.478 0.00 0.00 40.25 2.24
63 64 4.082026 GCAAAGGGCTGAACAATGACTAAT 60.082 41.667 0.00 0.00 40.25 1.73
64 65 5.567423 GCAAAGGGCTGAACAATGACTAATT 60.567 40.000 0.00 0.00 40.25 1.40
65 66 6.458210 CAAAGGGCTGAACAATGACTAATTT 58.542 36.000 0.00 0.00 0.00 1.82
66 67 6.670695 AAGGGCTGAACAATGACTAATTTT 57.329 33.333 0.00 0.00 0.00 1.82
67 68 6.670695 AGGGCTGAACAATGACTAATTTTT 57.329 33.333 0.00 0.00 0.00 1.94
68 69 6.458210 AGGGCTGAACAATGACTAATTTTTG 58.542 36.000 0.00 0.00 0.00 2.44
69 70 6.041979 AGGGCTGAACAATGACTAATTTTTGT 59.958 34.615 0.00 0.00 33.93 2.83
70 71 7.232534 AGGGCTGAACAATGACTAATTTTTGTA 59.767 33.333 0.00 0.00 32.31 2.41
71 72 8.034804 GGGCTGAACAATGACTAATTTTTGTAT 58.965 33.333 0.00 0.00 32.31 2.29
72 73 9.423061 GGCTGAACAATGACTAATTTTTGTATT 57.577 29.630 0.00 0.00 32.31 1.89
108 109 8.741101 TGTATTCATGACAAGTTTTGTATTGC 57.259 30.769 0.00 0.00 45.52 3.56
109 110 8.355913 TGTATTCATGACAAGTTTTGTATTGCA 58.644 29.630 0.00 0.00 45.52 4.08
110 111 9.357652 GTATTCATGACAAGTTTTGTATTGCAT 57.642 29.630 0.00 0.00 45.52 3.96
111 112 8.836268 ATTCATGACAAGTTTTGTATTGCATT 57.164 26.923 0.00 0.00 45.52 3.56
112 113 9.926158 ATTCATGACAAGTTTTGTATTGCATTA 57.074 25.926 0.00 0.00 45.52 1.90
113 114 9.926158 TTCATGACAAGTTTTGTATTGCATTAT 57.074 25.926 0.00 0.00 45.52 1.28
114 115 9.926158 TCATGACAAGTTTTGTATTGCATTATT 57.074 25.926 0.00 0.00 45.52 1.40
130 131 8.700722 TTGCATTATTTAAGTTTGCTATGGTG 57.299 30.769 0.00 0.00 34.47 4.17
131 132 8.060931 TGCATTATTTAAGTTTGCTATGGTGA 57.939 30.769 6.98 0.00 34.47 4.02
132 133 8.694540 TGCATTATTTAAGTTTGCTATGGTGAT 58.305 29.630 6.98 0.00 34.47 3.06
133 134 9.533253 GCATTATTTAAGTTTGCTATGGTGATT 57.467 29.630 0.00 0.00 0.00 2.57
169 170 8.994429 TTTGTAATGCGGATGATTATTGTTTT 57.006 26.923 0.00 0.00 0.00 2.43
172 173 9.676195 TGTAATGCGGATGATTATTGTTTTATG 57.324 29.630 0.00 0.00 0.00 1.90
173 174 9.677567 GTAATGCGGATGATTATTGTTTTATGT 57.322 29.630 0.00 0.00 0.00 2.29
175 176 9.598517 AATGCGGATGATTATTGTTTTATGTTT 57.401 25.926 0.00 0.00 0.00 2.83
209 210 9.743057 ATAATTCAGTTTGTTTTCGATTGTTGA 57.257 25.926 0.00 0.00 0.00 3.18
210 211 8.472683 AATTCAGTTTGTTTTCGATTGTTGAA 57.527 26.923 0.00 0.00 0.00 2.69
211 212 8.647143 ATTCAGTTTGTTTTCGATTGTTGAAT 57.353 26.923 0.00 0.00 0.00 2.57
212 213 8.472683 TTCAGTTTGTTTTCGATTGTTGAATT 57.527 26.923 0.00 0.00 0.00 2.17
213 214 9.574458 TTCAGTTTGTTTTCGATTGTTGAATTA 57.426 25.926 0.00 0.00 0.00 1.40
214 215 9.743057 TCAGTTTGTTTTCGATTGTTGAATTAT 57.257 25.926 0.00 0.00 0.00 1.28
215 216 9.782028 CAGTTTGTTTTCGATTGTTGAATTATG 57.218 29.630 0.00 0.00 0.00 1.90
216 217 9.528018 AGTTTGTTTTCGATTGTTGAATTATGT 57.472 25.926 0.00 0.00 0.00 2.29
219 220 8.291888 TGTTTTCGATTGTTGAATTATGTTGG 57.708 30.769 0.00 0.00 0.00 3.77
220 221 8.138074 TGTTTTCGATTGTTGAATTATGTTGGA 58.862 29.630 0.00 0.00 0.00 3.53
221 222 9.139174 GTTTTCGATTGTTGAATTATGTTGGAT 57.861 29.630 0.00 0.00 0.00 3.41
222 223 9.703892 TTTTCGATTGTTGAATTATGTTGGATT 57.296 25.926 0.00 0.00 0.00 3.01
223 224 9.703892 TTTCGATTGTTGAATTATGTTGGATTT 57.296 25.926 0.00 0.00 0.00 2.17
224 225 8.686397 TCGATTGTTGAATTATGTTGGATTTG 57.314 30.769 0.00 0.00 0.00 2.32
225 226 8.518702 TCGATTGTTGAATTATGTTGGATTTGA 58.481 29.630 0.00 0.00 0.00 2.69
226 227 9.304731 CGATTGTTGAATTATGTTGGATTTGAT 57.695 29.630 0.00 0.00 0.00 2.57
233 234 9.247126 TGAATTATGTTGGATTTGATATTTGCG 57.753 29.630 0.00 0.00 0.00 4.85
234 235 8.592105 AATTATGTTGGATTTGATATTTGCGG 57.408 30.769 0.00 0.00 0.00 5.69
235 236 4.383850 TGTTGGATTTGATATTTGCGGG 57.616 40.909 0.00 0.00 0.00 6.13
236 237 3.123050 GTTGGATTTGATATTTGCGGGC 58.877 45.455 0.00 0.00 0.00 6.13
237 238 2.665165 TGGATTTGATATTTGCGGGCT 58.335 42.857 0.00 0.00 0.00 5.19
238 239 2.361757 TGGATTTGATATTTGCGGGCTG 59.638 45.455 0.00 0.00 0.00 4.85
239 240 2.622942 GGATTTGATATTTGCGGGCTGA 59.377 45.455 0.00 0.00 0.00 4.26
240 241 3.256631 GGATTTGATATTTGCGGGCTGAT 59.743 43.478 0.00 0.00 0.00 2.90
241 242 3.713858 TTTGATATTTGCGGGCTGATG 57.286 42.857 0.00 0.00 0.00 3.07
242 243 2.636647 TGATATTTGCGGGCTGATGA 57.363 45.000 0.00 0.00 0.00 2.92
243 244 3.144657 TGATATTTGCGGGCTGATGAT 57.855 42.857 0.00 0.00 0.00 2.45
244 245 4.284829 TGATATTTGCGGGCTGATGATA 57.715 40.909 0.00 0.00 0.00 2.15
245 246 4.847198 TGATATTTGCGGGCTGATGATAT 58.153 39.130 0.00 0.00 0.00 1.63
246 247 4.637091 TGATATTTGCGGGCTGATGATATG 59.363 41.667 0.00 0.00 0.00 1.78
247 248 0.953727 TTTGCGGGCTGATGATATGC 59.046 50.000 0.00 0.00 0.00 3.14
248 249 1.229975 TTGCGGGCTGATGATATGCG 61.230 55.000 0.00 0.00 0.00 4.73
249 250 2.393768 GCGGGCTGATGATATGCGG 61.394 63.158 0.00 0.00 0.00 5.69
250 251 1.742880 CGGGCTGATGATATGCGGG 60.743 63.158 0.00 0.00 0.00 6.13
251 252 1.679311 GGGCTGATGATATGCGGGA 59.321 57.895 0.00 0.00 0.00 5.14
252 253 0.254178 GGGCTGATGATATGCGGGAT 59.746 55.000 0.00 0.00 0.00 3.85
253 254 1.376543 GGCTGATGATATGCGGGATG 58.623 55.000 0.00 0.00 0.00 3.51
254 255 0.731417 GCTGATGATATGCGGGATGC 59.269 55.000 0.00 0.00 46.70 3.91
266 267 4.842091 GGATGCAGCGGCGCAAAG 62.842 66.667 35.02 23.23 46.87 2.77
267 268 3.803082 GATGCAGCGGCGCAAAGA 61.803 61.111 35.02 14.97 46.87 2.52
268 269 3.729906 GATGCAGCGGCGCAAAGAG 62.730 63.158 35.02 18.10 46.87 2.85
271 272 4.456253 CAGCGGCGCAAAGAGCAG 62.456 66.667 35.02 8.79 46.13 4.24
272 273 4.687215 AGCGGCGCAAAGAGCAGA 62.687 61.111 35.02 0.00 46.13 4.26
273 274 3.726517 GCGGCGCAAAGAGCAGAA 61.727 61.111 29.21 0.00 46.13 3.02
274 275 2.174349 CGGCGCAAAGAGCAGAAC 59.826 61.111 10.83 0.00 46.13 3.01
275 276 2.563427 GGCGCAAAGAGCAGAACC 59.437 61.111 10.83 0.00 46.13 3.62
276 277 2.563427 GCGCAAAGAGCAGAACCC 59.437 61.111 0.30 0.00 46.13 4.11
277 278 2.863153 CGCAAAGAGCAGAACCCG 59.137 61.111 0.00 0.00 46.13 5.28
278 279 2.563427 GCAAAGAGCAGAACCCGC 59.437 61.111 0.00 0.00 44.79 6.13
279 280 2.260869 GCAAAGAGCAGAACCCGCA 61.261 57.895 0.00 0.00 44.79 5.69
280 281 1.589716 GCAAAGAGCAGAACCCGCAT 61.590 55.000 0.00 0.00 44.79 4.73
281 282 1.737838 CAAAGAGCAGAACCCGCATA 58.262 50.000 0.00 0.00 0.00 3.14
282 283 1.667724 CAAAGAGCAGAACCCGCATAG 59.332 52.381 0.00 0.00 0.00 2.23
283 284 0.462759 AAGAGCAGAACCCGCATAGC 60.463 55.000 0.00 0.00 0.00 2.97
284 285 1.889573 GAGCAGAACCCGCATAGCC 60.890 63.158 0.00 0.00 0.00 3.93
285 286 3.272334 GCAGAACCCGCATAGCCG 61.272 66.667 0.00 0.00 0.00 5.52
286 287 2.499205 CAGAACCCGCATAGCCGA 59.501 61.111 0.00 0.00 0.00 5.54
287 288 1.883084 CAGAACCCGCATAGCCGAC 60.883 63.158 0.00 0.00 0.00 4.79
288 289 2.588034 GAACCCGCATAGCCGACC 60.588 66.667 0.00 0.00 0.00 4.79
289 290 4.171103 AACCCGCATAGCCGACCC 62.171 66.667 0.00 0.00 0.00 4.46
292 293 3.598715 CCGCATAGCCGACCCGTA 61.599 66.667 0.00 0.00 0.00 4.02
293 294 2.414179 CGCATAGCCGACCCGTAA 59.586 61.111 0.00 0.00 0.00 3.18
294 295 1.227031 CGCATAGCCGACCCGTAAA 60.227 57.895 0.00 0.00 0.00 2.01
295 296 0.806884 CGCATAGCCGACCCGTAAAA 60.807 55.000 0.00 0.00 0.00 1.52
296 297 1.371595 GCATAGCCGACCCGTAAAAA 58.628 50.000 0.00 0.00 0.00 1.94
297 298 1.944709 GCATAGCCGACCCGTAAAAAT 59.055 47.619 0.00 0.00 0.00 1.82
