Multiple sequence alignment - TraesCS7D01G544900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G544900 chr7D 100.000 4297 0 0 1 4297 632351585 632355881 0.000000e+00 7936.0
1 TraesCS7D01G544900 chr7D 95.543 3949 159 12 15 3954 632359989 632363929 0.000000e+00 6301.0
2 TraesCS7D01G544900 chr7D 92.174 345 27 0 3953 4297 267302080 267301736 4.990000e-134 488.0
3 TraesCS7D01G544900 chr7B 92.341 3708 238 23 170 3856 744481614 744485296 0.000000e+00 5232.0
4 TraesCS7D01G544900 chr7B 92.268 3699 249 22 170 3856 744504117 744507790 0.000000e+00 5212.0
5 TraesCS7D01G544900 chr7B 92.782 3117 188 19 752 3856 744460477 744463568 0.000000e+00 4475.0
6 TraesCS7D01G544900 chr7B 91.976 2480 173 13 170 2644 744443210 744445668 0.000000e+00 3454.0
7 TraesCS7D01G544900 chr7B 93.484 1642 96 7 2223 3856 744494560 744496198 0.000000e+00 2429.0
8 TraesCS7D01G544900 chr7B 91.573 1697 132 10 170 1862 744492859 744494548 0.000000e+00 2331.0
9 TraesCS7D01G544900 chr7B 91.992 999 58 9 2867 3856 744445677 744446662 0.000000e+00 1382.0
10 TraesCS7D01G544900 chr7B 87.234 47 6 0 329 375 626613368 626613414 2.000000e-03 54.7
11 TraesCS7D01G544900 chr7A 92.411 2675 175 15 170 2837 735378532 735375879 0.000000e+00 3790.0
12 TraesCS7D01G544900 chr7A 92.411 2675 175 15 170 2837 735396599 735393946 0.000000e+00 3790.0
13 TraesCS7D01G544900 chr7A 92.508 2616 170 13 170 2780 735360306 735357712 0.000000e+00 3722.0
14 TraesCS7D01G544900 chr7A 93.320 973 53 6 2894 3856 735375889 735374919 0.000000e+00 1426.0
15 TraesCS7D01G544900 chr7A 93.203 971 56 6 2894 3856 735393956 735392988 0.000000e+00 1419.0
16 TraesCS7D01G544900 chr7A 92.530 830 53 5 3034 3856 735343035 735342208 0.000000e+00 1181.0
17 TraesCS7D01G544900 chr7A 93.056 144 10 0 2894 3037 735357645 735357502 1.210000e-50 211.0
18 TraesCS7D01G544900 chr7A 92.000 50 2 2 2790 2837 735357684 735357635 7.710000e-08 69.4
19 TraesCS7D01G544900 chr3D 93.084 347 23 1 3951 4297 81411323 81411668 1.380000e-139 507.0
20 TraesCS7D01G544900 chr3D 92.219 347 27 0 3951 4297 62406930 62407276 3.860000e-135 492.0
21 TraesCS7D01G544900 chr3D 95.484 155 6 1 15 168 108737648 108737802 3.320000e-61 246.0
22 TraesCS7D01G544900 chr3D 94.937 158 6 2 15 171 287933549 287933705 3.320000e-61 246.0
23 TraesCS7D01G544900 chr6D 92.795 347 25 0 3951 4297 310948229 310947883 1.780000e-138 503.0
24 TraesCS7D01G544900 chr6D 92.507 347 26 0 3951 4297 198620393 198620047 8.300000e-137 497.0
25 TraesCS7D01G544900 chr6D 92.174 345 27 0 3953 4297 265030997 265031341 4.990000e-134 488.0
26 TraesCS7D01G544900 chr1D 92.754 345 25 0 3953 4297 380019908 380020252 2.310000e-137 499.0
27 TraesCS7D01G544900 chr1D 92.962 341 24 0 3957 4297 122559407 122559067 8.300000e-137 497.0
28 TraesCS7D01G544900 chr1D 94.304 158 7 2 15 171 346041585 346041429 1.540000e-59 241.0
29 TraesCS7D01G544900 chr1D 95.000 40 2 0 381 420 100666488 100666527 3.590000e-06 63.9
30 TraesCS7D01G544900 chr2D 92.442 344 26 0 3954 4297 377497205 377497548 3.860000e-135 492.0
31 TraesCS7D01G544900 chr2D 94.937 158 6 2 15 172 596057831 596057986 3.320000e-61 246.0
32 TraesCS7D01G544900 chr5B 94.410 161 8 1 15 174 293222229 293222069 3.320000e-61 246.0
33 TraesCS7D01G544900 chr4B 94.872 156 7 1 15 169 594366162 594366007 4.290000e-60 243.0
34 TraesCS7D01G544900 chr3B 93.827 162 8 2 15 175 792152239 792152079 4.290000e-60 243.0
35 TraesCS7D01G544900 chr4D 93.252 163 9 2 15 176 341973573 341973412 5.550000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G544900 chr7D 632351585 632355881 4296 False 7936.000000 7936 100.000000 1 4297 1 chr7D.!!$F1 4296
1 TraesCS7D01G544900 chr7D 632359989 632363929 3940 False 6301.000000 6301 95.543000 15 3954 1 chr7D.!!$F2 3939
2 TraesCS7D01G544900 chr7B 744481614 744485296 3682 False 5232.000000 5232 92.341000 170 3856 1 chr7B.!!$F3 3686
3 TraesCS7D01G544900 chr7B 744504117 744507790 3673 False 5212.000000 5212 92.268000 170 3856 1 chr7B.!!$F4 3686
4 TraesCS7D01G544900 chr7B 744460477 744463568 3091 False 4475.000000 4475 92.782000 752 3856 1 chr7B.!!$F2 3104
5 TraesCS7D01G544900 chr7B 744443210 744446662 3452 False 2418.000000 3454 91.984000 170 3856 2 chr7B.!!$F5 3686
6 TraesCS7D01G544900 chr7B 744492859 744496198 3339 False 2380.000000 2429 92.528500 170 3856 2 chr7B.!!$F6 3686
7 TraesCS7D01G544900 chr7A 735374919 735378532 3613 True 2608.000000 3790 92.865500 170 3856 2 chr7A.!!$R3 3686
8 TraesCS7D01G544900 chr7A 735392988 735396599 3611 True 2604.500000 3790 92.807000 170 3856 2 chr7A.!!$R4 3686
9 TraesCS7D01G544900 chr7A 735357502 735360306 2804 True 1334.133333 3722 92.521333 170 3037 3 chr7A.!!$R2 2867
10 TraesCS7D01G544900 chr7A 735342208 735343035 827 True 1181.000000 1181 92.530000 3034 3856 1 chr7A.!!$R1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.451383 TGCAGCCGCACAATCAATAC 59.549 50.000 0.0 0.0 45.36 1.89 F
1166 1171 0.417841 TTTGGAGGAGGAGCTAGGGT 59.582 55.000 0.0 0.0 0.00 4.34 F
1531 1537 1.135083 CGATGTAGAAAGTGGCCGACT 60.135 52.381 0.0 0.0 35.94 4.18 F
2830 2866 1.745232 TTTGAGACGTGGTGCTTGTT 58.255 45.000 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1229 1.000394 TCGACCTTGACGAAATCTGCA 60.000 47.619 0.0 0.0 36.84 4.41 R
3085 3121 2.012673 GGTGTGTCAGATGGAAGCATC 58.987 52.381 0.0 0.0 0.00 3.91 R
3186 3222 1.519234 TCATCATGTCAGCGACGGC 60.519 57.895 0.0 0.0 34.95 5.68 R
4183 4234 0.105593 GATGGATCGCTGGAGCTTCA 59.894 55.000 0.0 0.0 39.32 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.159472 AGGTGTACGACTACATCAACCA 58.841 45.455 0.00 0.00 36.55 3.67
91 92 1.349357 GGGTATGAAGATGCTCTCCCC 59.651 57.143 0.00 0.00 0.00 4.81
111 112 3.942748 CCCCTCTCGTAGCTATACATCTC 59.057 52.174 0.00 0.00 31.76 2.75
125 126 8.066867 AGCTATACATCTCCATGGATAGATCTT 58.933 37.037 16.63 7.28 45.81 2.40
127 128 5.163281 ACATCTCCATGGATAGATCTTGC 57.837 43.478 16.63 0.00 33.82 4.01
134 135 2.892374 TGGATAGATCTTGCGTGTGTG 58.108 47.619 0.00 0.00 0.00 3.82
135 136 2.233676 TGGATAGATCTTGCGTGTGTGT 59.766 45.455 0.00 0.00 0.00 3.72
137 138 4.045104 GGATAGATCTTGCGTGTGTGTAG 58.955 47.826 0.00 0.00 0.00 2.74
138 139 4.202020 GGATAGATCTTGCGTGTGTGTAGA 60.202 45.833 0.00 0.00 0.00 2.59
139 140 3.660501 AGATCTTGCGTGTGTGTAGAA 57.339 42.857 0.00 0.00 0.00 2.10
140 141 3.990092 AGATCTTGCGTGTGTGTAGAAA 58.010 40.909 0.00 0.00 0.00 2.52
145 146 6.606234 TCTTGCGTGTGTGTAGAAATTTTA 57.394 33.333 0.00 0.00 0.00 1.52
149 150 6.787225 TGCGTGTGTGTAGAAATTTTAGTTT 58.213 32.000 0.00 0.00 0.00 2.66
152 153 7.429920 GCGTGTGTGTAGAAATTTTAGTTTTCA 59.570 33.333 0.00 0.00 35.90 2.69
160 161 9.777843 GTAGAAATTTTAGTTTTCAATGCAACG 57.222 29.630 0.00 0.00 35.90 4.10
166 167 2.131972 GTTTTCAATGCAACGTTCCCC 58.868 47.619 0.00 0.00 0.00 4.81
180 181 2.792116 CGTTCCCCAACACAAATTTTCG 59.208 45.455 0.00 0.00 32.14 3.46
183 184 1.202580 CCCCAACACAAATTTTCGGCA 60.203 47.619 0.00 0.00 0.00 5.69
