Multiple sequence alignment - TraesCS7D01G544600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G544600 chr7D 100.000 6042 0 0 1 6042 632140216 632146257 0.000000e+00 11158.0
1 TraesCS7D01G544600 chr7D 86.195 3180 371 40 2707 5876 632080998 632084119 0.000000e+00 3378.0
2 TraesCS7D01G544600 chr7D 90.485 2270 206 6 2883 5149 632098428 632100690 0.000000e+00 2987.0
3 TraesCS7D01G544600 chr7D 86.227 1198 146 13 988 2174 632079663 632080852 0.000000e+00 1280.0
4 TraesCS7D01G544600 chr7D 82.429 1161 181 13 933 2080 632018319 632019469 0.000000e+00 992.0
5 TraesCS7D01G544600 chr7D 88.608 79 8 1 361 439 621259902 621259979 1.790000e-15 95.3
6 TraesCS7D01G544600 chr7A 94.672 3341 168 7 2707 6042 735844407 735841072 0.000000e+00 5175.0
7 TraesCS7D01G544600 chr7A 90.364 2387 218 10 2775 5158 736006632 736004255 0.000000e+00 3123.0
8 TraesCS7D01G544600 chr7A 90.856 2220 188 14 2858 5072 735962494 735964703 0.000000e+00 2961.0
9 TraesCS7D01G544600 chr7A 85.610 2335 274 40 3586 5884 736071459 736069151 0.000000e+00 2394.0
10 TraesCS7D01G544600 chr7A 86.090 1977 165 48 507 2436 735960098 735962011 0.000000e+00 2026.0
11 TraesCS7D01G544600 chr7A 89.519 1288 111 14 909 2177 735786046 735784764 0.000000e+00 1609.0
12 TraesCS7D01G544600 chr7A 95.372 886 40 1 5158 6042 736091868 736090983 0.000000e+00 1408.0
13 TraesCS7D01G544600 chr7A 94.695 886 46 1 5158 6042 736324777 736323892 0.000000e+00 1375.0
14 TraesCS7D01G544600 chr7A 86.156 1228 156 7 952 2174 735902364 735903582 0.000000e+00 1314.0
15 TraesCS7D01G544600 chr7A 82.143 1232 205 10 909 2130 736329574 736328348 0.000000e+00 1042.0
16 TraesCS7D01G544600 chr7A 78.425 876 154 25 5170 6020 736089077 736088212 6.890000e-149 538.0
17 TraesCS7D01G544600 chr7A 78.970 466 67 20 2175 2617 736002172 736001715 7.660000e-74 289.0
18 TraesCS7D01G544600 chr7A 88.947 190 19 2 4969 5158 735782503 735782316 3.640000e-57 233.0
19 TraesCS7D01G544600 chr7A 81.979 283 22 9 344 621 193933009 193933267 4.740000e-51 213.0
20 TraesCS7D01G544600 chr7A 77.713 341 31 28 264 569 736098230 736097900 3.750000e-37 167.0
21 TraesCS7D01G544600 chr7A 97.872 94 2 0 70 163 736097522 736097429 4.850000e-36 163.0
22 TraesCS7D01G544600 chr7A 90.411 73 6 1 504 575 735786567 735786495 1.790000e-15 95.3
23 TraesCS7D01G544600 chr7A 91.837 49 3 1 2494 2541 735961898 735961946 3.910000e-07 67.6
24 TraesCS7D01G544600 chr7B 93.040 3161 218 2 2883 6042 743652557 743655716 0.000000e+00 4617.0
25 TraesCS7D01G544600 chr7B 90.216 2453 220 16 2707 5151 744249666 744252106 0.000000e+00 3182.0
26 TraesCS7D01G544600 chr7B 90.341 2319 215 8 2840 5158 745232105 745234414 0.000000e+00 3033.0
27 TraesCS7D01G544600 chr7B 90.739 2138 192 6 2874 5008 744293271 744291137 0.000000e+00 2846.0
28 TraesCS7D01G544600 chr7B 86.145 2187 204 57 302 2442 743649915 743652048 0.000000e+00 2268.0
29 TraesCS7D01G544600 chr7B 85.597 2194 203 51 302 2440 745229501 745231636 0.000000e+00 2196.0
30 TraesCS7D01G544600 chr7B 91.527 1310 96 9 4487 5785 743714584 743715889 0.000000e+00 1790.0
31 TraesCS7D01G544600 chr7B 85.922 1648 166 29 909 2529 745202053 745200445 0.000000e+00 1698.0
