Multiple sequence alignment - TraesCS7D01G545300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G545300 chr7D 100.000 3324 0 0 1 3324 632445408 632442085 0.000000e+00 6139.0
1 TraesCS7D01G545300 chr7D 82.286 1846 245 39 1334 3129 632892649 632890836 0.000000e+00 1522.0
2 TraesCS7D01G545300 chr7D 83.481 902 88 16 1 876 632774577 632775443 0.000000e+00 784.0
3 TraesCS7D01G545300 chr7D 86.753 385 23 6 1966 2346 632644326 632644686 1.440000e-108 403.0
4 TraesCS7D01G545300 chr7A 92.841 2151 125 13 1116 3251 734370502 734372638 0.000000e+00 3092.0
5 TraesCS7D01G545300 chr7A 81.507 1871 267 50 882 2714 734316067 734317896 0.000000e+00 1465.0
6 TraesCS7D01G545300 chr7A 81.653 1319 170 35 1686 2961 734707145 734708434 0.000000e+00 1029.0
7 TraesCS7D01G545300 chr7A 85.777 914 80 17 1 876 734888821 734889722 0.000000e+00 922.0
8 TraesCS7D01G545300 chr7A 89.838 433 41 1 1267 1699 734524157 734524586 1.350000e-153 553.0
9 TraesCS7D01G545300 chr7A 73.206 627 125 22 233 836 734662843 734663449 1.570000e-43 187.0
10 TraesCS7D01G545300 chr7A 73.005 426 94 9 1875 2290 734287895 734287481 2.690000e-26 130.0
11 TraesCS7D01G545300 chr7A 77.990 209 30 6 610 802 734872754 734872546 2.100000e-22 117.0
12 TraesCS7D01G545300 chr7B 85.039 909 85 17 7 876 748609550 748608654 0.000000e+00 878.0
13 TraesCS7D01G545300 chr7B 75.206 1214 234 39 1144 2338 748877448 748876283 2.290000e-141 512.0
14 TraesCS7D01G545300 chr7B 84.861 469 47 7 7 465 749299776 749299322 5.060000e-123 451.0
15 TraesCS7D01G545300 chr7B 82.524 412 68 3 1130 1539 746095761 746096170 3.150000e-95 359.0
16 TraesCS7D01G545300 chr7B 84.894 331 34 5 492 806 749292813 749292483 1.490000e-83 320.0
17 TraesCS7D01G545300 chr7B 73.186 634 127 24 226 836 744902990 744903603 4.380000e-44 189.0
18 TraesCS7D01G545300 chr7B 73.217 631 126 24 229 836 745066543 745065933 4.380000e-44 189.0
19 TraesCS7D01G545300 chr7B 73.563 522 120 14 1504 2014 745277984 745278498 2.040000e-42 183.0
20 TraesCS7D01G545300 chr7B 75.649 308 61 10 1752 2049 748801655 748801352 1.240000e-29 141.0
21 TraesCS7D01G545300 chr7B 75.244 307 64 8 1752 2049 748391816 748391513 5.780000e-28 135.0
22 TraesCS7D01G545300 chr7B 72.707 458 99 19 1605 2049 747891267 747891711 2.690000e-26 130.0
23 TraesCS7D01G545300 chr1B 81.858 678 101 9 217 876 641605842 641605169 4.850000e-153 551.0
24 TraesCS7D01G545300 chr1A 81.378 682 101 7 217 876 557131056 557130379 1.760000e-147 532.0
25 TraesCS7D01G545300 chr1A 94.737 38 2 0 604 641 22668419 22668382 3.580000e-05 60.2
26 TraesCS7D01G545300 chrUn 75.206 1214 234 39 1144 2338 299036754 299035589 2.290000e-141 512.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G545300 chr7D 632442085 632445408 3323 True 6139 6139 100.000 1 3324 1 chr7D.!!$R1 3323
1 TraesCS7D01G545300 chr7D 632890836 632892649 1813 True 1522 1522 82.286 1334 3129 1 chr7D.!!$R2 1795
2 TraesCS7D01G545300 chr7D 632774577 632775443 866 False 784 784 83.481 1 876 1 chr7D.!!$F2 875
3 TraesCS7D01G545300 chr7A 734370502 734372638 2136 False 3092 3092 92.841 1116 3251 1 chr7A.!!$F2 2135
4 TraesCS7D01G545300 chr7A 734316067 734317896 1829 False 1465 1465 81.507 882 2714 1 chr7A.!!$F1 1832
5 TraesCS7D01G545300 chr7A 734707145 734708434 1289 False 1029 1029 81.653 1686 2961 1 chr7A.!!$F5 1275
6 TraesCS7D01G545300 chr7A 734888821 734889722 901 False 922 922 85.777 1 876 1 chr7A.!!$F6 875
7 TraesCS7D01G545300 chr7B 748608654 748609550 896 True 878 878 85.039 7 876 1 chr7B.!!$R3 869
8 TraesCS7D01G545300 chr7B 748876283 748877448 1165 True 512 512 75.206 1144 2338 1 chr7B.!!$R5 1194
9 TraesCS7D01G545300 chr1B 641605169 641605842 673 True 551 551 81.858 217 876 1 chr1B.!!$R1 659
10 TraesCS7D01G545300 chr1A 557130379 557131056 677 True 532 532 81.378 217 876 1 chr1A.!!$R2 659