298 299 2.286772 GCATAGCCGACCCGTAAAAATG 60.287 50.000 0.00 0.00 0.00 2.32
299 300 1.371595 TAGCCGACCCGTAAAAATGC 58.628 50.000 0.00 0.00 0.00 3.56
300 301 0.606944 AGCCGACCCGTAAAAATGCA 60.607 50.000 0.00 0.00 0.00 3.96
301 302 0.454196 GCCGACCCGTAAAAATGCAT 59.546 50.000 0.00 0.00 0.00 3.96
302 303 1.671845 GCCGACCCGTAAAAATGCATA 59.328 47.619 0.00 0.00 0.00 3.14
303 304 2.292292 GCCGACCCGTAAAAATGCATAT 59.708 45.455 0.00 0.00 0.00 1.78
304 305 3.243267 GCCGACCCGTAAAAATGCATATT 60.243 43.478 0.00 0.79 0.00 1.28
305 306 4.533222 CCGACCCGTAAAAATGCATATTC 58.467 43.478 0.00 0.00 0.00 1.75
306 307 4.533222 CGACCCGTAAAAATGCATATTCC 58.467 43.478 0.00 0.00 0.00 3.01
307 308 4.533222 GACCCGTAAAAATGCATATTCCG 58.467 43.478 0.00 1.27 0.00 4.30
308 309 3.243267 ACCCGTAAAAATGCATATTCCGC 60.243 43.478 0.00 0.00 0.00 5.54
309 310 2.970609 CCGTAAAAATGCATATTCCGCG 59.029 45.455 0.00 0.00 0.00 6.46
310 311 3.303461 CCGTAAAAATGCATATTCCGCGA 60.303 43.478 8.23 0.00 0.00 5.87
311 312 4.275662 CGTAAAAATGCATATTCCGCGAA 58.724 39.130 8.23 0.00 0.00 4.70
312 313 4.909305 CGTAAAAATGCATATTCCGCGAAT 59.091 37.500 8.23 8.38 36.20 3.34
313 314 6.074642 CGTAAAAATGCATATTCCGCGAATA 58.925 36.000 8.23 10.48 38.61 1.75
314 315 6.740905 CGTAAAAATGCATATTCCGCGAATAT 59.259 34.615 8.23 12.37 43.42 1.28
315 316 7.900864 CGTAAAAATGCATATTCCGCGAATATA 59.099 33.333 8.23 2.16 41.52 0.86
316 317 8.995906 GTAAAAATGCATATTCCGCGAATATAC 58.004 33.333 8.23 10.52 41.52 1.47
317 318 6.985188 AAATGCATATTCCGCGAATATACT 57.015 33.333 8.23 1.61 41.52 2.12
318 319 6.985188 AATGCATATTCCGCGAATATACTT 57.015 33.333 8.23 5.99 41.52 2.24
319 320 6.985188 ATGCATATTCCGCGAATATACTTT 57.015 33.333 8.23 0.92 41.52 2.66
320 321 6.795098 TGCATATTCCGCGAATATACTTTT 57.205 33.333 8.23 0.00 41.52 2.27
321 322 7.197071 TGCATATTCCGCGAATATACTTTTT 57.803 32.000 8.23 0.00 41.52 1.94
346 347 3.060828 TCCGTTTAGGAGGTCTGCA 57.939 52.632 0.00 0.00 45.98 4.41
347 348 1.568504 TCCGTTTAGGAGGTCTGCAT 58.431 50.000 0.00 0.00 45.98 3.96
348 349 1.480954 TCCGTTTAGGAGGTCTGCATC 59.519 52.381 0.00 0.00 45.98 3.91
349 350 1.560923 CGTTTAGGAGGTCTGCATCG 58.439 55.000 0.00 0.00 0.00 3.84
350 351 1.291132 GTTTAGGAGGTCTGCATCGC 58.709 55.000 0.00 0.00 0.00 4.58
351 352 0.178068 TTTAGGAGGTCTGCATCGCC 59.822 55.000 0.00 0.00 0.00 5.54
352 353 1.686325 TTAGGAGGTCTGCATCGCCC 61.686 60.000 0.00 0.00 0.00 6.13
353 354 4.899239 GGAGGTCTGCATCGCCCG 62.899 72.222 0.00 0.00 0.00 6.13
374 375 3.977244 CGGCCCGCAAAAGCTGTT 61.977 61.111 0.00 0.00 0.00 3.16
375 376 2.421314 GGCCCGCAAAAGCTGTTT 59.579 55.556 0.00 0.00 0.00 2.83
376 377 1.227527 GGCCCGCAAAAGCTGTTTT 60.228 52.632 0.00 0.00 36.22 2.43
382 383 2.576083 CAAAAGCTGTTTTGCGCGA 58.424 47.368 12.10 0.00 44.56 5.87
383 384 0.919981 CAAAAGCTGTTTTGCGCGAA 59.080 45.000 12.10 5.81 44.56 4.70
384 385 0.920664 AAAAGCTGTTTTGCGCGAAC 59.079 45.000 12.10 14.23 34.44 3.95
385 386 0.100503 AAAGCTGTTTTGCGCGAACT 59.899 45.000 21.89 9.60 38.13 3.01
386 387 0.592247 AAGCTGTTTTGCGCGAACTG 60.592 50.000 21.89 21.45 38.13 3.16
387 388 2.639000 GCTGTTTTGCGCGAACTGC 61.639 57.895 28.50 28.50 42.09 4.40
388 389 1.298264 CTGTTTTGCGCGAACTGCA 60.298 52.632 21.89 14.94 46.97 4.41
393 394 3.265636 TGCGCGAACTGCAAACGA 61.266 55.556 12.10 0.00 46.97 3.85
394 395 2.497628 GCGCGAACTGCAAACGAG 60.498 61.111 12.10 8.20 46.97 4.18
395 396 2.928361 CGCGAACTGCAAACGAGT 59.072 55.556 0.00 0.00 46.97 4.18
396 397 1.275657 CGCGAACTGCAAACGAGTT 59.724 52.632 0.00 0.00 46.97 3.01
397 398 0.315869 CGCGAACTGCAAACGAGTTT 60.316 50.000 0.00 0.00 46.97 2.66
398 399 1.822581 GCGAACTGCAAACGAGTTTT 58.177 45.000 10.24 0.00 45.45 2.43
399 400 1.512771 GCGAACTGCAAACGAGTTTTG 59.487 47.619 10.24 0.00 46.57 2.44
400 401 2.780993 CGAACTGCAAACGAGTTTTGT 58.219 42.857 0.00 0.00 45.70 2.83
401 402 2.525891 CGAACTGCAAACGAGTTTTGTG 59.474 45.455 0.00 0.00 45.70 3.33
402 403 3.726486 CGAACTGCAAACGAGTTTTGTGA 60.726 43.478 0.00 0.00 45.70 3.58
403 404 3.405170 ACTGCAAACGAGTTTTGTGAG 57.595 42.857 0.00 0.00 45.70 3.51
404 405 2.111756 CTGCAAACGAGTTTTGTGAGC 58.888 47.619 0.00 0.39 45.70 4.26
405 406 1.202245 TGCAAACGAGTTTTGTGAGCC 60.202 47.619 0.00 0.00 45.70 4.70
406 407 1.741993 CAAACGAGTTTTGTGAGCCG 58.258 50.000 0.00 0.00 39.96 5.52
407 408 0.661020 AAACGAGTTTTGTGAGCCGG 59.339 50.000 0.00 0.00 0.00 6.13
408 409 1.782028 AACGAGTTTTGTGAGCCGGC 61.782 55.000 21.89 21.89 0.00 6.13
409 410 2.556287 GAGTTTTGTGAGCCGGCG 59.444 61.111 23.20 0.00 0.00 6.46
410 411 2.966309 GAGTTTTGTGAGCCGGCGG 61.966 63.158 24.35 24.35 0.00 6.13
411 412 4.038080 GTTTTGTGAGCCGGCGGG 62.038 66.667 29.48 9.71 0.00 6.13
412 413 4.257654 TTTTGTGAGCCGGCGGGA 62.258 61.111 29.48 5.79 34.06 5.14
413 414 3.561120 TTTTGTGAGCCGGCGGGAT 62.561 57.895 29.48 7.90 34.06 3.85
414 415 4.776322 TTGTGAGCCGGCGGGATG 62.776 66.667 29.48 1.53 34.06 3.51
423 424 3.161450 GGCGGGATGGGTCTGCTA 61.161 66.667 0.00 0.00 0.00 3.49
424 425 2.423446 GCGGGATGGGTCTGCTAG 59.577 66.667 0.00 0.00 0.00 3.42
425 426 2.134287 GCGGGATGGGTCTGCTAGA 61.134 63.158 0.00 0.00 0.00 2.43
426 427 2.045280 CGGGATGGGTCTGCTAGAG 58.955 63.158 0.00 0.00 0.00 2.43
427 428 0.757188 CGGGATGGGTCTGCTAGAGT 60.757 60.000 0.00 0.00 0.00 3.24
428 429 1.501582 GGGATGGGTCTGCTAGAGTT 58.498 55.000 0.00 0.00 0.00 3.01
429 430 1.139853 GGGATGGGTCTGCTAGAGTTG 59.860 57.143 0.00 0.00 0.00 3.16
430 431 1.474143 GGATGGGTCTGCTAGAGTTGC 60.474 57.143 0.00 0.00 0.00 4.17
431 432 1.484240 GATGGGTCTGCTAGAGTTGCT 59.516 52.381 0.00 0.00 0.00 3.91
432 433 0.898320 TGGGTCTGCTAGAGTTGCTC 59.102 55.000 0.00 0.00 0.00 4.26
433 434 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
434 435 1.552792 GGGTCTGCTAGAGTTGCTCTT 59.447 52.381 3.87 0.00 41.50 2.85
435 436 2.761208 GGGTCTGCTAGAGTTGCTCTTA 59.239 50.000 3.87 0.00 41.50 2.10
436 437 3.181480 GGGTCTGCTAGAGTTGCTCTTAG 60.181 52.174 3.87 2.21 41.50 2.18
437 438 3.445805 GGTCTGCTAGAGTTGCTCTTAGT 59.554 47.826 3.87 0.00 41.50 2.24
438 439 4.641094 GGTCTGCTAGAGTTGCTCTTAGTA 59.359 45.833 3.87 0.34 41.50 1.82
439 440 5.220970 GGTCTGCTAGAGTTGCTCTTAGTAG 60.221 48.000 3.87 8.46 41.50 2.57
440 441 5.355910 GTCTGCTAGAGTTGCTCTTAGTAGT 59.644 44.000 3.87 0.00 41.50 2.73
441 442 5.587043 TCTGCTAGAGTTGCTCTTAGTAGTC 59.413 44.000 3.87 0.00 41.50 2.59
442 443 4.641094 TGCTAGAGTTGCTCTTAGTAGTCC 59.359 45.833 3.87 0.00 41.50 3.85
443 444 4.885325 GCTAGAGTTGCTCTTAGTAGTCCT 59.115 45.833 3.87 0.00 41.50 3.85
444 445 5.358725 GCTAGAGTTGCTCTTAGTAGTCCTT 59.641 44.000 3.87 0.00 41.50 3.36
445 446 5.907866 AGAGTTGCTCTTAGTAGTCCTTC 57.092 43.478 0.00 0.00 37.60 3.46
446 447 5.326069 AGAGTTGCTCTTAGTAGTCCTTCA 58.674 41.667 0.00 0.00 37.60 3.02
447 448 5.417580 AGAGTTGCTCTTAGTAGTCCTTCAG 59.582 44.000 0.00 0.00 37.60 3.02
448 449 5.081032 AGTTGCTCTTAGTAGTCCTTCAGT 58.919 41.667 0.00 0.00 0.00 3.41
449 450 5.047660 AGTTGCTCTTAGTAGTCCTTCAGTG 60.048 44.000 0.00 0.00 0.00 3.66
450 451 4.663334 TGCTCTTAGTAGTCCTTCAGTGA 58.337 43.478 0.00 0.00 0.00 3.41
451 452 5.077564 TGCTCTTAGTAGTCCTTCAGTGAA 58.922 41.667 5.25 5.25 0.00 3.18