32 TraesCS7D01G544600 chr7B 81.970 1858 255 42 4209 6021 743995425 743993603 0.000000e+00 1502.0
33 TraesCS7D01G544600 chr7B 83.447 1468 200 20 999 2442 744295080 744293632 0.000000e+00 1325.0
34 TraesCS7D01G544600 chr7B 93.169 893 60 1 5149 6041 744155570 744156461 0.000000e+00 1310.0
35 TraesCS7D01G544600 chr7B 86.145 1061 143 4 999 2057 744207133 744208191 0.000000e+00 1142.0
36 TraesCS7D01G544600 chr7B 82.893 1210 172 21 990 2174 744239551 744240750 0.000000e+00 1055.0
37 TraesCS7D01G544600 chr7B 81.616 718 118 8 5164 5877 744021912 744021205 3.140000e-162 582.0
38 TraesCS7D01G544600 chr7B 79.138 858 156 15 5182 6020 743657677 743658530 6.790000e-159 571.0
39 TraesCS7D01G544600 chr7B 87.050 417 16 12 5 412 744013508 744013121 2.590000e-118 436.0
40 TraesCS7D01G544600 chr7B 85.969 392 30 13 302 684 745202628 745202253 4.390000e-106 396.0
41 TraesCS7D01G544600 chr7B 86.029 272 33 3 2175 2442 744177864 744178134 2.760000e-73 287.0
42 TraesCS7D01G544600 chr7B 89.189 185 16 3 789 970 744013669 744013486 1.690000e-55 228.0
43 TraesCS7D01G544600 chr7B 85.075 201 24 3 2177 2374 743998030 743997833 3.690000e-47 200.0
44 TraesCS7D01G544600 chr7B 83.482 224 27 8 2225 2442 744240833 744241052 3.690000e-47 200.0
45 TraesCS7D01G544600 chr7B 85.124 121 15 2 2173 2290 744004501 744004381 2.960000e-23 121.0
46 TraesCS7D01G544600 chr7B 92.593 54 3 1 2494 2546 743997884 743997831 6.490000e-10 76.8
47 TraesCS7D01G544600 chr7B 97.297 37 1 0 2502 2538 744178022 744178058 5.060000e-06 63.9
48 TraesCS7D01G544600 chr7B 97.143 35 1 0 2213 2247 744144328 744144362 6.540000e-05 60.2
49 TraesCS7D01G544600 chr1B 81.063 734 129 9 5155 5884 577923433 577922706 1.460000e-160 577.0
50 TraesCS7D01G544600 chr1B 93.333 90 4 2 344 431 27642472 27642561 1.370000e-26 132.0
51 TraesCS7D01G544600 chr1A 82.332 283 21 9 344 621 582060493 582060235 1.020000e-52 219.0
52 TraesCS7D01G544600 chr3A 92.308 130 8 2 344 471 642605842 642605971 3.720000e-42 183.0
53 TraesCS7D01G544600 chr5A 80.212 283 21 14 344 621 574016272 574016020 4.810000e-41 180.0
54 TraesCS7D01G544600 chr6B 93.333 90 4 2 344 431 177082533 177082444 1.370000e-26 132.0
55 TraesCS7D01G544600 chr4B 91.011 89 7 1 344 431 569526607 569526695 1.060000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G544600 chr7D 632140216 632146257 6041 False 11158.000000 11158 100.000000 1 6042 1 chr7D.!!$F4 6041
1 TraesCS7D01G544600 chr7D 632098428 632100690 2262 False 2987.000000 2987 90.485000 2883 5149 1 chr7D.!!$F3 2266
2 TraesCS7D01G544600 chr7D 632079663 632084119 4456 False 2329.000000 3378 86.211000 988 5876 2 chr7D.!!$F5 4888
3 TraesCS7D01G544600 chr7D 632018319 632019469 1150 False 992.000000 992 82.429000 933 2080 1 chr7D.!!$F2 1147
4 TraesCS7D01G544600 chr7A 735841072 735844407 3335 True 5175.000000 5175 94.672000 2707 6042 1 chr7A.!!$R1 3335
5 TraesCS7D01G544600 chr7A 736069151 736071459 2308 True 2394.000000 2394 85.610000 3586 5884 1 chr7A.!!$R2 2298
6 TraesCS7D01G544600 chr7A 736001715 736006632 4917 True 1706.000000 3123 84.667000 2175 5158 2 chr7A.!!$R4 2983