11 TraesCS7D01G545300 chrUn 299035589 299036754 1165 True 512 512 75.206 1144 2338 1 chrUn.!!$R1 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 1030 0.037975 ATCTTCGGTTTGGCGTACGT 60.038 50.0 17.9 0.0 0.0 3.57 F
1080 1125 0.106116 AGCCTTCCCTACCGACCTAG 60.106 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2178 0.107945 CTCCTCTTCCCGAAGCCTTG 60.108 60.0 0.0 0.0 38.28 3.61 R
2700 2811 0.110056 GTGACTCAATTGCAGTGCGG 60.110 55.0 11.2 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.288366 TGATCAGACACAAGGACCCAAATA 59.712 41.667 0.00 0.00 0.00 1.40
160 171 2.992089 GGAATGCATCCGATGTCGT 58.008 52.632 10.10 1.69 38.79 4.34
169 181 0.242825 TCCGATGTCGTGTGGACTTC 59.757 55.000 1.44 0.00 46.24 3.01
184 198 6.010850 TGTGGACTTCATTACTCAGTAGACT 58.989 40.000 0.00 0.00 0.00 3.24
191 205 9.682465 ACTTCATTACTCAGTAGACTATGTACA 57.318 33.333 0.00 0.00 0.00 2.90
200 214 3.936372 AGACTATGTACACGTGTGCTT 57.064 42.857 31.94 27.94 0.00 3.91
214 228 3.240631 CGTGTGCTTGTGTGATACGATAG 59.759 47.826 0.00 0.00 46.19 2.08
247 272 2.766313 TCAAACACCACTCGATCAAGG 58.234 47.619 0.00 0.00 0.00 3.61
248 273 2.104111 TCAAACACCACTCGATCAAGGT 59.896 45.455 0.00 0.00 33.91 3.50
249 274 2.878406 CAAACACCACTCGATCAAGGTT 59.122 45.455 0.00 0.00 30.44 3.50
289 314 2.105477 ACATACCCTATCTGCTTGGCTG 59.895 50.000 0.00 0.00 0.00 4.85
302 327 0.327924 TTGGCTGGCTTGCTAGCTAA 59.672 50.000 25.48 23.42 46.90 3.09
319 344 5.635417 AGCTAAGAGAAAACTTTCATGGC 57.365 39.130 5.07 4.52 39.61 4.40
353 378 2.290260 TGGCAGGTCGATCTCAAACAAT 60.290 45.455 0.00 0.00 0.00 2.71
362 387 2.673775 TCTCAAACAATGGGGAGCAA 57.326 45.000 0.00 0.00 0.00 3.91
374 399 1.475930 GGGGAGCAAGAGCCATACTTC 60.476 57.143 0.00 0.00 43.56 3.01
431 460 1.135603 ACGCAAGCTCGATTACGTACA 60.136 47.619 1.33 0.00 45.62 2.90
443 472 5.579119 TCGATTACGTACATGCAATTCAACT 59.421 36.000 0.00 0.00 40.69 3.16
445 474 7.436970 TCGATTACGTACATGCAATTCAACTAT 59.563 33.333 0.00 0.00 40.69 2.12
472 501 3.201290 CGTTCCTCTTTCCAGATCCATG 58.799 50.000 0.00 0.00 0.00 3.66
475 504 4.494091 TCCTCTTTCCAGATCCATGAAC 57.506 45.455 0.00 0.00 0.00 3.18
480 509 3.634397 TTCCAGATCCATGAACCTCAC 57.366 47.619 0.00 0.00 0.00 3.51
481 510 1.482182 TCCAGATCCATGAACCTCACG 59.518 52.381 0.00 0.00 0.00 4.35
532 561 0.687920 TCTGGGTACAATGACCGCAA 59.312 50.000 0.00 0.00 40.76 4.85
537 566 1.467342 GGTACAATGACCGCAACTTCC 59.533 52.381 0.00 0.00 0.00 3.46
543 572 1.079057 GACCGCAACTTCCCCTCTC 60.079 63.158 0.00 0.00 0.00 3.20
594 623 2.127232 GCACCACCACCACTTGCTT 61.127 57.895 0.00 0.00 0.00 3.91
599 628 0.951558 CACCACCACTTGCTTGTACC 59.048 55.000 0.00 0.00 0.00 3.34
608 637 0.402504 TTGCTTGTACCGTGGGGATT 59.597 50.000 0.00 0.00 36.97 3.01
653 682 6.896860 TGAACCCATCTATGGTGATCAATTTT 59.103 34.615 8.16 0.00 46.65 1.82
668 713 7.753132 GTGATCAATTTTAATACGTTGCCAAGA 59.247 33.333 0.00 0.00 0.00 3.02
670 715 6.090129 TCAATTTTAATACGTTGCCAAGAGC 58.910 36.000 0.00 0.00 44.14 4.09
723 768 1.550130 TTCACCAGTCCCGACATCCC 61.550 60.000 0.00 0.00 0.00 3.85
728 773 2.758737 GTCCCGACATCCCCGTCT 60.759 66.667 0.00 0.00 33.54 4.18
816 861 1.369692 CGGGTTGGCTGTAGTCACA 59.630 57.895 0.00 0.00 0.00 3.58
876 921 3.155167 GAGAGGCCCCCAGGTACG 61.155 72.222 0.00 0.00 34.57 3.67
877 922 3.978410 GAGAGGCCCCCAGGTACGT 62.978 68.421 0.00 0.00 34.57 3.57
878 923 2.042639 GAGGCCCCCAGGTACGTA 60.043 66.667 0.00 0.00 34.57 3.57
879 924 2.364710 AGGCCCCCAGGTACGTAC 60.365 66.667 17.56 17.56 34.57 3.67
880 925 2.684655 GGCCCCCAGGTACGTACA 60.685 66.667 26.02 0.00 34.57 2.90
895 940 1.201877 CGTACATCGTTTTCTTGGCCG 60.202 52.381 0.00 0.00 34.52 6.13
897 942 1.169661 ACATCGTTTTCTTGGCCGCA 61.170 50.000 0.00 0.00 0.00 5.69
899 944 1.400142 CATCGTTTTCTTGGCCGCATA 59.600 47.619 0.00 0.00 0.00 3.14
909 954 1.142314 GGCCGCATAGTACGTTGGA 59.858 57.895 0.00 0.00 0.00 3.53
911 956 0.648958 GCCGCATAGTACGTTGGAAC 59.351 55.000 0.00 0.00 0.00 3.62
913 958 1.924524 CCGCATAGTACGTTGGAACTG 59.075 52.381 0.00 0.00 0.00 3.16