209 210 0.451383 TGCAGCCGCACAATCAATAC 59.549 50.000 0.00 0.00 45.36 1.89
281 282 5.371526 ACGAATCTTGCATCATTCATAGGT 58.628 37.500 15.07 5.34 0.00 3.08
317 318 5.221244 TGCATATGTACTATGTTCTGCTCGT 60.221 40.000 4.29 0.00 39.61 4.18
341 342 5.388111 TGACTCATACGTCTCAAACTTACG 58.612 41.667 0.00 0.00 42.17 3.18
503 507 1.336148 TGTGTTAAGCCGTCGATTCGT 60.336 47.619 5.89 0.00 0.00 3.85
508 512 4.626604 TGTTAAGCCGTCGATTCGTAAAAT 59.373 37.500 5.89 0.00 0.00 1.82
510 514 6.020440 TGTTAAGCCGTCGATTCGTAAAATAG 60.020 38.462 5.89 0.00 0.00 1.73
631 635 6.677781 TGTCCTCATCAAATCGGAAAATAC 57.322 37.500 0.00 0.00 0.00 1.89
729 733 6.073447 TCATTTCTTTCTAAGGCCCATACA 57.927 37.500 0.00 0.00 0.00 2.29
742 746 5.905088 AGGCCCATACACTACATATCTACT 58.095 41.667 0.00 0.00 0.00 2.57
797 801 1.591183 CCCAAAAGCCCAATCCACG 59.409 57.895 0.00 0.00 0.00 4.94
812 816 0.457509 CCACGCTGCAACAAAACACA 60.458 50.000 0.00 0.00 0.00 3.72
818 822 2.118683 CTGCAACAAAACACACCATCG 58.881 47.619 0.00 0.00 0.00 3.84
954 958 4.398673 GGCAAGAAGAAGATCATCAAGCTT 59.601 41.667 0.10 0.00 35.97 3.74
990 994 1.140312 AGGAGTTTGAGGTGGAGCAA 58.860 50.000 0.00 0.00 0.00 3.91
1037 1041 1.592669 GGCACATGATCGAGGACGG 60.593 63.158 0.00 0.00 40.21 4.79
1139 1144 1.228552 AAGCAAAGGCCACCGACAT 60.229 52.632 5.01 0.00 42.56 3.06
1166 1171 0.417841 TTTGGAGGAGGAGCTAGGGT 59.582 55.000 0.00 0.00 0.00 4.34
1212 1217 3.138798 GCGCTCGTGGAGGACCTA 61.139 66.667 0.00 0.00 37.04 3.08
1217 1222 2.074576 GCTCGTGGAGGACCTAAAAAC 58.925 52.381 0.00 0.00 37.04 2.43
1224 1229 2.581246 GGAGGACCTAAAAACCTGGGAT 59.419 50.000 0.00 0.00 33.89 3.85
1227 1232 2.556559 GGACCTAAAAACCTGGGATGCA 60.557 50.000 0.00 0.00 0.00 3.96
1228 1233 2.755103 GACCTAAAAACCTGGGATGCAG 59.245 50.000 0.00 0.00 0.00 4.41
1264 1269 3.674955 CGACAAGGACACCATATTCGACA 60.675 47.826 0.00 0.00 0.00 4.35
1368 1374 8.458052 GGTTGGAATCAAGATTGTTTTTGTTTT 58.542 29.630 0.00 0.00 32.92 2.43
1371 1377 8.663911 TGGAATCAAGATTGTTTTTGTTTTGTC 58.336 29.630 0.00 0.00 0.00 3.18
1437 1443 4.610605 TTGTCCTCGTACCTTCATCAAA 57.389 40.909 0.00 0.00 0.00 2.69
1523 1529 5.938125 AGTTGTTATTGGCGATGTAGAAAGT 59.062 36.000 0.00 0.00 0.00 2.66
1531 1537 1.135083 CGATGTAGAAAGTGGCCGACT 60.135 52.381 0.00 0.00 35.94 4.18
1537 1543 3.802948 AGAAAGTGGCCGACTATACAG 57.197 47.619 8.07 0.00 33.09 2.74
1711 1717 7.238486 ACATATATGGGATGAAGAGTGAGTC 57.762 40.000 16.96 0.00 0.00 3.36
1792 1798 7.728847 TTGTGATTATGCTACATATGTCACC 57.271 36.000 12.68 2.60 35.18 4.02
1796 1802 7.597369 GTGATTATGCTACATATGTCACCGTTA 59.403 37.037 12.68 0.00 31.13 3.18
2416 2429 2.537633 ACCATGCATGACTTCCCATT 57.462 45.000 28.31 0.00 0.00 3.16
2543 2561 3.501062 ACATGTGTCATCTTCACTTGCAG 59.499 43.478 0.00 0.00 41.46 4.41
2546 2564 4.898320 TGTGTCATCTTCACTTGCAGTAT 58.102 39.130 0.00 0.00 36.83 2.12
2616 2634 6.645827 TGTTGTGGTTTGATTTTGCTATGATG 59.354 34.615 0.00 0.00 0.00 3.07
2830 2866 1.745232 TTTGAGACGTGGTGCTTGTT 58.255 45.000 0.00 0.00 0.00 2.83
3023 3059 2.548875 TGCATGCCTTGTTTTGTGTTC 58.451 42.857 16.68 0.00 0.00 3.18
3037 3073 4.530094 TTGTGTTCTAGTTTGTCGCAAG 57.470 40.909 0.00 0.00 0.00 4.01
3085 3121 9.680315 TGTAATTAACCATGTTTTTAGAAACCG 57.320 29.630 6.43 0.00 43.57 4.44
3094 3130 4.580995 TGTTTTTAGAAACCGATGCTTCCA 59.419 37.500 6.43 0.00 43.57 3.53
3586 3629 3.127030 GGGCTTCTTCGTTGGTTATTCAG 59.873 47.826 0.00 0.00 0.00 3.02
3767 3814 1.479323 GGTAGCCACTTACGACCATGA 59.521 52.381 0.00 0.00 33.44 3.07
3867 3917 2.556189 CGGGTGATGTGTGGATTTTTCA 59.444 45.455 0.00 0.00 0.00 2.69
3868 3918 3.193267 CGGGTGATGTGTGGATTTTTCAT 59.807 43.478 0.00 0.00 0.00 2.57
3869 3919 4.675146 CGGGTGATGTGTGGATTTTTCATC 60.675 45.833 0.00 0.00 36.46 2.92
3870 3920 4.220382 GGGTGATGTGTGGATTTTTCATCA 59.780 41.667 0.00 0.00 41.27 3.07
3954 4005 7.703197 TCATGTTCACAATGCATGATTATTGAC 59.297 33.333 18.59 10.58 42.51 3.18
3955 4006 6.921914 TGTTCACAATGCATGATTATTGACA 58.078 32.000 18.59 12.27 37.63 3.58
3956 4007 7.548967 TGTTCACAATGCATGATTATTGACAT 58.451 30.769 18.59 0.00 37.63 3.06
3957 4008 7.489757 TGTTCACAATGCATGATTATTGACATG 59.510 33.333 18.59 0.00 44.32 3.21
3958 4009 7.102847 TCACAATGCATGATTATTGACATGT 57.897 32.000 18.59 0.00 43.67 3.21
3959 4010 7.197703 TCACAATGCATGATTATTGACATGTC 58.802 34.615 19.27 19.27 43.67 3.06
3960 4011 6.141685 CACAATGCATGATTATTGACATGTCG 59.858 38.462 20.54 4.46 43.67 4.35
3961 4012 4.213596 TGCATGATTATTGACATGTCGC 57.786 40.909 20.54 14.14 43.67 5.19
3962 4013 3.220773 GCATGATTATTGACATGTCGCG 58.779 45.455 20.54 0.00 43.67 5.87
3963 4014 3.059665 GCATGATTATTGACATGTCGCGA 60.060 43.478 20.54 3.71 43.67 5.87
3964 4015 4.552572 GCATGATTATTGACATGTCGCGAA 60.553 41.667 20.54 13.71 43.67 4.70
3965 4016 5.500825 CATGATTATTGACATGTCGCGAAA 58.499 37.500 20.54 5.59 38.98 3.46
3966 4017 5.142635 TGATTATTGACATGTCGCGAAAG 57.857 39.130 20.54 6.23 0.00 2.62
3967 4018 4.033932 TGATTATTGACATGTCGCGAAAGG 59.966 41.667 20.54 10.82 0.00 3.11
3968 4019 1.808411 ATTGACATGTCGCGAAAGGT 58.192 45.000 17.73 17.73 0.00 3.50
3969 4020 1.588674 TTGACATGTCGCGAAAGGTT 58.411 45.000 18.76 1.69 0.00 3.50
3970 4021 1.588674 TGACATGTCGCGAAAGGTTT 58.411 45.000 18.76 0.00 0.00 3.27
3971 4022 1.944024 TGACATGTCGCGAAAGGTTTT 59.056 42.857 18.76 0.00 0.00 2.43
3972 4023 2.032377 TGACATGTCGCGAAAGGTTTTC 60.032 45.455 18.76 6.18 0.00 2.29
3973 4024 1.070175 ACATGTCGCGAAAGGTTTTCG 60.070 47.619 11.46 16.99 44.06 3.46
3974 4025 1.193650 CATGTCGCGAAAGGTTTTCGA 59.806 47.619 23.38 10.18 43.97 3.71
3975 4026 0.578211 TGTCGCGAAAGGTTTTCGAC 59.422 50.000 23.38 19.04 43.97 4.20
3976 4027 0.578211 GTCGCGAAAGGTTTTCGACA 59.422 50.000 23.38 8.98 43.97 4.35
3977 4028 1.193874 GTCGCGAAAGGTTTTCGACAT 59.806 47.619 23.38 0.00 43.97 3.06
3978 4029 1.193650 TCGCGAAAGGTTTTCGACATG 59.806 47.619 23.38 11.76 43.97 3.21
3979 4030 1.070175 CGCGAAAGGTTTTCGACATGT 60.070 47.619 23.38 0.00 43.97 3.21
3980 4031 2.601266 CGCGAAAGGTTTTCGACATGTT 60.601 45.455 23.38 0.00 43.97 2.71
3981 4032 2.971261 GCGAAAGGTTTTCGACATGTTC 59.029 45.455 23.38 4.48 43.97 3.18
3982 4033 3.547214 GCGAAAGGTTTTCGACATGTTCA 60.547 43.478 23.38 0.00 43.97 3.18
3983 4034 4.593157 CGAAAGGTTTTCGACATGTTCAA 58.407 39.130 16.48 0.00 43.97 2.69
3984 4035 5.212194 CGAAAGGTTTTCGACATGTTCAAT 58.788 37.500 16.48 0.00 43.97 2.57
3985 4036 5.115472 CGAAAGGTTTTCGACATGTTCAATG 59.885 40.000 16.48 0.00 43.97 2.82
3986 4037 4.503741 AGGTTTTCGACATGTTCAATGG 57.496 40.909 0.00 0.00 0.00 3.16
3987 4038 2.986479 GGTTTTCGACATGTTCAATGGC 59.014 45.455 0.00 0.00 0.00 4.40
3988 4039 3.305335 GGTTTTCGACATGTTCAATGGCT 60.305 43.478 0.00 0.00 0.00 4.75
3989 4040 4.298332 GTTTTCGACATGTTCAATGGCTT 58.702 39.130 0.00 0.00 0.00 4.35
3990 4041 3.557577 TTCGACATGTTCAATGGCTTG 57.442 42.857 0.00 0.00 0.00 4.01
3991 4042 2.777094 TCGACATGTTCAATGGCTTGA 58.223 42.857 0.00 0.00 39.62 3.02
3992 4043 2.483877 TCGACATGTTCAATGGCTTGAC 59.516 45.455 0.00 0.00 41.05 3.18
