Multiple sequence alignment - TraesCS7D01G545000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G545000 chr7D 100.000 4397 0 0 1 4397 632359891 632364287 0.000000e+00 8120.0
1 TraesCS7D01G545000 chr7D 95.543 3949 159 12 99 4039 632351599 632355538 0.000000e+00 6301.0
2 TraesCS7D01G545000 chr7D 91.765 255 18 2 3 255 263487134 263487387 7.000000e-93 351.0
3 TraesCS7D01G545000 chr7B 92.082 3713 238 34 254 3940 744481614 744485296 0.000000e+00 5177.0
4 TraesCS7D01G545000 chr7B 92.090 3704 246 30 254 3940 744504117 744507790 0.000000e+00 5173.0
5 TraesCS7D01G545000 chr7B 92.409 3122 190 26 836 3940 744460477 744463568 0.000000e+00 4409.0
6 TraesCS7D01G545000 chr7B 91.710 2485 171 22 254 2729 744443210 744445668 0.000000e+00 3415.0
7 TraesCS7D01G545000 chr7B 93.196 1646 95 9 2304 3940 744494561 744496198 0.000000e+00 2403.0
8 TraesCS7D01G545000 chr7B 91.681 1695 131 10 254 1943 744492859 744494548 0.000000e+00 2340.0
9 TraesCS7D01G545000 chr7B 92.292 999 54 10 2952 3940 744445677 744446662 0.000000e+00 1397.0
10 TraesCS7D01G545000 chr7A 92.097 2670 176 22 254 2914 735378532 735375889 0.000000e+00 3729.0
11 TraesCS7D01G545000 chr7A 92.022 2670 178 22 254 2914 735396599 735393956 0.000000e+00 3718.0
12 TraesCS7D01G545000 chr7A 92.179 2621 170 22 254 2865 735360306 735357712 0.000000e+00 3672.0
13 TraesCS7D01G545000 chr7A 93.628 973 49 5 2979 3940 735375889 735374919 0.000000e+00 1441.0
14 TraesCS7D01G545000 chr7A 93.512 971 52 5 2979 3940 735393956 735392988 0.000000e+00 1434.0
15 TraesCS7D01G545000 chr7A 92.987 827 48 6 3122 3940 735343032 735342208 0.000000e+00 1197.0
16 TraesCS7D01G545000 chr7A 91.732 254 19 1 4 255 523622878 523623131 7.000000e-93 351.0
17 TraesCS7D01G545000 chr7A 92.958 142 10 0 2979 3120 735357645 735357504 1.600000e-49 207.0
18 TraesCS7D01G545000 chr7A 97.917 48 1 0 4350 4397 590092577 590092530 2.820000e-12 84.2
19 TraesCS7D01G545000 chr7A 97.917 48 1 0 4350 4397 702944433 702944386 2.820000e-12 84.2
20 TraesCS7D01G545000 chr7A 88.710 62 6 1 4336 4397 537275639 537275699 1.700000e-09 75.0
21 TraesCS7D01G545000 chr7A 95.000 40 2 0 2875 2914 735357684 735357645 3.670000e-06 63.9
22 TraesCS7D01G545000 chr3D 92.720 261 13 5 3 259 192060873 192060615 5.370000e-99 372.0
23 TraesCS7D01G545000 chr2B 91.797 256 19 1 3 256 590927466 590927211 5.410000e-94 355.0
24 TraesCS7D01G545000 chr1D 91.829 257 15 5 3 255 239826351 239826097 1.950000e-93 353.0
25 TraesCS7D01G545000 chr1D 91.473 258 16 5 4 258 240885886 240886140 2.520000e-92 350.0
26 TraesCS7D01G545000 chr1D 94.643 56 3 0 4341 4396 126970382 126970327 2.180000e-13 87.9
27 TraesCS7D01G545000 chr1D 95.918 49 2 0 4349 4397 17130643 17130595 3.650000e-11 80.5
28 TraesCS7D01G545000 chr5B 91.473 258 18 3 3 258 293222324 293222069 7.000000e-93 351.0
29 TraesCS7D01G545000 chr5B 91.440 257 18 3 3 257 492406470 492406216 2.520000e-92 350.0
30 TraesCS7D01G545000 chr5A 94.340 53 3 0 4345 4397 649541349 649541401 1.010000e-11 82.4
31 TraesCS7D01G545000 chr4A 97.826 46 1 0 4352 4397 612163564 612163519 3.650000e-11 80.5
32 TraesCS7D01G545000 chr2D 94.231 52 3 0 4346 4397 272875757 272875706 3.650000e-11 80.5
33 TraesCS7D01G545000 chr1A 94.231 52 3 0 4346 4397 499013337 499013286 3.650000e-11 80.5
34 TraesCS7D01G545000 chr2A 89.130 46 5 0 409 454 62264160 62264115 1.710000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G545000 chr7D 632359891 632364287 4396 False 8120.0 8120 100.0000 1 4397 1 chr7D.!!$F3 4396
1 TraesCS7D01G545000 chr7D 632351599 632355538 3939 False 6301.0 6301 95.5430 99 4039 1 chr7D.!!$F2 3940
2 TraesCS7D01G545000 chr7B 744481614 744485296 3682 False 5177.0 5177 92.0820 254 3940 1 chr7B.!!$F2 3686
3 TraesCS7D01G545000 chr7B 744504117 744507790 3673 False 5173.0 5173 92.0900 254 3940 1 chr7B.!!$F3 3686
4 TraesCS7D01G545000 chr7B 744460477 744463568 3091 False 4409.0 4409 92.4090 836 3940 1 chr7B.!!$F1 3104
5 TraesCS7D01G545000 chr7B 744443210 744446662 3452 False 2406.0 3415 92.0010 254 3940 2 chr7B.!!$F4 3686
6 TraesCS7D01G545000 chr7B 744492859 744496198 3339 False 2371.5 2403 92.4385 254 3940 2 chr7B.!!$F5 3686
7 TraesCS7D01G545000 chr7A 735374919 735378532 3613 True 2585.0 3729 92.8625 254 3940 2 chr7A.!!$R5 3686
8 TraesCS7D01G545000 chr7A 735392988 735396599 3611 True 2576.0 3718 92.7670 254 3940 2 chr7A.!!$R6 3686
9 TraesCS7D01G545000 chr7A 735357504 735360306 2802 True 1314.3 3672 93.3790 254 3120 3 chr7A.!!$R4 2866
10 TraesCS7D01G545000 chr7A 735342208 735343032 824 True 1197.0 1197 92.9870 3122 3940 1 chr7A.!!$R3 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.037326 TGAGCTGGCAGAAAGTACCG 60.037 55.0 20.86 0.0 0.00 4.02 F
1076 1080 0.398318 GAGTTTGAGGTGGAGCAGGT 59.602 55.0 0.00 0.0 0.00 4.00 F
2503 2526 1.105167 ATGCATGACTTCCCATGGCG 61.105 55.0 6.09 0.0 43.02 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1602 1.274167 TGGTCGACCGCTTTCTACATT 59.726 47.619 28.7 0.0 39.43 2.71 R
2802 2829 2.932614 AGTCAAGCAATGATACGCAGAC 59.067 45.455 0.0 0.0 40.97 3.51 R
4213 4273 0.039180 TAGCCAGTTCGGAGACCAGA 59.961 55.000 0.0 0.0 36.56 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.063510 TCTTGCTGGATCAAGAAGGTG 57.936 47.619 0.00 0.00 46.56 4.00
25 26 2.639347 TCTTGCTGGATCAAGAAGGTGA 59.361 45.455 0.00 0.00 46.56 4.02
26 27 2.775911 TGCTGGATCAAGAAGGTGAG 57.224 50.000 0.00 0.00 0.00 3.51
27 28 1.280133 TGCTGGATCAAGAAGGTGAGG 59.720 52.381 0.00 0.00 0.00 3.86
28 29 1.556911 GCTGGATCAAGAAGGTGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
29 30 2.679349 GCTGGATCAAGAAGGTGAGGAC 60.679 54.545 0.00 0.00 0.00 3.85
30 31 1.550524 TGGATCAAGAAGGTGAGGACG 59.449 52.381 0.00 0.00 0.00 4.79
31 32 1.550976 GGATCAAGAAGGTGAGGACGT 59.449 52.381 0.00 0.00 0.00 4.34
32 33 2.028020 GGATCAAGAAGGTGAGGACGTT 60.028 50.000 0.00 0.00 32.85 3.99
33 34 3.194968 GGATCAAGAAGGTGAGGACGTTA 59.805 47.826 0.00 0.00 30.31 3.18
34 35 4.141914 GGATCAAGAAGGTGAGGACGTTAT 60.142 45.833 0.00 0.00 30.31 1.89
35 36 4.451629 TCAAGAAGGTGAGGACGTTATC 57.548 45.455 0.00 0.00 30.31 1.75
36 37 3.119602 TCAAGAAGGTGAGGACGTTATCG 60.120 47.826 0.00 0.00 43.34 2.92
37 38 2.719739 AGAAGGTGAGGACGTTATCGA 58.280 47.619 0.00 0.00 40.62 3.59
38 39 2.683867 AGAAGGTGAGGACGTTATCGAG 59.316 50.000 0.00 0.00 40.62 4.04
39 40 0.739561 AGGTGAGGACGTTATCGAGC 59.260 55.000 0.00 0.00 40.62 5.03
40 41 0.739561 GGTGAGGACGTTATCGAGCT 59.260 55.000 0.00 0.00 40.62 4.09
41 42 1.945394 GGTGAGGACGTTATCGAGCTA 59.055 52.381 0.00 0.00 40.62 3.32
42 43 2.357009 GGTGAGGACGTTATCGAGCTAA 59.643 50.000 0.00 0.00 40.62 3.09
43 44 3.181493 GGTGAGGACGTTATCGAGCTAAA 60.181 47.826 0.00 0.00 40.62 1.85
44 45 3.790288 GTGAGGACGTTATCGAGCTAAAC 59.210 47.826 0.00 0.00 40.62 2.01