7 TraesCS7D01G544600 chr7A 735960098 735964703 4605 False 1684.866667 2961 89.594333 507 5072 3 chr7A.!!$F3 4565
8 TraesCS7D01G544600 chr7A 735902364 735903582 1218 False 1314.000000 1314 86.156000 952 2174 1 chr7A.!!$F2 1222
9 TraesCS7D01G544600 chr7A 736323892 736329574 5682 True 1208.500000 1375 88.419000 909 6042 2 chr7A.!!$R7 5133
10 TraesCS7D01G544600 chr7A 736088212 736091868 3656 True 973.000000 1408 86.898500 5158 6042 2 chr7A.!!$R5 884
11 TraesCS7D01G544600 chr7A 735782316 735786567 4251 True 645.766667 1609 89.625667 504 5158 3 chr7A.!!$R3 4654
12 TraesCS7D01G544600 chr7B 744249666 744252106 2440 False 3182.000000 3182 90.216000 2707 5151 1 chr7B.!!$F5 2444
13 TraesCS7D01G544600 chr7B 745229501 745234414 4913 False 2614.500000 3033 87.969000 302 5158 2 chr7B.!!$F9 4856
14 TraesCS7D01G544600 chr7B 743649915 743658530 8615 False 2485.333333 4617 86.107667 302 6042 3 chr7B.!!$F6 5740
15 TraesCS7D01G544600 chr7B 744291137 744295080 3943 True 2085.500000 2846 87.093000 999 5008 2 chr7B.!!$R5 4009
16 TraesCS7D01G544600 chr7B 743714584 743715889 1305 False 1790.000000 1790 91.527000 4487 5785 1 chr7B.!!$F1 1298
17 TraesCS7D01G544600 chr7B 744155570 744156461 891 False 1310.000000 1310 93.169000 5149 6041 1 chr7B.!!$F3 892
18 TraesCS7D01G544600 chr7B 744207133 744208191 1058 False 1142.000000 1142 86.145000 999 2057 1 chr7B.!!$F4 1058
19 TraesCS7D01G544600 chr7B 745200445 745202628 2183 True 1047.000000 1698 85.945500 302 2529 2 chr7B.!!$R6 2227
20 TraesCS7D01G544600 chr7B 744239551 744241052 1501 False 627.500000 1055 83.187500 990 2442 2 chr7B.!!$F8 1452
21 TraesCS7D01G544600 chr7B 743993603 743998030 4427 True 592.933333 1502 86.546000 2177 6021 3 chr7B.!!$R3 3844
22 TraesCS7D01G544600 chr7B 744021205 744021912 707 True 582.000000 582 81.616000 5164 5877 1 chr7B.!!$R2 713
23 TraesCS7D01G544600 chr7B 744013121 744013669 548 True 332.000000 436 88.119500 5 970 2 chr7B.!!$R4 965
24 TraesCS7D01G544600 chr1B 577922706 577923433 727 True 577.000000 577 81.063000 5155 5884 1 chr1B.!!$R1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.108424 ACTTGCTCTCTCGCCACATC 60.108 55.000 0.00 0.00 0.00 3.06 F
133 134 0.108472 TTGCTCTCTCGCCACATCTG 60.108 55.000 0.00 0.00 0.00 2.90 F
280 281 0.109342 CAAAGCCTCAGGGTCAGTGT 59.891 55.000 0.00 0.00 30.76 3.55 F
525 532 0.319728 TTGAGCTGCTCTGTCTCCAC 59.680 55.000 28.04 1.81 0.00 4.02 F
1323 1554 1.226323 CTTGCTCTTCTGCATGCGC 60.226 57.895 14.09 9.64 42.96 6.09 F
2262 2712 1.979469 GACACGTTCAGAGACACGATG 59.021 52.381 0.08 0.00 39.76 3.84 F
2472 2993 2.890945 GTGAACCCCTGCAAATACAACT 59.109 45.455 0.00 0.00 0.00 3.16 F
4243 5933 0.534203 TGCCCCTCGACAACTTGAAC 60.534 55.000 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1323 1554 1.144298 TCATGAGCATGGGAGGGATTG 59.856 52.381 10.31 0.00 39.24 2.67 R
1785 2022 1.636340 CGCGTCCTTAGCATTTCCG 59.364 57.895 0.00 0.00 34.19 4.30 R
1794 2031 2.126228 CGGTGAAGCGCGTCCTTA 60.126 61.111 20.62 0.00 0.00 2.69 R
2449 2970 1.145945 TGTATTTGCAGGGGTTCACCA 59.854 47.619 0.00 0.00 42.91 4.17 R
2818 3854 0.250081 CCAAGATCCTCTAAGGCGCC 60.250 60.000 21.89 21.89 34.61 6.53 R