3993 4044 2.485426 CGACATGTTCAATGGCTTGACT 59.515 45.455 0.00 0.00 41.05 3.41
3994 4045 3.684305 CGACATGTTCAATGGCTTGACTA 59.316 43.478 0.00 0.00 41.05 2.59
3995 4046 4.436050 CGACATGTTCAATGGCTTGACTAC 60.436 45.833 0.00 0.00 41.05 2.73
3996 4047 3.436704 ACATGTTCAATGGCTTGACTACG 59.563 43.478 0.00 0.00 41.05 3.51
3997 4048 3.394674 TGTTCAATGGCTTGACTACGA 57.605 42.857 0.00 0.00 41.05 3.43
3998 4049 3.937814 TGTTCAATGGCTTGACTACGAT 58.062 40.909 0.00 0.00 41.05 3.73
3999 4050 3.684305 TGTTCAATGGCTTGACTACGATG 59.316 43.478 0.00 0.00 41.05 3.84
4000 4051 3.885724 TCAATGGCTTGACTACGATGA 57.114 42.857 0.00 0.00 36.46 2.92
4001 4052 3.785486 TCAATGGCTTGACTACGATGAG 58.215 45.455 0.00 0.00 36.46 2.90
4002 4053 3.447229 TCAATGGCTTGACTACGATGAGA 59.553 43.478 0.00 0.00 36.46 3.27
4003 4054 2.941453 TGGCTTGACTACGATGAGAC 57.059 50.000 0.00 0.00 0.00 3.36
4004 4055 2.447443 TGGCTTGACTACGATGAGACT 58.553 47.619 0.00 0.00 0.00 3.24
4005 4056 2.826128 TGGCTTGACTACGATGAGACTT 59.174 45.455 0.00 0.00 0.00 3.01
4006 4057 3.258372 TGGCTTGACTACGATGAGACTTT 59.742 43.478 0.00 0.00 0.00 2.66
4007 4058 3.860536 GGCTTGACTACGATGAGACTTTC 59.139 47.826 0.00 0.00 0.00 2.62
4008 4059 4.381079 GGCTTGACTACGATGAGACTTTCT 60.381 45.833 0.00 0.00 0.00 2.52
4009 4060 4.796312 GCTTGACTACGATGAGACTTTCTC 59.204 45.833 0.00 0.00 43.65 2.87
4018 4069 2.281140 GAGACTTTCTCACCCGTAGC 57.719 55.000 0.00 0.00 42.90 3.58
4019 4070 0.526662 AGACTTTCTCACCCGTAGCG 59.473 55.000 0.00 0.00 0.00 4.26
4020 4071 0.524862 GACTTTCTCACCCGTAGCGA 59.475 55.000 0.00 0.00 0.00 4.93
4021 4072 0.526662 ACTTTCTCACCCGTAGCGAG 59.473 55.000 0.00 0.00 0.00 5.03
4022 4073 0.526662 CTTTCTCACCCGTAGCGAGT 59.473 55.000 0.00 0.00 0.00 4.18
4023 4074 0.524862 TTTCTCACCCGTAGCGAGTC 59.475 55.000 0.00 0.00 0.00 3.36
4024 4075 0.322277 TTCTCACCCGTAGCGAGTCT 60.322 55.000 0.00 0.00 0.00 3.24
4025 4076 0.322277 TCTCACCCGTAGCGAGTCTT 60.322 55.000 0.00 0.00 0.00 3.01
4026 4077 1.065926 TCTCACCCGTAGCGAGTCTTA 60.066 52.381 0.00 0.00 0.00 2.10
4027 4078 1.741706 CTCACCCGTAGCGAGTCTTAA 59.258 52.381 0.00 0.00 0.00 1.85
4028 4079 1.741706 TCACCCGTAGCGAGTCTTAAG 59.258 52.381 0.00 0.00 0.00 1.85
4029 4080 1.471684 CACCCGTAGCGAGTCTTAAGT 59.528 52.381 1.63 0.00 0.00 2.24
4030 4081 1.742268 ACCCGTAGCGAGTCTTAAGTC 59.258 52.381 1.63 0.00 0.00 3.01
4031 4082 2.015587 CCCGTAGCGAGTCTTAAGTCT 58.984 52.381 1.61 1.61 0.00 3.24
4032 4083 3.201290 CCCGTAGCGAGTCTTAAGTCTA 58.799 50.000 2.04 0.00 0.00 2.59
4033 4084 3.814283 CCCGTAGCGAGTCTTAAGTCTAT 59.186 47.826 2.04 0.00 0.00 1.98
4034 4085 4.083908 CCCGTAGCGAGTCTTAAGTCTATC 60.084 50.000 2.04 0.00 0.00 2.08
4035 4086 4.083908 CCGTAGCGAGTCTTAAGTCTATCC 60.084 50.000 2.04 0.00 0.00 2.59
4036 4087 4.376210 CGTAGCGAGTCTTAAGTCTATCCG 60.376 50.000 2.04 4.01 0.00 4.18
4037 4088 3.806380 AGCGAGTCTTAAGTCTATCCGA 58.194 45.455 11.53 0.00 0.00 4.55
4038 4089 4.197750 AGCGAGTCTTAAGTCTATCCGAA 58.802 43.478 11.53 0.00 0.00 4.30
4039 4090 4.822896 AGCGAGTCTTAAGTCTATCCGAAT 59.177 41.667 11.53 0.23 0.00 3.34
4040 4091 5.049267 AGCGAGTCTTAAGTCTATCCGAATC 60.049 44.000 11.53 0.00 0.00 2.52
4041 4092 5.277876 GCGAGTCTTAAGTCTATCCGAATCA 60.278 44.000 11.53 0.00 0.00 2.57
4042 4093 6.568844 GCGAGTCTTAAGTCTATCCGAATCAT 60.569 42.308 11.53 0.00 0.00 2.45
4043 4094 6.799441 CGAGTCTTAAGTCTATCCGAATCATG 59.201 42.308 2.04 0.00 0.00 3.07
4044 4095 7.520776 CGAGTCTTAAGTCTATCCGAATCATGT 60.521 40.741 2.04 0.00 0.00 3.21
4045 4096 8.012957 AGTCTTAAGTCTATCCGAATCATGTT 57.987 34.615 1.63 0.00 0.00 2.71
4046 4097 9.132923 AGTCTTAAGTCTATCCGAATCATGTTA 57.867 33.333 1.63 0.00 0.00 2.41
4047 4098 9.182933 GTCTTAAGTCTATCCGAATCATGTTAC 57.817 37.037 1.63 0.00 0.00 2.50
4048 4099 8.358148 TCTTAAGTCTATCCGAATCATGTTACC 58.642 37.037 1.63 0.00 0.00 2.85
4049 4100 6.479972 AAGTCTATCCGAATCATGTTACCA 57.520 37.500 0.00 0.00 0.00 3.25
4050 4101 6.479972 AGTCTATCCGAATCATGTTACCAA 57.520 37.500 0.00 0.00 0.00 3.67
4051 4102 7.067496 AGTCTATCCGAATCATGTTACCAAT 57.933 36.000 0.00 0.00 0.00 3.16
4052 4103 7.509546 AGTCTATCCGAATCATGTTACCAATT 58.490 34.615 0.00 0.00 0.00 2.32
4053 4104 7.442364 AGTCTATCCGAATCATGTTACCAATTG 59.558 37.037 0.00 0.00 0.00 2.32
4054 4105 4.630894 TCCGAATCATGTTACCAATTGC 57.369 40.909 0.00 0.00 0.00 3.56
4055 4106 3.380004 TCCGAATCATGTTACCAATTGCC 59.620 43.478 0.00 0.00 0.00 4.52
4056 4107 3.362295 CGAATCATGTTACCAATTGCCG 58.638 45.455 0.00 0.00 0.00 5.69
4057 4108 2.869233 ATCATGTTACCAATTGCCGC 57.131 45.000 0.00 0.00 0.00 6.53
4058 4109 1.539157 TCATGTTACCAATTGCCGCA 58.461 45.000 0.00 0.00 0.00 5.69
4059 4110 2.098614 TCATGTTACCAATTGCCGCAT 58.901 42.857 0.00 0.00 0.00 4.73
4060 4111 2.495270 TCATGTTACCAATTGCCGCATT 59.505 40.909 0.00 0.00 0.00 3.56
4061 4112 3.056250 TCATGTTACCAATTGCCGCATTT 60.056 39.130 0.00 0.00 0.00 2.32
4062 4113 3.393089 TGTTACCAATTGCCGCATTTT 57.607 38.095 0.00 0.00 0.00 1.82
4063 4114 4.521130 TGTTACCAATTGCCGCATTTTA 57.479 36.364 0.00 0.00 0.00 1.52
4064 4115 5.078411 TGTTACCAATTGCCGCATTTTAT 57.922 34.783 0.00 0.00 0.00 1.40
4065 4116 4.867047 TGTTACCAATTGCCGCATTTTATG 59.133 37.500 0.00 0.00 0.00 1.90
4066 4117 3.883830 ACCAATTGCCGCATTTTATGA 57.116 38.095 0.00 0.00 0.00 2.15
4067 4118 4.405116 ACCAATTGCCGCATTTTATGAT 57.595 36.364 0.00 0.00 0.00 2.45
4068 4119 4.768583 ACCAATTGCCGCATTTTATGATT 58.231 34.783 0.00 0.00 0.00 2.57
4069 4120 5.184711 ACCAATTGCCGCATTTTATGATTT 58.815 33.333 0.00 0.00 0.00 2.17
4070 4121 5.647225 ACCAATTGCCGCATTTTATGATTTT 59.353 32.000 0.00 0.00 0.00 1.82
4071 4122 5.966503 CCAATTGCCGCATTTTATGATTTTG 59.033 36.000 0.00 0.00 0.00 2.44
4072 4123 6.183360 CCAATTGCCGCATTTTATGATTTTGA 60.183 34.615 0.00 0.00 0.00 2.69
4073 4124 6.981762 ATTGCCGCATTTTATGATTTTGAA 57.018 29.167 0.00 0.00 0.00 2.69
4074 4125 6.791887 TTGCCGCATTTTATGATTTTGAAA 57.208 29.167 0.00 0.00 0.00 2.69
4075 4126 6.981762 TGCCGCATTTTATGATTTTGAAAT 57.018 29.167 0.00 0.00 0.00 2.17
4076 4127 7.002816 TGCCGCATTTTATGATTTTGAAATC 57.997 32.000 9.05 9.05 43.91 2.17
4077 4128 6.817641 TGCCGCATTTTATGATTTTGAAATCT 59.182 30.769 15.27 6.05 43.97 2.40
4078 4129 7.121272 GCCGCATTTTATGATTTTGAAATCTG 58.879 34.615 15.27 7.18 43.97 2.90
4079 4130 7.623770 CCGCATTTTATGATTTTGAAATCTGG 58.376 34.615 15.27 3.15 43.97 3.86
4080 4131 7.121272 CGCATTTTATGATTTTGAAATCTGGC 58.879 34.615 15.27 8.62 43.97 4.85
4081 4132 7.201539 CGCATTTTATGATTTTGAAATCTGGCA 60.202 33.333 15.27 0.00 43.97 4.92
4082 4133 8.452534 GCATTTTATGATTTTGAAATCTGGCAA 58.547 29.630 15.27 6.25 43.97 4.52
4086 4137 6.995511 ATGATTTTGAAATCTGGCAAATGG 57.004 33.333 15.27 0.00 43.97 3.16
4087 4138 6.111669 TGATTTTGAAATCTGGCAAATGGA 57.888 33.333 15.27 0.00 43.97 3.41
4088 4139 6.713276 TGATTTTGAAATCTGGCAAATGGAT 58.287 32.000 15.27 0.00 43.97 3.41
4089 4140 6.596106 TGATTTTGAAATCTGGCAAATGGATG 59.404 34.615 15.27 0.00 43.97 3.51
4090 4141 3.530265 TGAAATCTGGCAAATGGATGC 57.470 42.857 0.00 0.00 45.67 3.91