49 50 3.532213 CGTTATCGAGCTAAACGTGTG 57.468 47.619 13.66 0.00 40.69 3.82
50 51 2.912967 CGTTATCGAGCTAAACGTGTGT 59.087 45.455 13.66 0.00 40.69 3.72
51 52 3.362831 CGTTATCGAGCTAAACGTGTGTT 59.637 43.478 13.66 0.00 40.69 3.32
52 53 4.625135 GTTATCGAGCTAAACGTGTGTTG 58.375 43.478 0.00 0.00 38.62 3.33
53 54 2.495409 TCGAGCTAAACGTGTGTTGA 57.505 45.000 0.00 0.00 38.62 3.18
54 55 2.811855 TCGAGCTAAACGTGTGTTGAA 58.188 42.857 0.00 0.00 38.62 2.69
55 56 2.536803 TCGAGCTAAACGTGTGTTGAAC 59.463 45.455 0.00 0.00 38.62 3.18
56 57 2.655577 CGAGCTAAACGTGTGTTGAACG 60.656 50.000 0.00 0.00 46.32 3.95
57 58 1.004292 AGCTAAACGTGTGTTGAACGC 60.004 47.619 1.20 1.20 44.80 4.84
62 63 2.935955 GTGTGTTGAACGCGGAGG 59.064 61.111 12.47 0.00 0.00 4.30
63 64 1.885850 GTGTGTTGAACGCGGAGGT 60.886 57.895 12.47 0.00 0.00 3.85
64 65 1.885388 TGTGTTGAACGCGGAGGTG 60.885 57.895 12.47 0.00 0.00 4.00
65 66 2.970324 TGTTGAACGCGGAGGTGC 60.970 61.111 12.47 0.00 0.00 5.01
66 67 3.723348 GTTGAACGCGGAGGTGCC 61.723 66.667 12.47 0.00 0.00 5.01
75 76 2.505557 GGAGGTGCCGTACGTTCG 60.506 66.667 15.21 7.68 0.00 3.95
87 88 2.444351 GTACGTTCGGTACTTGATCGG 58.556 52.381 17.26 0.00 46.50 4.18
88 89 0.171903 ACGTTCGGTACTTGATCGGG 59.828 55.000 17.26 0.00 33.92 5.14
89 90 0.452987 CGTTCGGTACTTGATCGGGA 59.547 55.000 9.70 0.00 30.29 5.14
90 91 1.796617 CGTTCGGTACTTGATCGGGAC 60.797 57.143 9.70 0.00 30.29 4.46
91 92 1.203052 GTTCGGTACTTGATCGGGACA 59.797 52.381 3.75 0.00 30.29 4.02
92 93 1.100510 TCGGTACTTGATCGGGACAG 58.899 55.000 3.75 0.18 30.29 3.51
93 94 1.100510 CGGTACTTGATCGGGACAGA 58.899 55.000 3.75 0.00 0.00 3.41
94 95 1.681793 CGGTACTTGATCGGGACAGAT 59.318 52.381 3.75 0.00 0.00 2.90
95 96 2.287668 CGGTACTTGATCGGGACAGATC 60.288 54.545 5.64 5.64 45.35 2.75
121 122 2.163010 AGGTGTACGACTACATCAACCG 59.837 50.000 0.00 0.00 36.55 4.44
175 176 2.090267 AGGGTATGAAGATGCTCTCCCT 60.090 50.000 0.00 0.00 39.11 4.20
195 196 5.013287 TCCCTCTCTCGTAGCTATACATCTT 59.987 44.000 0.00 0.00 31.76 2.40
209 210 9.135189 AGCTATACATCTTCATGGATAGATCTC 57.865 37.037 15.64 1.54 45.81 2.75
211 212 7.953005 ATACATCTTCATGGATAGATCTCGT 57.047 36.000 0.00 0.00 30.88 4.18
218 219 5.130350 TCATGGATAGATCTCGTGTGTGTA 58.870 41.667 0.00 0.00 0.00 2.90
219 220 5.239525 TCATGGATAGATCTCGTGTGTGTAG 59.760 44.000 0.00 0.00 0.00 2.74
221 222 5.190677 TGGATAGATCTCGTGTGTGTAGAA 58.809 41.667 0.00 0.00 0.00 2.10
222 223 5.828328 TGGATAGATCTCGTGTGTGTAGAAT 59.172 40.000 0.00 0.00 0.00 2.40
223 224 6.321435 TGGATAGATCTCGTGTGTGTAGAATT 59.679 38.462 0.00 0.00 0.00 2.17
224 225 7.147897 TGGATAGATCTCGTGTGTGTAGAATTT 60.148 37.037 0.00 0.00 0.00 1.82
250 251 2.158475 TGTTCTCCATGCAACTTTCCCT 60.158 45.455 0.00 0.00 0.00 4.20
275 276 0.377203 AAATTTTCCGCGGCTCGATC 59.623 50.000 23.51 0.00 41.67 3.69
340 341 0.037326 TGAGCTGGCAGAAAGTACCG 60.037 55.000 20.86 0.00 0.00 4.02
422 423 3.921021 GGTGACTCATACGTCTCAAACTG 59.079 47.826 0.00 0.00 35.00 3.16
428 429 5.106237 ACTCATACGTCTCAAACTGACCTAC 60.106 44.000 0.00 0.00 0.00 3.18
520 523 5.260424 TGTAAATTCAATGCCTAGAGCCAA 58.740 37.500 0.00 0.00 42.71 4.52
578 581 1.102978 ATTCGGCATGTGTTAAGCCC 58.897 50.000 0.00 0.00 45.56 5.19
651 654 4.040755 ACTTATAAGGTGAGCCCACATCT 58.959 43.478 16.73 0.00 44.93 2.90
676 679 4.018688 GGGAAGGTGGTAAAGTAGTTCCAT 60.019 45.833 0.00 0.00 34.80 3.41
716 719 6.925610 TGTCCTCATCAAATCGGAAAATAG 57.074 37.500 0.00 0.00 0.00 1.73
818 822 0.929244 TCTAAGGCCCGTACCCTACT 59.071 55.000 0.00 0.00 30.93 2.57
846 850 2.029110 CCCATCCAAACGTTGCTCAATT 60.029 45.455 0.00 0.00 0.00 2.32
907 911 4.622933 GCAATAAAACACCCCATCTTTCCC 60.623 45.833 0.00 0.00 0.00 3.97
950 954 4.223255 AGAGTTTCCTCTTGTAGTTAGGGC 59.777 45.833 0.00 0.00 46.08 5.19
955 959 2.170817 CCTCTTGTAGTTAGGGCTTCCC 59.829 54.545 0.00 0.00 45.90 3.97
1076 1080 0.398318 GAGTTTGAGGTGGAGCAGGT 59.602 55.000 0.00 0.00 0.00 4.00
1077 1081 1.623811 GAGTTTGAGGTGGAGCAGGTA 59.376 52.381 0.00 0.00 0.00 3.08
1219 1224 1.832167 GTCCAAGCAAAGGCCACCA 60.832 57.895 5.01 0.00 42.56 4.17
1318 1323 1.698506 AAACTGGGACGCCAATTTCA 58.301 45.000 0.00 0.00 0.00 2.69
1329 1334 2.355756 CGCCAATTTCATCAAGGTCGAT 59.644 45.455 0.00 0.00 0.00 3.59
1374 1379 2.812011 GCTGGTGTGATTACTTTCCGTT 59.188 45.455 0.00 0.00 0.00 4.44
1535 1542 5.011090 TCATCAAGGTAGATTTGACTCGG 57.989 43.478 0.00 0.00 37.38 4.63
1594 1602 6.245408 AGGTTATAAAGAGTTGTCATTGGCA 58.755 36.000 0.00 0.00 0.00 4.92
1608 1616 1.904287 TTGGCAATGTAGAAAGCGGT 58.096 45.000 0.00 0.00 0.00 5.68
1827 1836 2.550830 ACTTGCGGAAACATCAGACT 57.449 45.000 0.00 0.00 0.00 3.24
1912 1921 5.068067 TGAACCTTGCATGAATGTCCATATG 59.932 40.000 0.00 0.00 0.00 1.78
2017 2026 3.560636 AGATAGGGTGGTATGTTGCAC 57.439 47.619 0.00 0.00 0.00 4.57
2207 2229 3.256879 TGCCTTCTTCTATCTAGCATCGG 59.743 47.826 0.00 0.00 0.00 4.18
2334 2357 7.241628 AGATACCACTACTGATCCATGTCATA 58.758 38.462 0.00 0.00 0.00 2.15
2338 2361 6.782494 ACCACTACTGATCCATGTCATATACA 59.218 38.462 0.00 0.00 43.86 2.29
2339 2362 7.039434 ACCACTACTGATCCATGTCATATACAG 60.039 40.741 0.00 0.00 42.70 2.74
2503 2526 1.105167 ATGCATGACTTCCCATGGCG 61.105 55.000 6.09 0.00 43.02 5.69
2624 2651 5.982890 TCTCACATGTGTCATCTTCACTA 57.017 39.130 24.63 0.63 36.83 2.74
2771 2798 5.819379 TGAGCTAATCTTTTAGATGCCACTG 59.181 40.000 0.00 0.00 37.59 3.66
2802 2829 7.713764 TCCATATTGACTATGAATGTGTTCG 57.286 36.000 0.00 0.00 39.79 3.95
2857 2884 5.466728 GGTGTACTAGCCATACATGTTGATG 59.533 44.000 2.30 2.19 35.11 3.07
2908 2953 2.997986 CCAATGCATTTTGAGAAGTGGC 59.002 45.455 9.83 0.00 0.00 5.01
2909 2954 3.555377 CCAATGCATTTTGAGAAGTGGCA 60.555 43.478 9.83 0.00 0.00 4.92
2920 2965 4.193826 GAGAAGTGGCACTTGTCATCTA 57.806 45.455 37.84 0.00 44.89 1.98
3099 3144 7.092079 TGTCTTTTGATTAATGCATGTCTTGG 58.908 34.615 0.00 0.00 0.00 3.61
3120 3165 3.548668 GGTTTGTGTTTTAGTTTGTCGCC 59.451 43.478 0.00 0.00 0.00 5.54
3170 3215 8.081025 TGTAATTAACCATGTTTTCGTAAACCC 58.919 33.333 14.09 0.00 42.39 4.11
3737 3794 1.077716 CGGTCCATGTTCTTCCCCC 60.078 63.158 0.00 0.00 0.00 5.40
3951 4011 2.094752 CGGGTGATGTGTGGATTTTTCC 60.095 50.000 0.00 0.00 0.00 3.13
3952 4012 2.896685 GGGTGATGTGTGGATTTTTCCA 59.103 45.455 0.00 0.00 37.46 3.53
3953 4013 3.515104 GGGTGATGTGTGGATTTTTCCAT 59.485 43.478 0.00 0.00 42.41 3.41
3954 4014 4.381932 GGGTGATGTGTGGATTTTTCCATC 60.382 45.833 0.00 0.00 42.41 3.51
3955 4015 4.220382 GGTGATGTGTGGATTTTTCCATCA 59.780 41.667 0.00 0.00 42.41 3.07
3956 4016 5.163513 GTGATGTGTGGATTTTTCCATCAC 58.836 41.667 12.95 12.95 46.60 3.06
3957 4017 4.220382 TGATGTGTGGATTTTTCCATCACC 59.780 41.667 17.31 6.49 42.41 4.02
4018 4078 7.781548 AATTCCATCTAGCAATTTTTCATGC 57.218 32.000 0.00 0.00 42.87 4.06
4039 4099 6.399639 TGCTCACAATGCATGATTATTGAT 57.600 33.333 18.59 6.15 37.63 2.57