918 963 4.270325 GCATAGTACGTTGGAACTGGATTC 59.730 45.833 0.00 0.00 36.48 2.52
919 964 2.955614 AGTACGTTGGAACTGGATTCG 58.044 47.619 0.00 0.00 38.31 3.34
920 965 1.997606 GTACGTTGGAACTGGATTCGG 59.002 52.381 0.00 0.00 38.31 4.30
925 970 1.646912 TGGAACTGGATTCGGGTACA 58.353 50.000 0.00 0.00 38.31 2.90
933 978 1.270147 GGATTCGGGTACATTCTCGGG 60.270 57.143 0.00 0.00 0.00 5.14
955 1000 0.803768 CGATGCGGTCAAGGACTCTG 60.804 60.000 0.00 0.00 32.47 3.35
960 1005 0.679505 CGGTCAAGGACTCTGTTCCA 59.320 55.000 0.00 0.00 38.25 3.53
964 1009 3.323979 GGTCAAGGACTCTGTTCCAAGTA 59.676 47.826 0.00 0.00 38.25 2.24
965 1010 4.020128 GGTCAAGGACTCTGTTCCAAGTAT 60.020 45.833 0.00 0.00 38.25 2.12
966 1011 5.187186 GGTCAAGGACTCTGTTCCAAGTATA 59.813 44.000 0.00 0.00 38.25 1.47
970 1015 7.400339 TCAAGGACTCTGTTCCAAGTATATCTT 59.600 37.037 0.00 0.00 38.25 2.40
982 1027 4.924305 AGTATATCTTCGGTTTGGCGTA 57.076 40.909 0.00 0.00 0.00 4.42
984 1029 1.912001 TATCTTCGGTTTGGCGTACG 58.088 50.000 11.84 11.84 0.00 3.67
985 1030 0.037975 ATCTTCGGTTTGGCGTACGT 60.038 50.000 17.90 0.00 0.00 3.57
986 1031 0.940519 TCTTCGGTTTGGCGTACGTG 60.941 55.000 17.90 0.00 0.00 4.49
987 1032 2.488852 CTTCGGTTTGGCGTACGTGC 62.489 60.000 17.90 0.00 0.00 5.34
988 1033 3.339464 CGGTTTGGCGTACGTGCA 61.339 61.111 17.90 0.00 36.28 4.57
990 1035 1.577421 GGTTTGGCGTACGTGCAAT 59.423 52.632 17.90 0.00 36.28 3.56
991 1036 0.797542 GGTTTGGCGTACGTGCAATA 59.202 50.000 17.90 0.00 36.28 1.90
992 1037 1.464521 GGTTTGGCGTACGTGCAATAC 60.465 52.381 17.90 7.81 36.28 1.89
993 1038 1.461897 GTTTGGCGTACGTGCAATACT 59.538 47.619 17.90 0.00 36.28 2.12
994 1039 1.352114 TTGGCGTACGTGCAATACTC 58.648 50.000 17.90 0.00 36.28 2.59
995 1040 0.244178 TGGCGTACGTGCAATACTCA 59.756 50.000 17.90 4.00 36.28 3.41
996 1041 1.134936 TGGCGTACGTGCAATACTCAT 60.135 47.619 17.90 0.00 36.28 2.90
1015 1060 1.065358 TAACAGAGTTTACGCTGCGC 58.935 50.000 23.51 0.00 45.78 6.09
1016 1061 0.878523 AACAGAGTTTACGCTGCGCA 60.879 50.000 23.51 10.98 45.78 6.09
1017 1062 0.670546 ACAGAGTTTACGCTGCGCAT 60.671 50.000 23.51 6.13 45.78 4.73
1024 1069 2.621371 TTACGCTGCGCATCCGATCA 62.621 55.000 29.33 15.23 36.29 2.92
1028 1073 1.431488 GCTGCGCATCCGATCAGAAA 61.431 55.000 12.24 0.00 36.29 2.52
1030 1075 0.390998 TGCGCATCCGATCAGAAACA 60.391 50.000 5.66 0.00 36.29 2.83
1033 1078 0.659957 GCATCCGATCAGAAACAGCC 59.340 55.000 0.00 0.00 0.00 4.85
1036 1081 1.266178 TCCGATCAGAAACAGCCTCA 58.734 50.000 0.00 0.00 0.00 3.86
1037 1082 1.833630 TCCGATCAGAAACAGCCTCAT 59.166 47.619 0.00 0.00 0.00 2.90
1042 1087 1.205655 TCAGAAACAGCCTCATCGGAG 59.794 52.381 0.00 0.00 41.02 4.63
1052 1097 1.078637 TCATCGGAGGAGACGACGT 60.079 57.895 0.00 0.00 43.78 4.34
1053 1098 1.062685 CATCGGAGGAGACGACGTG 59.937 63.158 4.58 0.00 43.78 4.49
1054 1099 2.762234 ATCGGAGGAGACGACGTGC 61.762 63.158 4.58 0.00 43.78 5.34
1055 1100 4.477975 CGGAGGAGACGACGTGCC 62.478 72.222 4.58 6.81 0.00 5.01
1062 1107 3.470567 GACGACGTGCCGAGCAAG 61.471 66.667 4.58 9.49 41.47 4.01
1070 1115 4.416738 GCCGAGCAAGCCTTCCCT 62.417 66.667 0.00 0.00 0.00 4.20
1071 1116 3.031417 GCCGAGCAAGCCTTCCCTA 62.031 63.158 0.00 0.00 0.00 3.53
1072 1117 1.153349 CCGAGCAAGCCTTCCCTAC 60.153 63.158 0.00 0.00 0.00 3.18
1073 1118 1.153349 CGAGCAAGCCTTCCCTACC 60.153 63.158 0.00 0.00 0.00 3.18
1074 1119 1.153349 GAGCAAGCCTTCCCTACCG 60.153 63.158 0.00 0.00 0.00 4.02
1076 1121 1.449778 GCAAGCCTTCCCTACCGAC 60.450 63.158 0.00 0.00 0.00 4.79
1077 1122 1.221021 CAAGCCTTCCCTACCGACC 59.779 63.158 0.00 0.00 0.00 4.79
1078 1123 1.080538 AAGCCTTCCCTACCGACCT 59.919 57.895 0.00 0.00 0.00 3.85
1079 1124 0.337428 AAGCCTTCCCTACCGACCTA 59.663 55.000 0.00 0.00 0.00 3.08
1080 1125 0.106116 AGCCTTCCCTACCGACCTAG 60.106 60.000 0.00 0.00 0.00 3.02
1081 1126 1.746322 GCCTTCCCTACCGACCTAGC 61.746 65.000 0.00 0.00 0.00 3.42
1082 1127 0.396695 CCTTCCCTACCGACCTAGCA 60.397 60.000 0.00 0.00 0.00 3.49
1085 1130 1.188863 TCCCTACCGACCTAGCAAAC 58.811 55.000 0.00 0.00 0.00 2.93