4099 4150 1.465777 GCAAATGGATGCCAAAACTGC 59.534 47.619 0.00 0.00 40.49 4.40
4100 4151 2.768698 CAAATGGATGCCAAAACTGCA 58.231 42.857 0.00 0.00 43.97 4.41
4108 4159 4.888326 ATGCCAAAACTGCATTCCTTAA 57.112 36.364 0.00 0.00 46.91 1.85
4109 4160 3.988819 TGCCAAAACTGCATTCCTTAAC 58.011 40.909 0.00 0.00 32.85 2.01
4110 4161 3.386078 TGCCAAAACTGCATTCCTTAACA 59.614 39.130 0.00 0.00 32.85 2.41
4111 4162 3.989817 GCCAAAACTGCATTCCTTAACAG 59.010 43.478 0.00 0.00 36.22 3.16
4112 4163 4.559153 CCAAAACTGCATTCCTTAACAGG 58.441 43.478 0.00 0.00 42.50 4.00
4113 4164 4.039124 CCAAAACTGCATTCCTTAACAGGT 59.961 41.667 0.00 0.00 41.69 4.00
4114 4165 5.453198 CCAAAACTGCATTCCTTAACAGGTT 60.453 40.000 0.00 0.00 41.67 3.50
4115 4166 5.869649 AAACTGCATTCCTTAACAGGTTT 57.130 34.783 0.00 0.00 36.70 3.27
4116 4167 5.453567 AACTGCATTCCTTAACAGGTTTC 57.546 39.130 0.00 0.00 41.69 2.78
4117 4168 4.729868 ACTGCATTCCTTAACAGGTTTCT 58.270 39.130 0.00 0.00 41.69 2.52
4118 4169 5.140454 ACTGCATTCCTTAACAGGTTTCTT 58.860 37.500 0.00 0.00 41.69 2.52
4119 4170 5.010012 ACTGCATTCCTTAACAGGTTTCTTG 59.990 40.000 0.00 0.00 41.69 3.02
4120 4171 5.136828 TGCATTCCTTAACAGGTTTCTTGA 58.863 37.500 0.00 0.00 41.69 3.02
4121 4172 5.596361 TGCATTCCTTAACAGGTTTCTTGAA 59.404 36.000 0.00 0.00 41.69 2.69
4122 4173 6.152379 GCATTCCTTAACAGGTTTCTTGAAG 58.848 40.000 0.00 0.00 41.69 3.02
4123 4174 6.016276 GCATTCCTTAACAGGTTTCTTGAAGA 60.016 38.462 0.00 0.00 41.69 2.87
4124 4175 7.470009 GCATTCCTTAACAGGTTTCTTGAAGAA 60.470 37.037 3.02 3.02 41.69 2.52
4125 4176 7.568199 TTCCTTAACAGGTTTCTTGAAGAAG 57.432 36.000 7.76 0.00 41.69 2.85
4126 4177 6.895782 TCCTTAACAGGTTTCTTGAAGAAGA 58.104 36.000 7.76 0.00 41.69 2.87
4127 4178 6.992715 TCCTTAACAGGTTTCTTGAAGAAGAG 59.007 38.462 7.76 2.74 41.69 2.85
4128 4179 6.768381 CCTTAACAGGTTTCTTGAAGAAGAGT 59.232 38.462 7.76 3.32 36.11 3.24
4129 4180 7.283354 CCTTAACAGGTTTCTTGAAGAAGAGTT 59.717 37.037 7.76 12.60 36.11 3.01
4130 4181 6.442513 AACAGGTTTCTTGAAGAAGAGTTG 57.557 37.500 7.76 8.11 39.44 3.16
4131 4182 5.501156 ACAGGTTTCTTGAAGAAGAGTTGT 58.499 37.500 7.76 8.66 39.44 3.32
4132 4183 6.650120 ACAGGTTTCTTGAAGAAGAGTTGTA 58.350 36.000 7.76 0.00 39.44 2.41
4133 4184 7.283329 ACAGGTTTCTTGAAGAAGAGTTGTAT 58.717 34.615 7.76 0.00 39.44 2.29
4134 4185 8.429641 ACAGGTTTCTTGAAGAAGAGTTGTATA 58.570 33.333 7.76 0.00 39.44 1.47
4135 4186 9.442047 CAGGTTTCTTGAAGAAGAGTTGTATAT 57.558 33.333 7.76 0.00 39.44 0.86
4136 4187 9.442047 AGGTTTCTTGAAGAAGAGTTGTATATG 57.558 33.333 7.76 0.00 39.44 1.78
4137 4188 8.669243 GGTTTCTTGAAGAAGAGTTGTATATGG 58.331 37.037 7.76 0.00 39.44 2.74
4138 4189 9.220767 GTTTCTTGAAGAAGAGTTGTATATGGT 57.779 33.333 7.76 0.00 39.44 3.55
4139 4190 8.777865 TTCTTGAAGAAGAGTTGTATATGGTG 57.222 34.615 3.02 0.00 39.44 4.17
4140 4191 6.818644 TCTTGAAGAAGAGTTGTATATGGTGC 59.181 38.462 0.00 0.00 32.98 5.01
4141 4192 6.048732 TGAAGAAGAGTTGTATATGGTGCA 57.951 37.500 0.00 0.00 0.00 4.57
4142 4193 6.472016 TGAAGAAGAGTTGTATATGGTGCAA 58.528 36.000 0.00 0.00 0.00 4.08
4163 4214 3.059352 CCAGAAGGTTTTGTCGATCCT 57.941 47.619 0.00 0.00 0.00 3.24
4164 4215 4.202245 CCAGAAGGTTTTGTCGATCCTA 57.798 45.455 0.00 0.00 0.00 2.94
4165 4216 4.575885 CCAGAAGGTTTTGTCGATCCTAA 58.424 43.478 0.00 0.00 0.00 2.69
4166 4217 5.001232 CCAGAAGGTTTTGTCGATCCTAAA 58.999 41.667 0.00 0.00 0.00 1.85
4167 4218 5.122396 CCAGAAGGTTTTGTCGATCCTAAAG 59.878 44.000 0.00 0.00 0.00 1.85
4168 4219 5.122396 CAGAAGGTTTTGTCGATCCTAAAGG 59.878 44.000 0.00 0.00 0.00 3.11
4169 4220 4.635699 AGGTTTTGTCGATCCTAAAGGT 57.364 40.909 0.00 0.00 36.34 3.50
4170 4221 4.324267 AGGTTTTGTCGATCCTAAAGGTG 58.676 43.478 0.00 0.00 36.34 4.00
4171 4222 3.119955 GGTTTTGTCGATCCTAAAGGTGC 60.120 47.826 0.00 0.00 36.34 5.01
4172 4223 3.695830 TTTGTCGATCCTAAAGGTGCT 57.304 42.857 0.00 0.00 36.34 4.40
4173 4224 4.811969 TTTGTCGATCCTAAAGGTGCTA 57.188 40.909 0.00 0.00 36.34 3.49
4174 4225 4.811969 TTGTCGATCCTAAAGGTGCTAA 57.188 40.909 0.00 0.00 36.34 3.09
4175 4226 4.119442 TGTCGATCCTAAAGGTGCTAAC 57.881 45.455 0.00 0.00 36.34 2.34
4176 4227 3.512329 TGTCGATCCTAAAGGTGCTAACA 59.488 43.478 0.00 0.00 36.34 2.41
4177 4228 4.020928 TGTCGATCCTAAAGGTGCTAACAA 60.021 41.667 0.00 0.00 36.34 2.83
4178 4229 4.933400 GTCGATCCTAAAGGTGCTAACAAA 59.067 41.667 0.00 0.00 36.34 2.83
4179 4230 5.063564 GTCGATCCTAAAGGTGCTAACAAAG 59.936 44.000 0.00 0.00 36.34 2.77
4180 4231 4.935808 CGATCCTAAAGGTGCTAACAAAGT 59.064 41.667 0.00 0.00 36.34 2.66
4181 4232 5.163854 CGATCCTAAAGGTGCTAACAAAGTG 60.164 44.000 0.00 0.00 36.34 3.16
4182 4233 5.043737 TCCTAAAGGTGCTAACAAAGTGT 57.956 39.130 0.00 0.00 36.34 3.55
4183 4234 5.442391 TCCTAAAGGTGCTAACAAAGTGTT 58.558 37.500 0.00 0.00 39.18 3.32
4184 4235 5.298276 TCCTAAAGGTGCTAACAAAGTGTTG 59.702 40.000 3.90 0.00 37.55 3.33
4185 4236 5.298276 CCTAAAGGTGCTAACAAAGTGTTGA 59.702 40.000 3.90 0.00 41.30 3.18
4186 4237 5.652994 AAAGGTGCTAACAAAGTGTTGAA 57.347 34.783 3.90 0.00 41.30 2.69
4187 4238 4.900635 AGGTGCTAACAAAGTGTTGAAG 57.099 40.909 3.90 0.00 41.30 3.02
4188 4239 3.066760 AGGTGCTAACAAAGTGTTGAAGC 59.933 43.478 3.90 6.44 41.30 3.86
4189 4240 3.066760 GGTGCTAACAAAGTGTTGAAGCT 59.933 43.478 13.97 0.00 41.30 3.74
4190 4241 4.282873 GTGCTAACAAAGTGTTGAAGCTC 58.717 43.478 13.97 8.81 41.30 4.09
4191 4242 3.315191 TGCTAACAAAGTGTTGAAGCTCC 59.685 43.478 13.97 0.00 41.30 4.70
4192 4243 3.315191 GCTAACAAAGTGTTGAAGCTCCA 59.685 43.478 3.90 0.00 41.30 3.86
4193 4244 4.555511 GCTAACAAAGTGTTGAAGCTCCAG 60.556 45.833 3.90 0.00 41.30 3.86
4194 4245 1.678101 ACAAAGTGTTGAAGCTCCAGC 59.322 47.619 0.00 0.00 38.20 4.85
4195 4246 1.334419 CAAAGTGTTGAAGCTCCAGCG 60.334 52.381 0.00 0.00 40.79 5.18
4196 4247 3.634502 CAAAGTGTTGAAGCTCCAGCGA 61.635 50.000 0.00 0.00 40.79 4.93
4197 4248 4.907326 CAAAGTGTTGAAGCTCCAGCGAT 61.907 47.826 0.00 0.00 40.79 4.58
4198 4249 6.655349 CAAAGTGTTGAAGCTCCAGCGATC 62.655 50.000 0.00 0.00 40.79 3.69
4206 4257 2.007360 GCTCCAGCGATCCATCTATG 57.993 55.000 0.00 0.00 0.00 2.23
4219 4270 1.945394 CATCTATGGACTGGTGCAAGC 59.055 52.381 0.00 0.00 33.77 4.01
4220 4271 0.983467 TCTATGGACTGGTGCAAGCA 59.017 50.000 0.00 0.00 45.41 3.91
4221 4272 1.561076 TCTATGGACTGGTGCAAGCAT 59.439 47.619 0.00 0.00 46.93 3.79
4222 4273 1.945394 CTATGGACTGGTGCAAGCATC 59.055 52.381 0.00 0.00 46.93 3.91
4223 4274 0.330604 ATGGACTGGTGCAAGCATCT 59.669 50.000 6.88 0.00 46.93 2.90
4224 4275 0.321919 TGGACTGGTGCAAGCATCTC 60.322 55.000 6.88 0.00 46.93 2.75
4225 4276 1.364626 GGACTGGTGCAAGCATCTCG 61.365 60.000 6.88 0.72 46.93 4.04
4226 4277 1.364626 GACTGGTGCAAGCATCTCGG 61.365 60.000 6.88 4.02 46.93 4.63
4227 4278 1.078918 CTGGTGCAAGCATCTCGGA 60.079 57.895 6.88 0.00 46.93 4.55
4228 4279 1.078918 TGGTGCAAGCATCTCGGAG 60.079 57.895 6.88 0.00 40.88 4.63
4229 4280 1.078848 GGTGCAAGCATCTCGGAGT 60.079 57.895 4.69 0.00 0.00 3.85
4230 4281 0.674895 GGTGCAAGCATCTCGGAGTT 60.675 55.000 4.69 0.00 0.00 3.01