3507 4544 1.527034 TGTTCTCACTGATTGCTGCC 58.473 50.000 0.00 0.00 0.00 4.85 R
4410 6103 3.451894 CCACCATTCCGCCCAAGC 61.452 66.667 0.00 0.00 0.00 4.01 R
6020 7974 2.029200 TGATTGTGCACCGCAAATCATT 60.029 40.909 20.45 0.00 41.47 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.288809 GTGGAGCACTTGAATTTCACC 57.711 47.619 0.00 0.00 0.00 4.02
21 22 2.887152 GTGGAGCACTTGAATTTCACCT 59.113 45.455 0.00 0.00 0.00 4.00
22 23 3.057946 GTGGAGCACTTGAATTTCACCTC 60.058 47.826 0.00 3.41 0.00 3.85
23 24 3.149196 GGAGCACTTGAATTTCACCTCA 58.851 45.455 0.00 0.00 0.00 3.86
24 25 3.057946 GGAGCACTTGAATTTCACCTCAC 60.058 47.826 0.00 0.00 0.00 3.51
25 26 3.817647 GAGCACTTGAATTTCACCTCACT 59.182 43.478 0.00 0.00 0.00 3.41
26 27 4.210331 AGCACTTGAATTTCACCTCACTT 58.790 39.130 0.00 0.00 0.00 3.16
27 28 4.037208 AGCACTTGAATTTCACCTCACTTG 59.963 41.667 0.00 0.00 0.00 3.16
28 29 4.036734 GCACTTGAATTTCACCTCACTTGA 59.963 41.667 0.00 0.00 0.00 3.02
29 30 5.755813 CACTTGAATTTCACCTCACTTGAG 58.244 41.667 0.00 0.00 41.71 3.02
30 31 4.276926 ACTTGAATTTCACCTCACTTGAGC 59.723 41.667 0.00 0.00 40.75 4.26
31 32 3.149196 TGAATTTCACCTCACTTGAGCC 58.851 45.455 0.26 0.00 40.75 4.70
32 33 1.813513 ATTTCACCTCACTTGAGCCG 58.186 50.000 0.26 0.00 40.75 5.52
33 34 0.250295 TTTCACCTCACTTGAGCCGG 60.250 55.000 0.00 0.00 40.75 6.13
34 35 1.118965 TTCACCTCACTTGAGCCGGA 61.119 55.000 5.05 0.00 40.75 5.14
35 36 1.079543 CACCTCACTTGAGCCGGAG 60.080 63.158 5.05 0.00 40.75 4.63
51 52 2.046892 AGGCAACGCGCATCTTCT 60.047 55.556 5.73 0.00 45.17 2.85
52 53 2.103042 AGGCAACGCGCATCTTCTC 61.103 57.895 5.73 0.00 45.17 2.87
53 54 2.401195 GCAACGCGCATCTTCTCC 59.599 61.111 5.73 0.00 41.79 3.71
54 55 2.697425 CAACGCGCATCTTCTCCG 59.303 61.111 5.73 0.00 0.00 4.63
55 56 3.188786 AACGCGCATCTTCTCCGC 61.189 61.111 5.73 0.00 43.88 5.54
59 60 2.956964 CGCATCTTCTCCGCCGTC 60.957 66.667 0.00 0.00 0.00 4.79
60 61 2.956964 GCATCTTCTCCGCCGTCG 60.957 66.667 0.00 0.00 0.00 5.12
89 90 2.485122 GCTGCGTGCATTGGGTAC 59.515 61.111 0.00 0.00 42.31 3.34
90 91 3.051392 GCTGCGTGCATTGGGTACC 62.051 63.158 2.17 2.17 46.67 3.34
102 103 3.795905 GGTACCCCCACGTCTTCA 58.204 61.111 0.00 0.00 0.00 3.02
103 104 1.294459 GGTACCCCCACGTCTTCAC 59.706 63.158 0.00 0.00 0.00 3.18
104 105 1.294459 GTACCCCCACGTCTTCACC 59.706 63.158 0.00 0.00 0.00 4.02
105 106 1.152290 TACCCCCACGTCTTCACCA 60.152 57.895 0.00 0.00 0.00 4.17
106 107 0.545787 TACCCCCACGTCTTCACCAT 60.546 55.000 0.00 0.00 0.00 3.55
107 108 1.377202 CCCCCACGTCTTCACCATG 60.377 63.158 0.00 0.00 0.00 3.66
108 109 1.676968 CCCCACGTCTTCACCATGA 59.323 57.895 0.00 0.00 0.00 3.07
109 110 0.253044 CCCCACGTCTTCACCATGAT 59.747 55.000 0.00 0.00 0.00 2.45
110 111 1.340017 CCCCACGTCTTCACCATGATT 60.340 52.381 0.00 0.00 0.00 2.57
111 112 2.009774 CCCACGTCTTCACCATGATTC 58.990 52.381 0.00 0.00 0.00 2.52
112 113 2.615240 CCCACGTCTTCACCATGATTCA 60.615 50.000 0.00 0.00 0.00 2.57
113 114 2.416547 CCACGTCTTCACCATGATTCAC 59.583 50.000 0.00 0.00 0.00 3.18
114 115 3.329386 CACGTCTTCACCATGATTCACT 58.671 45.455 0.00 0.00 0.00 3.41
115 116 3.748048 CACGTCTTCACCATGATTCACTT 59.252 43.478 0.00 0.00 0.00 3.16
116 117 3.748048 ACGTCTTCACCATGATTCACTTG 59.252 43.478 0.00 0.00 0.00 3.16