452 453 5.184096 TGCTCTTAGTAGTCCTTCAGTGAAG 59.816 44.000 23.58 23.58 39.17 3.02
453 454 5.184287 GCTCTTAGTAGTCCTTCAGTGAAGT 59.816 44.000 27.07 14.31 37.92 3.01
454 455 6.576662 TCTTAGTAGTCCTTCAGTGAAGTG 57.423 41.667 27.07 19.40 37.92 3.16
455 456 5.477291 TCTTAGTAGTCCTTCAGTGAAGTGG 59.523 44.000 27.07 16.55 37.92 4.00
456 457 2.900546 AGTAGTCCTTCAGTGAAGTGGG 59.099 50.000 27.07 15.90 37.92 4.61
457 458 0.398318 AGTCCTTCAGTGAAGTGGGC 59.602 55.000 27.07 17.67 37.92 5.36
458 459 0.951040 GTCCTTCAGTGAAGTGGGCG 60.951 60.000 27.07 14.18 37.92 6.13
459 460 1.118965 TCCTTCAGTGAAGTGGGCGA 61.119 55.000 27.07 16.02 37.92 5.54
460 461 0.671781 CCTTCAGTGAAGTGGGCGAG 60.672 60.000 27.07 9.78 37.92 5.03
461 462 1.294659 CTTCAGTGAAGTGGGCGAGC 61.295 60.000 22.48 0.00 35.21 5.03
462 463 2.731691 TTCAGTGAAGTGGGCGAGCC 62.732 60.000 5.37 5.37 0.00 4.70
463 464 3.241530 AGTGAAGTGGGCGAGCCA 61.242 61.111 16.65 0.00 37.98 4.75
464 465 2.743928 GTGAAGTGGGCGAGCCAG 60.744 66.667 16.65 0.00 37.98 4.85
465 466 4.704833 TGAAGTGGGCGAGCCAGC 62.705 66.667 16.65 7.68 37.98 4.85
466 467 4.704833 GAAGTGGGCGAGCCAGCA 62.705 66.667 16.65 2.61 39.27 4.41
479 480 3.991999 CAGCACATGGGTGGACTG 58.008 61.111 0.00 0.00 45.38 3.51
480 481 1.376086 CAGCACATGGGTGGACTGA 59.624 57.895 0.00 0.00 45.38 3.41
481 482 0.034767 CAGCACATGGGTGGACTGAT 60.035 55.000 0.00 0.00 45.38 2.90
482 483 0.034767 AGCACATGGGTGGACTGATG 60.035 55.000 0.00 0.00 45.38 3.07
483 484 1.033746 GCACATGGGTGGACTGATGG 61.034 60.000 0.00 0.00 45.38 3.51
484 485 0.329261 CACATGGGTGGACTGATGGT 59.671 55.000 0.00 0.00 41.45 3.55
485 486 0.620556 ACATGGGTGGACTGATGGTC 59.379 55.000 0.00 0.00 43.79 4.02
486 487 0.914644 CATGGGTGGACTGATGGTCT 59.085 55.000 0.00 0.00 43.97 3.85
487 488 1.283029 CATGGGTGGACTGATGGTCTT 59.717 52.381 0.00 0.00 43.97 3.01
488 489 0.984230 TGGGTGGACTGATGGTCTTC 59.016 55.000 0.00 0.00 43.97 2.87
489 490 0.253327 GGGTGGACTGATGGTCTTCC 59.747 60.000 0.00 0.00 43.97 3.46
490 491 1.280457 GGTGGACTGATGGTCTTCCT 58.720 55.000 0.00 0.00 43.97 3.36
491 492 2.467880 GGTGGACTGATGGTCTTCCTA 58.532 52.381 0.00 0.00 43.97 2.94
492 493 2.838202 GGTGGACTGATGGTCTTCCTAA 59.162 50.000 0.00 0.00 43.97 2.69
493 494 3.263425 GGTGGACTGATGGTCTTCCTAAA 59.737 47.826 0.00 0.00 43.97 1.85
494 495 4.263331 GGTGGACTGATGGTCTTCCTAAAA 60.263 45.833 0.00 0.00 43.97 1.52
495 496 5.313712 GTGGACTGATGGTCTTCCTAAAAA 58.686 41.667 0.00 0.00 43.97 1.94
511 512 3.800628 AAAAAGCATTGCTCGGCTC 57.199 47.368 12.39 0.00 40.01 4.70
512 513 0.961019 AAAAAGCATTGCTCGGCTCA 59.039 45.000 12.39 0.00 40.01 4.26
513 514 0.961019 AAAAGCATTGCTCGGCTCAA 59.039 45.000 12.39 0.00 40.01 3.02
514 515 1.180029 AAAGCATTGCTCGGCTCAAT 58.820 45.000 12.39 0.00 40.01 2.57
515 516 1.180029 AAGCATTGCTCGGCTCAATT 58.820 45.000 12.39 0.00 40.01 2.32
516 517 2.042686 AGCATTGCTCGGCTCAATTA 57.957 45.000 5.03 0.00 34.76 1.40
517 518 2.579873 AGCATTGCTCGGCTCAATTAT 58.420 42.857 5.03 0.00 34.76 1.28
518 519 2.954318 AGCATTGCTCGGCTCAATTATT 59.046 40.909 5.03 0.00 34.76 1.40
519 520 3.047796 GCATTGCTCGGCTCAATTATTG 58.952 45.455 0.16 0.00 32.30 1.90
520 521 3.243168 GCATTGCTCGGCTCAATTATTGA 60.243 43.478 7.46 7.46 38.17 2.57
521 522 4.734402 GCATTGCTCGGCTCAATTATTGAA 60.734 41.667 9.05 0.00 39.58 2.69
522 523 4.621068 TTGCTCGGCTCAATTATTGAAG 57.379 40.909 9.05 4.78 39.58 3.02
523 524 3.609853 TGCTCGGCTCAATTATTGAAGT 58.390 40.909 9.05 0.00 39.58 3.01
524 525 4.765273 TGCTCGGCTCAATTATTGAAGTA 58.235 39.130 9.05 0.67 39.58 2.24
525 526 5.368145 TGCTCGGCTCAATTATTGAAGTAT 58.632 37.500 9.05 0.00 39.58 2.12
526 527 5.237127 TGCTCGGCTCAATTATTGAAGTATG 59.763 40.000 9.05 0.00 39.58 2.39
527 528 5.237344 GCTCGGCTCAATTATTGAAGTATGT 59.763 40.000 9.05 0.00 39.58 2.29
528 529 6.423905 GCTCGGCTCAATTATTGAAGTATGTA 59.576 38.462 9.05 0.00 39.58 2.29
529 530 7.359598 GCTCGGCTCAATTATTGAAGTATGTAG 60.360 40.741 9.05 2.58 39.58 2.74
530 531 7.497595 TCGGCTCAATTATTGAAGTATGTAGT 58.502 34.615 9.05 0.00 39.58 2.73
531 532 7.438160 TCGGCTCAATTATTGAAGTATGTAGTG 59.562 37.037 9.05 0.00 39.58 2.74
532 533 7.438160 CGGCTCAATTATTGAAGTATGTAGTGA 59.562 37.037 9.05 0.00 39.58 3.41
533 534 8.768955 GGCTCAATTATTGAAGTATGTAGTGAG 58.231 37.037 9.05 0.00 39.58 3.51
534 535 9.319143 GCTCAATTATTGAAGTATGTAGTGAGT 57.681 33.333 9.05 0.00 39.58 3.41
543 544 8.631480 TGAAGTATGTAGTGAGTAGTTCTTCA 57.369 34.615 0.00 0.00 36.37 3.02
544 545 9.244292 TGAAGTATGTAGTGAGTAGTTCTTCAT 57.756 33.333 0.00 0.00 34.69 2.57
545 546 9.509855 GAAGTATGTAGTGAGTAGTTCTTCATG 57.490 37.037 0.00 0.00 0.00 3.07
546 547 8.582657 AGTATGTAGTGAGTAGTTCTTCATGT 57.417 34.615 0.00 0.00 0.00 3.21
547 548 9.682465 AGTATGTAGTGAGTAGTTCTTCATGTA 57.318 33.333 0.00 0.00 0.00 2.29
548 549 9.938670 GTATGTAGTGAGTAGTTCTTCATGTAG 57.061 37.037 0.00 0.00 0.00 2.74
549 550 8.809468 ATGTAGTGAGTAGTTCTTCATGTAGA 57.191 34.615 0.00 0.00 0.00 2.59
550 551 8.809468 TGTAGTGAGTAGTTCTTCATGTAGAT 57.191 34.615 2.58 0.00 0.00 1.98
551 552 8.894731 TGTAGTGAGTAGTTCTTCATGTAGATC 58.105 37.037 2.58 2.80 0.00 2.75
552 553 7.341445 AGTGAGTAGTTCTTCATGTAGATCC 57.659 40.000 2.58 0.00 0.00 3.36
553 554 6.322712 AGTGAGTAGTTCTTCATGTAGATCCC 59.677 42.308 2.58 0.00 0.00 3.85
554 555 6.096987 GTGAGTAGTTCTTCATGTAGATCCCA 59.903 42.308 2.58 0.00 0.00 4.37
555 556 6.841229 TGAGTAGTTCTTCATGTAGATCCCAT 59.159 38.462 2.58 0.00 0.00 4.00
556 557 7.014711 TGAGTAGTTCTTCATGTAGATCCCATC 59.985 40.741 2.58 1.26 0.00 3.51
557 558 5.559148 AGTTCTTCATGTAGATCCCATCC 57.441 43.478 2.58 0.00 0.00 3.51
558 559 4.349342 AGTTCTTCATGTAGATCCCATCCC 59.651 45.833 2.58 0.00 0.00 3.85
559 560 3.940335 TCTTCATGTAGATCCCATCCCA 58.060 45.455 0.00 0.00 0.00 4.37
560 561 3.648067 TCTTCATGTAGATCCCATCCCAC 59.352 47.826 0.00 0.00 0.00 4.61
561 562 3.059051 TCATGTAGATCCCATCCCACA 57.941 47.619 0.00 0.00 31.75 4.17
562 563 2.705658 TCATGTAGATCCCATCCCACAC 59.294 50.000 0.00 0.00 30.49 3.82
563 564 2.568546 TGTAGATCCCATCCCACACT 57.431 50.000 0.00 0.00 0.00 3.55
564 565 2.398588 TGTAGATCCCATCCCACACTC 58.601 52.381 0.00 0.00 0.00 3.51
565 566 1.341531 GTAGATCCCATCCCACACTCG 59.658 57.143 0.00 0.00 0.00 4.18
566 567 0.325671 AGATCCCATCCCACACTCGT 60.326 55.000 0.00 0.00 0.00 4.18
567 568 0.541863 GATCCCATCCCACACTCGTT 59.458 55.000 0.00 0.00 0.00 3.85
568 569 0.541863 ATCCCATCCCACACTCGTTC 59.458 55.000 0.00 0.00 0.00 3.95
569 570 0.544357 TCCCATCCCACACTCGTTCT 60.544 55.000 0.00 0.00 0.00 3.01
570 571 1.191535 CCCATCCCACACTCGTTCTA 58.808 55.000 0.00 0.00 0.00 2.10
571 572 1.134788 CCCATCCCACACTCGTTCTAC 60.135 57.143 0.00 0.00 0.00 2.59
572 573 1.134788 CCATCCCACACTCGTTCTACC 60.135 57.143 0.00 0.00 0.00 3.18
573 574 0.815734 ATCCCACACTCGTTCTACCG 59.184 55.000 0.00 0.00 0.00 4.02
574 575 0.538057 TCCCACACTCGTTCTACCGT 60.538 55.000 0.00 0.00 0.00 4.83
575 576 0.109412 CCCACACTCGTTCTACCGTC 60.109 60.000 0.00 0.00 0.00 4.79
576 577 0.453950 CCACACTCGTTCTACCGTCG 60.454 60.000 0.00 0.00 0.00 5.12
577 578 0.236711 CACACTCGTTCTACCGTCGT 59.763 55.000 0.00 0.00 0.00 4.34
578 579 0.514691 ACACTCGTTCTACCGTCGTC 59.485 55.000 0.00 0.00 0.00 4.20