4231 4282 0.445436 GTGCAAGCATCTCGGAGTTG 59.555 55.000 10.96 10.96 0.00 3.16
4232 4283 0.674581 TGCAAGCATCTCGGAGTTGG 60.675 55.000 15.76 4.14 0.00 3.77
4233 4284 0.391661 GCAAGCATCTCGGAGTTGGA 60.392 55.000 15.76 0.00 0.00 3.53
4234 4285 1.945819 GCAAGCATCTCGGAGTTGGAA 60.946 52.381 15.76 0.00 0.00 3.53
4235 4286 2.636830 CAAGCATCTCGGAGTTGGAAT 58.363 47.619 15.76 0.00 0.00 3.01
4236 4287 3.797039 CAAGCATCTCGGAGTTGGAATA 58.203 45.455 15.76 0.00 0.00 1.75
4237 4288 4.384056 CAAGCATCTCGGAGTTGGAATAT 58.616 43.478 15.76 0.00 0.00 1.28
4238 4289 5.541845 CAAGCATCTCGGAGTTGGAATATA 58.458 41.667 15.76 0.00 0.00 0.86
4239 4290 5.140747 AGCATCTCGGAGTTGGAATATAC 57.859 43.478 15.76 0.43 0.00 1.47
4240 4291 3.921021 GCATCTCGGAGTTGGAATATACG 59.079 47.826 15.76 0.00 0.00 3.06
4241 4292 3.637998 TCTCGGAGTTGGAATATACGC 57.362 47.619 4.69 0.00 0.00 4.42
4242 4293 3.220110 TCTCGGAGTTGGAATATACGCT 58.780 45.455 4.69 0.00 0.00 5.07
4243 4294 3.635373 TCTCGGAGTTGGAATATACGCTT 59.365 43.478 4.69 0.00 0.00 4.68
4244 4295 4.098960 TCTCGGAGTTGGAATATACGCTTT 59.901 41.667 4.69 0.00 0.00 3.51
4245 4296 4.116961 TCGGAGTTGGAATATACGCTTTG 58.883 43.478 0.00 0.00 0.00 2.77
4246 4297 4.116961 CGGAGTTGGAATATACGCTTTGA 58.883 43.478 0.00 0.00 0.00 2.69
4247 4298 4.750098 CGGAGTTGGAATATACGCTTTGAT 59.250 41.667 0.00 0.00 0.00 2.57
4248 4299 5.333339 CGGAGTTGGAATATACGCTTTGATG 60.333 44.000 0.00 0.00 0.00 3.07
4249 4300 5.758296 GGAGTTGGAATATACGCTTTGATGA 59.242 40.000 0.00 0.00 0.00 2.92
4250 4301 6.428159 GGAGTTGGAATATACGCTTTGATGAT 59.572 38.462 0.00 0.00 0.00 2.45
4251 4302 7.194607 AGTTGGAATATACGCTTTGATGATG 57.805 36.000 0.00 0.00 0.00 3.07
4252 4303 6.767902 AGTTGGAATATACGCTTTGATGATGT 59.232 34.615 0.00 0.00 0.00 3.06
4253 4304 6.544038 TGGAATATACGCTTTGATGATGTG 57.456 37.500 0.00 0.00 0.00 3.21
4254 4305 6.287525 TGGAATATACGCTTTGATGATGTGA 58.712 36.000 0.00 0.00 0.00 3.58
4255 4306 6.936335 TGGAATATACGCTTTGATGATGTGAT 59.064 34.615 0.00 0.00 0.00 3.06
4256 4307 8.093927 TGGAATATACGCTTTGATGATGTGATA 58.906 33.333 0.00 0.00 0.00 2.15
4257 4308 8.935844 GGAATATACGCTTTGATGATGTGATAA 58.064 33.333 0.00 0.00 0.00 1.75
4261 4312 5.335127 ACGCTTTGATGATGTGATAAAAGC 58.665 37.500 7.66 7.66 43.69 3.51
4262 4313 5.106197 ACGCTTTGATGATGTGATAAAAGCA 60.106 36.000 15.68 0.00 46.10 3.91
4263 4314 5.975344 CGCTTTGATGATGTGATAAAAGCAT 59.025 36.000 15.68 0.00 46.10 3.79
4264 4315 7.134163 CGCTTTGATGATGTGATAAAAGCATA 58.866 34.615 15.68 0.00 46.10 3.14
4265 4316 7.806487 CGCTTTGATGATGTGATAAAAGCATAT 59.194 33.333 15.68 0.00 46.10 1.78
4266 4317 8.912658 GCTTTGATGATGTGATAAAAGCATATG 58.087 33.333 11.83 0.00 45.46 1.78
4267 4318 9.406828 CTTTGATGATGTGATAAAAGCATATGG 57.593 33.333 4.56 0.00 0.00 2.74
4268 4319 8.467963 TTGATGATGTGATAAAAGCATATGGT 57.532 30.769 0.40 0.40 0.00 3.55
4269 4320 8.467963 TGATGATGTGATAAAAGCATATGGTT 57.532 30.769 14.31 14.31 37.35 3.67
4270 4321 8.916062 TGATGATGTGATAAAAGCATATGGTTT 58.084 29.630 23.71 23.71 46.32 3.27
4283 4334 9.632638 AAAGCATATGGTTTTATACAGACTGAT 57.367 29.630 23.71 0.61 42.34 2.90
4284 4335 8.613060 AGCATATGGTTTTATACAGACTGATG 57.387 34.615 10.08 0.00 0.00 3.07
4285 4336 7.663081 AGCATATGGTTTTATACAGACTGATGG 59.337 37.037 10.08 0.00 0.00 3.51
4286 4337 7.445402 GCATATGGTTTTATACAGACTGATGGT 59.555 37.037 10.08 0.00 0.00 3.55
4287 4338 8.777413 CATATGGTTTTATACAGACTGATGGTG 58.223 37.037 10.08 0.00 0.00 4.17
4288 4339 6.367374 TGGTTTTATACAGACTGATGGTGA 57.633 37.500 10.08 0.00 0.00 4.02
4289 4340 6.774673 TGGTTTTATACAGACTGATGGTGAA 58.225 36.000 10.08 0.00 0.00 3.18
4290 4341 6.878923 TGGTTTTATACAGACTGATGGTGAAG 59.121 38.462 10.08 0.00 0.00 3.02
4291 4342 6.183360 GGTTTTATACAGACTGATGGTGAAGC 60.183 42.308 10.08 3.10 0.00 3.86
4292 4343 3.550437 ATACAGACTGATGGTGAAGCC 57.450 47.619 10.08 0.00 37.90 4.35
4293 4344 1.356124 ACAGACTGATGGTGAAGCCT 58.644 50.000 10.08 0.00 38.35 4.58
4294 4345 1.002888 ACAGACTGATGGTGAAGCCTG 59.997 52.381 10.08 0.00 38.35 4.85
4295 4346 1.002888 CAGACTGATGGTGAAGCCTGT 59.997 52.381 0.00 0.00 38.35 4.00
4296 4347 2.234661 CAGACTGATGGTGAAGCCTGTA 59.765 50.000 0.00 0.00 38.35 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.553248 CACCTTCTGTTGGGGATCGTA 59.447 52.381 0.00 0.00 0.00 3.43
1 2 0.324943 CACCTTCTGTTGGGGATCGT 59.675 55.000 0.00 0.00 0.00 3.73
2 3 0.324943 ACACCTTCTGTTGGGGATCG 59.675 55.000 0.00 0.00 0.00 3.69
3 4 2.677037 CGTACACCTTCTGTTGGGGATC 60.677 54.545 0.00 0.00 33.91 3.36
4 5 1.278127 CGTACACCTTCTGTTGGGGAT 59.722 52.381 0.00 0.00 33.91 3.85
5 6 0.682852 CGTACACCTTCTGTTGGGGA 59.317 55.000 0.00 0.00 33.91 4.81
6 7 0.682852 TCGTACACCTTCTGTTGGGG 59.317 55.000 0.00 0.00 33.91 4.96
7 8 1.343465 AGTCGTACACCTTCTGTTGGG 59.657 52.381 0.00 0.00 33.91 4.12
8 9 2.814280 AGTCGTACACCTTCTGTTGG 57.186 50.000 0.00 0.00 33.91 3.77
9 10 4.233123 TGTAGTCGTACACCTTCTGTTG 57.767 45.455 0.00 0.00 34.02 3.33
10 11 4.521639 TGATGTAGTCGTACACCTTCTGTT 59.478 41.667 0.00 0.00 42.06 3.16
11 12 4.077108 TGATGTAGTCGTACACCTTCTGT 58.923 43.478 0.00 0.00 42.06 3.41
12 13 4.696899 TGATGTAGTCGTACACCTTCTG 57.303 45.455 0.00 0.00 42.06 3.02
13 14 4.082354 GGTTGATGTAGTCGTACACCTTCT 60.082 45.833 0.00 0.00 42.06 2.85
91 92 4.580868 TGGAGATGTATAGCTACGAGAGG 58.419 47.826 0.00 0.00 0.00 3.69
111 112 2.804527 CACACGCAAGATCTATCCATGG 59.195 50.000 4.97 4.97 43.62 3.66
125 126 5.994887 ACTAAAATTTCTACACACACGCA 57.005 34.783 0.00 0.00 0.00 5.24
127 128 8.829514 TGAAAACTAAAATTTCTACACACACG 57.170 30.769 0.00 0.00 37.60 4.49
134 135 9.777843 CGTTGCATTGAAAACTAAAATTTCTAC 57.222 29.630 0.00 0.00 37.60 2.59
135 136 9.522804 ACGTTGCATTGAAAACTAAAATTTCTA 57.477 25.926 0.00 0.00 37.60 2.10
137 138 9.142993 GAACGTTGCATTGAAAACTAAAATTTC 57.857 29.630 5.00 0.00 37.31 2.17
138 139 8.119845 GGAACGTTGCATTGAAAACTAAAATTT 58.880 29.630 15.52 0.00 0.00 1.82
139 140 7.254624 GGGAACGTTGCATTGAAAACTAAAATT 60.255 33.333 21.74 0.00 0.00 1.82
140 141 6.201997 GGGAACGTTGCATTGAAAACTAAAAT 59.798 34.615 21.74 0.00 0.00 1.82
145 146 2.223947 GGGGAACGTTGCATTGAAAACT 60.224 45.455 21.74 0.00 0.00 2.66
149 150 1.067821 GTTGGGGAACGTTGCATTGAA 59.932 47.619 21.74 5.18 0.00 2.69
152 153 0.387565 GTGTTGGGGAACGTTGCATT 59.612 50.000 21.74 0.00 0.00 3.56
160 161 3.127589 CCGAAAATTTGTGTTGGGGAAC 58.872 45.455 0.00 0.00 0.00 3.62
166 167 2.472488 GAGCTGCCGAAAATTTGTGTTG 59.528 45.455 0.00 0.00 0.00 3.33
317 318 5.854866 CGTAAGTTTGAGACGTATGAGTCAA 59.145 40.000 0.00 0.00 43.24 3.18
631 635 7.496747 TCAAAGGGGTCAAACTAGAAAATTTG 58.503 34.615 0.00 0.00 37.19 2.32
702 706 3.763897 GGGCCTTAGAAAGAAATGAAGCA 59.236 43.478 0.84 0.00 0.00 3.91
729 733 7.584122 ACGTTTGGATGAGTAGATATGTAGT 57.416 36.000 0.00 0.00 0.00 2.73
742 746 2.159430 CGATTGAGCAACGTTTGGATGA 59.841 45.455 0.00 0.00 0.00 2.92
797 801 1.860326 GATGGTGTGTTTTGTTGCAGC 59.140 47.619 0.00 0.00 0.00 5.25
812 816 2.027100 GGAAGAAAGGAGGAACGATGGT 60.027 50.000 0.00 0.00 0.00 3.55