1087 1132 0.179119 CCTACCGACCTAGCAAACCG 60.179 60.000 0.00 0.00 0.00 4.44
1101 1146 0.511221 AAACCGCAAACACGATCGAG 59.489 50.000 24.34 17.42 34.06 4.04
1102 1147 0.599204 AACCGCAAACACGATCGAGT 60.599 50.000 24.34 18.22 34.06 4.18
1103 1148 0.599204 ACCGCAAACACGATCGAGTT 60.599 50.000 24.34 23.39 34.06 3.01
1109 1168 3.722082 GCAAACACGATCGAGTTGATGAC 60.722 47.826 27.50 16.01 37.47 3.06
1111 1170 0.567968 CACGATCGAGTTGATGACGC 59.432 55.000 24.34 0.00 37.47 5.19
1112 1171 0.170339 ACGATCGAGTTGATGACGCA 59.830 50.000 24.34 0.00 37.47 5.24
1119 1178 2.745492 TTGATGACGCATGCGCCA 60.745 55.556 38.15 34.48 44.19 5.69
1124 1183 3.558411 GACGCATGCGCCAGAGTC 61.558 66.667 38.15 23.44 44.19 3.36
1125 1184 4.377708 ACGCATGCGCCAGAGTCA 62.378 61.111 38.15 0.00 44.19 3.41
1128 1187 1.523258 GCATGCGCCAGAGTCAGAT 60.523 57.895 4.18 0.00 0.00 2.90
1140 1199 2.120232 GAGTCAGATATTGCGACACCG 58.880 52.381 0.00 0.00 39.16 4.94
1146 1205 0.804544 ATATTGCGACACCGTGGACG 60.805 55.000 13.44 13.44 38.24 4.79
1162 1221 2.902846 CGCTCCCGACCGATCTCT 60.903 66.667 0.00 0.00 36.29 3.10
1207 1266 3.071837 TACCCACGCTCATCCGCA 61.072 61.111 0.00 0.00 0.00 5.69
1239 1298 3.706373 AAGCACCTCCGCCGTGAT 61.706 61.111 0.00 0.00 32.77 3.06
1262 1321 4.776322 CAGCCCGCCGTTCATCCA 62.776 66.667 0.00 0.00 0.00 3.41
1306 1365 2.060383 AGCATCCTCGCCTACTGCA 61.060 57.895 0.00 0.00 41.33 4.41
1312 1374 2.920384 TCGCCTACTGCACCACCA 60.920 61.111 0.00 0.00 41.33 4.17
1321 1383 1.300971 CTGCACCACCAATGACGAGG 61.301 60.000 0.00 0.00 0.00 4.63
1654 1722 1.664659 CCTTCATGCTGCTCTTCTTCG 59.335 52.381 0.00 0.00 0.00 3.79
1655 1723 2.344950 CTTCATGCTGCTCTTCTTCGT 58.655 47.619 0.00 0.00 0.00 3.85
1656 1724 2.001812 TCATGCTGCTCTTCTTCGTC 57.998 50.000 0.00 0.00 0.00 4.20
1665 1733 5.055642 TGCTCTTCTTCGTCGATCTAAAA 57.944 39.130 0.00 0.00 0.00 1.52
1929 1997 2.551912 CCACTTGGCAACGTCACCC 61.552 63.158 0.00 0.00 42.51 4.61
1967 2035 3.931907 ACTGCTTTGCATAGATGGGTA 57.068 42.857 8.49 0.00 38.13 3.69
2110 2178 2.415512 GGCAATGTAGTCGTTCAGTTCC 59.584 50.000 0.00 0.00 0.00 3.62
2117 2185 1.141053 AGTCGTTCAGTTCCAAGGCTT 59.859 47.619 0.00 0.00 0.00 4.35
2133 2201 2.036731 TTCGGGAAGAGGAGCGGA 59.963 61.111 0.00 0.00 0.00 5.54
2167 2235 3.826729 GCTGAAGGTACCCAAGAATGTTT 59.173 43.478 8.74 0.00 0.00 2.83
2263 2340 6.649557 CGACCTATCATATCACCTAAAAACCC 59.350 42.308 0.00 0.00 0.00 4.11
2382 2477 9.315363 ACTTACCAAAATTTATGGGATGTACAA 57.685 29.630 17.91 0.00 42.48 2.41
2384 2479 7.546250 ACCAAAATTTATGGGATGTACAACA 57.454 32.000 17.91 0.00 42.48 3.33
2402 2499 8.676401 TGTACAACATATACATGTACGTGTACT 58.324 33.333 26.26 18.08 45.97 2.73
2405 2502 9.507280 ACAACATATACATGTACGTGTACTTAC 57.493 33.333 26.26 0.00 44.83 2.34
2535 2635 4.527816 CCCATCCTTTTCAAGTTTCATGGA 59.472 41.667 0.00 0.00 32.72 3.41
2599 2706 2.238942 ATGTGCAAAGACGAGACACA 57.761 45.000 0.00 0.00 44.56 3.72
2602 2709 2.744741 TGTGCAAAGACGAGACACAAAA 59.255 40.909 0.00 0.00 38.24 2.44
2603 2710 3.376859 TGTGCAAAGACGAGACACAAAAT 59.623 39.130 0.00 0.00 38.24 1.82
2700 2811 5.540337 TCCTACTCCATATTGTCATCAGGTC 59.460 44.000 0.00 0.00 0.00 3.85
2720 2831 0.587768 CGCACTGCAATTGAGTCACA 59.412 50.000 10.34 0.00 0.00 3.58
2757 2876 3.965379 TGGAGTTTGACTTGCCGTATA 57.035 42.857 0.00 0.00 0.00 1.47
2824 2944 1.836604 GCCTTTGGCCCTGGTGAAA 60.837 57.895 0.00 0.00 44.06 2.69
2855 2978 7.365117 CCCTCCATCCCAAGTATATCATAGTTC 60.365 44.444 0.00 0.00 0.00 3.01
2891 3014 2.298411 TTTTAGGACGGATGGCGTAC 57.702 50.000 0.00 0.00 0.00 3.67
3000 3137 0.679002 TACTCCTGCCGCGTTAGACT 60.679 55.000 4.92 0.00 0.00 3.24
3010 3147 3.791175 CCGCGTTAGACTAACAAACAAC 58.209 45.455 22.10 6.00 38.57 3.32
3032 3169 0.459078 CACATGTTGTGGGTGTTGCA 59.541 50.000 0.00 0.00 44.27 4.08
3042 3179 0.321671 GGGTGTTGCACTAGCTCAGA 59.678 55.000 0.00 0.00 42.74 3.27
3064 3201 2.108168 AGCTGGTAGATCAGGCGTTAA 58.892 47.619 0.00 0.00 35.43 2.01