117 118 3.425359 CGTCTTCACCATGATTCACTTGC 60.425 47.826 0.00 0.00 0.00 4.01
118 119 3.755378 GTCTTCACCATGATTCACTTGCT 59.245 43.478 0.00 0.00 0.00 3.91
119 120 4.005650 TCTTCACCATGATTCACTTGCTC 58.994 43.478 0.00 0.00 0.00 4.26
120 121 3.708403 TCACCATGATTCACTTGCTCT 57.292 42.857 0.00 0.00 0.00 4.09
121 122 3.603532 TCACCATGATTCACTTGCTCTC 58.396 45.455 0.00 0.00 0.00 3.20
122 123 3.262660 TCACCATGATTCACTTGCTCTCT 59.737 43.478 0.00 0.00 0.00 3.10
123 124 3.622163 CACCATGATTCACTTGCTCTCTC 59.378 47.826 0.00 0.00 0.00 3.20
124 125 2.864946 CCATGATTCACTTGCTCTCTCG 59.135 50.000 0.00 0.00 0.00 4.04
125 126 2.001812 TGATTCACTTGCTCTCTCGC 57.998 50.000 0.00 0.00 0.00 5.03
126 127 1.285578 GATTCACTTGCTCTCTCGCC 58.714 55.000 0.00 0.00 0.00 5.54
127 128 0.610174 ATTCACTTGCTCTCTCGCCA 59.390 50.000 0.00 0.00 0.00 5.69
128 129 0.319900 TTCACTTGCTCTCTCGCCAC 60.320 55.000 0.00 0.00 0.00 5.01
129 130 1.005748 CACTTGCTCTCTCGCCACA 60.006 57.895 0.00 0.00 0.00 4.17
130 131 0.390866 CACTTGCTCTCTCGCCACAT 60.391 55.000 0.00 0.00 0.00 3.21
131 132 0.108424 ACTTGCTCTCTCGCCACATC 60.108 55.000 0.00 0.00 0.00 3.06
132 133 0.175302 CTTGCTCTCTCGCCACATCT 59.825 55.000 0.00 0.00 0.00 2.90
133 134 0.108472 TTGCTCTCTCGCCACATCTG 60.108 55.000 0.00 0.00 0.00 2.90
134 135 0.967380 TGCTCTCTCGCCACATCTGA 60.967 55.000 0.00 0.00 0.00 3.27
135 136 0.174389 GCTCTCTCGCCACATCTGAA 59.826 55.000 0.00 0.00 0.00 3.02
136 137 1.202510 GCTCTCTCGCCACATCTGAAT 60.203 52.381 0.00 0.00 0.00 2.57
137 138 2.471818 CTCTCTCGCCACATCTGAATG 58.528 52.381 0.00 0.00 38.93 2.67
138 139 2.100418 CTCTCTCGCCACATCTGAATGA 59.900 50.000 0.00 0.00 36.67 2.57
139 140 2.497273 TCTCTCGCCACATCTGAATGAA 59.503 45.455 0.00 0.00 36.67 2.57
140 141 2.606725 CTCTCGCCACATCTGAATGAAC 59.393 50.000 0.00 0.00 36.67 3.18
141 142 1.325640 CTCGCCACATCTGAATGAACG 59.674 52.381 0.00 0.00 36.67 3.95
142 143 1.078709 CGCCACATCTGAATGAACGT 58.921 50.000 0.00 0.00 36.67 3.99
143 144 1.061131 CGCCACATCTGAATGAACGTC 59.939 52.381 0.00 0.00 36.67 4.34
144 145 1.398390 GCCACATCTGAATGAACGTCC 59.602 52.381 0.00 0.00 36.67 4.79
145 146 2.698803 CCACATCTGAATGAACGTCCA 58.301 47.619 0.00 0.00 36.67 4.02
146 147 3.273434 CCACATCTGAATGAACGTCCAT 58.727 45.455 0.00 0.00 36.67 3.41
147 148 3.310774 CCACATCTGAATGAACGTCCATC 59.689 47.826 0.00 0.00 36.67 3.51
148 149 4.186926 CACATCTGAATGAACGTCCATCT 58.813 43.478 0.00 0.00 36.67 2.90
149 150 4.269603 CACATCTGAATGAACGTCCATCTC 59.730 45.833 0.00 0.00 36.67 2.75
150 151 4.081476 ACATCTGAATGAACGTCCATCTCA 60.081 41.667 0.00 0.00 36.67 3.27
151 152 4.535526 TCTGAATGAACGTCCATCTCAA 57.464 40.909 0.00 0.00 0.00 3.02
152 153 4.893608 TCTGAATGAACGTCCATCTCAAA 58.106 39.130 0.00 0.00 0.00 2.69
153 154 4.931601 TCTGAATGAACGTCCATCTCAAAG 59.068 41.667 0.00 0.00 0.00 2.77
154 155 4.002982 TGAATGAACGTCCATCTCAAAGG 58.997 43.478 0.00 0.00 0.00 3.11
155 156 3.703001 ATGAACGTCCATCTCAAAGGT 57.297 42.857 0.00 0.00 0.00 3.50
156 157 2.766313 TGAACGTCCATCTCAAAGGTG 58.234 47.619 0.00 0.00 0.00 4.00
157 158 1.464997 GAACGTCCATCTCAAAGGTGC 59.535 52.381 0.00 0.00 0.00 5.01