818 822 1.019805 CGGCGGAAGAAAGGAGGAAC 61.020 60.000 0.00 0.00 0.00 3.62
954 958 3.012518 CTCCTTACCGTCCGAACTCTTA 58.987 50.000 0.00 0.00 0.00 2.10
990 994 4.101448 GACTCCATGGCCACCGCT 62.101 66.667 8.16 0.00 34.44 5.52
1037 1041 2.618053 ACAAGCCGTTGTCAGTATAGC 58.382 47.619 0.00 0.00 43.88 2.97
1139 1144 4.302067 AGCTCCTCCTCCAAAATCAGATA 58.698 43.478 0.00 0.00 0.00 1.98
1166 1171 1.114627 AGCCGATGTAGCATCTGACA 58.885 50.000 7.41 0.00 0.00 3.58
1202 1207 1.708551 CCCAGGTTTTTAGGTCCTCCA 59.291 52.381 0.00 0.00 35.89 3.86
1217 1222 1.303309 GACGAAATCTGCATCCCAGG 58.697 55.000 0.00 0.00 42.05 4.45
1224 1229 1.000394 TCGACCTTGACGAAATCTGCA 60.000 47.619 0.00 0.00 36.84 4.41
1227 1232 3.318017 CTTGTCGACCTTGACGAAATCT 58.682 45.455 14.12 0.00 41.87 2.40
1228 1233 2.412089 CCTTGTCGACCTTGACGAAATC 59.588 50.000 14.12 0.00 41.87 2.17
1264 1269 4.641989 GGAAAGTAATCACACCAGCATGAT 59.358 41.667 0.00 0.00 39.69 2.45
1368 1374 3.118408 AGACACAAGTAACAAGCCAGACA 60.118 43.478 0.00 0.00 0.00 3.41
1371 1377 3.466836 TCAGACACAAGTAACAAGCCAG 58.533 45.455 0.00 0.00 0.00 4.85
1416 1422 4.039973 ACTTTGATGAAGGTACGAGGACAA 59.960 41.667 0.00 0.00 39.79 3.18
1437 1443 7.070074 ACCTAATCCAATCGAGTCAAATCTACT 59.930 37.037 0.00 0.00 0.00 2.57
1523 1529 2.022195 GTGAGTCTGTATAGTCGGCCA 58.978 52.381 2.24 0.00 0.00 5.36
1531 1537 7.403671 CCTAGCTATTAGGGTGAGTCTGTATA 58.596 42.308 0.00 0.00 44.57 1.47
1711 1717 4.846137 CCGCAAGTTATTCAAAGAGAAACG 59.154 41.667 0.00 0.00 40.22 3.60
1792 1798 9.950680 ATGCAAGGTTCAAATATAGAAATAACG 57.049 29.630 0.00 0.00 0.00 3.18
2416 2429 6.662755 ACAAGATCAGGATTTTATAGTGGCA 58.337 36.000 0.00 0.00 0.00 4.92
2570 2588 7.093245 ACAACACAAAACTTGTATTTAGGGGTT 60.093 33.333 0.00 0.00 43.23 4.11
2580 2598 6.085555 TCAAACCACAACACAAAACTTGTA 57.914 33.333 0.00 0.00 43.23 2.41
2818 2854 2.159627 GGTTCAGATAACAAGCACCACG 59.840 50.000 0.00 0.00 0.00 4.94
2830 2866 5.071653 TGCATAAGCTACATGGGTTCAGATA 59.928 40.000 9.58 0.00 42.74 1.98
2929 2965 9.496873 TTGGATCGATAGTCAAGAAAAGTTAAA 57.503 29.630 0.00 0.00 37.40 1.52
3023 3059 6.311445 ACATAGATGTTCTTGCGACAAACTAG 59.689 38.462 0.00 0.00 37.90 2.57
3078 3114 2.237143 TCAGATGGAAGCATCGGTTTCT 59.763 45.455 0.00 0.00 36.73 2.52
3079 3115 2.352960 GTCAGATGGAAGCATCGGTTTC 59.647 50.000 0.00 0.00 36.73 2.78
3085 3121 2.012673 GGTGTGTCAGATGGAAGCATC 58.987 52.381 0.00 0.00 0.00 3.91
3094 3130 6.350445 GCAAAAGGAATAATGGTGTGTCAGAT 60.350 38.462 0.00 0.00 0.00 2.90
3186 3222 1.519234 TCATCATGTCAGCGACGGC 60.519 57.895 0.00 0.00 34.95 5.68
3586 3629 4.481930 TGATCGATGAACAAAACACACC 57.518 40.909 0.54 0.00 0.00 4.16
3746 3793 0.828677 ATGGTCGTAAGTGGCTACCC 59.171 55.000 0.00 0.00 39.48 3.69
3767 3814 5.885912 CCTATATGTTTTAGTGTGGCCTTGT 59.114 40.000 3.32 0.00 0.00 3.16
3917 3968 7.226128 TGCATTGTGAACATGAAAAATTGCTAA 59.774 29.630 0.00 0.00 0.00 3.09
3933 3984 7.548967 ACATGTCAATAATCATGCATTGTGAA 58.451 30.769 0.00 0.00 43.34 3.18
3954 4005 1.193650 TCGAAAACCTTTCGCGACATG 59.806 47.619 9.15 1.11 41.30 3.21
3955 4006 1.193874 GTCGAAAACCTTTCGCGACAT 59.806 47.619 9.15 0.00 42.35 3.06
3956 4007 0.578211 GTCGAAAACCTTTCGCGACA 59.422 50.000 9.15 0.00 42.35 4.35
3957 4008 0.578211 TGTCGAAAACCTTTCGCGAC 59.422 50.000 9.15 13.79 42.73 5.19
3958 4009 1.193650 CATGTCGAAAACCTTTCGCGA 59.806 47.619 3.71 3.71 41.30 5.87
3959 4010 1.070175 ACATGTCGAAAACCTTTCGCG 60.070 47.619 14.94 0.00 41.30 5.87
3960 4011 2.681152 ACATGTCGAAAACCTTTCGC 57.319 45.000 14.94 11.16 41.30 4.70
3961 4012 4.203950 TGAACATGTCGAAAACCTTTCG 57.796 40.909 13.86 13.86 42.74 3.46
3962 4013 5.402270 CCATTGAACATGTCGAAAACCTTTC 59.598 40.000 0.00 0.00 0.00 2.62
3963 4014 5.288804 CCATTGAACATGTCGAAAACCTTT 58.711 37.500 0.00 0.00 0.00 3.11
3964 4015 4.795962 GCCATTGAACATGTCGAAAACCTT 60.796 41.667 0.00 0.00 0.00 3.50
3965 4016 3.305335 GCCATTGAACATGTCGAAAACCT 60.305 43.478 0.00 0.00 0.00 3.50
3966 4017 2.986479 GCCATTGAACATGTCGAAAACC 59.014 45.455 0.00 0.00 0.00 3.27
3967 4018 3.900941 AGCCATTGAACATGTCGAAAAC 58.099 40.909 0.00 0.00 0.00 2.43
3968 4019 4.037327 TCAAGCCATTGAACATGTCGAAAA 59.963 37.500 0.00 0.00 42.47 2.29
3969 4020 3.567585 TCAAGCCATTGAACATGTCGAAA 59.432 39.130 0.00 0.00 42.47 3.46
3970 4021 3.058293 GTCAAGCCATTGAACATGTCGAA 60.058 43.478 0.00 0.00 46.75 3.71
3971 4022 2.483877 GTCAAGCCATTGAACATGTCGA 59.516 45.455 0.00 0.00 46.75 4.20
3972 4023 2.485426 AGTCAAGCCATTGAACATGTCG 59.515 45.455 0.00 0.00 46.75 4.35
3973 4024 4.436050 CGTAGTCAAGCCATTGAACATGTC 60.436 45.833 0.00 0.00 46.75 3.06
3974 4025 3.436704 CGTAGTCAAGCCATTGAACATGT 59.563 43.478 0.00 0.00 46.75 3.21
3975 4026 3.684305 TCGTAGTCAAGCCATTGAACATG 59.316 43.478 0.00 0.00 46.75 3.21
3976 4027 3.937814 TCGTAGTCAAGCCATTGAACAT 58.062 40.909 0.00 0.00 46.75 2.71
3977 4028 3.394674 TCGTAGTCAAGCCATTGAACA 57.605 42.857 0.00 0.00 46.75 3.18
3978 4029 3.932710 TCATCGTAGTCAAGCCATTGAAC 59.067 43.478 0.00 0.00 46.75 3.18
3979 4030 4.081697 TCTCATCGTAGTCAAGCCATTGAA 60.082 41.667 0.00 0.00 46.75 2.69
3980 4031 3.447229 TCTCATCGTAGTCAAGCCATTGA 59.553 43.478 0.00 0.00 43.20 2.57
3981 4032 3.553511 GTCTCATCGTAGTCAAGCCATTG 59.446 47.826 0.00 0.00 37.80 2.82
3982 4033 3.449018 AGTCTCATCGTAGTCAAGCCATT 59.551 43.478 0.00 0.00 0.00 3.16
3983 4034 3.027412 AGTCTCATCGTAGTCAAGCCAT 58.973 45.455 0.00 0.00 0.00 4.40
3984 4035 2.447443 AGTCTCATCGTAGTCAAGCCA 58.553 47.619 0.00 0.00 0.00 4.75
3985 4036 3.512033 AAGTCTCATCGTAGTCAAGCC 57.488 47.619 0.00 0.00 0.00 4.35
3986 4037 4.739195 AGAAAGTCTCATCGTAGTCAAGC 58.261 43.478 0.00 0.00 0.00 4.01
3999 4050 1.467713 CGCTACGGGTGAGAAAGTCTC 60.468 57.143 0.00 0.00 43.65 3.36
4000 4051 0.526662 CGCTACGGGTGAGAAAGTCT 59.473 55.000 0.00 0.00 0.00 3.24
4001 4052 0.524862 TCGCTACGGGTGAGAAAGTC 59.475 55.000 0.00 0.00 0.00 3.01
4002 4053 2.649831 TCGCTACGGGTGAGAAAGT 58.350 52.632 0.00 0.00 0.00 2.66
4008 4059 1.741706 CTTAAGACTCGCTACGGGTGA 59.258 52.381 0.00 0.00 42.20 4.02
4009 4060 1.471684 ACTTAAGACTCGCTACGGGTG 59.528 52.381 10.09 0.00 42.20 4.61
4010 4061 1.742268 GACTTAAGACTCGCTACGGGT 59.258 52.381 10.09 0.00 46.05 5.28
4011 4062 2.015587 AGACTTAAGACTCGCTACGGG 58.984 52.381 10.09 0.00 0.00 5.28
4012 4063 4.083908 GGATAGACTTAAGACTCGCTACGG 60.084 50.000 10.09 0.00 0.00 4.02
4013 4064 4.376210 CGGATAGACTTAAGACTCGCTACG 60.376 50.000 10.09 5.99 0.00 3.51
4014 4065 4.749099 TCGGATAGACTTAAGACTCGCTAC 59.251 45.833 10.09 0.00 0.00 3.58
4015 4066 4.953667 TCGGATAGACTTAAGACTCGCTA 58.046 43.478 10.09 3.34 0.00 4.26
4016 4067 3.806380 TCGGATAGACTTAAGACTCGCT 58.194 45.455 10.09 0.00 0.00 4.93
4017 4068 4.548991 TTCGGATAGACTTAAGACTCGC 57.451 45.455 10.09 4.16 0.00 5.03
4018 4069 6.301687 TGATTCGGATAGACTTAAGACTCG 57.698 41.667 10.09 8.65 0.00 4.18
4019 4070 7.653647 ACATGATTCGGATAGACTTAAGACTC 58.346 38.462 10.09 0.00 0.00 3.36
4020 4071 7.589958 ACATGATTCGGATAGACTTAAGACT 57.410 36.000 10.09 11.23 0.00 3.24