4040 4100 7.513371 TGCTCACAATGCATGATTATTGATA 57.487 32.000 18.59 9.13 37.63 2.15
4041 4101 8.117813 TGCTCACAATGCATGATTATTGATAT 57.882 30.769 18.59 1.34 37.63 1.63
4042 4102 8.581578 TGCTCACAATGCATGATTATTGATATT 58.418 29.630 18.59 1.08 37.63 1.28
4043 4103 9.419297 GCTCACAATGCATGATTATTGATATTT 57.581 29.630 18.59 0.81 37.63 1.40
4061 4121 9.944663 TTGATATTTATGCATTTTACGGAGTTC 57.055 29.630 3.54 0.00 37.78 3.01
4062 4122 9.114952 TGATATTTATGCATTTTACGGAGTTCA 57.885 29.630 3.54 0.00 37.78 3.18
4065 4125 8.633075 ATTTATGCATTTTACGGAGTTCATTG 57.367 30.769 3.54 0.00 37.78 2.82
4066 4126 3.832276 TGCATTTTACGGAGTTCATTGC 58.168 40.909 0.00 0.00 37.78 3.56
4067 4127 3.254411 TGCATTTTACGGAGTTCATTGCA 59.746 39.130 0.00 0.00 37.78 4.08
4068 4128 4.082300 TGCATTTTACGGAGTTCATTGCAT 60.082 37.500 0.00 0.00 37.78 3.96
4069 4129 5.124617 TGCATTTTACGGAGTTCATTGCATA 59.875 36.000 0.00 0.00 37.78 3.14
4070 4130 5.682862 GCATTTTACGGAGTTCATTGCATAG 59.317 40.000 0.00 0.00 37.78 2.23
4071 4131 4.875544 TTTACGGAGTTCATTGCATAGC 57.124 40.909 0.00 0.00 37.78 2.97
4072 4132 2.698855 ACGGAGTTCATTGCATAGCT 57.301 45.000 0.00 0.00 37.78 3.32
4073 4133 2.991250 ACGGAGTTCATTGCATAGCTT 58.009 42.857 0.00 0.00 37.78 3.74
4074 4134 3.347216 ACGGAGTTCATTGCATAGCTTT 58.653 40.909 0.00 0.00 37.78 3.51
4075 4135 3.758554 ACGGAGTTCATTGCATAGCTTTT 59.241 39.130 0.00 0.00 37.78 2.27
4076 4136 4.941263 ACGGAGTTCATTGCATAGCTTTTA 59.059 37.500 0.00 0.00 37.78 1.52
4077 4137 5.065218 ACGGAGTTCATTGCATAGCTTTTAG 59.935 40.000 0.00 0.00 37.78 1.85
4078 4138 5.277047 GGAGTTCATTGCATAGCTTTTAGC 58.723 41.667 0.00 0.00 42.84 3.09
4079 4139 5.254339 AGTTCATTGCATAGCTTTTAGCC 57.746 39.130 0.00 0.00 43.77 3.93
4080 4140 4.952335 AGTTCATTGCATAGCTTTTAGCCT 59.048 37.500 0.00 0.00 43.77 4.58
4081 4141 5.420104 AGTTCATTGCATAGCTTTTAGCCTT 59.580 36.000 0.00 0.00 43.77 4.35
4082 4142 5.252969 TCATTGCATAGCTTTTAGCCTTG 57.747 39.130 0.00 0.00 43.77 3.61
4083 4143 4.949238 TCATTGCATAGCTTTTAGCCTTGA 59.051 37.500 0.00 0.00 43.77 3.02
4084 4144 5.595542 TCATTGCATAGCTTTTAGCCTTGAT 59.404 36.000 0.00 0.00 43.77 2.57
4085 4145 5.920193 TTGCATAGCTTTTAGCCTTGATT 57.080 34.783 0.00 0.00 43.77 2.57
4086 4146 7.285172 TCATTGCATAGCTTTTAGCCTTGATTA 59.715 33.333 0.00 0.00 43.77 1.75
4087 4147 6.624352 TGCATAGCTTTTAGCCTTGATTAG 57.376 37.500 0.00 0.00 43.77 1.73
4088 4148 6.122277 TGCATAGCTTTTAGCCTTGATTAGT 58.878 36.000 0.00 0.00 43.77 2.24
4089 4149 6.603201 TGCATAGCTTTTAGCCTTGATTAGTT 59.397 34.615 0.00 0.00 43.77 2.24
4090 4150 7.122650 TGCATAGCTTTTAGCCTTGATTAGTTT 59.877 33.333 0.00 0.00 43.77 2.66
4091 4151 7.976175 GCATAGCTTTTAGCCTTGATTAGTTTT 59.024 33.333 0.00 0.00 43.77 2.43
4092 4152 9.860898 CATAGCTTTTAGCCTTGATTAGTTTTT 57.139 29.630 0.00 0.00 43.77 1.94
4121 4181 9.278978 AGTTTTCCTTTGTTTTATTGTGTTTGT 57.721 25.926 0.00 0.00 0.00 2.83
4124 4184 8.934507 TTCCTTTGTTTTATTGTGTTTGTAGG 57.065 30.769 0.00 0.00 0.00 3.18
4125 4185 8.068892 TCCTTTGTTTTATTGTGTTTGTAGGT 57.931 30.769 0.00 0.00 0.00 3.08
4126 4186 7.976734 TCCTTTGTTTTATTGTGTTTGTAGGTG 59.023 33.333 0.00 0.00 0.00 4.00
4127 4187 7.762159 CCTTTGTTTTATTGTGTTTGTAGGTGT 59.238 33.333 0.00 0.00 0.00 4.16
4128 4188 9.790389 CTTTGTTTTATTGTGTTTGTAGGTGTA 57.210 29.630 0.00 0.00 0.00 2.90
4131 4191 9.737427 TGTTTTATTGTGTTTGTAGGTGTAATG 57.263 29.630 0.00 0.00 0.00 1.90
4132 4192 9.187455 GTTTTATTGTGTTTGTAGGTGTAATGG 57.813 33.333 0.00 0.00 0.00 3.16
4133 4193 8.693120 TTTATTGTGTTTGTAGGTGTAATGGA 57.307 30.769 0.00 0.00 0.00 3.41
4134 4194 6.817765 ATTGTGTTTGTAGGTGTAATGGAG 57.182 37.500 0.00 0.00 0.00 3.86
4135 4195 5.298989 TGTGTTTGTAGGTGTAATGGAGT 57.701 39.130 0.00 0.00 0.00 3.85
4136 4196 5.686753 TGTGTTTGTAGGTGTAATGGAGTT 58.313 37.500 0.00 0.00 0.00 3.01
4137 4197 5.761234 TGTGTTTGTAGGTGTAATGGAGTTC 59.239 40.000 0.00 0.00 0.00 3.01
4138 4198 5.180680 GTGTTTGTAGGTGTAATGGAGTTCC 59.819 44.000 0.00 0.00 0.00 3.62
4150 4210 2.265367 TGGAGTTCCATGGACTTAGCA 58.735 47.619 15.91 0.00 42.01 3.49
4151 4211 2.642311 TGGAGTTCCATGGACTTAGCAA 59.358 45.455 15.91 0.00 42.01 3.91
4152 4212 3.073798 TGGAGTTCCATGGACTTAGCAAA 59.926 43.478 15.91 0.00 42.01 3.68
4153 4213 4.263905 TGGAGTTCCATGGACTTAGCAAAT 60.264 41.667 15.91 0.00 42.01 2.32
4154 4214 4.706962 GGAGTTCCATGGACTTAGCAAATT 59.293 41.667 15.91 0.00 35.64 1.82
4155 4215 5.885912 GGAGTTCCATGGACTTAGCAAATTA 59.114 40.000 15.91 0.00 35.64 1.40
4156 4216 6.377146 GGAGTTCCATGGACTTAGCAAATTAA 59.623 38.462 15.91 0.00 35.64 1.40
4157 4217 7.093945 GGAGTTCCATGGACTTAGCAAATTAAA 60.094 37.037 15.91 0.00 35.64 1.52
4158 4218 8.189119 AGTTCCATGGACTTAGCAAATTAAAA 57.811 30.769 15.91 0.00 0.00 1.52
4159 4219 8.306761 AGTTCCATGGACTTAGCAAATTAAAAG 58.693 33.333 15.91 0.00 0.00 2.27
4160 4220 7.169158 TCCATGGACTTAGCAAATTAAAAGG 57.831 36.000 11.44 0.00 0.00 3.11
4161 4221 6.154363 TCCATGGACTTAGCAAATTAAAAGGG 59.846 38.462 11.44 0.00 0.00 3.95
4162 4222 6.154363 CCATGGACTTAGCAAATTAAAAGGGA 59.846 38.462 5.56 0.00 0.00 4.20
4163 4223 6.584185 TGGACTTAGCAAATTAAAAGGGAC 57.416 37.500 0.00 0.00 0.00 4.46
4164 4224 5.479027 TGGACTTAGCAAATTAAAAGGGACC 59.521 40.000 0.00 0.00 0.00 4.46
4165 4225 5.479027 GGACTTAGCAAATTAAAAGGGACCA 59.521 40.000 0.00 0.00 0.00 4.02
4166 4226 6.014925 GGACTTAGCAAATTAAAAGGGACCAA 60.015 38.462 0.00 0.00 0.00 3.67
4167 4227 6.993079 ACTTAGCAAATTAAAAGGGACCAAG 58.007 36.000 0.00 0.00 0.00 3.61
4168 4228 6.553476 ACTTAGCAAATTAAAAGGGACCAAGT 59.447 34.615 0.00 0.00 0.00 3.16
4169 4229 5.887214 AGCAAATTAAAAGGGACCAAGTT 57.113 34.783 0.00 0.00 0.00 2.66
4170 4230 6.247229 AGCAAATTAAAAGGGACCAAGTTT 57.753 33.333 0.00 0.00 0.00 2.66
4171 4231 6.054941 AGCAAATTAAAAGGGACCAAGTTTG 58.945 36.000 0.00 0.00 0.00 2.93
4185 4245 3.757836 GTTTGGGCCAAACCTAGGA 57.242 52.632 39.84 15.06 45.32 2.94
4186 4246 1.545841 GTTTGGGCCAAACCTAGGAG 58.454 55.000 39.84 4.66 45.32 3.69
4187 4247 0.407918 TTTGGGCCAAACCTAGGAGG 59.592 55.000 27.28 15.00 42.49 4.30
4207 4267 7.648039 GGAGGTCTCCGATATAGTTGATATT 57.352 40.000 0.77 0.00 40.36 1.28
4208 4268 8.749026 GGAGGTCTCCGATATAGTTGATATTA 57.251 38.462 0.77 0.00 40.36 0.98
4209 4269 9.357161 GGAGGTCTCCGATATAGTTGATATTAT 57.643 37.037 0.77 0.00 40.36 1.28
4223 4283 6.986817 AGTTGATATTATTTGTCTGGTCTCCG 59.013 38.462 0.00 0.00 0.00 4.63
4224 4284 6.724893 TGATATTATTTGTCTGGTCTCCGA 57.275 37.500 0.00 0.00 0.00 4.55
4225 4285 7.119709 TGATATTATTTGTCTGGTCTCCGAA 57.880 36.000 0.00 0.00 0.00 4.30
4226 4286 6.984474 TGATATTATTTGTCTGGTCTCCGAAC 59.016 38.462 0.00 0.00 0.00 3.95
4227 4287 4.884668 TTATTTGTCTGGTCTCCGAACT 57.115 40.909 0.00 0.00 0.00 3.01
4228 4288 2.526304 TTTGTCTGGTCTCCGAACTG 57.474 50.000 0.00 0.00 0.00 3.16
4229 4289 0.679505 TTGTCTGGTCTCCGAACTGG 59.320 55.000 0.00 0.00 40.09 4.00
