Multiple sequence alignment - TraesCS7D01G544700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G544700 chr7D 100.000 4121 0 0 1 4121 632160876 632164996 0.000000e+00 7611.0
1 TraesCS7D01G544700 chr7D 88.112 429 42 4 3251 3671 562614166 562613739 6.150000e-138 501.0
2 TraesCS7D01G544700 chr7D 89.490 314 32 1 3664 3977 562613544 562613232 2.990000e-106 396.0
3 TraesCS7D01G544700 chr7D 93.625 251 16 0 2939 3189 632175751 632176001 3.890000e-100 375.0
4 TraesCS7D01G544700 chr7D 77.891 294 47 12 3248 3528 587290484 587290196 2.550000e-37 167.0
5 TraesCS7D01G544700 chr7D 98.824 85 1 0 518 602 632161477 632161393 7.140000e-33 152.0
6 TraesCS7D01G544700 chr7B 95.305 1981 63 4 1753 3713 745143368 745145338 0.000000e+00 3116.0
7 TraesCS7D01G544700 chr7B 95.447 571 25 1 968 1537 745141592 745142162 0.000000e+00 909.0
8 TraesCS7D01G544700 chr7B 93.798 387 15 4 69 452 745140523 745140903 1.280000e-159 573.0
9 TraesCS7D01G544700 chr7B 88.922 334 13 14 600 933 745141012 745141321 1.390000e-104 390.0
10 TraesCS7D01G544700 chr7B 92.271 207 13 2 1546 1749 745143079 745143285 1.450000e-74 291.0
11 TraesCS7D01G544700 chr7B 94.886 176 6 3 1 173 745140347 745140522 5.250000e-69 272.0
12 TraesCS7D01G544700 chr7B 93.662 142 9 0 3980 4121 580101461 580101320 3.230000e-51 213.0
13 TraesCS7D01G544700 chr7B 89.873 158 16 0 3961 4118 745145372 745145529 1.940000e-48 204.0
14 TraesCS7D01G544700 chr7B 82.051 234 20 8 1537 1748 745142553 745142786 3.270000e-41 180.0
15 TraesCS7D01G544700 chr7B 94.444 90 4 1 514 602 432933328 432933239 2.000000e-28 137.0
16 TraesCS7D01G544700 chr7B 91.579 95 7 1 518 611 465970583 465970489 3.340000e-26 130.0
17 TraesCS7D01G544700 chr1A 94.341 1290 67 3 1837 3126 6423493 6422210 0.000000e+00 1973.0
18 TraesCS7D01G544700 chr1A 91.748 412 30 2 992 1399 6424463 6424052 1.660000e-158 569.0
19 TraesCS7D01G544700 chr1A 95.556 90 4 0 787 876 6424846 6424757 1.190000e-30 145.0
20 TraesCS7D01G544700 chr1A 94.444 90 4 1 514 602 299072432 299072343 2.000000e-28 137.0
21 TraesCS7D01G544700 chr1A 76.923 286 33 15 183 452 6427042 6426774 9.300000e-27 132.0
22 TraesCS7D01G544700 chr1A 98.276 58 1 0 1477 1534 6423925 6423868 7.290000e-18 102.0
23 TraesCS7D01G544700 chr1A 100.000 31 0 0 753 783 6424893 6424863 1.600000e-04 58.4
24 TraesCS7D01G544700 chr2A 90.046 1296 110 11 1838 3122 748446189 748444902 0.000000e+00 1661.0
25 TraesCS7D01G544700 chr2A 79.834 362 50 15 951 1293 748447003 748446646 4.120000e-60 243.0
26 TraesCS7D01G544700 chr2A 82.222 90 15 1 3256 3345 40376133 40376221 4.420000e-10 76.8
27 TraesCS7D01G544700 chr2A 92.157 51 2 2 1699 1747 632501806 632501856 2.060000e-08 71.3
28 TraesCS7D01G544700 chr2D 89.946 1293 116 7 1840 3122 617896275 617894987 0.000000e+00 1655.0
29 TraesCS7D01G544700 chr2D 82.099 324 45 7 982 1293 617897054 617896732 8.780000e-67 265.0
30 TraesCS7D01G544700 chr2D 92.617 149 10 1 3974 4121 512045981 512046129 3.230000e-51 213.0
31 TraesCS7D01G544700 chr2D 91.781 146 12 0 3976 4121 67900988 67901133 1.940000e-48 204.0
32 TraesCS7D01G544700 chr2D 95.652 69 2 1 1679 1746 626945873 626945941 4.360000e-20 110.0
33 TraesCS7D01G544700 chr2B 89.482 1293 123 7 1838 3122 753799763 753801050 0.000000e+00 1622.0
34 TraesCS7D01G544700 chr2B 77.962 422 53 26 998 1394 753798966 753799372 1.150000e-55 228.0
35 TraesCS7D01G544700 chr2B 89.308 159 13 4 3966 4121 264262219 264262062 3.250000e-46 196.0
36 TraesCS7D01G544700 chr2B 96.591 88 3 0 517 604 525815571 525815658 3.320000e-31 147.0
37 TraesCS7D01G544700 chr2B 94.624 93 3 2 515 605 489001676 489001584 4.290000e-30 143.0
38 TraesCS7D01G544700 chr3D 89.583 432 36 2 3248 3671 164285519 164285089 1.300000e-149 540.0
39 TraesCS7D01G544700 chr3D 94.444 90 5 0 513 602 67728063 67728152 5.550000e-29 139.0
40 TraesCS7D01G544700 chr3D 82.278 79 8 6 1859 1934 591826706 591826631 3.440000e-06 63.9
41 TraesCS7D01G544700 chr1D 82.326 645 87 16 3246 3865 28174604 28175246 6.060000e-148 534.0