4021 4072 9.182933 GTAACATGATTCGGATAGACTTAAGAC 57.817 37.037 10.09 2.62 0.00 3.01
4022 4073 8.358148 GGTAACATGATTCGGATAGACTTAAGA 58.642 37.037 10.09 0.00 0.00 2.10
4023 4074 8.141909 TGGTAACATGATTCGGATAGACTTAAG 58.858 37.037 0.00 0.00 46.17 1.85
4024 4075 8.014070 TGGTAACATGATTCGGATAGACTTAA 57.986 34.615 0.00 0.00 46.17 1.85
4025 4076 7.591421 TGGTAACATGATTCGGATAGACTTA 57.409 36.000 0.00 0.00 46.17 2.24
4026 4077 6.479972 TGGTAACATGATTCGGATAGACTT 57.520 37.500 0.00 0.00 46.17 3.01
4043 4094 5.105752 TCATAAAATGCGGCAATTGGTAAC 58.894 37.500 6.82 0.00 0.00 2.50
4044 4095 5.330455 TCATAAAATGCGGCAATTGGTAA 57.670 34.783 6.82 0.00 0.00 2.85
4045 4096 4.991153 TCATAAAATGCGGCAATTGGTA 57.009 36.364 6.82 0.00 0.00 3.25
4046 4097 3.883830 TCATAAAATGCGGCAATTGGT 57.116 38.095 6.82 0.00 0.00 3.67
4047 4098 5.738118 AAATCATAAAATGCGGCAATTGG 57.262 34.783 6.82 0.00 0.00 3.16
4048 4099 6.773080 TCAAAATCATAAAATGCGGCAATTG 58.227 32.000 6.82 0.00 0.00 2.32
4049 4100 6.981762 TCAAAATCATAAAATGCGGCAATT 57.018 29.167 6.82 0.87 0.00 2.32
4050 4101 6.981762 TTCAAAATCATAAAATGCGGCAAT 57.018 29.167 6.82 0.00 0.00 3.56
4051 4102 6.791887 TTTCAAAATCATAAAATGCGGCAA 57.208 29.167 6.82 0.00 0.00 4.52
4052 4103 6.817641 AGATTTCAAAATCATAAAATGCGGCA 59.182 30.769 4.58 4.58 45.59 5.69
4053 4104 7.121272 CAGATTTCAAAATCATAAAATGCGGC 58.879 34.615 15.75 0.00 45.59 6.53
4054 4105 7.623770 CCAGATTTCAAAATCATAAAATGCGG 58.376 34.615 15.75 1.52 45.59 5.69
4055 4106 7.121272 GCCAGATTTCAAAATCATAAAATGCG 58.879 34.615 15.75 2.99 45.59 4.73
4056 4107 7.976826 TGCCAGATTTCAAAATCATAAAATGC 58.023 30.769 15.75 8.59 45.59 3.56
4060 4111 8.948145 CCATTTGCCAGATTTCAAAATCATAAA 58.052 29.630 15.75 11.20 45.59 1.40
4061 4112 8.319881 TCCATTTGCCAGATTTCAAAATCATAA 58.680 29.630 15.75 4.68 45.59 1.90
4062 4113 7.849160 TCCATTTGCCAGATTTCAAAATCATA 58.151 30.769 15.75 0.00 45.59 2.15
4063 4114 6.713276 TCCATTTGCCAGATTTCAAAATCAT 58.287 32.000 15.75 0.00 45.59 2.45
4064 4115 6.111669 TCCATTTGCCAGATTTCAAAATCA 57.888 33.333 15.75 0.00 45.59 2.57
4065 4116 6.457799 GCATCCATTTGCCAGATTTCAAAATC 60.458 38.462 7.27 7.27 39.64 2.17
4066 4117 5.355910 GCATCCATTTGCCAGATTTCAAAAT 59.644 36.000 0.00 0.00 36.02 1.82
4067 4118 4.696402 GCATCCATTTGCCAGATTTCAAAA 59.304 37.500 0.00 0.00 36.02 2.44
4068 4119 4.255301 GCATCCATTTGCCAGATTTCAAA 58.745 39.130 0.00 0.00 36.60 2.69
4069 4120 3.864243 GCATCCATTTGCCAGATTTCAA 58.136 40.909 0.00 0.00 36.60 2.69
4070 4121 3.530265 GCATCCATTTGCCAGATTTCA 57.470 42.857 0.00 0.00 36.60 2.69
4079 4130 1.465777 GCAGTTTTGGCATCCATTTGC 59.534 47.619 0.00 0.00 42.01 3.68
4080 4131 2.768698 TGCAGTTTTGGCATCCATTTG 58.231 42.857 0.00 0.00 36.11 2.32
4088 4139 3.386078 TGTTAAGGAATGCAGTTTTGGCA 59.614 39.130 0.00 0.00 46.66 4.92
4089 4140 3.988819 TGTTAAGGAATGCAGTTTTGGC 58.011 40.909 0.00 0.00 0.00 4.52
4099 4150 8.078596 CTTCTTCAAGAAACCTGTTAAGGAATG 58.921 37.037 0.48 0.00 38.71 2.67
4100 4151 7.998964 TCTTCTTCAAGAAACCTGTTAAGGAAT 59.001 33.333 0.48 0.00 39.77 3.01
4101 4152 7.343357 TCTTCTTCAAGAAACCTGTTAAGGAA 58.657 34.615 0.48 0.00 39.77 3.36
4102 4153 6.895782 TCTTCTTCAAGAAACCTGTTAAGGA 58.104 36.000 0.48 0.00 39.77 3.36
4103 4154 6.768381 ACTCTTCTTCAAGAAACCTGTTAAGG 59.232 38.462 0.48 0.00 42.84 2.69
4104 4155 7.793927 ACTCTTCTTCAAGAAACCTGTTAAG 57.206 36.000 0.48 0.00 38.23 1.85
4105 4156 7.610305 ACAACTCTTCTTCAAGAAACCTGTTAA 59.390 33.333 0.48 0.00 38.23 2.01
4106 4157 7.110155 ACAACTCTTCTTCAAGAAACCTGTTA 58.890 34.615 0.48 0.00 38.23 2.41
4107 4158 5.946377 ACAACTCTTCTTCAAGAAACCTGTT 59.054 36.000 0.48 1.87 38.23 3.16
4108 4159 5.501156 ACAACTCTTCTTCAAGAAACCTGT 58.499 37.500 0.48 0.33 38.23 4.00
4109 4160 7.736447 ATACAACTCTTCTTCAAGAAACCTG 57.264 36.000 0.48 0.00 38.23 4.00
4110 4161 9.442047 CATATACAACTCTTCTTCAAGAAACCT 57.558 33.333 0.48 0.00 38.23 3.50
4111 4162 8.669243 CCATATACAACTCTTCTTCAAGAAACC 58.331 37.037 0.48 0.00 38.23 3.27
4112 4163 9.220767 ACCATATACAACTCTTCTTCAAGAAAC 57.779 33.333 0.48 0.00 38.23 2.78
4113 4164 9.219603 CACCATATACAACTCTTCTTCAAGAAA 57.780 33.333 0.48 0.00 38.23 2.52
4114 4165 7.334421 GCACCATATACAACTCTTCTTCAAGAA 59.666 37.037 0.00 0.00 38.23 2.52
4115 4166 6.818644 GCACCATATACAACTCTTCTTCAAGA 59.181 38.462 0.00 0.00 37.11 3.02
4116 4167 6.595326 TGCACCATATACAACTCTTCTTCAAG 59.405 38.462 0.00 0.00 0.00 3.02
4117 4168 6.472016 TGCACCATATACAACTCTTCTTCAA 58.528 36.000 0.00 0.00 0.00 2.69
4118 4169 6.048732 TGCACCATATACAACTCTTCTTCA 57.951 37.500 0.00 0.00 0.00 3.02
4119 4170 6.183360 GGTTGCACCATATACAACTCTTCTTC 60.183 42.308 5.23 0.00 42.55 2.87
4120 4171 5.648092 GGTTGCACCATATACAACTCTTCTT 59.352 40.000 5.23 0.00 42.55 2.52
4121 4172 5.186198 GGTTGCACCATATACAACTCTTCT 58.814 41.667 5.23 0.00 42.55 2.85
4122 4173 4.941263 TGGTTGCACCATATACAACTCTTC 59.059 41.667 4.16 0.00 44.79 2.87
4123 4174 4.917385 TGGTTGCACCATATACAACTCTT 58.083 39.130 4.16 0.00 44.79 2.85
4124 4175 4.568072 TGGTTGCACCATATACAACTCT 57.432 40.909 4.16 0.00 44.79 3.24
4143 4194 3.059352 AGGATCGACAAAACCTTCTGG 57.941 47.619 0.00 0.00 39.83 3.86
4144 4195 5.122396 CCTTTAGGATCGACAAAACCTTCTG 59.878 44.000 0.00 0.00 37.39 3.02
4145 4196 5.221864 ACCTTTAGGATCGACAAAACCTTCT 60.222 40.000 2.06 0.00 38.94 2.85
4146 4197 5.001874 ACCTTTAGGATCGACAAAACCTTC 58.998 41.667 2.06 0.00 38.94 3.46
4147 4198 4.760204 CACCTTTAGGATCGACAAAACCTT 59.240 41.667 2.06 0.00 38.94 3.50
4148 4199 4.324267 CACCTTTAGGATCGACAAAACCT 58.676 43.478 2.06 0.00 38.94 3.50
4149 4200 3.119955 GCACCTTTAGGATCGACAAAACC 60.120 47.826 2.06 0.00 38.94 3.27
4150 4201 3.751698 AGCACCTTTAGGATCGACAAAAC 59.248 43.478 2.06 0.00 38.94 2.43
4151 4202 4.015872 AGCACCTTTAGGATCGACAAAA 57.984 40.909 2.06 0.00 38.94 2.44
4152 4203 3.695830 AGCACCTTTAGGATCGACAAA 57.304 42.857 2.06 0.00 38.94 2.83
4153 4204 4.020928 TGTTAGCACCTTTAGGATCGACAA 60.021 41.667 2.06 0.00 38.94 3.18
4154 4205 3.512329 TGTTAGCACCTTTAGGATCGACA 59.488 43.478 2.06 2.62 38.94 4.35
4155 4206 4.119442 TGTTAGCACCTTTAGGATCGAC 57.881 45.455 2.06 0.40 38.94 4.20
4156 4207 4.811969 TTGTTAGCACCTTTAGGATCGA 57.188 40.909 2.06 0.00 38.94 3.59
4157 4208 4.935808 ACTTTGTTAGCACCTTTAGGATCG 59.064 41.667 2.06 0.00 38.94 3.69
4158 4209 5.705905 ACACTTTGTTAGCACCTTTAGGATC 59.294 40.000 2.06 0.00 38.94 3.36
4159 4210 5.631119 ACACTTTGTTAGCACCTTTAGGAT 58.369 37.500 2.06 0.00 38.94 3.24
4160 4211 5.043737 ACACTTTGTTAGCACCTTTAGGA 57.956 39.130 2.06 0.00 38.94 2.94
4161 4212 5.298276 TCAACACTTTGTTAGCACCTTTAGG 59.702 40.000 0.00 0.00 38.77 2.69
4162 4213 6.371809 TCAACACTTTGTTAGCACCTTTAG 57.628 37.500 0.00 0.00 38.77 1.85
4163 4214 6.679392 GCTTCAACACTTTGTTAGCACCTTTA 60.679 38.462 8.34 0.00 38.77 1.85
4164 4215 5.650543 CTTCAACACTTTGTTAGCACCTTT 58.349 37.500 0.00 0.00 38.77 3.11
4165 4216 4.440112 GCTTCAACACTTTGTTAGCACCTT 60.440 41.667 8.34 0.00 38.77 3.50
4166 4217 3.066760 GCTTCAACACTTTGTTAGCACCT 59.933 43.478 8.34 0.00 38.77 4.00