4230 4290 1.079750 GTCTGGTCTCCGAACTGGC 60.080 63.158 0.00 0.00 37.80 4.85
4231 4291 1.228894 TCTGGTCTCCGAACTGGCT 60.229 57.895 0.00 0.00 37.80 4.75
4232 4292 0.039180 TCTGGTCTCCGAACTGGCTA 59.961 55.000 0.00 0.00 37.80 3.93
4233 4293 0.457851 CTGGTCTCCGAACTGGCTAG 59.542 60.000 0.00 0.00 37.80 3.42
4234 4294 0.251653 TGGTCTCCGAACTGGCTAGT 60.252 55.000 0.00 0.00 39.32 2.57
4235 4295 0.173708 GGTCTCCGAACTGGCTAGTG 59.826 60.000 2.40 0.00 37.19 2.74
4236 4296 1.174783 GTCTCCGAACTGGCTAGTGA 58.825 55.000 2.40 0.00 37.19 3.41
4237 4297 1.133407 GTCTCCGAACTGGCTAGTGAG 59.867 57.143 2.40 6.60 37.19 3.51
4238 4298 0.457851 CTCCGAACTGGCTAGTGAGG 59.542 60.000 15.28 15.28 37.19 3.86
4239 4299 0.970937 TCCGAACTGGCTAGTGAGGG 60.971 60.000 19.34 13.84 37.19 4.30
4240 4300 1.258445 CCGAACTGGCTAGTGAGGGT 61.258 60.000 2.40 0.00 37.19 4.34
4241 4301 1.471119 CGAACTGGCTAGTGAGGGTA 58.529 55.000 2.40 0.00 37.19 3.69
4242 4302 1.134560 CGAACTGGCTAGTGAGGGTAC 59.865 57.143 2.40 0.00 37.19 3.34
4243 4303 1.481363 GAACTGGCTAGTGAGGGTACC 59.519 57.143 2.40 2.17 43.85 3.34
4263 4323 8.520835 GGTACCTTTCAAATTTCATGAGAAAC 57.479 34.615 4.06 0.00 45.79 2.78
4264 4324 8.141268 GGTACCTTTCAAATTTCATGAGAAACA 58.859 33.333 4.06 0.00 45.79 2.83
4265 4325 9.696917 GTACCTTTCAAATTTCATGAGAAACAT 57.303 29.630 0.00 0.00 45.79 2.71
4267 4327 9.918630 ACCTTTCAAATTTCATGAGAAACATAG 57.081 29.630 0.00 0.00 45.79 2.23
4268 4328 9.918630 CCTTTCAAATTTCATGAGAAACATAGT 57.081 29.630 0.00 0.00 45.79 2.12
4270 4330 9.912634 TTTCAAATTTCATGAGAAACATAGTCC 57.087 29.630 0.00 0.00 45.79 3.85
4271 4331 7.751732 TCAAATTTCATGAGAAACATAGTCCG 58.248 34.615 0.00 0.00 45.79 4.79
4272 4332 7.390440 TCAAATTTCATGAGAAACATAGTCCGT 59.610 33.333 0.00 0.00 45.79 4.69
4273 4333 7.687941 AATTTCATGAGAAACATAGTCCGTT 57.312 32.000 0.00 0.00 45.79 4.44
4274 4334 7.687941 ATTTCATGAGAAACATAGTCCGTTT 57.312 32.000 0.00 0.00 45.79 3.60
4275 4335 6.480524 TTCATGAGAAACATAGTCCGTTTG 57.519 37.500 0.00 0.00 36.72 2.93
4276 4336 4.391830 TCATGAGAAACATAGTCCGTTTGC 59.608 41.667 0.00 0.00 36.72 3.68
4277 4337 4.002906 TGAGAAACATAGTCCGTTTGCT 57.997 40.909 0.00 0.00 36.72 3.91
4278 4338 5.142061 TGAGAAACATAGTCCGTTTGCTA 57.858 39.130 0.00 0.00 36.72 3.49
4279 4339 5.730550 TGAGAAACATAGTCCGTTTGCTAT 58.269 37.500 0.00 0.00 36.72 2.97
4280 4340 5.810587 TGAGAAACATAGTCCGTTTGCTATC 59.189 40.000 0.00 0.00 36.72 2.08
4281 4341 5.116882 AGAAACATAGTCCGTTTGCTATCC 58.883 41.667 0.00 0.00 36.72 2.59
4282 4342 4.481368 AACATAGTCCGTTTGCTATCCA 57.519 40.909 0.00 0.00 0.00 3.41
4283 4343 4.481368 ACATAGTCCGTTTGCTATCCAA 57.519 40.909 0.00 0.00 0.00 3.53
4284 4344 4.839121 ACATAGTCCGTTTGCTATCCAAA 58.161 39.130 0.00 0.00 40.97 3.28
4295 4355 6.767524 TTTGCTATCCAAACGTCCAAATAT 57.232 33.333 0.00 0.00 38.46 1.28
4296 4356 6.767524 TTGCTATCCAAACGTCCAAATATT 57.232 33.333 0.00 0.00 0.00 1.28
4297 4357 6.130298 TGCTATCCAAACGTCCAAATATTG 57.870 37.500 0.00 0.00 0.00 1.90
4298 4358 5.650266 TGCTATCCAAACGTCCAAATATTGT 59.350 36.000 0.00 0.00 0.00 2.71
4299 4359 5.971202 GCTATCCAAACGTCCAAATATTGTG 59.029 40.000 0.00 0.00 0.00 3.33
4300 4360 4.775058 TCCAAACGTCCAAATATTGTGG 57.225 40.909 9.25 9.25 37.51 4.17
4301 4361 3.057174 TCCAAACGTCCAAATATTGTGGC 60.057 43.478 10.23 6.48 35.99 5.01
4302 4362 3.305676 CCAAACGTCCAAATATTGTGGCA 60.306 43.478 10.23 0.00 35.99 4.92
4303 4363 3.569250 AACGTCCAAATATTGTGGCAC 57.431 42.857 11.55 11.55 35.99 5.01
4304 4364 2.790433 ACGTCCAAATATTGTGGCACT 58.210 42.857 19.83 1.37 35.99 4.40
4305 4365 3.945346 ACGTCCAAATATTGTGGCACTA 58.055 40.909 19.83 12.22 35.99 2.74
4306 4366 3.938963 ACGTCCAAATATTGTGGCACTAG 59.061 43.478 19.83 0.00 35.99 2.57
4307 4367 3.938963 CGTCCAAATATTGTGGCACTAGT 59.061 43.478 19.83 7.17 35.99 2.57
4308 4368 5.113383 CGTCCAAATATTGTGGCACTAGTA 58.887 41.667 19.83 9.17 35.99 1.82
4309 4369 5.234329 CGTCCAAATATTGTGGCACTAGTAG 59.766 44.000 19.83 0.00 35.99 2.57
4310 4370 5.007724 GTCCAAATATTGTGGCACTAGTAGC 59.992 44.000 19.83 1.67 35.99 3.58
4318 4378 2.678471 GGCACTAGTAGCCGGTTAAA 57.322 50.000 17.01 0.00 43.15 1.52
4319 4379 2.976589 GGCACTAGTAGCCGGTTAAAA 58.023 47.619 17.01 0.00 43.15 1.52
4320 4380 3.538591 GGCACTAGTAGCCGGTTAAAAT 58.461 45.455 17.01 0.00 43.15 1.82
4321 4381 4.696455 GGCACTAGTAGCCGGTTAAAATA 58.304 43.478 17.01 0.00 43.15 1.40
4322 4382 5.118286 GGCACTAGTAGCCGGTTAAAATAA 58.882 41.667 17.01 0.00 43.15 1.40
4323 4383 5.761726 GGCACTAGTAGCCGGTTAAAATAAT 59.238 40.000 17.01 0.00 43.15 1.28
4324 4384 6.261603 GGCACTAGTAGCCGGTTAAAATAATT 59.738 38.462 17.01 0.00 43.15 1.40
4325 4385 7.442062 GGCACTAGTAGCCGGTTAAAATAATTA 59.558 37.037 17.01 0.00 43.15 1.40
4326 4386 8.829612 GCACTAGTAGCCGGTTAAAATAATTAA 58.170 33.333 1.90 0.00 0.00 1.40
4329 4389 9.853921 CTAGTAGCCGGTTAAAATAATTAAACG 57.146 33.333 1.90 10.52 42.72 3.60
4330 4390 8.267620 AGTAGCCGGTTAAAATAATTAAACGT 57.732 30.769 14.85 3.20 41.85 3.99
4331 4391 8.729756 AGTAGCCGGTTAAAATAATTAAACGTT 58.270 29.630 14.85 0.00 41.85 3.99
4332 4392 9.340695 GTAGCCGGTTAAAATAATTAAACGTTT 57.659 29.630 18.90 18.90 41.85 3.60
4333 4393 8.230112 AGCCGGTTAAAATAATTAAACGTTTG 57.770 30.769 23.46 1.87 41.85 2.93
4334 4394 6.949327 GCCGGTTAAAATAATTAAACGTTTGC 59.051 34.615 23.46 8.28 41.85 3.68
4335 4395 7.359014 GCCGGTTAAAATAATTAAACGTTTGCA 60.359 33.333 23.46 10.30 41.85 4.08
4336 4396 8.485591 CCGGTTAAAATAATTAAACGTTTGCAA 58.514 29.630 23.46 11.10 41.85 4.08
4337 4397 9.845305 CGGTTAAAATAATTAAACGTTTGCAAA 57.155 25.926 23.46 8.05 39.45 3.68
4353 4413 9.657121 ACGTTTGCAAATAAAATTTATTGTTGG 57.343 25.926 16.21 4.25 0.00 3.77
4354 4414 9.111702 CGTTTGCAAATAAAATTTATTGTTGGG 57.888 29.630 16.21 2.22 0.00 4.12
4355 4415 9.958234 GTTTGCAAATAAAATTTATTGTTGGGT 57.042 25.926 16.21 0.00 0.00 4.51
4356 4416 9.956720 TTTGCAAATAAAATTTATTGTTGGGTG 57.043 25.926 8.05 6.50 0.00 4.61
4357 4417 8.908786 TGCAAATAAAATTTATTGTTGGGTGA 57.091 26.923 11.26 0.00 0.00 4.02
4358 4418 9.512588 TGCAAATAAAATTTATTGTTGGGTGAT 57.487 25.926 11.26 0.00 0.00 3.06
4364 4424 7.696992 AAATTTATTGTTGGGTGATACGTCT 57.303 32.000 0.00 0.00 0.00 4.18
4365 4425 6.677781 ATTTATTGTTGGGTGATACGTCTG 57.322 37.500 0.00 0.00 0.00 3.51
4366 4426 1.803334 TTGTTGGGTGATACGTCTGC 58.197 50.000 0.00 0.00 0.00 4.26
4367 4427 0.682292 TGTTGGGTGATACGTCTGCA 59.318 50.000 0.00 0.00 0.00 4.41
4368 4428 1.070914 TGTTGGGTGATACGTCTGCAA 59.929 47.619 0.00 0.00 0.00 4.08
4369 4429 1.463444 GTTGGGTGATACGTCTGCAAC 59.537 52.381 0.00 0.00 0.00 4.17
4370 4430 0.682292 TGGGTGATACGTCTGCAACA 59.318 50.000 0.00 0.00 0.00 3.33
4371 4431 1.277842 TGGGTGATACGTCTGCAACAT 59.722 47.619 0.00 0.00 0.00 2.71
4372 4432 2.498078 TGGGTGATACGTCTGCAACATA 59.502 45.455 0.00 0.00 0.00 2.29
4373 4433 3.133901 TGGGTGATACGTCTGCAACATAT 59.866 43.478 0.00 0.00 0.00 1.78