42 TraesCS7D01G544700 chr1D 93.007 143 9 1 3980 4121 258627680 258627822 1.500000e-49 207.0
43 TraesCS7D01G544700 chr1D 91.837 98 6 2 518 613 474055591 474055688 7.190000e-28 135.0
44 TraesCS7D01G544700 chr1D 94.382 89 4 1 515 602 485506135 485506223 7.190000e-28 135.0
45 TraesCS7D01G544700 chr7A 87.731 432 45 2 3248 3671 648210473 648210042 7.960000e-137 497.0
46 TraesCS7D01G544700 chr7A 89.172 314 33 1 3664 3977 648209848 648209536 1.390000e-104 390.0
47 TraesCS7D01G544700 chr7A 88.854 314 34 1 3664 3977 648298726 648298414 6.460000e-103 385.0
48 TraesCS7D01G544700 chr5D 86.321 424 48 8 3248 3671 427152948 427153361 1.750000e-123 453.0
49 TraesCS7D01G544700 chr5D 85.412 425 52 9 3248 3671 426979560 426979975 2.280000e-117 433.0
50 TraesCS7D01G544700 chr5D 84.988 433 54 5 3248 3671 533535047 533534617 2.940000e-116 429.0
51 TraesCS7D01G544700 chr5D 81.416 113 20 1 3239 3350 504578973 504579085 1.580000e-14 91.6
52 TraesCS7D01G544700 chr5D 89.706 68 5 2 1681 1747 385942373 385942439 7.340000e-13 86.1
53 TraesCS7D01G544700 chr5B 80.062 642 101 19 3248 3864 448876027 448876666 6.280000e-123 451.0
54 TraesCS7D01G544700 chr5B 93.750 96 4 2 513 606 676928099 676928194 4.290000e-30 143.0
55 TraesCS7D01G544700 chr5B 93.684 95 5 1 516 609 45261633 45261727 1.540000e-29 141.0
56 TraesCS7D01G544700 chr5B 81.731 104 17 2 3248 3350 695745525 695745627 7.340000e-13 86.1
57 TraesCS7D01G544700 chr5B 86.301 73 8 2 3248 3319 694705001 694705072 1.230000e-10 78.7
58 TraesCS7D01G544700 chr5B 80.000 105 17 4 3248 3350 694889335 694889437 1.590000e-09 75.0
59 TraesCS7D01G544700 chr5B 79.048 105 18 4 3248 3350 694977307 694977409 7.390000e-08 69.4
60 TraesCS7D01G544700 chr5B 79.048 105 18 4 3248 3350 695177671 695177773 7.390000e-08 69.4
61 TraesCS7D01G544700 chr6B 90.476 315 27 3 3665 3977 26080563 26080250 2.960000e-111 412.0
62 TraesCS7D01G544700 chr6B 86.139 303 40 2 3675 3977 504132848 504132548 3.970000e-85 326.0
63 TraesCS7D01G544700 chr4A 88.276 290 31 3 3689 3977 672190570 672190283 1.100000e-90 344.0
64 TraesCS7D01G544700 chr4A 87.586 290 33 3 3689 3977 672284255 672283968 2.370000e-87 333.0
65 TraesCS7D01G544700 chr6A 87.973 291 34 1 3687 3977 457046492 457046781 3.940000e-90 342.0
66 TraesCS7D01G544700 chr6A 93.617 94 4 2 518 609 563554408 563554315 5.550000e-29 139.0
67 TraesCS7D01G544700 chr3B 85.911 291 40 1 3687 3977 713884382 713884093 4.000000e-80 309.0
68 TraesCS7D01G544700 chr3B 95.556 90 3 1 514 602 787555949 787556038 4.290000e-30 143.0
69 TraesCS7D01G544700 chr3B 92.857 70 4 1 1679 1747 818901980 818902049 2.620000e-17 100.0
70 TraesCS7D01G544700 chr3B 80.000 105 15 6 1833 1934 792858619 792858720 5.710000e-09 73.1
71 TraesCS7D01G544700 chr3A 92.958 142 10 0 3980 4121 523423198 523423057 1.500000e-49 207.0
72 TraesCS7D01G544700 chr3A 80.000 110 16 6 1828 1934 722275740 722275846 4.420000e-10 76.8
73 TraesCS7D01G544700 chr5A 91.781 146 12 0 3976 4121 21169789 21169934 1.940000e-48 204.0
74 TraesCS7D01G544700 chr5A 92.233 103 5 3 503 604 113799651 113799751 4.290000e-30 143.0
75 TraesCS7D01G544700 chr4D 91.781 146 12 0 3976 4121 147509779 147509924 1.940000e-48 204.0
76 TraesCS7D01G544700 chr4D 95.455 88 4 0 515 602 67233370 67233283 1.540000e-29 141.0
77 TraesCS7D01G544700 chr4D 92.708 96 5 2 509 602 481440712 481440617 2.000000e-28 137.0
78 TraesCS7D01G544700 chr4D 95.402 87 3 1 518 603 481440617 481440703 2.000000e-28 137.0
79 TraesCS7D01G544700 chr4D 94.318 88 5 0 515 602 67233280 67233367 7.190000e-28 135.0
80 TraesCS7D01G544700 chr4D 93.407 91 5 1 514 603 16403448 16403538 2.580000e-27 134.0
81 TraesCS7D01G544700 chr4B 95.455 88 3 1 516 602 68126962 68126875 5.550000e-29 139.0
82 TraesCS7D01G544700 chr4B 95.402 87 3 1 518 603 527979223 527979137 2.000000e-28 137.0
83 TraesCS7D01G544700 chr4B 93.478 92 6 0 513 604 591904814 591904905 2.000000e-28 137.0
84 TraesCS7D01G544700 chr6D 92.708 96 5 2 514 607 458997629 458997534 2.000000e-28 137.0
85 TraesCS7D01G544700 chr6D 94.253 87 4 1 518 603 458997540 458997626 9.300000e-27 132.0