3065 3202 2.700897 AGCTGGTAGATCAGGCGTTAAT 59.299 45.455 0.00 0.00 35.43 1.40
3071 3208 4.745620 GGTAGATCAGGCGTTAATGTCTTC 59.254 45.833 0.00 0.00 0.00 2.87
3096 3233 7.996644 TCAGTTCAGTAATGAAACCTTAAACCT 59.003 33.333 7.26 0.00 0.00 3.50
3097 3234 8.076178 CAGTTCAGTAATGAAACCTTAAACCTG 58.924 37.037 7.26 3.89 0.00 4.00
3112 3249 4.965119 AAACCTGAAGTGTTGAGTTCAC 57.035 40.909 0.00 0.00 36.73 3.18
3131 3268 3.456644 TCACCCTTTCAACAGAGTTGGTA 59.543 43.478 9.72 0.00 0.00 3.25
3149 3286 2.237392 GGTATAGCCAAGGGATAGCTGG 59.763 54.545 0.00 0.00 37.45 4.85
3155 3292 1.561542 CCAAGGGATAGCTGGAACTGT 59.438 52.381 0.00 0.00 31.38 3.55
3156 3293 2.771943 CCAAGGGATAGCTGGAACTGTA 59.228 50.000 0.00 0.00 31.38 2.74
3164 3301 5.304614 GGATAGCTGGAACTGTAGGATAACA 59.695 44.000 0.00 0.00 0.00 2.41
3167 3304 5.675538 AGCTGGAACTGTAGGATAACATTC 58.324 41.667 0.00 0.00 0.00 2.67
3188 3325 3.893200 TCAAATCATGAGGATCCAATGGC 59.107 43.478 21.19 5.04 34.28 4.40
3194 3331 0.776176 GAGGATCCAATGGCCCATCT 59.224 55.000 15.82 0.00 0.00 2.90
3211 3351 1.741401 CTTGGATCTTGCACGCCGA 60.741 57.895 0.00 0.00 0.00 5.54
3222 3362 2.958016 ACGCCGACACACGTCAAC 60.958 61.111 0.00 0.00 42.74 3.18
3223 3363 2.957489 CGCCGACACACGTCAACA 60.957 61.111 0.00 0.00 42.74 3.33
3224 3364 2.518312 CGCCGACACACGTCAACAA 61.518 57.895 0.00 0.00 42.74 2.83
3253 3393 9.597170 ACTTTCTTTTCTTTCTTAGTTAGTCGT 57.403 29.630 0.00 0.00 0.00 4.34
3261 3401 9.674824 TTCTTTCTTAGTTAGTCGTTTAGTCTG 57.325 33.333 0.00 0.00 0.00 3.51
3262 3402 8.844244 TCTTTCTTAGTTAGTCGTTTAGTCTGT 58.156 33.333 0.00 0.00 0.00 3.41
3263 3403 9.460906 CTTTCTTAGTTAGTCGTTTAGTCTGTT 57.539 33.333 0.00 0.00 0.00 3.16
3265 3405 9.884465 TTCTTAGTTAGTCGTTTAGTCTGTTAC 57.116 33.333 0.00 0.00 0.00 2.50
3266 3406 9.277783 TCTTAGTTAGTCGTTTAGTCTGTTACT 57.722 33.333 0.00 0.00 42.62 2.24
3267 3407 9.890352 CTTAGTTAGTCGTTTAGTCTGTTACTT 57.110 33.333 0.00 0.00 39.80 2.24
3268 3408 9.884465 TTAGTTAGTCGTTTAGTCTGTTACTTC 57.116 33.333 0.00 0.00 39.80 3.01
3269 3409 7.934457 AGTTAGTCGTTTAGTCTGTTACTTCA 58.066 34.615 0.00 0.00 39.80 3.02
3270 3410 8.074972 AGTTAGTCGTTTAGTCTGTTACTTCAG 58.925 37.037 0.00 0.00 39.80 3.02
3271 3411 6.630444 AGTCGTTTAGTCTGTTACTTCAGA 57.370 37.500 0.00 0.00 41.40 3.27
3323 3463 9.601217 ACACATATTAATTTAGCTCGTTTCTCT 57.399 29.630 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.039084 GGTCCTTGTGTCTGATCAGGTT 59.961 50.000 22.42 0.00 0.00 3.50
22 23 3.344515 GTCCTATTTGGGTCCTTGTGTC 58.655 50.000 0.00 0.00 36.20 3.67
39 40 0.674534 GATCATACCGAAGCCGTCCT 59.325 55.000 0.00 0.00 0.00 3.85
160 171 6.010850 AGTCTACTGAGTAATGAAGTCCACA 58.989 40.000 0.00 0.00 0.00 4.17
169 181 7.851472 CACGTGTACATAGTCTACTGAGTAATG 59.149 40.741 7.58 0.00 32.48 1.90
184 198 2.797719 CACACAAGCACACGTGTACATA 59.202 45.455 22.90 0.00 44.34 2.29
191 205 1.136690 CGTATCACACAAGCACACGT 58.863 50.000 0.00 0.00 0.00 4.49
200 214 7.761038 AGTCCATATTCTATCGTATCACACA 57.239 36.000 0.00 0.00 0.00 3.72
214 228 7.254455 CGAGTGGTGTTTGATTAGTCCATATTC 60.254 40.741 0.00 0.00 0.00 1.75
231 255 1.416401 ACAACCTTGATCGAGTGGTGT 59.584 47.619 13.49 13.49 32.53 4.16
249 274 8.958506 GGGTATGTTACAAATGTATTTACCACA 58.041 33.333 18.65 10.48 34.62 4.17
278 303 2.128290 TAGCAAGCCAGCCAAGCAGA 62.128 55.000 0.00 0.00 34.23 4.26
281 306 3.061260 GCTAGCAAGCCAGCCAAGC 62.061 63.158 10.63 7.03 43.40 4.01
289 314 6.621812 GAAAGTTTTCTCTTAGCTAGCAAGCC 60.622 42.308 18.83 3.88 40.61 4.35
302 327 5.474876 CCTACAAGCCATGAAAGTTTTCTCT 59.525 40.000 0.00 0.00 38.02 3.10
319 344 1.556911 ACCTGCCATCTCACCTACAAG 59.443 52.381 0.00 0.00 0.00 3.16
353 378 0.621571 AGTATGGCTCTTGCTCCCCA 60.622 55.000 0.00 0.00 39.59 4.96
431 460 4.517285 ACGGAGACATAGTTGAATTGCAT 58.483 39.130 0.00 0.00 0.00 3.96
443 472 3.437213 TGGAAAGAGGAACGGAGACATA 58.563 45.455 0.00 0.00 0.00 2.29
445 474 1.618837 CTGGAAAGAGGAACGGAGACA 59.381 52.381 0.00 0.00 0.00 3.41