158 159 0.670546 ACGTCCATCTCAAAGGTGCG 60.671 55.000 0.00 0.00 0.00 5.34
159 160 0.670546 CGTCCATCTCAAAGGTGCGT 60.671 55.000 0.00 0.00 0.00 5.24
160 161 1.523758 GTCCATCTCAAAGGTGCGTT 58.476 50.000 0.00 0.00 0.00 4.84
161 162 1.880027 GTCCATCTCAAAGGTGCGTTT 59.120 47.619 0.00 0.00 0.00 3.60
162 163 2.293399 GTCCATCTCAAAGGTGCGTTTT 59.707 45.455 0.00 0.00 0.00 2.43
163 164 2.293122 TCCATCTCAAAGGTGCGTTTTG 59.707 45.455 2.10 2.10 36.98 2.44
164 165 2.034558 CCATCTCAAAGGTGCGTTTTGT 59.965 45.455 7.11 0.00 36.97 2.83
165 166 3.252215 CCATCTCAAAGGTGCGTTTTGTA 59.748 43.478 7.11 0.14 36.97 2.41
166 167 3.955771 TCTCAAAGGTGCGTTTTGTAC 57.044 42.857 7.11 0.00 36.97 2.90
167 168 3.537580 TCTCAAAGGTGCGTTTTGTACT 58.462 40.909 0.00 0.00 36.97 2.73
168 169 4.695396 TCTCAAAGGTGCGTTTTGTACTA 58.305 39.130 0.00 0.00 36.97 1.82
169 170 4.508861 TCTCAAAGGTGCGTTTTGTACTAC 59.491 41.667 0.00 0.00 36.97 2.73
170 171 4.190001 TCAAAGGTGCGTTTTGTACTACA 58.810 39.130 0.00 0.00 36.97 2.74
171 172 4.271533 TCAAAGGTGCGTTTTGTACTACAG 59.728 41.667 0.00 0.00 36.97 2.74
172 173 3.464111 AGGTGCGTTTTGTACTACAGT 57.536 42.857 0.00 0.00 33.14 3.55
173 174 3.128349 AGGTGCGTTTTGTACTACAGTG 58.872 45.455 0.00 0.00 33.14 3.66
174 175 2.349155 GGTGCGTTTTGTACTACAGTGC 60.349 50.000 0.00 0.00 33.14 4.40
175 176 2.542595 GTGCGTTTTGTACTACAGTGCT 59.457 45.455 0.00 0.00 0.00 4.40
176 177 3.737266 GTGCGTTTTGTACTACAGTGCTA 59.263 43.478 0.00 0.00 0.00 3.49
177 178 3.985279 TGCGTTTTGTACTACAGTGCTAG 59.015 43.478 0.00 0.00 0.00 3.42
178 179 3.181533 GCGTTTTGTACTACAGTGCTAGC 60.182 47.826 8.10 8.10 0.00 3.42
179 180 4.235360 CGTTTTGTACTACAGTGCTAGCT 58.765 43.478 17.23 0.00 0.00 3.32
180 181 5.396484 CGTTTTGTACTACAGTGCTAGCTA 58.604 41.667 17.23 0.00 0.00 3.32
181 182 5.860182 CGTTTTGTACTACAGTGCTAGCTAA 59.140 40.000 17.23 0.00 0.00 3.09
182 183 6.530534 CGTTTTGTACTACAGTGCTAGCTAAT 59.469 38.462 17.23 0.00 0.00 1.73
183 184 7.063074 CGTTTTGTACTACAGTGCTAGCTAATT 59.937 37.037 17.23 0.44 0.00 1.40
184 185 9.362539 GTTTTGTACTACAGTGCTAGCTAATTA 57.637 33.333 17.23 1.67 0.00 1.40
185 186 9.932207 TTTTGTACTACAGTGCTAGCTAATTAA 57.068 29.630 17.23 0.00 0.00 1.40
186 187 9.582431 TTTGTACTACAGTGCTAGCTAATTAAG 57.418 33.333 17.23 8.86 0.00 1.85
187 188 8.289939 TGTACTACAGTGCTAGCTAATTAAGT 57.710 34.615 17.23 13.85 0.00 2.24
188 189 8.746530 TGTACTACAGTGCTAGCTAATTAAGTT 58.253 33.333 17.23 0.00 0.00 2.66
189 190 9.021863 GTACTACAGTGCTAGCTAATTAAGTTG 57.978 37.037 17.23 8.22 0.00 3.16
190 191 7.612677 ACTACAGTGCTAGCTAATTAAGTTGT 58.387 34.615 17.23 8.78 0.00 3.32
191 192 8.095169 ACTACAGTGCTAGCTAATTAAGTTGTT 58.905 33.333 17.23 0.00 0.00 2.83
192 193 7.745620 ACAGTGCTAGCTAATTAAGTTGTTT 57.254 32.000 17.23 0.00 0.00 2.83
193 194 8.166422 ACAGTGCTAGCTAATTAAGTTGTTTT 57.834 30.769 17.23 0.00 0.00 2.43
194 195 8.630037 ACAGTGCTAGCTAATTAAGTTGTTTTT 58.370 29.630 17.23 0.00 0.00 1.94
195 196 9.118236 CAGTGCTAGCTAATTAAGTTGTTTTTC 57.882 33.333 17.23 0.00 0.00 2.29
196 197 9.067986 AGTGCTAGCTAATTAAGTTGTTTTTCT 57.932 29.630 17.23 0.00 0.00 2.52
197 198 9.678941 GTGCTAGCTAATTAAGTTGTTTTTCTT 57.321 29.630 17.23 0.00 0.00 2.52