4374 4434 3.741344 GGGTGATACGTCTGCAACATATC 59.259 47.826 0.00 7.64 0.00 1.63
4375 4435 4.501571 GGGTGATACGTCTGCAACATATCT 60.502 45.833 12.77 0.00 0.00 1.98
4376 4436 5.278808 GGGTGATACGTCTGCAACATATCTA 60.279 44.000 12.77 2.51 0.00 1.98
4377 4437 6.390721 GGTGATACGTCTGCAACATATCTAT 58.609 40.000 12.77 0.00 0.00 1.98
4378 4438 7.362660 GGGTGATACGTCTGCAACATATCTATA 60.363 40.741 12.77 0.00 0.00 1.31
4379 4439 8.027189 GGTGATACGTCTGCAACATATCTATAA 58.973 37.037 12.77 0.00 0.00 0.98
4380 4440 9.574458 GTGATACGTCTGCAACATATCTATAAT 57.426 33.333 12.77 0.00 0.00 1.28
4385 4445 9.935682 ACGTCTGCAACATATCTATAATTTTTG 57.064 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.008330 CTCACCTTCTTGATCCAGCAAG 58.992 50.000 0.00 0.00 45.10 4.01
6 7 2.290514 CCTCACCTTCTTGATCCAGCAA 60.291 50.000 0.00 0.00 0.00 3.91
7 8 1.280133 CCTCACCTTCTTGATCCAGCA 59.720 52.381 0.00 0.00 0.00 4.41
8 9 1.556911 TCCTCACCTTCTTGATCCAGC 59.443 52.381 0.00 0.00 0.00 4.85
9 10 2.417924 CGTCCTCACCTTCTTGATCCAG 60.418 54.545 0.00 0.00 0.00 3.86
10 11 1.550524 CGTCCTCACCTTCTTGATCCA 59.449 52.381 0.00 0.00 0.00 3.41
11 12 1.550976 ACGTCCTCACCTTCTTGATCC 59.449 52.381 0.00 0.00 0.00 3.36
12 13 3.320673 AACGTCCTCACCTTCTTGATC 57.679 47.619 0.00 0.00 0.00 2.92
13 14 4.440250 CGATAACGTCCTCACCTTCTTGAT 60.440 45.833 0.00 0.00 34.56 2.57
14 15 3.119602 CGATAACGTCCTCACCTTCTTGA 60.120 47.826 0.00 0.00 34.56 3.02
15 16 3.119602 TCGATAACGTCCTCACCTTCTTG 60.120 47.826 0.00 0.00 40.69 3.02
16 17 3.087031 TCGATAACGTCCTCACCTTCTT 58.913 45.455 0.00 0.00 40.69 2.52
17 18 2.683867 CTCGATAACGTCCTCACCTTCT 59.316 50.000 0.00 0.00 40.69 2.85
18 19 2.795331 GCTCGATAACGTCCTCACCTTC 60.795 54.545 0.00 0.00 40.69 3.46
19 20 1.134560 GCTCGATAACGTCCTCACCTT 59.865 52.381 0.00 0.00 40.69 3.50
20 21 0.739561 GCTCGATAACGTCCTCACCT 59.260 55.000 0.00 0.00 40.69 4.00
21 22 0.739561 AGCTCGATAACGTCCTCACC 59.260 55.000 0.00 0.00 40.69 4.02
22 23 3.687572 TTAGCTCGATAACGTCCTCAC 57.312 47.619 0.00 0.00 40.69 3.51
23 24 3.486375 CGTTTAGCTCGATAACGTCCTCA 60.486 47.826 12.43 0.00 39.64 3.86
24 25 3.034562 CGTTTAGCTCGATAACGTCCTC 58.965 50.000 12.43 0.00 39.64 3.71
25 26 3.062323 CGTTTAGCTCGATAACGTCCT 57.938 47.619 12.43 0.00 39.64 3.85
30 31 4.383649 TCAACACACGTTTAGCTCGATAAC 59.616 41.667 0.00 0.00 31.13 1.89
31 32 4.548494 TCAACACACGTTTAGCTCGATAA 58.452 39.130 0.00 0.00 31.13 1.75
32 33 4.163458 TCAACACACGTTTAGCTCGATA 57.837 40.909 0.00 0.00 31.13 2.92
33 34 3.021269 TCAACACACGTTTAGCTCGAT 57.979 42.857 0.00 0.00 31.13 3.59
34 35 2.495409 TCAACACACGTTTAGCTCGA 57.505 45.000 0.00 0.00 31.13 4.04
35 36 2.655577 CGTTCAACACACGTTTAGCTCG 60.656 50.000 0.00 0.00 31.13 5.03
36 37 2.887733 CGTTCAACACACGTTTAGCTC 58.112 47.619 0.00 0.00 31.13 4.09
37 38 1.004292 GCGTTCAACACACGTTTAGCT 60.004 47.619 0.00 0.00 39.92 3.32
38 39 1.382163 GCGTTCAACACACGTTTAGC 58.618 50.000 0.00 0.00 39.92 3.09
39 40 1.643298 CGCGTTCAACACACGTTTAG 58.357 50.000 0.00 0.00 39.92 1.85
40 41 0.301088 CCGCGTTCAACACACGTTTA 59.699 50.000 4.92 0.00 39.92 2.01
41 42 1.061253 CCGCGTTCAACACACGTTT 59.939 52.632 4.92 0.00 39.92 3.60
42 43 1.758319 CTCCGCGTTCAACACACGTT 61.758 55.000 4.92 0.00 39.92 3.99
43 44 2.202770 TCCGCGTTCAACACACGT 60.203 55.556 4.92 0.00 39.92 4.49
44 45 2.544359 CTCCGCGTTCAACACACG 59.456 61.111 4.92 0.00 40.75 4.49
45 46 1.885850 ACCTCCGCGTTCAACACAC 60.886 57.895 4.92 0.00 0.00 3.82
46 47 1.885388 CACCTCCGCGTTCAACACA 60.885 57.895 4.92 0.00 0.00 3.72
47 48 2.935955 CACCTCCGCGTTCAACAC 59.064 61.111 4.92 0.00 0.00 3.32
48 49 2.970324 GCACCTCCGCGTTCAACA 60.970 61.111 4.92 0.00 0.00 3.33
49 50 3.723348 GGCACCTCCGCGTTCAAC 61.723 66.667 4.92 0.00 0.00 3.18
58 59 2.505557 CGAACGTACGGCACCTCC 60.506 66.667 21.06 0.00 0.00 4.30
59 60 2.505557 CCGAACGTACGGCACCTC 60.506 66.667 21.06 6.84 46.20 3.85
67 68 2.444351 CCGATCAAGTACCGAACGTAC 58.556 52.381 10.35 0.00 46.69 3.67
68 69 1.401552 CCCGATCAAGTACCGAACGTA 59.598 52.381 10.35 0.00 0.00 3.57
69 70 0.171903 CCCGATCAAGTACCGAACGT 59.828 55.000 10.35 0.00 0.00 3.99
70 71 0.452987 TCCCGATCAAGTACCGAACG 59.547 55.000 5.81 5.81 0.00 3.95
71 72 1.203052 TGTCCCGATCAAGTACCGAAC 59.797 52.381 0.00 0.00 0.00 3.95
72 73 1.475280 CTGTCCCGATCAAGTACCGAA 59.525 52.381 0.00 0.00 0.00 4.30
73 74 1.100510 CTGTCCCGATCAAGTACCGA 58.899 55.000 0.00 0.00 0.00 4.69
74 75 1.100510 TCTGTCCCGATCAAGTACCG 58.899 55.000 0.00 0.00 0.00 4.02
75 76 2.287668 CGATCTGTCCCGATCAAGTACC 60.288 54.545 0.00 0.00 39.78 3.34
76 77 2.358267 ACGATCTGTCCCGATCAAGTAC 59.642 50.000 0.00 0.00 39.78 2.73
77 78 2.357952 CACGATCTGTCCCGATCAAGTA 59.642 50.000 0.00 0.00 39.78 2.24
78 79 1.135139 CACGATCTGTCCCGATCAAGT 59.865 52.381 0.00 0.00 39.78 3.16
79 80 1.405463 TCACGATCTGTCCCGATCAAG 59.595 52.381 0.00 0.00 39.78 3.02
80 81 1.470051 TCACGATCTGTCCCGATCAA 58.530 50.000 0.00 0.00 39.78 2.57
81 82 1.405463 CTTCACGATCTGTCCCGATCA 59.595 52.381 0.00 0.00 39.78 2.92
82 83 1.269309 CCTTCACGATCTGTCCCGATC 60.269 57.143 0.00 0.00 37.13 3.69
83 84 0.747255 CCTTCACGATCTGTCCCGAT 59.253 55.000 0.00 0.00 0.00 4.18
84 85 0.611062 ACCTTCACGATCTGTCCCGA 60.611 55.000 0.00 0.00 0.00 5.14
85 86 0.458543 CACCTTCACGATCTGTCCCG 60.459 60.000 0.00 0.00 0.00 5.14
86 87 0.608640 ACACCTTCACGATCTGTCCC 59.391 55.000 0.00 0.00 0.00 4.46
87 88 2.731341 CGTACACCTTCACGATCTGTCC 60.731 54.545 0.00 0.00 40.56 4.02
88 89 2.161012 TCGTACACCTTCACGATCTGTC 59.839 50.000 0.00 0.00 41.89 3.51
89 90 2.156917 TCGTACACCTTCACGATCTGT 58.843 47.619 0.00 0.00 41.89 3.41
90 91 2.913777 TCGTACACCTTCACGATCTG 57.086 50.000 0.00 0.00 41.89 2.90
94 95 2.493035 TGTAGTCGTACACCTTCACGA 58.507 47.619 0.00 0.00 44.32 4.35
95 96 2.975410 TGTAGTCGTACACCTTCACG 57.025 50.000 0.00 0.00 34.02 4.35
96 97 4.430137 TGATGTAGTCGTACACCTTCAC 57.570 45.455 0.00 0.00 42.06 3.18
97 98 4.321452 GGTTGATGTAGTCGTACACCTTCA 60.321 45.833 0.00 0.00 42.06 3.02
175 176 6.372937 CCATGAAGATGTATAGCTACGAGAGA 59.627 42.308 0.00 0.00 0.00 3.10
195 196 3.954258 ACACACACGAGATCTATCCATGA 59.046 43.478 0.00 0.00 0.00 3.07
229 230 2.158475 AGGGAAAGTTGCATGGAGAACA 60.158 45.455 0.00 0.00 0.00 3.18
233 234 3.191371 GTGTTAGGGAAAGTTGCATGGAG 59.809 47.826 0.00 0.00 0.00 3.86
236 237 4.582701 TTGTGTTAGGGAAAGTTGCATG 57.417 40.909 0.00 0.00 0.00 4.06
244 245 4.623002 GCGGAAAATTTGTGTTAGGGAAA 58.377 39.130 0.00 0.00 0.00 3.13
250 251 1.609555 AGCCGCGGAAAATTTGTGTTA 59.390 42.857 33.48 0.00 0.00 2.41
275 276 4.562394 CACTTATATTGTTTTTGCGGCTGG 59.438 41.667 0.00 0.00 0.00 4.85
340 341 6.369005 CCTATGAATGATGCAAGATTCGTTC 58.631 40.000 16.67 14.16 38.03 3.95
422 423 8.598075 GCATGAATCAATCAAAAATTGTAGGTC 58.402 33.333 0.00 0.00 42.54 3.85
520 523 7.500141 ACCAAAAACATGCAGAAAAGAGTAAT 58.500 30.769 0.00 0.00 0.00 1.89