472 501 4.731193 GCTCTGATGTACTACGTGAGGTTC 60.731 50.000 0.00 0.00 0.00 3.62
475 504 2.033550 GGCTCTGATGTACTACGTGAGG 59.966 54.545 0.00 0.00 0.00 3.86
480 509 2.025155 AGGTGGCTCTGATGTACTACG 58.975 52.381 0.00 0.00 0.00 3.51
481 510 3.952323 TGTAGGTGGCTCTGATGTACTAC 59.048 47.826 0.00 0.00 0.00 2.73
532 561 2.507471 GTGATTGATGGAGAGGGGAAGT 59.493 50.000 0.00 0.00 0.00 3.01
537 566 1.842562 AGGTGTGATTGATGGAGAGGG 59.157 52.381 0.00 0.00 0.00 4.30
543 572 1.747355 GCTGGAAGGTGTGATTGATGG 59.253 52.381 0.00 0.00 0.00 3.51
594 623 1.065998 GCTACAAATCCCCACGGTACA 60.066 52.381 0.00 0.00 0.00 2.90
599 628 2.477880 GTGGCTACAAATCCCCACG 58.522 57.895 0.00 0.00 38.45 4.94
641 670 6.326375 TGGCAACGTATTAAAATTGATCACC 58.674 36.000 0.00 0.00 42.51 4.02
723 768 3.491619 CCTCACCTATGATGTGAAGACGG 60.492 52.174 0.00 0.00 41.85 4.79
748 793 4.322385 GCGGACCACGGCAAACAC 62.322 66.667 0.00 0.00 44.51 3.32
816 861 0.833834 CTCCCTGTGGTGGTCAGTCT 60.834 60.000 0.00 0.00 0.00 3.24
876 921 1.465187 GCGGCCAAGAAAACGATGTAC 60.465 52.381 2.24 0.00 0.00 2.90
877 922 0.800012 GCGGCCAAGAAAACGATGTA 59.200 50.000 2.24 0.00 0.00 2.29
878 923 1.169661 TGCGGCCAAGAAAACGATGT 61.170 50.000 2.24 0.00 0.00 3.06
879 924 0.171007 ATGCGGCCAAGAAAACGATG 59.829 50.000 2.24 0.00 0.00 3.84
880 925 1.670811 CTATGCGGCCAAGAAAACGAT 59.329 47.619 2.24 0.00 0.00 3.73
887 932 0.533491 AACGTACTATGCGGCCAAGA 59.467 50.000 2.24 0.00 0.00 3.02
888 933 0.650512 CAACGTACTATGCGGCCAAG 59.349 55.000 2.24 0.00 0.00 3.61
889 934 0.741574 CCAACGTACTATGCGGCCAA 60.742 55.000 2.24 0.00 0.00 4.52
895 940 3.241067 TCCAGTTCCAACGTACTATGC 57.759 47.619 0.00 0.00 0.00 3.14
897 942 4.441079 CCGAATCCAGTTCCAACGTACTAT 60.441 45.833 0.00 0.00 33.04 2.12
899 944 2.353406 CCGAATCCAGTTCCAACGTACT 60.353 50.000 0.00 0.00 33.04 2.73
909 954 3.430374 CGAGAATGTACCCGAATCCAGTT 60.430 47.826 0.00 0.00 0.00 3.16
911 956 2.545952 CCGAGAATGTACCCGAATCCAG 60.546 54.545 0.00 0.00 0.00 3.86
913 958 1.270147 CCCGAGAATGTACCCGAATCC 60.270 57.143 0.00 0.00 0.00 3.01
918 963 1.440476 GGACCCGAGAATGTACCCG 59.560 63.158 0.00 0.00 0.00 5.28
919 964 1.039233 TCGGACCCGAGAATGTACCC 61.039 60.000 7.11 0.00 44.01 3.69
920 965 2.496942 TCGGACCCGAGAATGTACC 58.503 57.895 7.11 0.00 44.01 3.34
945 990 7.118496 AGATATACTTGGAACAGAGTCCTTG 57.882 40.000 0.00 0.00 42.39 3.61
946 991 7.416890 CGAAGATATACTTGGAACAGAGTCCTT 60.417 40.741 0.00 0.00 42.39 3.36
955 1000 5.220796 GCCAAACCGAAGATATACTTGGAAC 60.221 44.000 2.20 0.00 39.13 3.62
960 1005 4.133013 ACGCCAAACCGAAGATATACTT 57.867 40.909 0.00 0.00 42.03 2.24
964 1009 2.159198 ACGTACGCCAAACCGAAGATAT 60.159 45.455 16.72 0.00 0.00 1.63
965 1010 1.202114 ACGTACGCCAAACCGAAGATA 59.798 47.619 16.72 0.00 0.00 1.98
966 1011 0.037975 ACGTACGCCAAACCGAAGAT 60.038 50.000 16.72 0.00 0.00 2.40
970 1015 3.037249 GCACGTACGCCAAACCGA 61.037 61.111 16.72 0.00 0.00 4.69
982 1027 5.073311 ACTCTGTTATGAGTATTGCACGT 57.927 39.130 0.00 0.00 44.53 4.49
984 1029 7.391786 CGTAAACTCTGTTATGAGTATTGCAC 58.608 38.462 0.00 0.00 45.49 4.57
985 1030 6.035650 GCGTAAACTCTGTTATGAGTATTGCA 59.964 38.462 0.00 0.00 45.49 4.08
986 1031 6.255887 AGCGTAAACTCTGTTATGAGTATTGC 59.744 38.462 0.00 0.00 45.49 3.56
987 1032 7.613146 CAGCGTAAACTCTGTTATGAGTATTG 58.387 38.462 0.00 0.00 45.49 1.90
988 1033 6.255887 GCAGCGTAAACTCTGTTATGAGTATT 59.744 38.462 2.39 0.00 45.49 1.89
990 1035 5.100259 GCAGCGTAAACTCTGTTATGAGTA 58.900 41.667 2.39 0.00 45.49 2.59
992 1037 3.000674 CGCAGCGTAAACTCTGTTATGAG 60.001 47.826 6.65 0.00 39.78 2.90
993 1038 2.921121 CGCAGCGTAAACTCTGTTATGA 59.079 45.455 6.65 0.00 31.71 2.15
994 1039 3.289702 CGCAGCGTAAACTCTGTTATG 57.710 47.619 6.65 0.00 31.71 1.90
1015 1060 2.208431 GAGGCTGTTTCTGATCGGATG 58.792 52.381 4.74 0.00 0.00 3.51
1016 1061 1.833630 TGAGGCTGTTTCTGATCGGAT 59.166 47.619 4.74 0.00 0.00 4.18
1017 1062 1.266178 TGAGGCTGTTTCTGATCGGA 58.734 50.000 0.00 0.00 0.00 4.55