86 TraesCS7D01G544700 chr6D 90.625 96 6 3 518 611 52822040 52821946 1.560000e-24 124.0
87 TraesCS7D01G544700 chr6D 91.667 72 5 1 1677 1747 40534160 40534231 9.430000e-17 99.0
88 TraesCS7D01G544700 chrUn 93.333 90 5 1 515 603 228573509 228573598 9.300000e-27 132.0
89 TraesCS7D01G544700 chrUn 93.333 90 5 1 515 603 330649336 330649247 9.300000e-27 132.0
90 TraesCS7D01G544700 chrUn 93.103 87 5 1 518 603 31480469 31480555 4.320000e-25 126.0
91 TraesCS7D01G544700 chrUn 93.103 87 5 1 517 602 37384416 37384502 4.320000e-25 126.0
92 TraesCS7D01G544700 chrUn 93.103 87 5 1 517 602 37384503 37384417 4.320000e-25 126.0
93 TraesCS7D01G544700 chrUn 93.023 86 5 1 518 602 31480554 31480469 1.560000e-24 124.0
94 TraesCS7D01G544700 chrUn 93.023 86 5 1 518 602 228573597 228573512 1.560000e-24 124.0
95 TraesCS7D01G544700 chrUn 93.023 86 5 1 518 602 330649248 330649333 1.560000e-24 124.0
96 TraesCS7D01G544700 chrUn 92.045 88 5 2 517 602 95223161 95223248 5.590000e-24 122.0
97 TraesCS7D01G544700 chrUn 92.045 88 6 1 516 602 272887338 272887425 5.590000e-24 122.0
98 TraesCS7D01G544700 chrUn 87.736 106 12 1 516 620 299203004 299202899 5.590000e-24 122.0
99 TraesCS7D01G544700 chr1B 88.889 108 10 2 496 602 97376075 97376181 9.300000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G544700 chr7D 632160876 632164996 4120 False 7611.000000 7611 100.000000 1 4121 1 chr7D.!!$F1 4120
1 TraesCS7D01G544700 chr7D 562613232 562614166 934 True 448.500000 501 88.801000 3251 3977 2 chr7D.!!$R3 726
2 TraesCS7D01G544700 chr7B 745140347 745145529 5182 False 741.875000 3116 91.569125 1 4118 8 chr7B.!!$F1 4117
3 TraesCS7D01G544700 chr1A 6422210 6427042 4832 True 496.566667 1973 92.807333 183 3126 6 chr1A.!!$R2 2943
4 TraesCS7D01G544700 chr2A 748444902 748447003 2101 True 952.000000 1661 84.940000 951 3122 2 chr2A.!!$R1 2171
5 TraesCS7D01G544700 chr2D 617894987 617897054 2067 True 960.000000 1655 86.022500 982 3122 2 chr2D.!!$R1 2140
6 TraesCS7D01G544700 chr2B 753798966 753801050 2084 False 925.000000 1622 83.722000 998 3122 2 chr2B.!!$F2 2124
7 TraesCS7D01G544700 chr1D 28174604 28175246 642 False 534.000000 534 82.326000 3246 3865 1 chr1D.!!$F1 619
8 TraesCS7D01G544700 chr7A 648209536 648210473 937 True 443.500000 497 88.451500 3248 3977 2 chr7A.!!$R2 729
9 TraesCS7D01G544700 chr5B 448876027 448876666 639 False 451.000000 451 80.062000 3248 3864 1 chr5B.!!$F2 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 719 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.0 0.00 0.0 0.0 4.18 F
1152 3127 0.249120 TCTACATGGGCCTCGTTGTG 59.751 55.0 4.53 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2514 5609 1.538047 ACATCTTGCGCATGAGGTTT 58.462 45.0 30.35 14.67 0.00 3.27 R
3127 6234 0.385223 CGTAGCCGACGTAGGTATGC 60.385 60.0 16.51 8.10 46.86 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.987413 TGACGCCATCAAATTGTGAC 57.013 45.000 0.00 0.00 39.72 3.67
96 98 5.104444 TGGGCTTGCCATGATCAAATTAATT 60.104 36.000 14.04 0.00 0.00 1.40
130 132 1.068333 GTTAGGGCAAGTACGACGTCA 60.068 52.381 17.16 0.00 0.00 4.35
131 133 0.523072 TAGGGCAAGTACGACGTCAC 59.477 55.000 17.16 7.17 0.00 3.67
215 327 1.374758 CTCGTGAGGGTGAACCAGC 60.375 63.158 1.16 0.00 43.89 4.85
216 328 1.821061 CTCGTGAGGGTGAACCAGCT 61.821 60.000 1.16 0.00 43.89 4.24
217 329 1.669115 CGTGAGGGTGAACCAGCTG 60.669 63.158 6.78 6.78 43.89 4.24
257 369 2.614057 GGGTGAAGATAGTCCAATTGCG 59.386 50.000 0.00 0.00 0.00 4.85
317 429 6.545666 TGCAAAGATTGATTAATACCACGGAT 59.454 34.615 0.00 0.00 0.00 4.18
441 580 3.376347 CACGCACGTGGTTTTATGG 57.624 52.632 18.88 0.00 42.00 2.74
442 581 0.589223 CACGCACGTGGTTTTATGGT 59.411 50.000 18.88 0.00 42.00 3.55
452 591 9.570488 GCACGTGGTTTTATGGTTTAATATTTA 57.430 29.630 18.88 0.00 0.00 1.40
518 703 5.956642 TGAACGCACACACTAAGATATGTA 58.043 37.500 0.00 0.00 0.00 2.29
519 704 5.803461 TGAACGCACACACTAAGATATGTAC 59.197 40.000 0.00 0.00 0.00 2.90
520 705 5.578005 ACGCACACACTAAGATATGTACT 57.422 39.130 0.00 0.00 0.00 2.73