198 199 9.677567 TGCTAGCTAATTAAGTTGTTTTTCTTG 57.322 29.630 17.23 0.00 0.00 3.02
199 200 9.678941 GCTAGCTAATTAAGTTGTTTTTCTTGT 57.321 29.630 7.70 0.00 0.00 3.16
202 203 9.529325 AGCTAATTAAGTTGTTTTTCTTGTTCC 57.471 29.630 0.00 0.00 0.00 3.62
203 204 9.529325 GCTAATTAAGTTGTTTTTCTTGTTCCT 57.471 29.630 0.00 0.00 0.00 3.36
205 206 8.942338 AATTAAGTTGTTTTTCTTGTTCCTCC 57.058 30.769 0.00 0.00 0.00 4.30
206 207 7.712204 TTAAGTTGTTTTTCTTGTTCCTCCT 57.288 32.000 0.00 0.00 0.00 3.69
207 208 6.605471 AAGTTGTTTTTCTTGTTCCTCCTT 57.395 33.333 0.00 0.00 0.00 3.36
208 209 6.208988 AGTTGTTTTTCTTGTTCCTCCTTC 57.791 37.500 0.00 0.00 0.00 3.46
209 210 5.714806 AGTTGTTTTTCTTGTTCCTCCTTCA 59.285 36.000 0.00 0.00 0.00 3.02
210 211 5.576447 TGTTTTTCTTGTTCCTCCTTCAC 57.424 39.130 0.00 0.00 0.00 3.18
211 212 5.261216 TGTTTTTCTTGTTCCTCCTTCACT 58.739 37.500 0.00 0.00 0.00 3.41
212 213 6.419791 TGTTTTTCTTGTTCCTCCTTCACTA 58.580 36.000 0.00 0.00 0.00 2.74
213 214 6.317893 TGTTTTTCTTGTTCCTCCTTCACTAC 59.682 38.462 0.00 0.00 0.00 2.73
214 215 5.888982 TTTCTTGTTCCTCCTTCACTACT 57.111 39.130 0.00 0.00 0.00 2.57
215 216 5.888982 TTCTTGTTCCTCCTTCACTACTT 57.111 39.130 0.00 0.00 0.00 2.24
216 217 5.215252 TCTTGTTCCTCCTTCACTACTTG 57.785 43.478 0.00 0.00 0.00 3.16
217 218 4.040461 TCTTGTTCCTCCTTCACTACTTGG 59.960 45.833 0.00 0.00 0.00 3.61
218 219 3.583228 TGTTCCTCCTTCACTACTTGGA 58.417 45.455 0.00 0.00 0.00 3.53
219 220 3.971305 TGTTCCTCCTTCACTACTTGGAA 59.029 43.478 0.00 0.00 0.00 3.53
220 221 4.410883 TGTTCCTCCTTCACTACTTGGAAA 59.589 41.667 0.00 0.00 34.47 3.13
237 238 7.896383 CTTGGAAAGGGGATTATATTGTTGA 57.104 36.000 0.00 0.00 41.27 3.18
238 239 7.654022 TTGGAAAGGGGATTATATTGTTGAC 57.346 36.000 0.00 0.00 0.00 3.18
239 240 6.980577 TGGAAAGGGGATTATATTGTTGACT 58.019 36.000 0.00 0.00 0.00 3.41
240 241 6.833416 TGGAAAGGGGATTATATTGTTGACTG 59.167 38.462 0.00 0.00 0.00 3.51
241 242 6.239036 GGAAAGGGGATTATATTGTTGACTGC 60.239 42.308 0.00 0.00 0.00 4.40
242 243 5.653255 AGGGGATTATATTGTTGACTGCT 57.347 39.130 0.00 0.00 0.00 4.24
243 244 6.763715 AGGGGATTATATTGTTGACTGCTA 57.236 37.500 0.00 0.00 0.00 3.49
244 245 6.773638 AGGGGATTATATTGTTGACTGCTAG 58.226 40.000 0.00 0.00 0.00 3.42
245 246 5.412904 GGGGATTATATTGTTGACTGCTAGC 59.587 44.000 8.10 8.10 0.00 3.42
246 247 6.234177 GGGATTATATTGTTGACTGCTAGCT 58.766 40.000 17.23 0.00 0.00 3.32
247 248 6.148480 GGGATTATATTGTTGACTGCTAGCTG 59.852 42.308 19.01 19.01 0.00 4.24
248 249 6.931281 GGATTATATTGTTGACTGCTAGCTGA 59.069 38.462 26.29 3.79 0.00 4.26
249 250 7.605691 GGATTATATTGTTGACTGCTAGCTGAT 59.394 37.037 26.29 11.70 0.00 2.90
250 251 8.915057 ATTATATTGTTGACTGCTAGCTGATT 57.085 30.769 26.29 6.52 0.00 2.57
251 252 6.857777 ATATTGTTGACTGCTAGCTGATTC 57.142 37.500 26.29 15.24 0.00 2.52
252 253 3.969287 TGTTGACTGCTAGCTGATTCT 57.031 42.857 26.29 5.41 0.00 2.40
253 254 5.405935 TTGTTGACTGCTAGCTGATTCTA 57.594 39.130 26.29 9.84 0.00 2.10
254 255 4.748892 TGTTGACTGCTAGCTGATTCTAC 58.251 43.478 26.29 19.46 0.00 2.59
255 256 4.464244 TGTTGACTGCTAGCTGATTCTACT 59.536 41.667 26.29 3.57 0.00 2.57
256 257 5.652452 TGTTGACTGCTAGCTGATTCTACTA 59.348 40.000 26.29 10.17 0.00 1.82