1033 1078 1.090625 ACGTCGTCTCCTCCGATGAG 61.091 60.000 8.80 0.00 42.46 2.90
1036 1081 2.762234 GCACGTCGTCTCCTCCGAT 61.762 63.158 0.00 0.00 36.62 4.18
1037 1082 3.429141 GCACGTCGTCTCCTCCGA 61.429 66.667 0.00 0.00 0.00 4.55
1052 1097 4.722700 GGGAAGGCTTGCTCGGCA 62.723 66.667 18.47 0.00 36.47 5.69
1053 1098 3.031417 TAGGGAAGGCTTGCTCGGC 62.031 63.158 18.47 1.66 0.00 5.54
1054 1099 1.153349 GTAGGGAAGGCTTGCTCGG 60.153 63.158 18.47 0.00 0.00 4.63
1055 1100 1.153349 GGTAGGGAAGGCTTGCTCG 60.153 63.158 18.47 0.00 0.00 5.03
1062 1107 1.746322 GCTAGGTCGGTAGGGAAGGC 61.746 65.000 0.00 0.00 0.00 4.35
1065 1110 1.551883 GTTTGCTAGGTCGGTAGGGAA 59.448 52.381 0.00 0.00 0.00 3.97
1070 1115 1.216178 GCGGTTTGCTAGGTCGGTA 59.784 57.895 0.00 0.00 41.73 4.02
1071 1116 2.047560 GCGGTTTGCTAGGTCGGT 60.048 61.111 0.00 0.00 41.73 4.69
1072 1117 1.231958 TTTGCGGTTTGCTAGGTCGG 61.232 55.000 0.00 0.00 46.63 4.79
1073 1118 0.110373 GTTTGCGGTTTGCTAGGTCG 60.110 55.000 0.00 0.00 46.63 4.79
1074 1119 0.948678 TGTTTGCGGTTTGCTAGGTC 59.051 50.000 0.00 0.00 46.63 3.85
1076 1121 0.385473 CGTGTTTGCGGTTTGCTAGG 60.385 55.000 0.00 0.00 46.63 3.02
1077 1122 0.584396 TCGTGTTTGCGGTTTGCTAG 59.416 50.000 0.00 0.00 46.63 3.42
1078 1123 1.195900 GATCGTGTTTGCGGTTTGCTA 59.804 47.619 0.00 0.00 46.63 3.49
1079 1124 0.040425 GATCGTGTTTGCGGTTTGCT 60.040 50.000 0.00 0.00 46.63 3.91
1080 1125 1.327292 CGATCGTGTTTGCGGTTTGC 61.327 55.000 7.03 0.00 46.70 3.68
1081 1126 0.233590 TCGATCGTGTTTGCGGTTTG 59.766 50.000 15.94 0.00 0.00 2.93
1082 1127 0.511221 CTCGATCGTGTTTGCGGTTT 59.489 50.000 15.94 0.00 0.00 3.27
1085 1130 0.179250 CAACTCGATCGTGTTTGCGG 60.179 55.000 27.61 15.65 30.65 5.69
1087 1132 2.411748 TCATCAACTCGATCGTGTTTGC 59.588 45.455 27.61 0.00 30.65 3.68
1101 1146 2.277501 GGCGCATGCGTCATCAAC 60.278 61.111 37.51 20.18 44.22 3.18
1109 1168 3.561213 CTGACTCTGGCGCATGCG 61.561 66.667 34.83 34.83 44.10 4.73
1111 1170 2.452295 ATATCTGACTCTGGCGCATG 57.548 50.000 10.83 0.05 0.00 4.06
1112 1171 2.763933 CAATATCTGACTCTGGCGCAT 58.236 47.619 10.83 0.00 0.00 4.73
1119 1178 2.223595 CGGTGTCGCAATATCTGACTCT 60.224 50.000 4.29 0.00 33.81 3.24
1124 1183 0.930310 CCACGGTGTCGCAATATCTG 59.070 55.000 7.45 0.00 40.63 2.90
1125 1184 0.821517 TCCACGGTGTCGCAATATCT 59.178 50.000 7.45 0.00 40.63 1.98
1128 1187 1.444724 CGTCCACGGTGTCGCAATA 60.445 57.895 7.45 0.00 40.63 1.90
1146 1205 1.066587 CAAGAGATCGGTCGGGAGC 59.933 63.158 0.00 0.00 0.00 4.70
1162 1221 1.291184 CGTGCCACGATCTCAAGCAA 61.291 55.000 12.85 0.00 46.05 3.91
1207 1266 4.749310 CTTGGAGACTGCGGCGCT 62.749 66.667 33.26 14.35 0.00 5.92
1239 1298 2.762459 AACGGCGGGCTGAGGATA 60.762 61.111 13.24 0.00 0.00 2.59
1275 1334 1.751927 GATGCTGGGAGCCACTTGG 60.752 63.158 0.00 0.00 41.51 3.61
1306 1365 0.036306 GGTTCCTCGTCATTGGTGGT 59.964 55.000 0.00 0.00 0.00 4.16
1312 1374 1.978580 AGTCAAGGGTTCCTCGTCATT 59.021 47.619 0.00 0.00 30.89 2.57
1321 1383 1.056660 TGGACCAGAGTCAAGGGTTC 58.943 55.000 6.59 3.78 45.48 3.62
1654 1722 7.553881 TGATTTTCCATCCTTTTAGATCGAC 57.446 36.000 0.00 0.00 0.00 4.20
1655 1723 8.574251 TTTGATTTTCCATCCTTTTAGATCGA 57.426 30.769 0.00 0.00 0.00 3.59
1656 1724 8.462016 ACTTTGATTTTCCATCCTTTTAGATCG 58.538 33.333 0.00 0.00 0.00 3.69
1665 1733 5.127682 GGCATGTACTTTGATTTTCCATCCT 59.872 40.000 0.00 0.00 0.00 3.24
1863 1931 2.918934 TGGAAGATTCACCCATCCAGAA 59.081 45.455 0.00 0.00 35.33 3.02
1929 1997 4.396166 AGCAGTTTCAATAGGTTTCCATCG 59.604 41.667 0.00 0.00 0.00 3.84
1967 2035 5.046304 AGTTGTAGCCACACTGATATCTTGT 60.046 40.000 3.98 4.62 33.30 3.16
2110 2178 0.107945 CTCCTCTTCCCGAAGCCTTG 60.108 60.000 0.00 0.00 38.28 3.61
2117 2185 2.440430 CTCCGCTCCTCTTCCCGA 60.440 66.667 0.00 0.00 0.00 5.14
2133 2201 1.301244 CTTCAGCAGCACCACGTCT 60.301 57.895 0.00 0.00 0.00 4.18
2167 2235 6.650807 GTCTCCAAATCAAGAACTACACATGA 59.349 38.462 0.00 0.00 0.00 3.07
2346 2440 8.879759 CATAAATTTTGGTAAGTCTCTTAGCGA 58.120 33.333 0.00 8.67 0.00 4.93