521 706 5.579718 ACGCACACACTAAGATATGTACTC 58.420 41.667 0.00 0.00 0.00 2.59
522 707 4.976731 CGCACACACTAAGATATGTACTCC 59.023 45.833 0.00 0.00 0.00 3.85
523 708 5.290386 GCACACACTAAGATATGTACTCCC 58.710 45.833 0.00 0.00 0.00 4.30
524 709 5.069251 GCACACACTAAGATATGTACTCCCT 59.931 44.000 0.00 0.00 0.00 4.20
526 711 5.834204 ACACACTAAGATATGTACTCCCTCC 59.166 44.000 0.00 0.00 0.00 4.30
528 713 5.071370 CACTAAGATATGTACTCCCTCCGT 58.929 45.833 0.00 0.00 0.00 4.69
530 715 5.769162 ACTAAGATATGTACTCCCTCCGTTC 59.231 44.000 0.00 0.00 0.00 3.95
532 717 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
534 719 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
535 720 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
536 721 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
538 723 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
539 724 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
540 725 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
542 727 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
543 728 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
544 729 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
547 732 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
548 733 0.452987 TCCGATTTACTCGTCGTGGG 59.547 55.000 0.00 0.00 46.18 4.61
550 735 1.403249 CCGATTTACTCGTCGTGGGTT 60.403 52.381 0.00 0.00 46.18 4.11
553 738 3.545078 CGATTTACTCGTCGTGGGTTTAG 59.455 47.826 0.00 0.00 42.56 1.85
554 739 4.488879 GATTTACTCGTCGTGGGTTTAGT 58.511 43.478 0.00 0.00 0.00 2.24
555 740 4.320608 TTTACTCGTCGTGGGTTTAGTT 57.679 40.909 0.00 0.00 0.00 2.24
556 741 2.896745 ACTCGTCGTGGGTTTAGTTT 57.103 45.000 0.00 0.00 0.00 2.66
557 742 5.446143 TTACTCGTCGTGGGTTTAGTTTA 57.554 39.130 0.00 0.00 0.00 2.01
558 743 4.320608 ACTCGTCGTGGGTTTAGTTTAA 57.679 40.909 0.00 0.00 0.00 1.52
559 744 4.886579 ACTCGTCGTGGGTTTAGTTTAAT 58.113 39.130 0.00 0.00 0.00 1.40
560 745 5.299949 ACTCGTCGTGGGTTTAGTTTAATT 58.700 37.500 0.00 0.00 0.00 1.40
561 746 5.759763 ACTCGTCGTGGGTTTAGTTTAATTT 59.240 36.000 0.00 0.00 0.00 1.82
562 747 6.928492 ACTCGTCGTGGGTTTAGTTTAATTTA 59.072 34.615 0.00 0.00 0.00 1.40
563 748 7.440856 ACTCGTCGTGGGTTTAGTTTAATTTAA 59.559 33.333 0.00 0.00 0.00 1.52
564 749 8.147642 TCGTCGTGGGTTTAGTTTAATTTAAA 57.852 30.769 0.00 0.00 0.00 1.52
565 750 8.067189 TCGTCGTGGGTTTAGTTTAATTTAAAC 58.933 33.333 19.74 19.74 46.36 2.01
578 763 8.203017 GTTTAATTTAAACTAAACCCACGACG 57.797 34.615 17.43 0.00 43.50 5.12
579 764 7.721286 TTAATTTAAACTAAACCCACGACGA 57.279 32.000 0.00 0.00 0.00 4.20
580 765 5.851047 ATTTAAACTAAACCCACGACGAG 57.149 39.130 0.00 0.00 0.00 4.18
581 766 2.896745 AAACTAAACCCACGACGAGT 57.103 45.000 0.00 0.00 0.00 4.18
582 767 5.446143 TTAAACTAAACCCACGACGAGTA 57.554 39.130 0.00 0.00 0.00 2.59
583 768 4.320608 AAACTAAACCCACGACGAGTAA 57.679 40.909 0.00 0.00 0.00 2.24
584 769 4.320608 AACTAAACCCACGACGAGTAAA 57.679 40.909 0.00 0.00 0.00 2.01
586 771 4.488879 ACTAAACCCACGACGAGTAAATC 58.511 43.478 0.00 0.00 0.00 2.17
685 1318 4.201990 CCACCTGTCCGTACTACTAATGAC 60.202 50.000 0.00 0.00 0.00 3.06
686 1319 4.639310 CACCTGTCCGTACTACTAATGACT 59.361 45.833 0.00 0.00 0.00 3.41
695 1328 7.979537 TCCGTACTACTAATGACTTTACTCGTA 59.020 37.037 0.00 0.00 0.00 3.43
702 1335 8.976986 ACTAATGACTTTACTCGTATTCGTTT 57.023 30.769 0.00 0.00 38.33 3.60
900 2638 9.868277 GAACTCTATAATCCATCCAACTGATAG 57.132 37.037 0.00 0.00 30.56 2.08
901 2639 8.372877 ACTCTATAATCCATCCAACTGATAGG 57.627 38.462 0.00 0.00 30.56 2.57
902 2640 8.180165 ACTCTATAATCCATCCAACTGATAGGA 58.820 37.037 0.00 0.00 36.07 2.94
912 2650 3.230134 CAACTGATAGGAGGAGGAGGAG 58.770 54.545 0.00 0.00 0.00 3.69
933 2671 5.067805 GGAGGAAGTTCAATCTCTCTCTCTC 59.932 48.000 5.01 0.00 0.00 3.20
934 2672 5.831103 AGGAAGTTCAATCTCTCTCTCTCT 58.169 41.667 5.01 0.00 0.00 3.10
935 2673 5.888161 AGGAAGTTCAATCTCTCTCTCTCTC 59.112 44.000 5.01 0.00 0.00 3.20
936 2674 5.888161 GGAAGTTCAATCTCTCTCTCTCTCT 59.112 44.000 5.01 0.00 0.00 3.10
937 2675 6.038714 GGAAGTTCAATCTCTCTCTCTCTCTC 59.961 46.154 5.01 0.00 0.00 3.20