578 581 5.908240 ATTTATTGTTTTGCGAATCGACG 57.092 34.783 6.91 0.00 0.00 5.12
607 610 1.838568 GCCCACGTGACGAAGGTTTC 61.839 60.000 19.30 1.33 0.00 2.78
620 623 2.014128 CACCTTATAAGTTGGCCCACG 58.986 52.381 11.50 0.00 0.00 4.94
651 654 4.202493 GGAACTACTTTACCACCTTCCCAA 60.202 45.833 0.00 0.00 0.00 4.12
676 679 2.353011 GGACAACGTTGGTATCTTCGGA 60.353 50.000 30.34 0.00 0.00 4.55
716 719 7.722363 TCAAAGGGGTCAAACTAGAAAATTTC 58.278 34.615 0.00 0.00 0.00 2.17
813 817 5.070047 ACGTTTGGATGGGTAGATAAGTAGG 59.930 44.000 0.00 0.00 0.00 3.18
818 822 3.942748 GCAACGTTTGGATGGGTAGATAA 59.057 43.478 0.00 0.00 0.00 1.75
846 850 2.921221 TGGGGAATTTATTTTGGGCCA 58.079 42.857 0.00 0.00 0.00 5.36
950 954 3.033909 GGAAAATTGGGGATCAGGGAAG 58.966 50.000 0.00 0.00 0.00 3.46
955 959 2.110578 GGTGGGAAAATTGGGGATCAG 58.889 52.381 0.00 0.00 0.00 2.90
1076 1080 1.549243 TTGCGACTCCATGGCCACTA 61.549 55.000 8.16 0.00 0.00 2.74
1077 1081 2.410322 TTTGCGACTCCATGGCCACT 62.410 55.000 8.16 0.00 0.00 4.00
1219 1224 4.043310 TCCTCCTCCAAAATCAGATGTGTT 59.957 41.667 0.00 0.00 0.00 3.32
1318 1323 3.104512 TGGTGTCCTTATCGACCTTGAT 58.895 45.455 0.00 0.00 31.35 2.57
1329 1334 4.283337 TGAGGTCGAATATGGTGTCCTTA 58.717 43.478 0.00 0.00 0.00 2.69
1374 1379 6.055588 AGAAAGTCAAGGAACAAATCGAAGA 58.944 36.000 0.00 0.00 45.75 2.87
1535 1542 6.317893 CCATTGTGTACCTAACCTAATCCAAC 59.682 42.308 0.00 0.00 0.00 3.77
1587 1595 2.164219 ACCGCTTTCTACATTGCCAATG 59.836 45.455 15.71 15.71 44.48 2.82
1594 1602 1.274167 TGGTCGACCGCTTTCTACATT 59.726 47.619 28.70 0.00 39.43 2.71
1608 1616 3.308035 AGGGTGAGTATGTATGGTCGA 57.692 47.619 0.00 0.00 0.00 4.20
1788 1796 6.593978 CAAGTTATCAAAGAGAAACCACTCG 58.406 40.000 0.00 0.00 41.25 4.18
1827 1836 5.468540 AAGACCATATATTGCTCTGCGTA 57.531 39.130 0.00 0.00 0.00 4.42
2159 2178 8.586879 TTCATTGTTGACATATGGACCAATTA 57.413 30.769 7.80 0.00 0.00 1.40
2160 2179 7.479352 TTCATTGTTGACATATGGACCAATT 57.521 32.000 7.80 0.00 0.00 2.32
2162 2181 6.627731 GCATTCATTGTTGACATATGGACCAA 60.628 38.462 7.80 5.61 0.00 3.67
2290 2313 8.622157 TGGTATCTAAAAGACTAGTTGAGATCG 58.378 37.037 0.00 0.00 0.00 3.69
2302 2325 8.008513 TGGATCAGTAGTGGTATCTAAAAGAC 57.991 38.462 0.00 0.00 0.00 3.01
2320 2343 5.816258 GGCATCTGTATATGACATGGATCAG 59.184 44.000 0.00 2.44 37.45 2.90
2334 2357 6.723515 TGCTAGATAGAAGAAGGCATCTGTAT 59.276 38.462 0.00 0.00 38.79 2.29
2338 2361 6.465948 CAATGCTAGATAGAAGAAGGCATCT 58.534 40.000 0.00 0.00 41.32 2.90
2339 2362 5.642919 CCAATGCTAGATAGAAGAAGGCATC 59.357 44.000 0.00 0.00 37.85 3.91
2427 2450 7.820872 CACTTCTCACATGGACATGCATATATA 59.179 37.037 11.96 0.00 42.39 0.86
2428 2451 6.653740 CACTTCTCACATGGACATGCATATAT 59.346 38.462 11.96 0.00 42.39 0.86
2429 2452 5.993441 CACTTCTCACATGGACATGCATATA 59.007 40.000 11.96 0.00 42.39 0.86
2430 2453 4.820173 CACTTCTCACATGGACATGCATAT 59.180 41.667 11.96 0.00 42.39 1.78
2503 2526 8.677300 TGCAAACAAGATCAGGATTTTATAGTC 58.323 33.333 0.00 0.00 0.00 2.59
2733 2760 6.835174 AGATTAGCTCAGATGATAAAGGCAA 58.165 36.000 0.00 0.00 0.00 4.52
2802 2829 2.932614 AGTCAAGCAATGATACGCAGAC 59.067 45.455 0.00 0.00 40.97 3.51
2857 2884 5.762045 CATTCATCATCCGGTAATTTGGAC 58.238 41.667 0.00 0.00 37.02 4.02
2908 2953 5.065218 GCTACATGGGTTTAGATGACAAGTG 59.935 44.000 0.00 0.00 0.00 3.16
2909 2954 5.045578 AGCTACATGGGTTTAGATGACAAGT 60.046 40.000 0.00 0.00 0.00 3.16
2920 2965 3.968265 AGTGCATAAGCTACATGGGTTT 58.032 40.909 9.58 0.00 42.74 3.27
3094 3139 6.087522 CGACAAACTAAAACACAAACCAAGA 58.912 36.000 0.00 0.00 0.00 3.02
3099 3144 4.167268 TGGCGACAAACTAAAACACAAAC 58.833 39.130 0.00 0.00 37.44 2.93
3120 3165 9.778741 ACATATACCACCTACATAGATGTTTTG 57.221 33.333 0.00 0.00 41.97 2.44
3162 3207 1.065418 AGAGGGAAGCATGGGTTTACG 60.065 52.381 0.00 0.00 0.00 3.18
3170 3215 1.446907 GTGTGTCAGAGGGAAGCATG 58.553 55.000 0.00 0.00 0.00 4.06
3951 4011 5.622770 AGCGTAAACTTTAAAGGGTGATG 57.377 39.130 19.14 6.74 0.00 3.07
3952 4012 6.470278 ACTAGCGTAAACTTTAAAGGGTGAT 58.530 36.000 19.14 5.83 0.00 3.06
3953 4013 5.857268 ACTAGCGTAAACTTTAAAGGGTGA 58.143 37.500 19.14 0.00 0.00 4.02
3954 4014 7.838771 ATACTAGCGTAAACTTTAAAGGGTG 57.161 36.000 19.14 5.67 0.00 4.61
3955 4015 9.591792 CTTATACTAGCGTAAACTTTAAAGGGT 57.408 33.333 19.14 8.85 0.00 4.34
3956 4016 9.807649 TCTTATACTAGCGTAAACTTTAAAGGG 57.192 33.333 19.14 4.53 0.00 3.95
4039 4099 9.729023 CAATGAACTCCGTAAAATGCATAAATA 57.271 29.630 0.00 0.00 0.00 1.40
4040 4100 7.222611 GCAATGAACTCCGTAAAATGCATAAAT 59.777 33.333 0.00 0.00 0.00 1.40
4041 4101 6.529829 GCAATGAACTCCGTAAAATGCATAAA 59.470 34.615 0.00 0.00 0.00 1.40
4042 4102 6.033341 GCAATGAACTCCGTAAAATGCATAA 58.967 36.000 0.00 0.00 0.00 1.90
4043 4103 5.124617 TGCAATGAACTCCGTAAAATGCATA 59.875 36.000 0.00 0.00 36.46 3.14
4044 4104 4.082300 TGCAATGAACTCCGTAAAATGCAT 60.082 37.500 0.00 0.00 36.46 3.96
4045 4105 3.254411 TGCAATGAACTCCGTAAAATGCA 59.746 39.130 0.00 0.00 38.78 3.96
4046 4106 3.832276 TGCAATGAACTCCGTAAAATGC 58.168 40.909 0.00 0.00 0.00 3.56
4047 4107 5.682862 GCTATGCAATGAACTCCGTAAAATG 59.317 40.000 0.00 0.00 0.00 2.32
4048 4108 5.590259 AGCTATGCAATGAACTCCGTAAAAT 59.410 36.000 0.00 0.00 0.00 1.82
4049 4109 4.941263 AGCTATGCAATGAACTCCGTAAAA 59.059 37.500 0.00 0.00 0.00 1.52
4050 4110 4.513442 AGCTATGCAATGAACTCCGTAAA 58.487 39.130 0.00 0.00 0.00 2.01
4051 4111 4.137116 AGCTATGCAATGAACTCCGTAA 57.863 40.909 0.00 0.00 0.00 3.18
4052 4112 3.819564 AGCTATGCAATGAACTCCGTA 57.180 42.857 0.00 0.00 0.00 4.02
4053 4113 2.698855 AGCTATGCAATGAACTCCGT 57.301 45.000 0.00 0.00 0.00 4.69
4054 4114 4.361451 AAAAGCTATGCAATGAACTCCG 57.639 40.909 0.00 0.00 0.00 4.63
4055 4115 5.277047 GCTAAAAGCTATGCAATGAACTCC 58.723 41.667 0.00 0.00 38.45 3.85
4056 4116 5.067023 AGGCTAAAAGCTATGCAATGAACTC 59.933 40.000 0.00 0.00 41.99 3.01
4057 4117 4.952335 AGGCTAAAAGCTATGCAATGAACT 59.048 37.500 0.00 0.00 41.99 3.01
4058 4118 5.254339 AGGCTAAAAGCTATGCAATGAAC 57.746 39.130 0.00 0.00 41.99 3.18
4059 4119 5.418524 TCAAGGCTAAAAGCTATGCAATGAA 59.581 36.000 0.00 0.00 41.99 2.57
4060 4120 4.949238 TCAAGGCTAAAAGCTATGCAATGA 59.051 37.500 0.00 0.00 41.99 2.57
4061 4121 5.252969 TCAAGGCTAAAAGCTATGCAATG 57.747 39.130 0.00 0.00 41.99 2.82
4062 4122 6.475596 AATCAAGGCTAAAAGCTATGCAAT 57.524 33.333 0.00 0.00 41.99 3.56
4063 4123 5.920193 AATCAAGGCTAAAAGCTATGCAA 57.080 34.783 0.00 0.00 41.99 4.08
4064 4124 6.122277 ACTAATCAAGGCTAAAAGCTATGCA 58.878 36.000 0.00 0.00 41.99 3.96
4065 4125 6.625873 ACTAATCAAGGCTAAAAGCTATGC 57.374 37.500 0.00 0.00 41.99 3.14
4066 4126 9.860898 AAAAACTAATCAAGGCTAAAAGCTATG 57.139 29.630 0.00 0.00 41.99 2.23
4095 4155 9.278978 ACAAACACAATAAAACAAAGGAAAACT 57.721 25.926 0.00 0.00 0.00 2.66
4098 4158 9.372369 CCTACAAACACAATAAAACAAAGGAAA 57.628 29.630 0.00 0.00 0.00 3.13