579 580 0.795085 CACTCGTTCTACCGTCGTCT 59.205 55.000 0.00 0.00 0.00 4.18
580 581 1.196354 CACTCGTTCTACCGTCGTCTT 59.804 52.381 0.00 0.00 0.00 3.01
581 582 1.876156 ACTCGTTCTACCGTCGTCTTT 59.124 47.619 0.00 0.00 0.00 2.52
582 583 2.096019 ACTCGTTCTACCGTCGTCTTTC 60.096 50.000 0.00 0.00 0.00 2.62
583 584 2.146342 TCGTTCTACCGTCGTCTTTCT 58.854 47.619 0.00 0.00 0.00 2.52
584 585 2.549754 TCGTTCTACCGTCGTCTTTCTT 59.450 45.455 0.00 0.00 0.00 2.52
608 609 2.695147 ACCCAGCTTGGTTCTTTTCTTG 59.305 45.455 2.99 0.00 33.91 3.02
674 684 3.003763 AGGGAGTGGCCTTCCGTC 61.004 66.667 17.31 7.59 41.87 4.79
687 698 4.280494 CCGTCGCCATCCCGGTAG 62.280 72.222 0.00 0.00 37.00 3.18
691 702 3.598715 CGCCATCCCGGTAGCGTA 61.599 66.667 13.99 1.04 43.45 4.42
711 722 0.610509 AGCCGTGAGAGAGAAGCTGA 60.611 55.000 0.00 0.00 0.00 4.26
720 731 0.687427 AGAGAAGCTGAGAGGGAGGC 60.687 60.000 0.00 0.00 0.00 4.70
736 747 4.090588 GCCGTCCGTTCCCATCCA 62.091 66.667 0.00 0.00 0.00 3.41
790 810 2.919602 TGGGAAGGGCTAGATCTGTTTT 59.080 45.455 5.18 0.00 0.00 2.43
791 811 3.333680 TGGGAAGGGCTAGATCTGTTTTT 59.666 43.478 5.18 0.00 0.00 1.94
825 845 9.933723 CCTTTCCTGTTTTCTGATGATATTTTT 57.066 29.630 0.00 0.00 0.00 1.94
881 901 3.866327 GGCGATTCTTTAGGACTTGAGTC 59.134 47.826 2.51 2.51 44.04 3.36
977 1007 0.519077 GTTTGGTGTGCAGCTAGCTC 59.481 55.000 16.15 10.60 45.94 4.09
1045 1077 3.547095 CAGTGACACTGCTGCTCG 58.453 61.111 22.06 0.00 39.62 5.03
1257 1298 2.568623 ATTGCAACGAGGACTCCTTT 57.431 45.000 0.00 0.00 31.76 3.11
1260 1301 1.347707 TGCAACGAGGACTCCTTTGAT 59.652 47.619 12.14 0.00 31.76 2.57
1265 1306 1.065854 CGAGGACTCCTTTGATGCCTT 60.066 52.381 0.00 0.00 31.76 4.35
1267 1308 1.005215 AGGACTCCTTTGATGCCTTGG 59.995 52.381 0.00 0.00 0.00 3.61
1268 1309 1.004745 GGACTCCTTTGATGCCTTGGA 59.995 52.381 0.00 0.00 0.00 3.53
1279 1320 1.448013 GCCTTGGACGACTGCCTAC 60.448 63.158 0.00 0.00 0.00 3.18
1325 1366 3.494924 CCGCTGATCATGACCAAGGATAA 60.495 47.826 5.50 0.00 0.00 1.75
1623 1667 0.603569 AAGCAGTCGTGACCTTCGAT 59.396 50.000 0.00 0.00 39.45 3.59
1674 1721 3.286694 TTGCTGCCAGGTCCCCATC 62.287 63.158 0.00 0.00 0.00 3.51
1712 1759 5.696270 CCAGCAACCAAGGTTCTTTTATTTC 59.304 40.000 0.51 0.00 36.00 2.17
1713 1760 5.402270 CAGCAACCAAGGTTCTTTTATTTCG 59.598 40.000 0.51 0.00 36.00 3.46
1765 1812 9.567776 TGAAAATCTCGCATATTTAGGGAATTA 57.432 29.630 0.00 0.00 0.00 1.40
1834 1881 2.990941 TCAACAGACGTTCGTCACTAC 58.009 47.619 23.70 1.11 37.59 2.73
1849 1896 4.258743 CGTCACTACGCATTACAAACTACG 60.259 45.833 0.00 0.00 43.12 3.51
1886 1933 2.937519 TGGCATGTTTGTGGACAAGTA 58.062 42.857 0.00 0.00 37.15 2.24
2000 2047 1.588674 GTCAACCATTCGTGTCCACA 58.411 50.000 0.00 0.00 0.00 4.17
2181 2228 3.555956 GCCGAGGTACATACATTTGACTG 59.444 47.826 0.00 0.00 0.00 3.51
2314 2367 6.011122 AGAATCCAGATTTGTATCCTTGCT 57.989 37.500 0.00 0.00 0.00 3.91
2393 2446 3.842126 CGACGCCACACATGAGCG 61.842 66.667 17.75 17.75 45.40 5.03
2398 2451 2.174107 CCACACATGAGCGTTGCG 59.826 61.111 0.00 0.00 0.00 4.85
2483 2547 6.605995 TCCTGTATTCCTTCGAGTTATTCTCA 59.394 38.462 0.00 0.00 42.88 3.27
2616 3742 5.710984 TCGTAGACAAAAGAGGAAGATGAC 58.289 41.667 0.00 0.00 0.00 3.06
2986 4125 2.746362 CAACAAGGTGCCTCTTGATCTC 59.254 50.000 18.91 0.00 44.98 2.75
3007 4146 4.116238 TCGATGTGCGTCTAAATATTGCA 58.884 39.130 0.00 0.00 41.80 4.08
3025 4164 1.451028 AGCAGAATCAGCGGAAGGC 60.451 57.895 0.00 0.00 44.05 4.35
3088 4227 2.742774 GGTGATGTGAAACCAGCAAAC 58.257 47.619 0.00 0.00 36.41 2.93
3094 4233 4.566545 TGTGAAACCAGCAAACATACTG 57.433 40.909 0.00 0.00 34.36 2.74
3167 4306 6.211587 TGATTGCAAGGGATAAAGAACATG 57.788 37.500 4.94 0.00 0.00 3.21
3350 6112 6.981762 ATTTTGTTGATGCTCACAAAACAA 57.018 29.167 11.33 7.28 41.18 2.83
3362 6124 6.145535 GCTCACAAAACAAAGAAGATACCAG 58.854 40.000 0.00 0.00 0.00 4.00
3445 6207 1.728490 GGATTGCCGTGGAATGCCTC 61.728 60.000 0.00 0.00 34.31 4.70
3590 6352 2.991190 GCATGCTTGTCCATCTGTTTTG 59.009 45.455 11.37 0.00 0.00 2.44
3594 6356 2.875296 CTTGTCCATCTGTTTTGGGGA 58.125 47.619 0.00 0.00 34.85 4.81
3732 6495 3.554752 CCATTGTGGCTTTCGTTCCAAAT 60.555 43.478 0.00 0.00 33.57 2.32
3733 6496 3.810310 TTGTGGCTTTCGTTCCAAATT 57.190 38.095 0.00 0.00 33.57 1.82
3735 6498 4.130286 TGTGGCTTTCGTTCCAAATTTT 57.870 36.364 0.00 0.00 33.57 1.82
3907 6728 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3908 6729 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3909 6730 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3910 6731 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3911 6732 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
3912 6733 4.871822 TCTCTCTCTCTCTCTCTCTCTGA 58.128 47.826 0.00 0.00 0.00 3.27
3913 6734 5.462240 TCTCTCTCTCTCTCTCTCTCTGAT 58.538 45.833 0.00 0.00 0.00 2.90
3914 6735 5.901853 TCTCTCTCTCTCTCTCTCTCTGATT 59.098 44.000 0.00 0.00 0.00 2.57
3915 6736 7.069344 TCTCTCTCTCTCTCTCTCTCTGATTA 58.931 42.308 0.00 0.00 0.00 1.75
4066 6887 0.447801 GCTGGTGTGGAATAGTTGCG 59.552 55.000 0.00 0.00 0.00 4.85
4080 6901 6.694844 GGAATAGTTGCGGTAGACTAGTTTAC 59.305 42.308 13.83 13.83 32.37 2.01
4179 7000 2.348666 CCGTTGATGATCGACTTTGGTC 59.651 50.000 10.85 0.00 38.97 4.02
4208 7029 3.391506 TGGCTAATCATCATCACTCCG 57.608 47.619 0.00 0.00 0.00 4.63
4211 7032 3.397482 GCTAATCATCATCACTCCGCTT 58.603 45.455 0.00 0.00 0.00 4.68
4296 7117 8.491958 AGTTAGGTTATCTATTTTGGAACGGAT 58.508 33.333 0.00 0.00 0.00 4.18
4306 7127 3.604875 TTGGAACGGATGGAGTAAGAC 57.395 47.619 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.736447 AGATCTTCCTAAAGTTGAAAGTGTG 57.264 36.000 0.00 0.00 33.95 3.82
6 7 9.167311 GCTCAATAAGATCTTCCTAAAGTTGAA 57.833 33.333 12.24 0.00 33.95 2.69
7 8 8.321353 TGCTCAATAAGATCTTCCTAAAGTTGA 58.679 33.333 12.24 10.57 33.95 3.18
8 9 8.394121 GTGCTCAATAAGATCTTCCTAAAGTTG 58.606 37.037 12.24 7.22 33.95 3.16
9 10 7.554476 GGTGCTCAATAAGATCTTCCTAAAGTT 59.446 37.037 12.24 0.00 33.95 2.66
10 11 7.051000 GGTGCTCAATAAGATCTTCCTAAAGT 58.949 38.462 12.24 0.00 33.95 2.66
11 12 7.050377 TGGTGCTCAATAAGATCTTCCTAAAG 58.950 38.462 12.24 5.91 0.00 1.85
12 13 6.957631 TGGTGCTCAATAAGATCTTCCTAAA 58.042 36.000 12.24 0.00 0.00 1.85
13 14 6.560003 TGGTGCTCAATAAGATCTTCCTAA 57.440 37.500 12.24 0.00 0.00 2.69
14 15 6.753913 ATGGTGCTCAATAAGATCTTCCTA 57.246 37.500 12.24 0.00 0.00 2.94
15 16 5.643421 ATGGTGCTCAATAAGATCTTCCT 57.357 39.130 12.24 0.00 0.00 3.36
16 17 5.009410 CCAATGGTGCTCAATAAGATCTTCC 59.991 44.000 12.24 4.93 0.00 3.46
17 18 5.506982 GCCAATGGTGCTCAATAAGATCTTC 60.507 44.000 12.24 0.00 0.00 2.87
18 19 4.340381 GCCAATGGTGCTCAATAAGATCTT 59.660 41.667 13.56 13.56 0.00 2.40
19 20 3.887716 GCCAATGGTGCTCAATAAGATCT 59.112 43.478 0.00 0.00 0.00 2.75
20 21 3.633525 TGCCAATGGTGCTCAATAAGATC 59.366 43.478 0.00 0.00 0.00 2.75
21 22 3.634504 TGCCAATGGTGCTCAATAAGAT 58.365 40.909 0.00 0.00 0.00 2.40
22 23 3.084536 TGCCAATGGTGCTCAATAAGA 57.915 42.857 0.00 0.00 0.00 2.10
23 24 3.872511 TTGCCAATGGTGCTCAATAAG 57.127 42.857 0.00 0.00 0.00 1.73
24 25 3.055963 CCTTTGCCAATGGTGCTCAATAA 60.056 43.478 0.00 0.00 0.00 1.40