938 2676 6.319048 AGTTCAATCTCTCTCTCTCTCTCT 57.681 41.667 0.00 0.00 0.00 3.10
939 2677 6.352516 AGTTCAATCTCTCTCTCTCTCTCTC 58.647 44.000 0.00 0.00 0.00 3.20
940 2678 6.157645 AGTTCAATCTCTCTCTCTCTCTCTCT 59.842 42.308 0.00 0.00 0.00 3.10
941 2679 6.166984 TCAATCTCTCTCTCTCTCTCTCTC 57.833 45.833 0.00 0.00 0.00 3.20
942 2680 5.901853 TCAATCTCTCTCTCTCTCTCTCTCT 59.098 44.000 0.00 0.00 0.00 3.10
943 2681 6.041409 TCAATCTCTCTCTCTCTCTCTCTCTC 59.959 46.154 0.00 0.00 0.00 3.20
944 2682 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
945 2683 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
946 2684 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
947 2685 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
948 2686 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
949 2687 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
960 2698 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
974 2946 3.041211 CTCTCTCCCTCTCTCTCTCTGA 58.959 54.545 0.00 0.00 0.00 3.27
989 2961 1.232792 CTGAGGAGGAGGAGGAGGG 59.767 68.421 0.00 0.00 0.00 4.30
990 2962 2.310930 CTGAGGAGGAGGAGGAGGGG 62.311 70.000 0.00 0.00 0.00 4.79
996 2971 1.839296 GGAGGAGGAGGGGGAATCG 60.839 68.421 0.00 0.00 0.00 3.34
1023 2998 1.133823 AGGGTTGTGAGCATGTTGACA 60.134 47.619 0.00 0.00 0.00 3.58
1152 3127 0.249120 TCTACATGGGCCTCGTTGTG 59.751 55.000 4.53 0.00 0.00 3.33
1213 3194 2.029964 GGAACAAGGGCGACGACA 59.970 61.111 1.63 0.00 0.00 4.35
1309 3305 6.038492 GGTCAGTACTAGTCTATTCTCCACAC 59.962 46.154 0.00 0.00 0.00 3.82
1411 3418 6.037940 GCACGCATATGATAAGATGATCCATT 59.962 38.462 6.97 0.00 0.00 3.16
1585 4598 1.760405 AAAGTGGAGGAAGGTGGGAT 58.240 50.000 0.00 0.00 0.00 3.85
1674 4690 2.027192 GGATGTGGCAGTACTCCTTTCA 60.027 50.000 11.21 8.72 0.00 2.69
1677 4693 4.098914 TGTGGCAGTACTCCTTTCAATT 57.901 40.909 11.21 0.00 0.00 2.32
1796 4891 0.868406 GTGACGCTTTGACTTGGGAG 59.132 55.000 0.00 0.00 0.00 4.30
2073 5168 5.346281 CCTGAAGAAGCAGTACGTAAAAGAG 59.654 44.000 0.00 0.00 34.06 2.85
2256 5351 1.689813 TCGCTGGACTACCACTTTTCA 59.310 47.619 0.00 0.00 41.77 2.69
2310 5405 0.884704 TCTTCAGCTTCAACGGCACC 60.885 55.000 0.00 0.00 0.00 5.01
2481 5576 1.374252 CAGCTTCAAGGCGTACCGT 60.374 57.895 0.00 0.00 42.76 4.83
2661 5756 1.226888 GTACTGCGTCGTCATCCCC 60.227 63.158 0.00 0.00 0.00 4.81
2889 5984 1.289380 GGTCGTCACCGAGAAGCTT 59.711 57.895 0.00 0.00 45.26 3.74
3016 6123 0.534412 GCTCTTCCTGCTCTACTGCA 59.466 55.000 0.00 0.00 41.05 4.41
3056 6163 1.644786 GGCCACGACCACTTGTATGC 61.645 60.000 0.00 0.00 0.00 3.14
3072 6179 0.471617 ATGCCTACCTCCTCATGCAC 59.528 55.000 0.00 0.00 0.00 4.57
3123 6230 0.953960 ACGTCGGCTCCCAATGAAAC 60.954 55.000 0.00 0.00 0.00 2.78
3127 6234 1.883021 GGCTCCCAATGAAACCACG 59.117 57.895 0.00 0.00 0.00 4.94
3133 6240 1.134175 CCCAATGAAACCACGCATACC 59.866 52.381 0.00 0.00 0.00 2.73
3134 6241 2.091541 CCAATGAAACCACGCATACCT 58.908 47.619 0.00 0.00 0.00 3.08
3135 6242 3.275143 CCAATGAAACCACGCATACCTA 58.725 45.455 0.00 0.00 0.00 3.08
3136 6243 3.064820 CCAATGAAACCACGCATACCTAC 59.935 47.826 0.00 0.00 0.00 3.18
3137 6244 1.999048 TGAAACCACGCATACCTACG 58.001 50.000 0.00 0.00 0.00 3.51
3138 6245 1.273048 TGAAACCACGCATACCTACGT 59.727 47.619 0.00 0.00 44.75 3.57
3139 6246 1.922545 GAAACCACGCATACCTACGTC 59.077 52.381 0.00 0.00 41.32 4.34
3140 6247 0.179156 AACCACGCATACCTACGTCG 60.179 55.000 0.00 0.00 41.32 5.12
3141 6248 1.298863 CCACGCATACCTACGTCGG 60.299 63.158 4.24 4.24 41.32 4.79
3167 6274 3.181536 CGTCATCGCTTCTTGTTTCTCAG 60.182 47.826 0.00 0.00 0.00 3.35
3168 6275 2.738846 TCATCGCTTCTTGTTTCTCAGC 59.261 45.455 0.00 0.00 0.00 4.26
3174 6281 3.005155 GCTTCTTGTTTCTCAGCACCAAT 59.995 43.478 0.00 0.00 0.00 3.16
3191 6298 2.318578 CAATACACACGTACGTTCCGT 58.681 47.619 20.23 17.48 44.35 4.69
3220 6327 5.457799 ACGTACGTCGATTGGAATTAATCAG 59.542 40.000 16.72 0.00 42.86 2.90
3271 6378 6.419710 TCACTACTGGAATTTTCGTATATGCG 59.580 38.462 6.90 6.90 0.00 4.73
3510 6625 3.173668 AGTCACGACTGCAACACTTTA 57.826 42.857 0.00 0.00 40.75 1.85
3577 6692 5.106555 CCGACAAGCAGAAAGACATGTTTAT 60.107 40.000 0.00 0.00 0.00 1.40