4099 4159 8.532819 ACCTACAAACACAATAAAACAAAGGAA 58.467 29.630 0.00 0.00 0.00 3.36
4100 4160 7.976734 CACCTACAAACACAATAAAACAAAGGA 59.023 33.333 0.00 0.00 0.00 3.36
4101 4161 7.762159 ACACCTACAAACACAATAAAACAAAGG 59.238 33.333 0.00 0.00 0.00 3.11
4102 4162 8.696410 ACACCTACAAACACAATAAAACAAAG 57.304 30.769 0.00 0.00 0.00 2.77
4105 4165 9.737427 CATTACACCTACAAACACAATAAAACA 57.263 29.630 0.00 0.00 0.00 2.83
4106 4166 9.187455 CCATTACACCTACAAACACAATAAAAC 57.813 33.333 0.00 0.00 0.00 2.43
4107 4167 9.132923 TCCATTACACCTACAAACACAATAAAA 57.867 29.630 0.00 0.00 0.00 1.52
4108 4168 8.693120 TCCATTACACCTACAAACACAATAAA 57.307 30.769 0.00 0.00 0.00 1.40
4109 4169 7.940137 ACTCCATTACACCTACAAACACAATAA 59.060 33.333 0.00 0.00 0.00 1.40
4110 4170 7.455058 ACTCCATTACACCTACAAACACAATA 58.545 34.615 0.00 0.00 0.00 1.90
4111 4171 6.303839 ACTCCATTACACCTACAAACACAAT 58.696 36.000 0.00 0.00 0.00 2.71
4112 4172 5.686753 ACTCCATTACACCTACAAACACAA 58.313 37.500 0.00 0.00 0.00 3.33
4113 4173 5.298989 ACTCCATTACACCTACAAACACA 57.701 39.130 0.00 0.00 0.00 3.72
4114 4174 5.180680 GGAACTCCATTACACCTACAAACAC 59.819 44.000 0.00 0.00 35.64 3.32
4115 4175 5.163184 TGGAACTCCATTACACCTACAAACA 60.163 40.000 0.00 0.00 42.01 2.83
4116 4176 5.310451 TGGAACTCCATTACACCTACAAAC 58.690 41.667 0.00 0.00 42.01 2.93
4117 4177 5.570205 TGGAACTCCATTACACCTACAAA 57.430 39.130 0.00 0.00 42.01 2.83
4131 4191 3.350219 TTGCTAAGTCCATGGAACTCC 57.650 47.619 18.20 3.64 0.00 3.85
4132 4192 5.904362 AATTTGCTAAGTCCATGGAACTC 57.096 39.130 18.20 4.07 0.00 3.01
4133 4193 7.775053 TTTAATTTGCTAAGTCCATGGAACT 57.225 32.000 18.20 13.27 0.00 3.01
4134 4194 7.545615 CCTTTTAATTTGCTAAGTCCATGGAAC 59.454 37.037 18.20 11.04 0.00 3.62
4135 4195 7.310361 CCCTTTTAATTTGCTAAGTCCATGGAA 60.310 37.037 18.20 0.00 0.00 3.53
4136 4196 6.154363 CCCTTTTAATTTGCTAAGTCCATGGA 59.846 38.462 11.44 11.44 0.00 3.41
4137 4197 6.154363 TCCCTTTTAATTTGCTAAGTCCATGG 59.846 38.462 4.97 4.97 0.00 3.66
4138 4198 7.035612 GTCCCTTTTAATTTGCTAAGTCCATG 58.964 38.462 0.00 0.00 0.00 3.66
4139 4199 6.154534 GGTCCCTTTTAATTTGCTAAGTCCAT 59.845 38.462 0.00 0.00 0.00 3.41
4140 4200 5.479027 GGTCCCTTTTAATTTGCTAAGTCCA 59.521 40.000 0.00 0.00 0.00 4.02
4141 4201 5.479027 TGGTCCCTTTTAATTTGCTAAGTCC 59.521 40.000 0.00 0.00 0.00 3.85
4142 4202 6.584185 TGGTCCCTTTTAATTTGCTAAGTC 57.416 37.500 0.00 0.00 0.00 3.01
4143 4203 6.553476 ACTTGGTCCCTTTTAATTTGCTAAGT 59.447 34.615 0.00 0.00 0.00 2.24
4144 4204 6.993079 ACTTGGTCCCTTTTAATTTGCTAAG 58.007 36.000 0.00 0.00 0.00 2.18
4145 4205 6.987403 ACTTGGTCCCTTTTAATTTGCTAA 57.013 33.333 0.00 0.00 0.00 3.09
4146 4206 6.987403 AACTTGGTCCCTTTTAATTTGCTA 57.013 33.333 0.00 0.00 0.00 3.49
4147 4207 5.887214 AACTTGGTCCCTTTTAATTTGCT 57.113 34.783 0.00 0.00 0.00 3.91
4148 4208 5.238432 CCAAACTTGGTCCCTTTTAATTTGC 59.762 40.000 0.00 0.00 43.43 3.68
4149 4209 6.859420 CCAAACTTGGTCCCTTTTAATTTG 57.141 37.500 0.00 0.00 43.43 2.32
4153 4213 6.975979 TGGCCCAAACTTGGTCCCTTTTAA 62.976 45.833 6.11 0.00 45.67 1.52
4154 4214 5.562355 TGGCCCAAACTTGGTCCCTTTTA 62.562 47.826 6.11 0.00 45.67 1.52
4155 4215 4.913423 TGGCCCAAACTTGGTCCCTTTT 62.913 50.000 6.11 0.00 45.67 2.27
4156 4216 3.457587 TGGCCCAAACTTGGTCCCTTT 62.458 52.381 6.11 0.00 45.67 3.11
4157 4217 1.955458 TGGCCCAAACTTGGTCCCTT 61.955 55.000 6.11 0.00 45.67 3.95
4158 4218 1.955458 TTGGCCCAAACTTGGTCCCT 61.955 55.000 6.11 0.00 45.67 4.20
4159 4219 1.051556 TTTGGCCCAAACTTGGTCCC 61.052 55.000 4.38 7.17 45.67 4.46
4160 4220 0.105964 GTTTGGCCCAAACTTGGTCC 59.894 55.000 28.08 4.68 46.84 4.46
4161 4221 3.678921 GTTTGGCCCAAACTTGGTC 57.321 52.632 28.08 4.40 46.84 4.02
4168 4228 0.407918 CCTCCTAGGTTTGGCCCAAA 59.592 55.000 4.38 4.38 38.26 3.28
4169 4229 2.083715 CCTCCTAGGTTTGGCCCAA 58.916 57.895 9.08 0.00 38.26 4.12
4170 4230 3.835134 CCTCCTAGGTTTGGCCCA 58.165 61.111 9.08 0.00 38.26 5.36
4181 4241 8.558312 AATATCAACTATATCGGAGACCTCCTA 58.442 37.037 13.62 3.74 42.51 2.94
4182 4242 7.415086 AATATCAACTATATCGGAGACCTCCT 58.585 38.462 13.62 0.00 42.51 3.69
4183 4243 7.648039 AATATCAACTATATCGGAGACCTCC 57.352 40.000 5.99 5.99 42.51 4.30
4197 4257 8.141909 CGGAGACCAGACAAATAATATCAACTA 58.858 37.037 0.00 0.00 0.00 2.24
4198 4258 6.986817 CGGAGACCAGACAAATAATATCAACT 59.013 38.462 0.00 0.00 0.00 3.16
4199 4259 6.984474 TCGGAGACCAGACAAATAATATCAAC 59.016 38.462 0.00 0.00 0.00 3.18
4200 4260 7.119709 TCGGAGACCAGACAAATAATATCAA 57.880 36.000 0.00 0.00 0.00 2.57
4201 4261 6.724893 TCGGAGACCAGACAAATAATATCA 57.275 37.500 0.00 0.00 0.00 2.15
4202 4262 7.169982 CAGTTCGGAGACCAGACAAATAATATC 59.830 40.741 0.00 0.00 34.32 1.63
4203 4263 6.986817 CAGTTCGGAGACCAGACAAATAATAT 59.013 38.462 0.00 0.00 34.32 1.28
4204 4264 6.338146 CAGTTCGGAGACCAGACAAATAATA 58.662 40.000 0.00 0.00 34.32 0.98
4205 4265 5.178797 CAGTTCGGAGACCAGACAAATAAT 58.821 41.667 0.00 0.00 34.32 1.28
4206 4266 4.562757 CCAGTTCGGAGACCAGACAAATAA 60.563 45.833 0.00 0.00 36.56 1.40
4207 4267 3.056107 CCAGTTCGGAGACCAGACAAATA 60.056 47.826 0.00 0.00 36.56 1.40
4208 4268 2.289694 CCAGTTCGGAGACCAGACAAAT 60.290 50.000 0.00 0.00 36.56 2.32
4209 4269 1.070134 CCAGTTCGGAGACCAGACAAA 59.930 52.381 0.00 0.00 36.56 2.83
4210 4270 0.679505 CCAGTTCGGAGACCAGACAA 59.320 55.000 0.00 0.00 36.56 3.18
4211 4271 1.816863 GCCAGTTCGGAGACCAGACA 61.817 60.000 0.00 0.00 36.56 3.41
4212 4272 1.079750 GCCAGTTCGGAGACCAGAC 60.080 63.158 0.00 0.00 36.56 3.51
4213 4273 0.039180 TAGCCAGTTCGGAGACCAGA 59.961 55.000 0.00 0.00 36.56 3.86
4214 4274 0.457851 CTAGCCAGTTCGGAGACCAG 59.542 60.000 0.00 0.00 36.56 4.00
4215 4275 0.251653 ACTAGCCAGTTCGGAGACCA 60.252 55.000 0.00 0.00 36.56 4.02
4216 4276 0.173708 CACTAGCCAGTTCGGAGACC 59.826 60.000 0.00 0.00 36.56 3.85
4217 4277 1.133407 CTCACTAGCCAGTTCGGAGAC 59.867 57.143 0.00 0.00 36.56 3.36
4218 4278 1.464734 CTCACTAGCCAGTTCGGAGA 58.535 55.000 0.00 0.00 36.56 3.71
4219 4279 0.457851 CCTCACTAGCCAGTTCGGAG 59.542 60.000 0.00 0.00 36.56 4.63
4220 4280 0.970937 CCCTCACTAGCCAGTTCGGA 60.971 60.000 0.00 0.00 36.56 4.55
4221 4281 1.258445 ACCCTCACTAGCCAGTTCGG 61.258 60.000 0.00 0.00 30.46 4.30
4222 4282 1.134560 GTACCCTCACTAGCCAGTTCG 59.865 57.143 0.00 0.00 30.46 3.95
4223 4283 1.481363 GGTACCCTCACTAGCCAGTTC 59.519 57.143 0.00 0.00 30.46 3.01
4224 4284 1.078989 AGGTACCCTCACTAGCCAGTT 59.921 52.381 8.74 0.00 30.46 3.16
4225 4285 0.711184 AGGTACCCTCACTAGCCAGT 59.289 55.000 8.74 0.00 34.42 4.00
4226 4286 1.867363 AAGGTACCCTCACTAGCCAG 58.133 55.000 8.74 0.00 30.89 4.85
4227 4287 2.185387 GAAAGGTACCCTCACTAGCCA 58.815 52.381 8.74 0.00 30.89 4.75
4228 4288 2.185387 TGAAAGGTACCCTCACTAGCC 58.815 52.381 8.74 0.00 30.89 3.93
4229 4289 3.975168 TTGAAAGGTACCCTCACTAGC 57.025 47.619 8.74 0.00 30.89 3.42