25 26 2.496871 CCTTTGCCAATGGTGCTCAATA 59.503 45.455 0.00 0.00 0.00 1.90
26 27 1.276989 CCTTTGCCAATGGTGCTCAAT 59.723 47.619 0.00 0.00 0.00 2.57
27 28 0.680618 CCTTTGCCAATGGTGCTCAA 59.319 50.000 0.00 0.00 0.00 3.02
28 29 1.186917 CCCTTTGCCAATGGTGCTCA 61.187 55.000 8.40 0.00 0.00 4.26
29 30 1.593265 CCCTTTGCCAATGGTGCTC 59.407 57.895 8.40 0.00 0.00 4.26
30 31 2.586293 GCCCTTTGCCAATGGTGCT 61.586 57.895 8.40 0.00 0.00 4.40
31 32 2.046988 GCCCTTTGCCAATGGTGC 60.047 61.111 8.40 7.59 0.00 5.01
32 33 1.186917 TCAGCCCTTTGCCAATGGTG 61.187 55.000 8.40 1.92 42.71 4.17
33 34 0.471591 TTCAGCCCTTTGCCAATGGT 60.472 50.000 8.40 0.00 42.71 3.55
34 35 0.037046 GTTCAGCCCTTTGCCAATGG 60.037 55.000 2.42 2.42 42.71 3.16
35 36 0.680618 TGTTCAGCCCTTTGCCAATG 59.319 50.000 0.00 0.00 42.71 2.82
36 37 1.422531 TTGTTCAGCCCTTTGCCAAT 58.577 45.000 0.00 0.00 42.71 3.16
37 38 1.070445 CATTGTTCAGCCCTTTGCCAA 59.930 47.619 0.00 0.00 42.71 4.52
38 39 0.680618 CATTGTTCAGCCCTTTGCCA 59.319 50.000 0.00 0.00 42.71 4.92
39 40 0.968405 TCATTGTTCAGCCCTTTGCC 59.032 50.000 0.00 0.00 42.71 4.52
40 41 1.615392 AGTCATTGTTCAGCCCTTTGC 59.385 47.619 0.00 0.00 41.71 3.68
41 42 5.649782 ATTAGTCATTGTTCAGCCCTTTG 57.350 39.130 0.00 0.00 0.00 2.77
42 43 6.670695 AAATTAGTCATTGTTCAGCCCTTT 57.329 33.333 0.00 0.00 0.00 3.11
43 44 6.670695 AAAATTAGTCATTGTTCAGCCCTT 57.329 33.333 0.00 0.00 0.00 3.95
44 45 6.041979 ACAAAAATTAGTCATTGTTCAGCCCT 59.958 34.615 0.00 0.00 32.37 5.19
45 46 6.223120 ACAAAAATTAGTCATTGTTCAGCCC 58.777 36.000 0.00 0.00 32.37 5.19
46 47 8.986477 ATACAAAAATTAGTCATTGTTCAGCC 57.014 30.769 0.00 0.00 37.25 4.85
82 83 9.190858 GCAATACAAAACTTGTCATGAATACAA 57.809 29.630 0.00 0.00 44.12 2.41
83 84 8.355913 TGCAATACAAAACTTGTCATGAATACA 58.644 29.630 0.00 0.00 44.12 2.29
84 85 8.741101 TGCAATACAAAACTTGTCATGAATAC 57.259 30.769 0.00 0.00 44.12 1.89
85 86 9.926158 AATGCAATACAAAACTTGTCATGAATA 57.074 25.926 0.00 0.00 44.12 1.75
86 87 8.836268 AATGCAATACAAAACTTGTCATGAAT 57.164 26.923 0.00 0.00 44.12 2.57
87 88 9.926158 ATAATGCAATACAAAACTTGTCATGAA 57.074 25.926 0.00 0.00 44.12 2.57
88 89 9.926158 AATAATGCAATACAAAACTTGTCATGA 57.074 25.926 0.00 0.00 44.12 3.07
104 105 9.316730 CACCATAGCAAACTTAAATAATGCAAT 57.683 29.630 0.00 0.00 39.42 3.56
105 106 8.526978 TCACCATAGCAAACTTAAATAATGCAA 58.473 29.630 0.00 0.00 39.42 4.08
106 107 8.060931 TCACCATAGCAAACTTAAATAATGCA 57.939 30.769 0.00 0.00 39.42 3.96
107 108 9.533253 AATCACCATAGCAAACTTAAATAATGC 57.467 29.630 0.00 0.00 37.28 3.56
143 144 9.598517 AAAACAATAATCATCCGCATTACAAAT 57.401 25.926 0.00 0.00 0.00 2.32
144 145 8.994429 AAAACAATAATCATCCGCATTACAAA 57.006 26.923 0.00 0.00 0.00 2.83
146 147 9.676195 CATAAAACAATAATCATCCGCATTACA 57.324 29.630 0.00 0.00 0.00 2.41
147 148 9.677567 ACATAAAACAATAATCATCCGCATTAC 57.322 29.630 0.00 0.00 0.00 1.89
149 150 9.598517 AAACATAAAACAATAATCATCCGCATT 57.401 25.926 0.00 0.00 0.00 3.56
183 184 9.743057 TCAACAATCGAAAACAAACTGAATTAT 57.257 25.926 0.00 0.00 0.00 1.28
184 185 9.574458 TTCAACAATCGAAAACAAACTGAATTA 57.426 25.926 0.00 0.00 0.00 1.40
185 186 8.472683 TTCAACAATCGAAAACAAACTGAATT 57.527 26.923 0.00 0.00 0.00 2.17
186 187 8.647143 ATTCAACAATCGAAAACAAACTGAAT 57.353 26.923 0.00 0.00 0.00 2.57
187 188 8.472683 AATTCAACAATCGAAAACAAACTGAA 57.527 26.923 0.00 0.00 0.00 3.02
188 189 9.743057 ATAATTCAACAATCGAAAACAAACTGA 57.257 25.926 0.00 0.00 0.00 3.41
189 190 9.782028 CATAATTCAACAATCGAAAACAAACTG 57.218 29.630 0.00 0.00 0.00 3.16
190 191 9.528018 ACATAATTCAACAATCGAAAACAAACT 57.472 25.926 0.00 0.00 0.00 2.66
193 194 8.759641 CCAACATAATTCAACAATCGAAAACAA 58.240 29.630 0.00 0.00 0.00 2.83
194 195 8.138074 TCCAACATAATTCAACAATCGAAAACA 58.862 29.630 0.00 0.00 0.00 2.83
195 196 8.514136 TCCAACATAATTCAACAATCGAAAAC 57.486 30.769 0.00 0.00 0.00 2.43
196 197 9.703892 AATCCAACATAATTCAACAATCGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
197 198 9.703892 AAATCCAACATAATTCAACAATCGAAA 57.296 25.926 0.00 0.00 0.00 3.46
198 199 9.138062 CAAATCCAACATAATTCAACAATCGAA 57.862 29.630 0.00 0.00 0.00 3.71
199 200 8.518702 TCAAATCCAACATAATTCAACAATCGA 58.481 29.630 0.00 0.00 0.00 3.59
200 201 8.686397 TCAAATCCAACATAATTCAACAATCG 57.314 30.769 0.00 0.00 0.00 3.34
207 208 9.247126 CGCAAATATCAAATCCAACATAATTCA 57.753 29.630 0.00 0.00 0.00 2.57
208 209 8.702438 CCGCAAATATCAAATCCAACATAATTC 58.298 33.333 0.00 0.00 0.00 2.17
209 210 7.656948 CCCGCAAATATCAAATCCAACATAATT 59.343 33.333 0.00 0.00 0.00 1.40
210 211 7.153985 CCCGCAAATATCAAATCCAACATAAT 58.846 34.615 0.00 0.00 0.00 1.28
211 212 6.511416 CCCGCAAATATCAAATCCAACATAA 58.489 36.000 0.00 0.00 0.00 1.90
212 213 5.508825 GCCCGCAAATATCAAATCCAACATA 60.509 40.000 0.00 0.00 0.00 2.29
213 214 4.740334 GCCCGCAAATATCAAATCCAACAT 60.740 41.667 0.00 0.00 0.00 2.71
214 215 3.430098 GCCCGCAAATATCAAATCCAACA 60.430 43.478 0.00 0.00 0.00 3.33
215 216 3.123050 GCCCGCAAATATCAAATCCAAC 58.877 45.455 0.00 0.00 0.00 3.77
216 217 3.030291 AGCCCGCAAATATCAAATCCAA 58.970 40.909 0.00 0.00 0.00 3.53
217 218 2.361757 CAGCCCGCAAATATCAAATCCA 59.638 45.455 0.00 0.00 0.00 3.41
218 219 2.622942 TCAGCCCGCAAATATCAAATCC 59.377 45.455 0.00 0.00 0.00 3.01
219 220 3.988379 TCAGCCCGCAAATATCAAATC 57.012 42.857 0.00 0.00 0.00 2.17
220 221 3.890756 TCATCAGCCCGCAAATATCAAAT 59.109 39.130 0.00 0.00 0.00 2.32
221 222 3.286353 TCATCAGCCCGCAAATATCAAA 58.714 40.909 0.00 0.00 0.00 2.69
222 223 2.929641 TCATCAGCCCGCAAATATCAA 58.070 42.857 0.00 0.00 0.00 2.57
223 224 2.636647 TCATCAGCCCGCAAATATCA 57.363 45.000 0.00 0.00 0.00 2.15
224 225 4.497006 GCATATCATCAGCCCGCAAATATC 60.497 45.833 0.00 0.00 0.00 1.63
225 226 3.379372 GCATATCATCAGCCCGCAAATAT 59.621 43.478 0.00 0.00 0.00 1.28
226 227 2.749076 GCATATCATCAGCCCGCAAATA 59.251 45.455 0.00 0.00 0.00 1.40
227 228 1.542915 GCATATCATCAGCCCGCAAAT 59.457 47.619 0.00 0.00 0.00 2.32
228 229 0.953727 GCATATCATCAGCCCGCAAA 59.046 50.000 0.00 0.00 0.00 3.68
229 230 1.229975 CGCATATCATCAGCCCGCAA 61.230 55.000 0.00 0.00 0.00 4.85
230 231 1.668793 CGCATATCATCAGCCCGCA 60.669 57.895 0.00 0.00 0.00 5.69
231 232 2.393768 CCGCATATCATCAGCCCGC 61.394 63.158 0.00 0.00 0.00 6.13
232 233 1.742880 CCCGCATATCATCAGCCCG 60.743 63.158 0.00 0.00 0.00 6.13
233 234 0.254178 ATCCCGCATATCATCAGCCC 59.746 55.000 0.00 0.00 0.00 5.19
234 235 1.376543 CATCCCGCATATCATCAGCC 58.623 55.000 0.00 0.00 0.00 4.85
235 236 0.731417 GCATCCCGCATATCATCAGC 59.269 55.000 0.00 0.00 41.79 4.26
249 250 4.842091 CTTTGCGCCGCTGCATCC 62.842 66.667 11.67 0.00 45.78 3.51
250 251 3.729906 CTCTTTGCGCCGCTGCATC 62.730 63.158 11.67 0.00 45.78 3.91
251 252 3.807538 CTCTTTGCGCCGCTGCAT 61.808 61.111 11.67 0.00 45.78 3.96
254 255 4.456253 CTGCTCTTTGCGCCGCTG 62.456 66.667 11.67 0.34 46.63 5.18
255 256 4.687215 TCTGCTCTTTGCGCCGCT 62.687 61.111 11.67 0.00 46.63 5.52
256 257 3.726517 TTCTGCTCTTTGCGCCGC 61.727 61.111 4.18 0.00 46.63 6.53
257 258 2.174349 GTTCTGCTCTTTGCGCCG 59.826 61.111 4.18 0.00 46.63 6.46
258 259 2.563427 GGTTCTGCTCTTTGCGCC 59.437 61.111 4.18 0.00 46.63 6.53
259 260 2.563427 GGGTTCTGCTCTTTGCGC 59.437 61.111 0.00 0.00 46.63 6.09