3628 6743 8.147642 AGCTTCGGTCTTCATTATTAAGAATG 57.852 34.615 15.22 15.22 38.03 2.67
3737 7054 2.595238 ACAGTACCTGTTTCCGAGAGT 58.405 47.619 0.00 0.00 42.59 3.24
3739 7056 3.243771 ACAGTACCTGTTTCCGAGAGTTG 60.244 47.826 0.00 0.00 42.59 3.16
3755 7072 3.515901 AGAGTTGCTCTCGGTAAAGGAAT 59.484 43.478 0.00 0.00 46.86 3.01
3756 7073 3.600388 AGTTGCTCTCGGTAAAGGAATG 58.400 45.455 0.00 0.00 0.00 2.67
3769 7086 0.693049 AGGAATGGTTGCCGAGAGTT 59.307 50.000 0.00 0.00 0.00 3.01
3809 7126 4.536489 AGGCTACCATCAAACTTTAGTCCT 59.464 41.667 0.00 0.00 0.00 3.85
3820 7137 3.973425 ACTTTAGTCCTACCTCGCCTAA 58.027 45.455 0.00 0.00 0.00 2.69
3831 7148 2.151202 CCTCGCCTAAAGACAAGCAAA 58.849 47.619 0.00 0.00 0.00 3.68
3836 7153 6.404734 CCTCGCCTAAAGACAAGCAAAATAAT 60.405 38.462 0.00 0.00 0.00 1.28
3865 7182 9.930693 GTTTAAATAGTGGGATAGTCTAGATGG 57.069 37.037 0.00 0.00 0.00 3.51
3875 7192 6.495526 GGGATAGTCTAGATGGAGTAAGCTTT 59.504 42.308 3.20 0.00 0.00 3.51
3916 7233 9.132923 TCGTATTAAGGAGATGAACTATCACTT 57.867 33.333 0.00 0.00 38.69 3.16
3961 7278 6.257630 GGCAGAGAAGATTCAAAGTGATAGAC 59.742 42.308 0.00 0.00 0.00 2.59
3987 7304 7.659390 CCATCTTCTTAATGGTTCATACCTCTC 59.341 40.741 0.00 0.00 45.27 3.20
3988 7305 7.125792 TCTTCTTAATGGTTCATACCTCTCC 57.874 40.000 0.00 0.00 45.27 3.71
4001 7318 8.958506 GTTCATACCTCTCCAACGTATCTATAT 58.041 37.037 0.00 0.00 0.00 0.86
4118 7435 1.172180 TAGTGCCAAGTGCCAGTTGC 61.172 55.000 6.75 3.64 40.16 4.17
4119 7436 2.123769 TGCCAAGTGCCAGTTGCT 60.124 55.556 6.75 0.00 42.00 3.91
4120 7437 2.337532 GCCAAGTGCCAGTTGCTG 59.662 61.111 6.75 0.00 42.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.901123 TGGGTGTGTCGGTGCACG 62.901 66.667 11.45 6.55 41.94 5.34
130 132 7.790823 CATCCAAAAATGGAAAACTTTCAGT 57.209 32.000 1.05 0.00 41.90 3.41
217 329 2.344025 CCTCACAAGCGGTACTTAACC 58.656 52.381 0.00 0.00 45.77 2.85
257 369 1.876156 CAAGACTTCAGTCAAGTGGCC 59.124 52.381 9.62 0.00 46.10 5.36
317 429 3.290948 AAACCGCTTGGAGGCATATTA 57.709 42.857 0.00 0.00 36.26 0.98
371 510 4.870426 CCTTGCGTGTTACAGAGTGAATAT 59.130 41.667 0.00 0.00 0.00 1.28
372 511 4.021807 TCCTTGCGTGTTACAGAGTGAATA 60.022 41.667 0.00 0.00 0.00 1.75
373 512 3.067106 CCTTGCGTGTTACAGAGTGAAT 58.933 45.455 0.00 0.00 0.00 2.57
421 560 1.399215 CCATAAAACCACGTGCGTGTC 60.399 52.381 20.92 0.00 44.02 3.67
493 675 5.874810 ACATATCTTAGTGTGTGCGTTCATT 59.125 36.000 0.00 0.00 0.00 2.57
495 677 4.816392 ACATATCTTAGTGTGTGCGTTCA 58.184 39.130 0.00 0.00 0.00 3.18
496 678 6.034591 AGTACATATCTTAGTGTGTGCGTTC 58.965 40.000 0.00 0.00 33.32 3.95
497 679 5.962433 AGTACATATCTTAGTGTGTGCGTT 58.038 37.500 0.00 0.00 33.32 4.84
500 685 5.069251 AGGGAGTACATATCTTAGTGTGTGC 59.931 44.000 0.00 0.00 0.00 4.57
532 717 4.488879 ACTAAACCCACGACGAGTAAATC 58.511 43.478 0.00 0.00 0.00 2.17
534 719 4.320608 AACTAAACCCACGACGAGTAAA 57.679 40.909 0.00 0.00 0.00 2.01
535 720 4.320608 AAACTAAACCCACGACGAGTAA 57.679 40.909 0.00 0.00 0.00 2.24
536 721 5.446143 TTAAACTAAACCCACGACGAGTA 57.554 39.130 0.00 0.00 0.00 2.59
538 723 5.851047 AATTAAACTAAACCCACGACGAG 57.149 39.130 0.00 0.00 0.00 4.18
539 724 7.721286 TTAAATTAAACTAAACCCACGACGA 57.279 32.000 0.00 0.00 0.00 4.20
540 725 8.203017 GTTTAAATTAAACTAAACCCACGACG 57.797 34.615 18.36 0.00 43.50 5.12
553 738 8.067189 TCGTCGTGGGTTTAGTTTAAATTAAAC 58.933 33.333 26.25 26.25 46.36 2.01
554 739 8.147642 TCGTCGTGGGTTTAGTTTAAATTAAA 57.852 30.769 10.79 10.79 0.00 1.52
555 740 7.440856 ACTCGTCGTGGGTTTAGTTTAAATTAA 59.559 33.333 0.00 0.00 0.00 1.40
556 741 6.928492 ACTCGTCGTGGGTTTAGTTTAAATTA 59.072 34.615 0.00 0.00 0.00 1.40
557 742 5.759763 ACTCGTCGTGGGTTTAGTTTAAATT 59.240 36.000 0.00 0.00 0.00 1.82
558 743 5.299949 ACTCGTCGTGGGTTTAGTTTAAAT 58.700 37.500 0.00 0.00 0.00 1.40
559 744 4.692228 ACTCGTCGTGGGTTTAGTTTAAA 58.308 39.130 0.00 0.00 0.00 1.52
560 745 4.320608 ACTCGTCGTGGGTTTAGTTTAA 57.679 40.909 0.00 0.00 0.00 1.52
561 746 5.446143 TTACTCGTCGTGGGTTTAGTTTA 57.554 39.130 0.00 0.00 0.00 2.01
562 747 2.896745 ACTCGTCGTGGGTTTAGTTT 57.103 45.000 0.00 0.00 0.00 2.66