2397 2494 7.266400 TGTATGTTGTGAGTTGTGTAAGTACA 58.734 34.615 0.00 0.00 0.00 2.90
2398 2495 7.703298 TGTATGTTGTGAGTTGTGTAAGTAC 57.297 36.000 0.00 0.00 0.00 2.73
2399 2496 8.769891 CATTGTATGTTGTGAGTTGTGTAAGTA 58.230 33.333 0.00 0.00 0.00 2.24
2400 2497 7.282224 ACATTGTATGTTGTGAGTTGTGTAAGT 59.718 33.333 0.00 0.00 41.63 2.24
2401 2498 7.639039 ACATTGTATGTTGTGAGTTGTGTAAG 58.361 34.615 0.00 0.00 41.63 2.34
2402 2499 7.561021 ACATTGTATGTTGTGAGTTGTGTAA 57.439 32.000 0.00 0.00 41.63 2.41
2405 2502 6.953843 TGTACATTGTATGTTGTGAGTTGTG 58.046 36.000 0.00 0.00 41.63 3.33
2408 2505 6.374333 GGGATGTACATTGTATGTTGTGAGTT 59.626 38.462 10.30 0.00 41.63 3.01
2473 2573 3.958147 CCTTTTTGTTGGGGTGAAGTACT 59.042 43.478 0.00 0.00 0.00 2.73
2599 2706 4.851014 CGTGCACATACATGTTTCGATTTT 59.149 37.500 18.64 0.00 39.39 1.82
2602 2709 3.000041 ACGTGCACATACATGTTTCGAT 59.000 40.909 18.64 0.00 39.39 3.59
2603 2710 2.156697 CACGTGCACATACATGTTTCGA 59.843 45.455 18.64 0.00 39.39 3.71
2630 2737 2.658593 CGATGCCACCCGATCGAC 60.659 66.667 18.66 0.85 43.36 4.20
2637 2744 1.602323 TTGTTGGTCGATGCCACCC 60.602 57.895 0.00 0.00 38.42 4.61
2700 2811 0.110056 GTGACTCAATTGCAGTGCGG 60.110 55.000 11.20 0.00 0.00 5.69
2720 2831 5.350504 ACTCCAATGAGAAGATGATTCGT 57.649 39.130 0.00 0.00 41.42 3.85
2781 2900 7.625606 GCGCAGTACATACAAGTTAGGAAAAAT 60.626 37.037 0.30 0.00 0.00 1.82
2818 2938 2.106684 GGGATGGAGGGAGTATTTCACC 59.893 54.545 0.00 0.00 0.00 4.02
2824 2944 2.897823 ACTTGGGATGGAGGGAGTAT 57.102 50.000 0.00 0.00 0.00 2.12
2898 3022 4.472691 TCAACAAAAATGCACGAGAGAG 57.527 40.909 0.00 0.00 0.00 3.20
2900 3024 3.418619 CGTTCAACAAAAATGCACGAGAG 59.581 43.478 0.00 0.00 39.27 3.20
2901 3025 3.181505 ACGTTCAACAAAAATGCACGAGA 60.182 39.130 5.78 0.00 39.27 4.04
2902 3026 3.061928 CACGTTCAACAAAAATGCACGAG 60.062 43.478 5.78 0.00 39.27 4.18
2905 3029 2.926838 ACCACGTTCAACAAAAATGCAC 59.073 40.909 0.00 0.00 0.00 4.57
3010 3147 0.746063 AACACCCACAACATGTGCTG 59.254 50.000 0.00 0.00 46.51 4.41
3042 3179 0.905357 ACGCCTGATCTACCAGCTTT 59.095 50.000 0.00 0.00 32.97 3.51
3064 3201 7.227156 AGGTTTCATTACTGAACTGAAGACAT 58.773 34.615 0.00 0.00 41.05 3.06
3065 3202 6.591935 AGGTTTCATTACTGAACTGAAGACA 58.408 36.000 0.00 0.00 41.05 3.41
3071 3208 8.076178 CAGGTTTAAGGTTTCATTACTGAACTG 58.924 37.037 0.00 0.00 41.05 3.16
3096 3233 3.644966 AAGGGTGAACTCAACACTTCA 57.355 42.857 0.00 0.00 38.20 3.02
3097 3234 3.945285 TGAAAGGGTGAACTCAACACTTC 59.055 43.478 0.00 0.00 38.20 3.01
3112 3249 4.636206 GCTATACCAACTCTGTTGAAAGGG 59.364 45.833 11.47 0.00 0.00 3.95
3131 3268 2.373502 GTTCCAGCTATCCCTTGGCTAT 59.626 50.000 0.00 0.00 34.71 2.97
3139 3276 2.679082 TCCTACAGTTCCAGCTATCCC 58.321 52.381 0.00 0.00 0.00 3.85
3143 3280 6.382859 TGAATGTTATCCTACAGTTCCAGCTA 59.617 38.462 0.00 0.00 0.00 3.32
3149 3286 9.941664 CATGATTTGAATGTTATCCTACAGTTC 57.058 33.333 0.00 0.00 0.00 3.01
3155 3292 9.730705 GATCCTCATGATTTGAATGTTATCCTA 57.269 33.333 0.00 0.00 32.41 2.94
3156 3293 7.668886 GGATCCTCATGATTTGAATGTTATCCT 59.331 37.037 3.84 0.00 32.41 3.24
3164 3301 5.011738 GCCATTGGATCCTCATGATTTGAAT 59.988 40.000 20.45 3.98 32.41 2.57
3167 3304 3.006537 GGCCATTGGATCCTCATGATTTG 59.993 47.826 20.45 9.02 32.41 2.32
3188 3325 1.019673 CGTGCAAGATCCAAGATGGG 58.980 55.000 0.00 0.00 38.32 4.00
3194 3331 2.032634 GTCGGCGTGCAAGATCCAA 61.033 57.895 6.85 0.00 0.00 3.53
3240 3380 9.277783 AGTAACAGACTAAACGACTAACTAAGA 57.722 33.333 0.00 0.00 36.27 2.10
3241 3381 9.890352 AAGTAACAGACTAAACGACTAACTAAG 57.110 33.333 0.00 0.00 37.44 2.18
3242 3382 9.884465 GAAGTAACAGACTAAACGACTAACTAA 57.116 33.333 0.00 0.00 37.44 2.24
3244 3384 7.934457 TGAAGTAACAGACTAAACGACTAACT 58.066 34.615 0.00 0.00 37.44 2.24
3245 3385 8.072567 TCTGAAGTAACAGACTAAACGACTAAC 58.927 37.037 0.00 0.00 41.21 2.34
3297 3437 9.601217 AGAGAAACGAGCTAAATTAATATGTGT 57.399 29.630 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.