260 261 2.863153 CGGGTTCTGCTCTTTGCG 59.137 61.111 0.00 0.00 46.63 4.85
261 262 1.589716 ATGCGGGTTCTGCTCTTTGC 61.590 55.000 0.30 0.00 43.25 3.68
262 263 1.667724 CTATGCGGGTTCTGCTCTTTG 59.332 52.381 0.30 0.00 0.00 2.77
263 264 2.014068 GCTATGCGGGTTCTGCTCTTT 61.014 52.381 0.30 0.00 0.00 2.52
264 265 0.462759 GCTATGCGGGTTCTGCTCTT 60.463 55.000 0.30 0.00 0.00 2.85
265 266 1.144936 GCTATGCGGGTTCTGCTCT 59.855 57.895 0.30 0.00 0.00 4.09
266 267 1.889573 GGCTATGCGGGTTCTGCTC 60.890 63.158 0.30 0.00 0.00 4.26
267 268 2.190578 GGCTATGCGGGTTCTGCT 59.809 61.111 0.30 0.00 0.00 4.24
268 269 3.272334 CGGCTATGCGGGTTCTGC 61.272 66.667 0.00 0.00 0.00 4.26
269 270 1.883084 GTCGGCTATGCGGGTTCTG 60.883 63.158 0.00 0.00 0.00 3.02
270 271 2.499685 GTCGGCTATGCGGGTTCT 59.500 61.111 0.00 0.00 0.00 3.01
271 272 2.588034 GGTCGGCTATGCGGGTTC 60.588 66.667 0.00 0.00 0.00 3.62
272 273 4.171103 GGGTCGGCTATGCGGGTT 62.171 66.667 0.00 0.00 0.00 4.11
275 276 2.632136 TTTACGGGTCGGCTATGCGG 62.632 60.000 0.00 0.00 0.00 5.69
276 277 0.806884 TTTTACGGGTCGGCTATGCG 60.807 55.000 0.00 0.00 0.00 4.73
277 278 1.371595 TTTTTACGGGTCGGCTATGC 58.628 50.000 0.00 0.00 0.00 3.14
278 279 2.286772 GCATTTTTACGGGTCGGCTATG 60.287 50.000 0.00 0.00 0.00 2.23
279 280 1.944709 GCATTTTTACGGGTCGGCTAT 59.055 47.619 0.00 0.00 0.00 2.97
280 281 1.338864 TGCATTTTTACGGGTCGGCTA 60.339 47.619 0.00 0.00 0.00 3.93
281 282 0.606944 TGCATTTTTACGGGTCGGCT 60.607 50.000 0.00 0.00 0.00 5.52
282 283 0.454196 ATGCATTTTTACGGGTCGGC 59.546 50.000 0.00 0.00 0.00 5.54
283 284 4.533222 GAATATGCATTTTTACGGGTCGG 58.467 43.478 3.54 0.00 0.00 4.79
284 285 4.533222 GGAATATGCATTTTTACGGGTCG 58.467 43.478 3.54 0.00 0.00 4.79
285 286 4.533222 CGGAATATGCATTTTTACGGGTC 58.467 43.478 3.54 0.00 0.00 4.46
286 287 3.243267 GCGGAATATGCATTTTTACGGGT 60.243 43.478 21.34 0.00 0.00 5.28
287 288 3.305110 GCGGAATATGCATTTTTACGGG 58.695 45.455 21.34 5.86 0.00 5.28
288 289 2.970609 CGCGGAATATGCATTTTTACGG 59.029 45.455 21.34 11.92 0.00 4.02
289 290 3.867665 TCGCGGAATATGCATTTTTACG 58.132 40.909 17.73 17.73 0.00 3.18
290 291 8.995906 GTATATTCGCGGAATATGCATTTTTAC 58.004 33.333 22.74 0.00 42.79 2.01
291 292 8.941977 AGTATATTCGCGGAATATGCATTTTTA 58.058 29.630 25.23 9.83 44.31 1.52
292 293 7.816640 AGTATATTCGCGGAATATGCATTTTT 58.183 30.769 25.23 0.00 44.31 1.94
293 294 7.377766 AGTATATTCGCGGAATATGCATTTT 57.622 32.000 25.23 2.48 44.31 1.82
294 295 6.985188 AGTATATTCGCGGAATATGCATTT 57.015 33.333 25.23 0.00 44.31 2.32
295 296 6.985188 AAGTATATTCGCGGAATATGCATT 57.015 33.333 25.23 18.35 44.31 3.56
296 297 6.985188 AAAGTATATTCGCGGAATATGCAT 57.015 33.333 25.23 17.91 44.31 3.96
297 298 6.795098 AAAAGTATATTCGCGGAATATGCA 57.205 33.333 25.23 12.11 44.31 3.96
318 319 6.069705 ACCTCCTAAACGGATCCATAAAAA 57.930 37.500 13.41 0.00 42.12 1.94
319 320 5.427481 AGACCTCCTAAACGGATCCATAAAA 59.573 40.000 13.41 0.00 42.12 1.52
320 321 4.966805 AGACCTCCTAAACGGATCCATAAA 59.033 41.667 13.41 0.00 42.12 1.40
321 322 4.344102 CAGACCTCCTAAACGGATCCATAA 59.656 45.833 13.41 0.00 42.12 1.90
322 323 3.895656 CAGACCTCCTAAACGGATCCATA 59.104 47.826 13.41 0.60 42.12 2.74
323 324 2.700897 CAGACCTCCTAAACGGATCCAT 59.299 50.000 13.41 0.00 42.12 3.41
324 325 2.108168 CAGACCTCCTAAACGGATCCA 58.892 52.381 13.41 0.00 42.12 3.41
325 326 1.202545 GCAGACCTCCTAAACGGATCC 60.203 57.143 0.00 0.00 42.12 3.36
326 327 1.480954 TGCAGACCTCCTAAACGGATC 59.519 52.381 0.00 0.00 42.12 3.36
327 328 1.568504 TGCAGACCTCCTAAACGGAT 58.431 50.000 0.00 0.00 42.12 4.18
328 329 1.480954 GATGCAGACCTCCTAAACGGA 59.519 52.381 0.00 0.00 40.30 4.69
329 330 1.802880 CGATGCAGACCTCCTAAACGG 60.803 57.143 0.00 0.00 0.00 4.44
330 331 1.560923 CGATGCAGACCTCCTAAACG 58.439 55.000 0.00 0.00 0.00 3.60
331 332 1.291132 GCGATGCAGACCTCCTAAAC 58.709 55.000 0.00 0.00 0.00 2.01
332 333 0.178068 GGCGATGCAGACCTCCTAAA 59.822 55.000 0.00 0.00 0.00 1.85
333 334 1.686325 GGGCGATGCAGACCTCCTAA 61.686 60.000 0.00 0.00 36.04 2.69
334 335 2.134287 GGGCGATGCAGACCTCCTA 61.134 63.158 0.00 0.00 36.04 2.94
335 336 3.474570 GGGCGATGCAGACCTCCT 61.475 66.667 0.00 0.00 36.04 3.69
336 337 4.899239 CGGGCGATGCAGACCTCC 62.899 72.222 0.00 0.00 37.08 4.30
364 365 0.919981 TTCGCGCAAAACAGCTTTTG 59.080 45.000 8.75 6.52 46.30 2.44
365 366 0.920664 GTTCGCGCAAAACAGCTTTT 59.079 45.000 8.75 0.00 0.00 2.27
366 367 0.100503 AGTTCGCGCAAAACAGCTTT 59.899 45.000 20.74 1.54 0.00 3.51
367 368 0.592247 CAGTTCGCGCAAAACAGCTT 60.592 50.000 20.74 1.86 0.00 3.74
368 369 1.009675 CAGTTCGCGCAAAACAGCT 60.010 52.632 20.74 2.17 0.00 4.24
369 370 2.639000 GCAGTTCGCGCAAAACAGC 61.639 57.895 19.26 19.26 33.04 4.40
370 371 0.865218 TTGCAGTTCGCGCAAAACAG 60.865 50.000 20.74 15.30 45.91 3.16
371 372 1.137614 TTGCAGTTCGCGCAAAACA 59.862 47.368 20.74 3.47 45.91 2.83
372 373 3.990141 TTGCAGTTCGCGCAAAAC 58.010 50.000 8.75 11.52 45.91 2.43
376 377 3.222126 CTCGTTTGCAGTTCGCGCA 62.222 57.895 8.75 0.00 46.97 6.09
377 378 2.497628 CTCGTTTGCAGTTCGCGC 60.498 61.111 0.00 0.00 46.97 6.86
378 379 0.315869 AAACTCGTTTGCAGTTCGCG 60.316 50.000 0.00 0.00 46.97 5.87
379 380 1.512771 CAAAACTCGTTTGCAGTTCGC 59.487 47.619 0.00 0.00 40.25 4.70
388 389 0.661020 CCGGCTCACAAAACTCGTTT 59.339 50.000 0.00 0.00 0.00 3.60
389 390 1.782028 GCCGGCTCACAAAACTCGTT 61.782 55.000 22.15 0.00 0.00 3.85
390 391 2.251642 GCCGGCTCACAAAACTCGT 61.252 57.895 22.15 0.00 0.00 4.18
391 392 2.556287 GCCGGCTCACAAAACTCG 59.444 61.111 22.15 0.00 0.00 4.18
392 393 2.556287 CGCCGGCTCACAAAACTC 59.444 61.111 26.68 0.00 0.00 3.01
393 394 2.978010 CCGCCGGCTCACAAAACT 60.978 61.111 26.68 0.00 0.00 2.66
394 395 4.038080 CCCGCCGGCTCACAAAAC 62.038 66.667 26.68 0.00 0.00 2.43
395 396 3.561120 ATCCCGCCGGCTCACAAAA 62.561 57.895 26.68 2.77 0.00 2.44
396 397 4.028490 ATCCCGCCGGCTCACAAA 62.028 61.111 26.68 3.95 0.00 2.83
397 398 4.776322 CATCCCGCCGGCTCACAA 62.776 66.667 26.68 5.54 0.00 3.33
406 407 3.161450 TAGCAGACCCATCCCGCC 61.161 66.667 0.00 0.00 0.00 6.13
407 408 2.093537 CTCTAGCAGACCCATCCCGC 62.094 65.000 0.00 0.00 0.00 6.13
408 409 0.757188 ACTCTAGCAGACCCATCCCG 60.757 60.000 0.00 0.00 0.00 5.14
409 410 1.139853 CAACTCTAGCAGACCCATCCC 59.860 57.143 0.00 0.00 0.00 3.85
410 411 1.474143 GCAACTCTAGCAGACCCATCC 60.474 57.143 0.00 0.00 0.00 3.51
411 412 1.484240 AGCAACTCTAGCAGACCCATC 59.516 52.381 0.00 0.00 0.00 3.51
412 413 1.484240 GAGCAACTCTAGCAGACCCAT 59.516 52.381 0.00 0.00 0.00 4.00
413 414 0.898320 GAGCAACTCTAGCAGACCCA 59.102 55.000 0.00 0.00 0.00 4.51
414 415 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
415 416 3.445805 ACTAAGAGCAACTCTAGCAGACC 59.554 47.826 0.00 0.00 40.28 3.85
416 417 4.712122 ACTAAGAGCAACTCTAGCAGAC 57.288 45.455 0.00 0.00 40.28 3.51
417 418 5.502079 ACTACTAAGAGCAACTCTAGCAGA 58.498 41.667 0.00 0.00 40.28 4.26
418 419 5.220970 GGACTACTAAGAGCAACTCTAGCAG 60.221 48.000 0.00 0.00 40.28 4.24
419 420 4.641094 GGACTACTAAGAGCAACTCTAGCA 59.359 45.833 0.00 0.00 40.28 3.49
420 421 4.885325 AGGACTACTAAGAGCAACTCTAGC 59.115 45.833 0.00 0.00 40.28 3.42