563 748 4.320608 TTTACTCGTCGTGGGTTTAGTT 57.679 40.909 0.00 0.00 0.00 2.24
564 749 4.488879 GATTTACTCGTCGTGGGTTTAGT 58.511 43.478 0.00 0.00 0.00 2.24
565 750 3.545078 CGATTTACTCGTCGTGGGTTTAG 59.455 47.826 0.00 0.00 42.56 1.85
566 751 3.500982 CGATTTACTCGTCGTGGGTTTA 58.499 45.455 0.00 0.00 42.56 2.01
568 753 1.403249 CCGATTTACTCGTCGTGGGTT 60.403 52.381 0.00 0.00 46.18 4.11
569 754 0.171903 CCGATTTACTCGTCGTGGGT 59.828 55.000 0.00 0.00 46.18 4.51
570 755 0.452987 TCCGATTTACTCGTCGTGGG 59.547 55.000 0.00 0.00 46.18 4.61
571 756 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
572 757 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
573 758 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
574 759 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
575 760 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
578 763 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
579 764 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
580 765 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
581 766 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
582 767 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
583 768 1.341778 ACTACTCCCTCCGTTCCGATT 60.342 52.381 0.00 0.00 0.00 3.34
584 769 0.258194 ACTACTCCCTCCGTTCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
586 771 1.020437 GTACTACTCCCTCCGTTCCG 58.980 60.000 0.00 0.00 0.00 4.30
587 772 1.020437 CGTACTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
588 773 1.743996 ACGTACTACTCCCTCCGTTC 58.256 55.000 0.00 0.00 0.00 3.95
589 774 3.350219 TTACGTACTACTCCCTCCGTT 57.650 47.619 0.00 0.00 0.00 4.44
590 775 3.567478 ATTACGTACTACTCCCTCCGT 57.433 47.619 0.00 0.00 0.00 4.69
591 776 4.096984 ACAAATTACGTACTACTCCCTCCG 59.903 45.833 0.00 0.00 0.00 4.63
593 778 7.192232 CAGTACAAATTACGTACTACTCCCTC 58.808 42.308 16.26 0.00 46.03 4.30
702 1335 6.500684 CATTAGTGCTGGCTAGAAAGAAAA 57.499 37.500 0.00 0.00 0.00 2.29
717 1350 5.946972 TCTAGGATACCTCTAGCATTAGTGC 59.053 44.000 1.21 1.21 42.52 4.40
900 2638 1.273324 TGAACTTCCTCCTCCTCCTCC 60.273 57.143 0.00 0.00 0.00 4.30
901 2639 2.239681 TGAACTTCCTCCTCCTCCTC 57.760 55.000 0.00 0.00 0.00 3.71
902 2640 2.723530 TTGAACTTCCTCCTCCTCCT 57.276 50.000 0.00 0.00 0.00 3.69
912 2650 5.888161 AGAGAGAGAGAGAGATTGAACTTCC 59.112 44.000 0.00 0.00 0.00 3.46
933 2671 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
934 2672 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
935 2673 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
936 2674 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
937 2675 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
938 2676 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
939 2677 3.323403 GGGAGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
940 2678 3.051803 AGGGAGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
941 2679 3.312890 AGGGAGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
942 2680 3.051803 AGAGGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
943 2681 3.312890 AGAGGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
944 2682 3.051803 AGAGAGGGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
945 2683 3.312890 AGAGAGGGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
946 2684 3.051803 AGAGAGAGGGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
947 2685 3.312890 AGAGAGAGGGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
948 2686 3.051803 AGAGAGAGAGGGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
949 2687 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
974 2946 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
989 2961 1.132500 AACCCTCATCCTCGATTCCC 58.868 55.000 0.00 0.00 0.00 3.97
990 2962 1.486726 ACAACCCTCATCCTCGATTCC 59.513 52.381 0.00 0.00 0.00 3.01
996 2971 0.615331 TGCTCACAACCCTCATCCTC 59.385 55.000 0.00 0.00 0.00 3.71
1152 3127 2.029844 GTTGAGCCAGAGCACGGTC 61.030 63.158 0.00 0.00 43.56 4.79
1178 3153 1.691434 TCCTTTGGTTACGGTTACGGT 59.309 47.619 0.55 0.55 46.48 4.83