4230 4290 6.940298 TGAAATTTGAAAGGTACCCTCACTAG 59.060 38.462 8.74 0.00 30.89 2.57
4231 4291 6.843752 TGAAATTTGAAAGGTACCCTCACTA 58.156 36.000 8.74 3.49 30.89 2.74
4232 4292 5.701224 TGAAATTTGAAAGGTACCCTCACT 58.299 37.500 8.74 0.00 30.89 3.41
4233 4293 6.208599 TCATGAAATTTGAAAGGTACCCTCAC 59.791 38.462 8.74 0.71 30.89 3.51
4234 4294 6.310941 TCATGAAATTTGAAAGGTACCCTCA 58.689 36.000 8.74 9.31 30.89 3.86
4235 4295 6.659242 TCTCATGAAATTTGAAAGGTACCCTC 59.341 38.462 8.74 6.46 30.89 4.30
4236 4296 6.552008 TCTCATGAAATTTGAAAGGTACCCT 58.448 36.000 8.74 0.00 33.87 4.34
4237 4297 6.834168 TCTCATGAAATTTGAAAGGTACCC 57.166 37.500 8.74 0.00 0.00 3.69
4238 4298 8.141268 TGTTTCTCATGAAATTTGAAAGGTACC 58.859 33.333 2.73 2.73 43.14 3.34
4239 4299 9.696917 ATGTTTCTCATGAAATTTGAAAGGTAC 57.303 29.630 7.18 0.00 43.14 3.34
4241 4301 9.918630 CTATGTTTCTCATGAAATTTGAAAGGT 57.081 29.630 7.18 3.34 43.14 3.50
4242 4302 9.918630 ACTATGTTTCTCATGAAATTTGAAAGG 57.081 29.630 7.18 2.96 43.14 3.11
4244 4304 9.912634 GGACTATGTTTCTCATGAAATTTGAAA 57.087 29.630 0.00 0.00 43.14 2.69
4245 4305 8.236586 CGGACTATGTTTCTCATGAAATTTGAA 58.763 33.333 0.00 0.00 43.14 2.69
4246 4306 7.390440 ACGGACTATGTTTCTCATGAAATTTGA 59.610 33.333 0.00 0.00 43.14 2.69
4247 4307 7.530010 ACGGACTATGTTTCTCATGAAATTTG 58.470 34.615 0.00 0.00 43.14 2.32
4248 4308 7.687941 ACGGACTATGTTTCTCATGAAATTT 57.312 32.000 0.00 0.00 43.14 1.82
4249 4309 7.687941 AACGGACTATGTTTCTCATGAAATT 57.312 32.000 0.00 0.00 43.14 1.82
4250 4310 7.530010 CAAACGGACTATGTTTCTCATGAAAT 58.470 34.615 0.00 0.00 43.14 2.17
4251 4311 6.567701 GCAAACGGACTATGTTTCTCATGAAA 60.568 38.462 0.00 0.00 37.44 2.69
4252 4312 5.106712 GCAAACGGACTATGTTTCTCATGAA 60.107 40.000 0.00 0.00 37.44 2.57
4253 4313 4.391830 GCAAACGGACTATGTTTCTCATGA 59.608 41.667 0.00 0.00 37.44 3.07
4254 4314 4.393062 AGCAAACGGACTATGTTTCTCATG 59.607 41.667 0.00 0.00 37.44 3.07
4255 4315 4.579869 AGCAAACGGACTATGTTTCTCAT 58.420 39.130 0.00 0.00 37.44 2.90
4256 4316 4.002906 AGCAAACGGACTATGTTTCTCA 57.997 40.909 0.00 0.00 37.44 3.27
4257 4317 5.234543 GGATAGCAAACGGACTATGTTTCTC 59.765 44.000 0.00 0.00 37.44 2.87
4258 4318 5.116882 GGATAGCAAACGGACTATGTTTCT 58.883 41.667 0.00 0.00 37.44 2.52
4259 4319 4.873827 TGGATAGCAAACGGACTATGTTTC 59.126 41.667 0.00 0.00 37.44 2.78
4260 4320 4.839121 TGGATAGCAAACGGACTATGTTT 58.161 39.130 0.00 0.00 40.01 2.83
4261 4321 4.481368 TGGATAGCAAACGGACTATGTT 57.519 40.909 0.00 0.00 0.00 2.71
4262 4322 4.481368 TTGGATAGCAAACGGACTATGT 57.519 40.909 0.00 0.00 0.00 2.29
4263 4323 5.156804 GTTTGGATAGCAAACGGACTATG 57.843 43.478 0.00 0.00 33.65 2.23
4271 4331 3.907894 TTGGACGTTTGGATAGCAAAC 57.092 42.857 0.00 0.00 38.69 2.93
4272 4332 6.767524 ATATTTGGACGTTTGGATAGCAAA 57.232 33.333 0.00 0.00 0.00 3.68
4273 4333 6.151985 ACAATATTTGGACGTTTGGATAGCAA 59.848 34.615 0.00 0.00 34.12 3.91
4274 4334 5.650266 ACAATATTTGGACGTTTGGATAGCA 59.350 36.000 0.00 0.00 34.12 3.49
4275 4335 5.971202 CACAATATTTGGACGTTTGGATAGC 59.029 40.000 0.00 0.00 34.12 2.97
4276 4336 6.494842 CCACAATATTTGGACGTTTGGATAG 58.505 40.000 9.73 0.00 36.02 2.08
4277 4337 5.163602 GCCACAATATTTGGACGTTTGGATA 60.164 40.000 16.30 0.00 36.02 2.59
4278 4338 4.381505 GCCACAATATTTGGACGTTTGGAT 60.382 41.667 16.30 0.00 36.02 3.41
4279 4339 3.057174 GCCACAATATTTGGACGTTTGGA 60.057 43.478 16.30 0.00 36.02 3.53
4280 4340 3.249917 GCCACAATATTTGGACGTTTGG 58.750 45.455 16.30 0.00 36.02 3.28
4281 4341 3.672867 GTGCCACAATATTTGGACGTTTG 59.327 43.478 16.30 0.00 36.02 2.93
4282 4342 3.572255 AGTGCCACAATATTTGGACGTTT 59.428 39.130 16.30 0.00 36.02 3.60
4283 4343 3.153919 AGTGCCACAATATTTGGACGTT 58.846 40.909 16.30 1.74 36.02 3.99
4284 4344 2.790433 AGTGCCACAATATTTGGACGT 58.210 42.857 16.30 0.00 36.02 4.34
4285 4345 3.938963 ACTAGTGCCACAATATTTGGACG 59.061 43.478 16.30 0.00 36.02 4.79
4286 4346 5.007724 GCTACTAGTGCCACAATATTTGGAC 59.992 44.000 5.39 12.18 36.02 4.02
4287 4347 5.123227 GCTACTAGTGCCACAATATTTGGA 58.877 41.667 5.39 4.08 36.02 3.53
4288 4348 5.424121 GCTACTAGTGCCACAATATTTGG 57.576 43.478 5.39 10.57 37.17 3.28
4299 4359 2.678471 TTTAACCGGCTACTAGTGCC 57.322 50.000 20.22 20.22 46.42 5.01
4300 4360 6.856135 ATTATTTTAACCGGCTACTAGTGC 57.144 37.500 5.39 7.18 0.00 4.40
4303 4363 9.853921 CGTTTAATTATTTTAACCGGCTACTAG 57.146 33.333 0.00 0.00 0.00 2.57
4304 4364 9.377312 ACGTTTAATTATTTTAACCGGCTACTA 57.623 29.630 0.00 0.00 0.00 1.82
4305 4365 8.267620 ACGTTTAATTATTTTAACCGGCTACT 57.732 30.769 0.00 0.00 0.00 2.57
4306 4366 8.894409 AACGTTTAATTATTTTAACCGGCTAC 57.106 30.769 0.00 0.00 0.00 3.58
4307 4367 9.339492 CAAACGTTTAATTATTTTAACCGGCTA 57.661 29.630 14.20 0.00 0.00 3.93
4308 4368 7.148771 GCAAACGTTTAATTATTTTAACCGGCT 60.149 33.333 14.20 0.00 0.00 5.52
4309 4369 6.949327 GCAAACGTTTAATTATTTTAACCGGC 59.051 34.615 14.20 3.22 0.00 6.13
4310 4370 8.004585 TGCAAACGTTTAATTATTTTAACCGG 57.995 30.769 14.20 0.00 0.00 5.28
4311 4371 9.845305 TTTGCAAACGTTTAATTATTTTAACCG 57.155 25.926 14.20 0.00 0.00 4.44
4327 4387 9.657121 CCAACAATAAATTTTATTTGCAAACGT 57.343 25.926 15.41 1.77 0.00 3.99
4328 4388 9.111702 CCCAACAATAAATTTTATTTGCAAACG 57.888 29.630 15.41 2.74 0.00 3.60
4329 4389 9.958234 ACCCAACAATAAATTTTATTTGCAAAC 57.042 25.926 15.41 0.00 0.00 2.93
4330 4390 9.956720 CACCCAACAATAAATTTTATTTGCAAA 57.043 25.926 15.44 15.44 0.00 3.68
4331 4391 9.342308 TCACCCAACAATAAATTTTATTTGCAA 57.658 25.926 10.92 0.00 0.00 4.08
4332 4392 8.908786 TCACCCAACAATAAATTTTATTTGCA 57.091 26.923 10.92 0.00 0.00 4.08
4338 4398 9.233649 AGACGTATCACCCAACAATAAATTTTA 57.766 29.630 0.00 0.00 0.00 1.52
4339 4399 8.026607 CAGACGTATCACCCAACAATAAATTTT 58.973 33.333 0.00 0.00 0.00 1.82
4340 4400 7.535139 CAGACGTATCACCCAACAATAAATTT 58.465 34.615 0.00 0.00 0.00 1.82
4341 4401 6.404293 GCAGACGTATCACCCAACAATAAATT 60.404 38.462 0.00 0.00 0.00 1.82
4342 4402 5.065988 GCAGACGTATCACCCAACAATAAAT 59.934 40.000 0.00 0.00 0.00 1.40
4343 4403 4.393680 GCAGACGTATCACCCAACAATAAA 59.606 41.667 0.00 0.00 0.00 1.40
4344 4404 3.936453 GCAGACGTATCACCCAACAATAA 59.064 43.478 0.00 0.00 0.00 1.40
4345 4405 3.055747 TGCAGACGTATCACCCAACAATA 60.056 43.478 0.00 0.00 0.00 1.90
4346 4406 2.290008 TGCAGACGTATCACCCAACAAT 60.290 45.455 0.00 0.00 0.00 2.71
4347 4407 1.070914 TGCAGACGTATCACCCAACAA 59.929 47.619 0.00 0.00 0.00 2.83
4348 4408 0.682292 TGCAGACGTATCACCCAACA 59.318 50.000 0.00 0.00 0.00 3.33
4349 4409 1.463444 GTTGCAGACGTATCACCCAAC 59.537 52.381 0.00 0.00 0.00 3.77
4350 4410 1.070914 TGTTGCAGACGTATCACCCAA 59.929 47.619 0.00 0.00 0.00 4.12
4351 4411 0.682292 TGTTGCAGACGTATCACCCA 59.318 50.000 0.00 0.00 0.00 4.51
4352 4412 2.024176 ATGTTGCAGACGTATCACCC 57.976 50.000 0.00 0.00 0.00 4.61
4359 4419 9.935682 CAAAAATTATAGATATGTTGCAGACGT 57.064 29.630 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.