421 422 6.600032 TGAAGGACTACTAAGAGCAACTCTAG 59.400 42.308 0.00 0.00 40.28 2.43
422 423 6.482524 TGAAGGACTACTAAGAGCAACTCTA 58.517 40.000 0.00 0.00 40.28 2.43
423 424 5.326069 TGAAGGACTACTAAGAGCAACTCT 58.674 41.667 0.00 0.00 43.37 3.24
424 425 5.184287 ACTGAAGGACTACTAAGAGCAACTC 59.816 44.000 0.00 0.00 0.00 3.01
425 426 5.047660 CACTGAAGGACTACTAAGAGCAACT 60.048 44.000 0.00 0.00 0.00 3.16
426 427 5.047943 TCACTGAAGGACTACTAAGAGCAAC 60.048 44.000 0.00 0.00 0.00 4.17
427 428 5.077564 TCACTGAAGGACTACTAAGAGCAA 58.922 41.667 0.00 0.00 0.00 3.91
428 429 4.663334 TCACTGAAGGACTACTAAGAGCA 58.337 43.478 0.00 0.00 0.00 4.26
429 430 5.184287 ACTTCACTGAAGGACTACTAAGAGC 59.816 44.000 20.58 0.00 43.25 4.09
430 431 6.349777 CCACTTCACTGAAGGACTACTAAGAG 60.350 46.154 20.58 0.00 43.25 2.85
431 432 5.477291 CCACTTCACTGAAGGACTACTAAGA 59.523 44.000 20.58 0.00 43.25 2.10
432 433 5.336849 CCCACTTCACTGAAGGACTACTAAG 60.337 48.000 20.58 0.00 43.25 2.18
433 434 4.527038 CCCACTTCACTGAAGGACTACTAA 59.473 45.833 20.58 0.00 43.25 2.24
434 435 4.087182 CCCACTTCACTGAAGGACTACTA 58.913 47.826 20.58 0.00 43.25 1.82
435 436 2.900546 CCCACTTCACTGAAGGACTACT 59.099 50.000 20.58 0.00 43.25 2.57
436 437 2.613223 GCCCACTTCACTGAAGGACTAC 60.613 54.545 20.58 4.96 43.25 2.73
437 438 1.623811 GCCCACTTCACTGAAGGACTA 59.376 52.381 20.58 0.00 43.25 2.59
438 439 0.398318 GCCCACTTCACTGAAGGACT 59.602 55.000 20.58 0.00 43.25 3.85
439 440 0.951040 CGCCCACTTCACTGAAGGAC 60.951 60.000 20.58 7.78 43.25 3.85
440 441 1.118965 TCGCCCACTTCACTGAAGGA 61.119 55.000 20.58 7.06 43.25 3.36
441 442 0.671781 CTCGCCCACTTCACTGAAGG 60.672 60.000 20.58 10.76 43.25 3.46
442 443 1.294659 GCTCGCCCACTTCACTGAAG 61.295 60.000 16.01 16.01 44.37 3.02
443 444 1.301716 GCTCGCCCACTTCACTGAA 60.302 57.895 0.00 0.00 0.00 3.02
444 445 2.343758 GCTCGCCCACTTCACTGA 59.656 61.111 0.00 0.00 0.00 3.41
445 446 2.743928 GGCTCGCCCACTTCACTG 60.744 66.667 0.00 0.00 0.00 3.66
446 447 3.241530 TGGCTCGCCCACTTCACT 61.242 61.111 5.33 0.00 39.18 3.41
447 448 2.743928 CTGGCTCGCCCACTTCAC 60.744 66.667 5.33 0.00 39.18 3.18
448 449 4.704833 GCTGGCTCGCCCACTTCA 62.705 66.667 5.33 0.00 39.18 3.02
449 450 4.704833 TGCTGGCTCGCCCACTTC 62.705 66.667 5.33 0.00 39.18 3.01
457 458 3.129502 CACCCATGTGCTGGCTCG 61.130 66.667 0.00 0.00 44.46 5.03
458 459 2.753043 CCACCCATGTGCTGGCTC 60.753 66.667 0.00 0.00 44.46 4.70
459 460 3.259314 TCCACCCATGTGCTGGCT 61.259 61.111 0.00 0.00 44.46 4.75
460 461 3.064324 GTCCACCCATGTGCTGGC 61.064 66.667 0.00 0.00 44.46 4.85
461 462 1.676635 CAGTCCACCCATGTGCTGG 60.677 63.158 0.00 0.00 45.51 4.85
462 463 0.034767 ATCAGTCCACCCATGTGCTG 60.035 55.000 0.00 0.00 41.35 4.41
463 464 0.034767 CATCAGTCCACCCATGTGCT 60.035 55.000 0.00 0.00 41.35 4.40
464 465 1.033746 CCATCAGTCCACCCATGTGC 61.034 60.000 0.00 0.00 41.35 4.57
465 466 0.329261 ACCATCAGTCCACCCATGTG 59.671 55.000 0.00 0.00 42.39 3.21
466 467 0.620556 GACCATCAGTCCACCCATGT 59.379 55.000 0.00 0.00 39.84 3.21
467 468 3.483954 GACCATCAGTCCACCCATG 57.516 57.895 0.00 0.00 39.84 3.66
493 494 0.961019 TGAGCCGAGCAATGCTTTTT 59.039 45.000 9.91 0.00 39.88 1.94
494 495 0.961019 TTGAGCCGAGCAATGCTTTT 59.039 45.000 9.91 0.00 39.88 2.27
495 496 1.180029 ATTGAGCCGAGCAATGCTTT 58.820 45.000 9.91 0.00 39.88 3.51
496 497 1.180029 AATTGAGCCGAGCAATGCTT 58.820 45.000 9.91 0.00 39.88 3.91
497 498 2.042686 TAATTGAGCCGAGCAATGCT 57.957 45.000 7.79 7.79 43.88 3.79
498 499 3.047796 CAATAATTGAGCCGAGCAATGC 58.952 45.455 0.00 0.00 36.20 3.56
499 500 4.556942 TCAATAATTGAGCCGAGCAATG 57.443 40.909 0.00 0.00 36.20 2.82
500 501 4.641989 ACTTCAATAATTGAGCCGAGCAAT 59.358 37.500 0.00 0.00 41.38 3.56
501 502 4.009675 ACTTCAATAATTGAGCCGAGCAA 58.990 39.130 0.00 0.00 41.38 3.91
502 503 3.609853 ACTTCAATAATTGAGCCGAGCA 58.390 40.909 0.00 0.00 41.38 4.26
503 504 5.237344 ACATACTTCAATAATTGAGCCGAGC 59.763 40.000 0.00 0.00 41.38 5.03
504 505 6.851222 ACATACTTCAATAATTGAGCCGAG 57.149 37.500 0.00 0.00 41.38 4.63
505 506 7.438160 CACTACATACTTCAATAATTGAGCCGA 59.562 37.037 0.00 0.00 41.38 5.54
506 507 7.438160 TCACTACATACTTCAATAATTGAGCCG 59.562 37.037 0.00 0.00 41.38 5.52
507 508 8.662781 TCACTACATACTTCAATAATTGAGCC 57.337 34.615 0.00 0.00 41.38 4.70
508 509 9.319143 ACTCACTACATACTTCAATAATTGAGC 57.681 33.333 0.00 0.00 41.38 4.26
517 518 9.074576 TGAAGAACTACTCACTACATACTTCAA 57.925 33.333 0.00 0.00 37.59 2.69
518 519 8.631480 TGAAGAACTACTCACTACATACTTCA 57.369 34.615 0.00 0.00 37.98 3.02
519 520 9.509855 CATGAAGAACTACTCACTACATACTTC 57.490 37.037 0.00 0.00 0.00 3.01
520 521 9.026121 ACATGAAGAACTACTCACTACATACTT 57.974 33.333 0.00 0.00 0.00 2.24
521 522 8.582657 ACATGAAGAACTACTCACTACATACT 57.417 34.615 0.00 0.00 0.00 2.12
522 523 9.938670 CTACATGAAGAACTACTCACTACATAC 57.061 37.037 0.00 0.00 0.00 2.39
523 524 9.901172 TCTACATGAAGAACTACTCACTACATA 57.099 33.333 0.00 0.00 0.00 2.29
524 525 8.809468 TCTACATGAAGAACTACTCACTACAT 57.191 34.615 0.00 0.00 0.00 2.29
525 526 8.809468 ATCTACATGAAGAACTACTCACTACA 57.191 34.615 0.00 0.00 0.00 2.74
526 527 8.347035 GGATCTACATGAAGAACTACTCACTAC 58.653 40.741 0.00 0.00 0.00 2.73
527 528 7.502895 GGGATCTACATGAAGAACTACTCACTA 59.497 40.741 0.00 0.00 0.00 2.74
528 529 6.322712 GGGATCTACATGAAGAACTACTCACT 59.677 42.308 0.00 0.00 0.00 3.41
529 530 6.096987 TGGGATCTACATGAAGAACTACTCAC 59.903 42.308 0.00 0.00 0.00 3.51
530 531 6.194967 TGGGATCTACATGAAGAACTACTCA 58.805 40.000 0.00 0.00 0.00 3.41
531 532 6.716934 TGGGATCTACATGAAGAACTACTC 57.283 41.667 0.00 0.00 0.00 2.59
532 533 6.268847 GGATGGGATCTACATGAAGAACTACT 59.731 42.308 0.00 0.00 0.00 2.57
533 534 6.459923 GGATGGGATCTACATGAAGAACTAC 58.540 44.000 0.00 0.00 0.00 2.73
534 535 5.544176 GGGATGGGATCTACATGAAGAACTA 59.456 44.000 0.00 0.00 0.00 2.24
535 536 4.349342 GGGATGGGATCTACATGAAGAACT 59.651 45.833 0.00 0.00 0.00 3.01
536 537 4.103153 TGGGATGGGATCTACATGAAGAAC 59.897 45.833 0.00 0.00 0.00 3.01
537 538 4.103153 GTGGGATGGGATCTACATGAAGAA 59.897 45.833 0.00 0.00 0.00 2.52
538 539 3.648067 GTGGGATGGGATCTACATGAAGA 59.352 47.826 0.00 0.00 0.00 2.87
539 540 3.392285 TGTGGGATGGGATCTACATGAAG 59.608 47.826 0.00 0.00 0.00 3.02
540 541 3.136443 GTGTGGGATGGGATCTACATGAA 59.864 47.826 0.00 0.00 32.29 2.57
541 542 2.705658 GTGTGGGATGGGATCTACATGA 59.294 50.000 0.00 0.00 32.29 3.07
542 543 2.707791 AGTGTGGGATGGGATCTACATG 59.292 50.000 7.94 0.00 32.29 3.21
543 544 2.975489 GAGTGTGGGATGGGATCTACAT 59.025 50.000 3.59 3.59 32.29 2.29
544 545 2.398588 GAGTGTGGGATGGGATCTACA 58.601 52.381 0.00 0.00 0.00 2.74
545 546 1.341531 CGAGTGTGGGATGGGATCTAC 59.658 57.143 0.00 0.00 0.00 2.59
546 547 1.063190 ACGAGTGTGGGATGGGATCTA 60.063 52.381 0.00 0.00 0.00 1.98
547 548 0.325671 ACGAGTGTGGGATGGGATCT 60.326 55.000 0.00 0.00 0.00 2.75
548 549 0.541863 AACGAGTGTGGGATGGGATC 59.458 55.000 0.00 0.00 0.00 3.36
549 550 0.541863 GAACGAGTGTGGGATGGGAT 59.458 55.000 0.00 0.00 0.00 3.85
550 551 0.544357 AGAACGAGTGTGGGATGGGA 60.544 55.000 0.00 0.00 0.00 4.37
551 552 1.134788 GTAGAACGAGTGTGGGATGGG 60.135 57.143 0.00 0.00 0.00 4.00
552 553 1.134788 GGTAGAACGAGTGTGGGATGG 60.135 57.143 0.00 0.00 0.00 3.51