1213 3194 2.736719 CGTCATCGCTCTCCAGATTGTT 60.737 50.000 0.00 0.00 0.00 2.83
1309 3305 9.107177 GAGCAATTAATCCATCATACATAGAGG 57.893 37.037 0.00 0.00 0.00 3.69
1443 3461 4.330944 ACGAGTGGTTGTTTCATCAGTA 57.669 40.909 0.00 0.00 0.00 2.74
1558 4054 6.321435 CCCACCTTCCTCCACTTTTATATTTC 59.679 42.308 0.00 0.00 0.00 2.17
1576 4072 6.496911 ACAAATAAACTTAGCAATCCCACCTT 59.503 34.615 0.00 0.00 0.00 3.50
1585 4598 9.660180 AAGGAAACAAACAAATAAACTTAGCAA 57.340 25.926 0.00 0.00 0.00 3.91
1609 4622 5.005779 GCATTTAGATCTACACACCGACAAG 59.994 44.000 0.67 0.00 0.00 3.16
1614 4627 4.938080 AGAGCATTTAGATCTACACACCG 58.062 43.478 0.67 0.00 42.21 4.94
1687 4703 4.870426 ACTTGACACAAATCTAGTATGCGG 59.130 41.667 0.00 0.00 33.65 5.69
1689 4705 6.968131 TGACTTGACACAAATCTAGTATGC 57.032 37.500 0.00 0.00 35.25 3.14
1763 4858 7.432838 GTCAAAGCGTCACCAAACTTATAAAAA 59.567 33.333 0.00 0.00 0.00 1.94
1796 4891 4.143473 CGCATGCTTGTTTCATCAGTTTTC 60.143 41.667 17.13 0.00 0.00 2.29
1974 5069 3.590466 GATGTGCACCCCCTTGCCT 62.590 63.158 15.69 0.00 42.25 4.75
2052 5147 5.388578 GCACTCTTTTACGTACTGCTTCTTC 60.389 44.000 0.00 0.00 0.00 2.87
2256 5351 2.681778 CCGACCTCCTGCTCCACT 60.682 66.667 0.00 0.00 0.00 4.00
2514 5609 1.538047 ACATCTTGCGCATGAGGTTT 58.462 45.000 30.35 14.67 0.00 3.27
3016 6123 2.678836 CGAAGACCATGTCGTAGAGAGT 59.321 50.000 0.00 0.00 36.95 3.24
3056 6163 0.755686 GGAGTGCATGAGGAGGTAGG 59.244 60.000 0.00 0.00 0.00 3.18
3127 6234 0.385223 CGTAGCCGACGTAGGTATGC 60.385 60.000 16.51 8.10 46.86 3.14
3137 6244 1.201098 GAAGCGATGACGTAGCCGAC 61.201 60.000 7.06 0.08 41.98 4.79
3138 6245 1.063649 GAAGCGATGACGTAGCCGA 59.936 57.895 7.06 0.00 41.98 5.54
3139 6246 0.525668 AAGAAGCGATGACGTAGCCG 60.526 55.000 0.00 0.00 41.98 5.52
3140 6247 0.924090 CAAGAAGCGATGACGTAGCC 59.076 55.000 0.00 0.00 41.98 3.93
3141 6248 1.630148 ACAAGAAGCGATGACGTAGC 58.370 50.000 0.00 0.00 41.98 3.58
3167 6274 1.421382 ACGTACGTGTGTATTGGTGC 58.579 50.000 22.14 0.00 32.11 5.01
3168 6275 2.409378 GGAACGTACGTGTGTATTGGTG 59.591 50.000 23.57 0.00 32.11 4.17
3194 6301 6.414694 TGATTAATTCCAATCGACGTACGTAC 59.585 38.462 22.87 15.90 43.13 3.67
3207 6314 8.201464 TGAGCGTTATACTCTGATTAATTCCAA 58.799 33.333 0.00 0.00 35.12 3.53
3220 6327 7.333423 AGAGAGAGATACATGAGCGTTATACTC 59.667 40.741 0.00 0.00 34.62 2.59
3271 6378 3.264104 TCGACGAAAATTATGACACCCC 58.736 45.455 0.00 0.00 0.00 4.95
3323 6430 3.704381 GAGTCACGCTCGACATCTT 57.296 52.632 5.33 0.00 38.43 2.40
3346 6453 8.691797 GGCATTATCATTTGTTTACTCCCTTTA 58.308 33.333 0.00 0.00 0.00 1.85
3446 6561 3.731295 CCACGTGGCAAAACTTTGT 57.269 47.368 24.02 0.00 40.24 2.83
3490 6605 2.024176 AAAGTGTTGCAGTCGTGACT 57.976 45.000 0.00 0.00 43.61 3.41
3577 6692 9.990360 TTAATGCGATTGGACTATTGAACTATA 57.010 29.630 0.00 0.00 0.00 1.31
3628 6743 8.781196 ACATGAAGATTCATAGTGACAATATGC 58.219 33.333 16.26 4.84 45.62 3.14
3737 7054 2.304761 ACCATTCCTTTACCGAGAGCAA 59.695 45.455 0.00 0.00 0.00 3.91
3739 7056 2.678336 CAACCATTCCTTTACCGAGAGC 59.322 50.000 0.00 0.00 0.00 4.09
3755 7072 1.301716 GAGCAACTCTCGGCAACCA 60.302 57.895 0.00 0.00 31.20 3.67
3756 7073 1.004440 AGAGCAACTCTCGGCAACC 60.004 57.895 0.00 0.00 46.44 3.77
3769 7086 3.031736 AGCCTTATCTTTACCGAGAGCA 58.968 45.455 0.00 0.00 0.00 4.26
3809 7126 1.897133 TGCTTGTCTTTAGGCGAGGTA 59.103 47.619 1.05 0.00 0.00 3.08
3836 7153 9.931698 TCTAGACTATCCCACTATTTAAACAGA 57.068 33.333 0.00 0.00 0.00 3.41
3859 7176 7.432148 TGAATACCAAAGCTTACTCCATCTA 57.568 36.000 0.00 0.00 0.00 1.98
3865 7182 8.494016 AGTGTAATGAATACCAAAGCTTACTC 57.506 34.615 0.00 0.00 33.27 2.59
3875 7192 8.916062 TCCTTAATACGAGTGTAATGAATACCA 58.084 33.333 0.00 0.00 33.44 3.25
3916 7233 4.460731 TGCCCGAAACATGTGAATATTCAA 59.539 37.500 19.55 10.55 39.21 2.69
3922 7239 2.086869 CTCTGCCCGAAACATGTGAAT 58.913 47.619 0.00 0.00 0.00 2.57
3928 7245 3.274288 GAATCTTCTCTGCCCGAAACAT 58.726 45.455 0.00 0.00 0.00 2.71
4087 7404 4.943705 CACTTGGCACTATGTCAATAGGTT 59.056 41.667 0.00 0.00 41.56 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.