4167 4218 3.066760 AGCTTCAACACTTTGTTAGCACC 59.933 43.478 13.58 0.00 38.77 5.01
4168 4219 4.282873 GAGCTTCAACACTTTGTTAGCAC 58.717 43.478 13.58 6.20 38.77 4.40
4169 4220 3.315191 GGAGCTTCAACACTTTGTTAGCA 59.685 43.478 13.58 0.00 38.77 3.49
4170 4221 3.315191 TGGAGCTTCAACACTTTGTTAGC 59.685 43.478 0.00 5.91 38.77 3.09
4171 4222 4.555511 GCTGGAGCTTCAACACTTTGTTAG 60.556 45.833 0.00 0.00 36.91 2.34
4172 4223 3.315191 GCTGGAGCTTCAACACTTTGTTA 59.685 43.478 0.00 0.00 36.91 2.41
4173 4224 2.099756 GCTGGAGCTTCAACACTTTGTT 59.900 45.455 0.00 0.00 38.48 2.83
4174 4225 1.678101 GCTGGAGCTTCAACACTTTGT 59.322 47.619 0.00 0.00 38.21 2.83
4175 4226 1.334419 CGCTGGAGCTTCAACACTTTG 60.334 52.381 0.00 0.00 39.32 2.77
4176 4227 0.947244 CGCTGGAGCTTCAACACTTT 59.053 50.000 0.00 0.00 39.32 2.66
4177 4228 0.106708 TCGCTGGAGCTTCAACACTT 59.893 50.000 0.00 0.00 39.32 3.16
4178 4229 0.322975 ATCGCTGGAGCTTCAACACT 59.677 50.000 0.00 0.00 39.32 3.55
4179 4230 0.723981 GATCGCTGGAGCTTCAACAC 59.276 55.000 0.00 0.00 39.32 3.32
4180 4231 0.391661 GGATCGCTGGAGCTTCAACA 60.392 55.000 0.00 0.00 39.32 3.33
4181 4232 0.391661 TGGATCGCTGGAGCTTCAAC 60.392 55.000 0.00 0.00 39.32 3.18
4182 4233 0.543277 ATGGATCGCTGGAGCTTCAA 59.457 50.000 0.00 0.00 39.32 2.69
4183 4234 0.105593 GATGGATCGCTGGAGCTTCA 59.894 55.000 0.00 0.00 39.32 3.02
4184 4235 0.392336 AGATGGATCGCTGGAGCTTC 59.608 55.000 0.00 0.00 39.32 3.86
4185 4236 1.709578 TAGATGGATCGCTGGAGCTT 58.290 50.000 0.00 0.00 39.32 3.74
4186 4237 1.549620 CATAGATGGATCGCTGGAGCT 59.450 52.381 0.00 0.00 39.32 4.09
4187 4238 2.007360 CATAGATGGATCGCTGGAGC 57.993 55.000 0.00 0.00 37.78 4.70
4199 4250 1.945394 GCTTGCACCAGTCCATAGATG 59.055 52.381 0.00 0.00 0.00 2.90
4200 4251 1.561076 TGCTTGCACCAGTCCATAGAT 59.439 47.619 0.00 0.00 0.00 1.98
4201 4252 0.983467 TGCTTGCACCAGTCCATAGA 59.017 50.000 0.00 0.00 0.00 1.98
4202 4253 1.945394 GATGCTTGCACCAGTCCATAG 59.055 52.381 0.00 0.00 0.00 2.23
4203 4254 1.561076 AGATGCTTGCACCAGTCCATA 59.439 47.619 0.00 0.00 0.00 2.74
4204 4255 0.330604 AGATGCTTGCACCAGTCCAT 59.669 50.000 0.00 0.00 0.00 3.41
4205 4256 0.321919 GAGATGCTTGCACCAGTCCA 60.322 55.000 0.00 0.00 0.00 4.02
4206 4257 1.364626 CGAGATGCTTGCACCAGTCC 61.365 60.000 0.00 0.00 0.00 3.85
4207 4258 1.364626 CCGAGATGCTTGCACCAGTC 61.365 60.000 0.00 0.00 0.00 3.51
4208 4259 1.376424 CCGAGATGCTTGCACCAGT 60.376 57.895 0.00 0.00 0.00 4.00
4209 4260 1.078918 TCCGAGATGCTTGCACCAG 60.079 57.895 0.00 0.00 0.00 4.00
4210 4261 1.078918 CTCCGAGATGCTTGCACCA 60.079 57.895 0.00 0.00 0.00 4.17
4211 4262 0.674895 AACTCCGAGATGCTTGCACC 60.675 55.000 1.33 0.00 0.00 5.01
4212 4263 0.445436 CAACTCCGAGATGCTTGCAC 59.555 55.000 1.33 0.00 0.00 4.57
4213 4264 0.674581 CCAACTCCGAGATGCTTGCA 60.675 55.000 1.33 0.00 0.00 4.08
4214 4265 0.391661 TCCAACTCCGAGATGCTTGC 60.392 55.000 1.33 0.00 0.00 4.01
4215 4266 2.099141 TTCCAACTCCGAGATGCTTG 57.901 50.000 1.33 0.00 0.00 4.01
4216 4267 4.696479 ATATTCCAACTCCGAGATGCTT 57.304 40.909 1.33 0.00 0.00 3.91
4217 4268 4.321304 CGTATATTCCAACTCCGAGATGCT 60.321 45.833 1.33 0.00 0.00 3.79
4218 4269 3.921021 CGTATATTCCAACTCCGAGATGC 59.079 47.826 1.33 0.00 0.00 3.91
4219 4270 3.921021 GCGTATATTCCAACTCCGAGATG 59.079 47.826 1.33 0.00 0.00 2.90
4220 4271 3.827302 AGCGTATATTCCAACTCCGAGAT 59.173 43.478 1.33 0.00 0.00 2.75
4221 4272 3.220110 AGCGTATATTCCAACTCCGAGA 58.780 45.455 1.33 0.00 0.00 4.04
4222 4273 3.644884 AGCGTATATTCCAACTCCGAG 57.355 47.619 0.00 0.00 0.00 4.63
4223 4274 4.116961 CAAAGCGTATATTCCAACTCCGA 58.883 43.478 0.00 0.00 0.00 4.55
4224 4275 4.116961 TCAAAGCGTATATTCCAACTCCG 58.883 43.478 0.00 0.00 0.00 4.63
4225 4276 5.758296 TCATCAAAGCGTATATTCCAACTCC 59.242 40.000 0.00 0.00 0.00 3.85
4226 4277 6.844696 TCATCAAAGCGTATATTCCAACTC 57.155 37.500 0.00 0.00 0.00 3.01
4227 4278 6.767902 ACATCATCAAAGCGTATATTCCAACT 59.232 34.615 0.00 0.00 0.00 3.16
4228 4279 6.852853 CACATCATCAAAGCGTATATTCCAAC 59.147 38.462 0.00 0.00 0.00 3.77
4229 4280 6.765512 TCACATCATCAAAGCGTATATTCCAA 59.234 34.615 0.00 0.00 0.00 3.53
4230 4281 6.287525 TCACATCATCAAAGCGTATATTCCA 58.712 36.000 0.00 0.00 0.00 3.53
4231 4282 6.785488 TCACATCATCAAAGCGTATATTCC 57.215 37.500 0.00 0.00 0.00 3.01
4235 4286 8.282592 GCTTTTATCACATCATCAAAGCGTATA 58.717 33.333 0.00 0.00 37.46 1.47
4236 4287 7.134815 GCTTTTATCACATCATCAAAGCGTAT 58.865 34.615 0.00 0.00 37.46 3.06
4237 4288 6.093357 TGCTTTTATCACATCATCAAAGCGTA 59.907 34.615 9.26 0.00 45.92 4.42
4238 4289 5.106197 TGCTTTTATCACATCATCAAAGCGT 60.106 36.000 9.26 0.00 45.92 5.07
4239 4290 5.334319 TGCTTTTATCACATCATCAAAGCG 58.666 37.500 9.26 0.00 45.92 4.68
4240 4291 8.912658 CATATGCTTTTATCACATCATCAAAGC 58.087 33.333 7.36 7.36 44.14 3.51
4241 4292 9.406828 CCATATGCTTTTATCACATCATCAAAG 57.593 33.333 0.00 0.00 0.00 2.77
4242 4293 8.916062 ACCATATGCTTTTATCACATCATCAAA 58.084 29.630 0.00 0.00 0.00 2.69
4243 4294 8.467963 ACCATATGCTTTTATCACATCATCAA 57.532 30.769 0.00 0.00 0.00 2.57
4244 4295 8.467963 AACCATATGCTTTTATCACATCATCA 57.532 30.769 0.00 0.00 0.00 3.07
4245 4296 9.754382 AAAACCATATGCTTTTATCACATCATC 57.246 29.630 6.91 0.00 0.00 2.92
4256 4307 9.461312 TCAGTCTGTATAAAACCATATGCTTTT 57.539 29.630 12.24 12.24 0.00 2.27
4257 4308 9.632638 ATCAGTCTGTATAAAACCATATGCTTT 57.367 29.630 0.00 2.01 0.00 3.51
4258 4309 9.060347 CATCAGTCTGTATAAAACCATATGCTT 57.940 33.333 0.00 0.00 0.00 3.91
4259 4310 7.663081 CCATCAGTCTGTATAAAACCATATGCT 59.337 37.037 0.00 0.00 0.00 3.79
4260 4311 7.445402 ACCATCAGTCTGTATAAAACCATATGC 59.555 37.037 0.00 0.00 0.00 3.14
4261 4312 8.777413 CACCATCAGTCTGTATAAAACCATATG 58.223 37.037 0.00 0.00 0.00 1.78
4262 4313 8.713971 TCACCATCAGTCTGTATAAAACCATAT 58.286 33.333 0.00 0.00 0.00 1.78
4263 4314 8.084985 TCACCATCAGTCTGTATAAAACCATA 57.915 34.615 0.00 0.00 0.00 2.74
4264 4315 6.957631 TCACCATCAGTCTGTATAAAACCAT 58.042 36.000 0.00 0.00 0.00 3.55
4265 4316 6.367374 TCACCATCAGTCTGTATAAAACCA 57.633 37.500 0.00 0.00 0.00 3.67
4266 4317 6.183360 GCTTCACCATCAGTCTGTATAAAACC 60.183 42.308 0.00 0.00 0.00 3.27
4267 4318 6.183360 GGCTTCACCATCAGTCTGTATAAAAC 60.183 42.308 0.00 0.00 38.86 2.43
4268 4319 5.880332 GGCTTCACCATCAGTCTGTATAAAA 59.120 40.000 0.00 0.00 38.86 1.52
4269 4320 5.189736 AGGCTTCACCATCAGTCTGTATAAA 59.810 40.000 0.00 0.00 43.14 1.40
4270 4321 4.716784 AGGCTTCACCATCAGTCTGTATAA 59.283 41.667 0.00 0.00 43.14 0.98
4271 4322 4.100035 CAGGCTTCACCATCAGTCTGTATA 59.900 45.833 0.00 0.00 43.14 1.47
4272 4323 3.110705 AGGCTTCACCATCAGTCTGTAT 58.889 45.455 0.00 0.00 43.14 2.29
4273 4324 2.234661 CAGGCTTCACCATCAGTCTGTA 59.765 50.000 0.00 0.00 43.14 2.74
4274 4325 1.002888 CAGGCTTCACCATCAGTCTGT 59.997 52.381 0.00 0.00 43.14 3.41
4275 4326 1.002888 ACAGGCTTCACCATCAGTCTG 59.997 52.381 0.00 0.00 46.43 3.51
4276 4327 1.356124 ACAGGCTTCACCATCAGTCT 58.644 50.000 0.00 0.00 43.14 3.24
4277 4328 3.944476 ACAGGCTTCACCATCAGTC 57.056 52.632 0.00 0.00 43.14 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.