553 554 1.469251 CGGTAGAACGAGTGTGGGATG 60.469 57.143 0.00 0.00 35.47 3.51
554 555 0.815734 CGGTAGAACGAGTGTGGGAT 59.184 55.000 0.00 0.00 35.47 3.85
555 556 0.538057 ACGGTAGAACGAGTGTGGGA 60.538 55.000 0.00 0.00 37.61 4.37
556 557 0.109412 GACGGTAGAACGAGTGTGGG 60.109 60.000 0.00 0.00 37.61 4.61
557 558 0.453950 CGACGGTAGAACGAGTGTGG 60.454 60.000 0.00 0.00 37.61 4.17
558 559 0.236711 ACGACGGTAGAACGAGTGTG 59.763 55.000 0.00 0.00 37.61 3.82
559 560 0.514691 GACGACGGTAGAACGAGTGT 59.485 55.000 0.00 0.00 37.61 3.55
560 561 0.795085 AGACGACGGTAGAACGAGTG 59.205 55.000 0.00 0.00 37.61 3.51
561 562 1.517242 AAGACGACGGTAGAACGAGT 58.483 50.000 0.00 0.00 37.61 4.18
562 563 2.159234 AGAAAGACGACGGTAGAACGAG 59.841 50.000 0.00 0.00 37.61 4.18
563 564 2.146342 AGAAAGACGACGGTAGAACGA 58.854 47.619 0.00 0.00 37.61 3.85
564 565 2.608467 AGAAAGACGACGGTAGAACG 57.392 50.000 0.00 0.00 40.31 3.95
565 566 3.240884 GGAAGAAAGACGACGGTAGAAC 58.759 50.000 0.00 0.00 0.00 3.01
566 567 2.886523 TGGAAGAAAGACGACGGTAGAA 59.113 45.455 0.00 0.00 0.00 2.10
567 568 2.227388 GTGGAAGAAAGACGACGGTAGA 59.773 50.000 0.00 0.00 0.00 2.59
568 569 2.593257 GTGGAAGAAAGACGACGGTAG 58.407 52.381 0.00 0.00 0.00 3.18
569 570 1.270550 GGTGGAAGAAAGACGACGGTA 59.729 52.381 0.00 0.00 0.00 4.02
570 571 0.033090 GGTGGAAGAAAGACGACGGT 59.967 55.000 0.00 0.00 0.00 4.83
571 572 0.669625 GGGTGGAAGAAAGACGACGG 60.670 60.000 0.00 0.00 0.00 4.79
572 573 0.032952 TGGGTGGAAGAAAGACGACG 59.967 55.000 0.00 0.00 0.00 5.12
573 574 1.797025 CTGGGTGGAAGAAAGACGAC 58.203 55.000 0.00 0.00 0.00 4.34
574 575 0.034896 GCTGGGTGGAAGAAAGACGA 59.965 55.000 0.00 0.00 0.00 4.20
575 576 0.035458 AGCTGGGTGGAAGAAAGACG 59.965 55.000 0.00 0.00 0.00 4.18
576 577 1.882623 CAAGCTGGGTGGAAGAAAGAC 59.117 52.381 0.00 0.00 0.00 3.01
577 578 1.202927 CCAAGCTGGGTGGAAGAAAGA 60.203 52.381 0.00 0.00 38.54 2.52
578 579 1.251251 CCAAGCTGGGTGGAAGAAAG 58.749 55.000 0.00 0.00 38.54 2.62
579 580 0.555769 ACCAAGCTGGGTGGAAGAAA 59.444 50.000 13.58 0.00 43.37 2.52
580 581 0.555769 AACCAAGCTGGGTGGAAGAA 59.444 50.000 15.39 0.00 43.37 2.52
581 582 0.110486 GAACCAAGCTGGGTGGAAGA 59.890 55.000 15.39 0.00 37.76 2.87
582 583 0.111253 AGAACCAAGCTGGGTGGAAG 59.889 55.000 15.39 0.00 37.76 3.46
583 584 0.555769 AAGAACCAAGCTGGGTGGAA 59.444 50.000 15.39 0.00 37.76 3.53
584 585 0.555769 AAAGAACCAAGCTGGGTGGA 59.444 50.000 15.39 0.00 37.76 4.02
691 702 0.246086 CAGCTTCTCTCTCACGGCTT 59.754 55.000 0.00 0.00 0.00 4.35
706 717 4.390556 ACGGCCTCCCTCTCAGCT 62.391 66.667 0.00 0.00 0.00 4.24
711 722 4.698625 AACGGACGGCCTCCCTCT 62.699 66.667 5.33 0.00 35.21 3.69
720 731 1.449601 CTTGGATGGGAACGGACGG 60.450 63.158 0.00 0.00 0.00 4.79
756 776 2.365095 CTTCCCATACCTCCGGCGAC 62.365 65.000 9.30 0.00 0.00 5.19
761 781 0.471211 TAGCCCTTCCCATACCTCCG 60.471 60.000 0.00 0.00 0.00 4.63
790 810 8.356000 TCAGAAAACAGGAAAGGAGTTAAAAA 57.644 30.769 0.00 0.00 0.00 1.94
791 811 7.948034 TCAGAAAACAGGAAAGGAGTTAAAA 57.052 32.000 0.00 0.00 0.00 1.52
792 812 7.777910 TCATCAGAAAACAGGAAAGGAGTTAAA 59.222 33.333 0.00 0.00 0.00 1.52
793 813 7.287061 TCATCAGAAAACAGGAAAGGAGTTAA 58.713 34.615 0.00 0.00 0.00 2.01
794 814 6.837312 TCATCAGAAAACAGGAAAGGAGTTA 58.163 36.000 0.00 0.00 0.00 2.24
795 815 5.694995 TCATCAGAAAACAGGAAAGGAGTT 58.305 37.500 0.00 0.00 0.00 3.01
796 816 5.310409 TCATCAGAAAACAGGAAAGGAGT 57.690 39.130 0.00 0.00 0.00 3.85
797 817 8.517062 AATATCATCAGAAAACAGGAAAGGAG 57.483 34.615 0.00 0.00 0.00 3.69
798 818 8.884124 AAATATCATCAGAAAACAGGAAAGGA 57.116 30.769 0.00 0.00 0.00 3.36
799 819 9.933723 AAAAATATCATCAGAAAACAGGAAAGG 57.066 29.630 0.00 0.00 0.00 3.11
963 985 2.593346 ACTATGAGCTAGCTGCACAC 57.407 50.000 24.99 7.79 44.43 3.82
977 1007 6.974932 TGCTTTTCTCTTGCTCTTACTATG 57.025 37.500 0.00 0.00 0.00 2.23
982 1012 4.389992 CGTCATGCTTTTCTCTTGCTCTTA 59.610 41.667 0.00 0.00 0.00 2.10
994 1024 2.038557 AGTAGTGGGTCGTCATGCTTTT 59.961 45.455 0.00 0.00 0.00 2.27
1257 1298 1.375908 GCAGTCGTCCAAGGCATCA 60.376 57.895 0.00 0.00 0.00 3.07
1260 1301 1.911269 TAGGCAGTCGTCCAAGGCA 60.911 57.895 0.00 0.00 0.00 4.75
1265 1306 0.242825 CGAAAGTAGGCAGTCGTCCA 59.757 55.000 0.00 0.00 0.00 4.02
1267 1308 0.388134 TGCGAAAGTAGGCAGTCGTC 60.388 55.000 0.00 0.00 35.93 4.20
1268 1309 1.663739 TGCGAAAGTAGGCAGTCGT 59.336 52.632 0.00 0.00 35.93 4.34
1279 1320 0.795085 CTGGAGTTGAGCTGCGAAAG 59.205 55.000 0.00 0.00 38.50 2.62
1325 1366 3.660501 TGTCGTTCAAGCTGTAGATGT 57.339 42.857 0.00 0.00 0.00 3.06
1440 1481 4.002982 TCAATTTGCAGTCGTAGCAGAAT 58.997 39.130 0.00 0.00 43.75 2.40
1585 1629 2.127232 CGCAAGGGGGCCCATTTAG 61.127 63.158 26.86 15.78 38.92 1.85
1589 1633 4.447342 CTTCGCAAGGGGGCCCAT 62.447 66.667 26.86 16.71 38.92 4.00
1614 1658 0.109272 TGACAGCGTCATCGAAGGTC 60.109 55.000 7.20 0.00 37.67 3.85
1623 1667 0.250124 ATTTCCCGTTGACAGCGTCA 60.250 50.000 10.87 7.20 41.09 4.35
1712 1759 2.905075 TGCATATTTCAGTGAGGTCCG 58.095 47.619 0.00 0.00 0.00 4.79
1713 1760 5.643379 TTTTGCATATTTCAGTGAGGTCC 57.357 39.130 0.00 0.00 0.00 4.46
1834 1881 5.288712 AGTCATCTTCGTAGTTTGTAATGCG 59.711 40.000 0.00 0.00 0.00 4.73
1886 1933 2.037251 AGCGATGTGAAGTTGTACCAGT 59.963 45.455 0.00 0.00 0.00 4.00
1920 1967 3.536158 TTCTTCCGCAAGAAAACATCG 57.464 42.857 0.00 0.00 44.24 3.84
2314 2367 1.240256 GTGTTGTGGCATTTCCCGTA 58.760 50.000 0.00 0.00 0.00 4.02
2393 2446 2.430493 GGAAACATTTCCGCGCAAC 58.570 52.632 8.75 0.00 46.36 4.17
2483 2547 4.751060 TGGCAATCGAAAATAGTACTCGT 58.249 39.130 0.00 0.00 34.27 4.18
2616 3742 9.573133 GTCCTCCATTTTTCATATAAAGTTGTG 57.427 33.333 0.00 0.00 0.00 3.33
2771 3898 4.714632 ACAGGCTTCTTTACTGCAACTAA 58.285 39.130 0.00 0.00 35.70 2.24
2986 4125 4.448891 CTGCAATATTTAGACGCACATCG 58.551 43.478 0.00 0.00 45.38 3.84
3007 4146 1.451028 GCCTTCCGCTGATTCTGCT 60.451 57.895 12.85 0.00 0.00 4.24
3088 4227 8.939929 GGTACATAATCATCATCCAACAGTATG 58.060 37.037 0.00 0.00 46.00 2.39
3167 4306 1.825090 TCACCAATGACAGATGTGGC 58.175 50.000 0.00 0.00 34.27 5.01
3362 6124 5.310720 AGTTCCTTGTCAAACAGTTCAAC 57.689 39.130 0.00 0.00 0.00 3.18
3445 6207 5.416639 TGGTCTTTCATCCACATCAAGATTG 59.583 40.000 0.00 0.00 0.00 2.67
3590 6352 2.549992 GGAACCAGCAAAAACATTCCCC 60.550 50.000 0.00 0.00 31.28 4.81
3619 6382 6.716173 GGGATTACCAACTTAACAAAGGTACA 59.284 38.462 0.00 0.00 39.85 2.90
3703 6466 0.400213 AAAGCCACAATGGTCCGAGA 59.600 50.000 0.00 0.00 40.46 4.04
3704 6467 0.804989 GAAAGCCACAATGGTCCGAG 59.195 55.000 0.00 0.00 40.46 4.63
3915 6736 9.764363 GTTTTGGAAGAAAACAGAGGAATAATT 57.236 29.630 0.00 0.00 39.30 1.40
4066 6887 3.693654 GCAGCGAGTAAACTAGTCTACC 58.306 50.000 2.64 0.00 0.00 3.18
4144 6965 1.072505 AACGGACGGAGCCAAACAT 59.927 52.632 0.00 0.00 0.00 2.71
4179 7000 4.347360 TGATGATTAGCCATGTCTCAGG 57.653 45.455 0.00 0.00 0.00 3.86
4208 7029 5.221581 TGGAACGGAGGGAGTATATAAAAGC 60.222 44.000 0.00 0.00 0.00 3.51
4211 7032 6.811634 TTTGGAACGGAGGGAGTATATAAA 57.188 37.500 0.00 0.00 0.00 1.40
4296 7117 1.951209 TGGGCATCTGTCTTACTCCA 58.049 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.