257 258 6.152831 TGTTGACTGCTAGCTGATTCTACTAA 59.847 38.462 26.29 5.89 0.00 2.24
258 259 6.137794 TGACTGCTAGCTGATTCTACTAAC 57.862 41.667 26.29 6.45 0.00 2.34
259 260 5.652452 TGACTGCTAGCTGATTCTACTAACA 59.348 40.000 26.29 8.43 0.00 2.41
260 261 6.322456 TGACTGCTAGCTGATTCTACTAACAT 59.678 38.462 26.29 0.66 0.00 2.71
261 262 6.744112 ACTGCTAGCTGATTCTACTAACATC 58.256 40.000 26.29 0.00 0.00 3.06
262 263 6.322456 ACTGCTAGCTGATTCTACTAACATCA 59.678 38.462 26.29 0.00 0.00 3.07
263 264 7.112452 TGCTAGCTGATTCTACTAACATCAA 57.888 36.000 17.23 0.00 0.00 2.57
264 265 7.555965 TGCTAGCTGATTCTACTAACATCAAA 58.444 34.615 17.23 0.00 0.00 2.69
265 266 7.708322 TGCTAGCTGATTCTACTAACATCAAAG 59.292 37.037 17.23 0.00 0.00 2.77
266 267 6.917217 AGCTGATTCTACTAACATCAAAGC 57.083 37.500 0.00 0.00 0.00 3.51
267 268 5.819901 AGCTGATTCTACTAACATCAAAGCC 59.180 40.000 0.00 0.00 0.00 4.35
268 269 5.819901 GCTGATTCTACTAACATCAAAGCCT 59.180 40.000 0.00 0.00 0.00 4.58
269 270 6.018343 GCTGATTCTACTAACATCAAAGCCTC 60.018 42.308 0.00 0.00 0.00 4.70
270 271 6.946340 TGATTCTACTAACATCAAAGCCTCA 58.054 36.000 0.00 0.00 0.00 3.86
271 272 7.044181 TGATTCTACTAACATCAAAGCCTCAG 58.956 38.462 0.00 0.00 0.00 3.35
272 273 5.344743 TCTACTAACATCAAAGCCTCAGG 57.655 43.478 0.00 0.00 0.00 3.86
273 274 3.356529 ACTAACATCAAAGCCTCAGGG 57.643 47.619 0.00 0.00 0.00 4.45
274 275 2.644798 ACTAACATCAAAGCCTCAGGGT 59.355 45.455 0.00 0.00 33.45 4.34
275 276 2.206576 AACATCAAAGCCTCAGGGTC 57.793 50.000 0.00 0.00 30.76 4.46
276 277 1.067295 ACATCAAAGCCTCAGGGTCA 58.933 50.000 0.00 0.00 30.76 4.02
277 278 1.004044 ACATCAAAGCCTCAGGGTCAG 59.996 52.381 0.00 0.00 30.76 3.51
278 279 1.004044 CATCAAAGCCTCAGGGTCAGT 59.996 52.381 0.00 0.00 30.76 3.41
279 280 0.397941 TCAAAGCCTCAGGGTCAGTG 59.602 55.000 0.00 0.00 30.76 3.66
280 281 0.109342 CAAAGCCTCAGGGTCAGTGT 59.891 55.000 0.00 0.00 30.76 3.55
281 282 0.846693 AAAGCCTCAGGGTCAGTGTT 59.153 50.000 0.00 0.00 30.76 3.32
282 283 0.398318 AAGCCTCAGGGTCAGTGTTC 59.602 55.000 0.00 0.00 30.76 3.18
283 284 0.764369 AGCCTCAGGGTCAGTGTTCA 60.764 55.000 0.00 0.00 34.45 3.18
284 285 0.321122 GCCTCAGGGTCAGTGTTCAG 60.321 60.000 0.00 0.00 34.45 3.02
285 286 1.051812 CCTCAGGGTCAGTGTTCAGT 58.948 55.000 0.00 0.00 0.00 3.41
286 287 2.248248 CCTCAGGGTCAGTGTTCAGTA 58.752 52.381 0.00 0.00 0.00 2.74
287 288 2.834549 CCTCAGGGTCAGTGTTCAGTAT 59.165 50.000 0.00 0.00 0.00 2.12
288 289 4.023980 CCTCAGGGTCAGTGTTCAGTATA 58.976 47.826 0.00 0.00 0.00 1.47
289 290 4.651503 CCTCAGGGTCAGTGTTCAGTATAT 59.348 45.833 0.00 0.00 0.00 0.86
290 291 5.452496 CCTCAGGGTCAGTGTTCAGTATATG 60.452 48.000 0.00 0.00 0.00 1.78
291 292 4.405680 TCAGGGTCAGTGTTCAGTATATGG 59.594 45.833 0.00 0.00 0.00 2.74
292 293 4.405680 CAGGGTCAGTGTTCAGTATATGGA 59.594 45.833 0.00 0.00 0.00 3.41
293 294 5.070981 CAGGGTCAGTGTTCAGTATATGGAT 59.929 44.000 0.00 0.00 0.00 3.41
294 295 6.267699 CAGGGTCAGTGTTCAGTATATGGATA 59.732 42.308 0.00 0.00 0.00 2.59
295 296 6.844388 AGGGTCAGTGTTCAGTATATGGATAA 59.156 38.462 0.00 0.00 0.00 1.75
296 297 7.514127 AGGGTCAGTGTTCAGTATATGGATAAT 59.486 37.037 0.00 0.00 0.00 1.28
297 298 8.812972 GGGTCAGTGTTCAGTATATGGATAATA 58.187 37.037 0.00 0.00 0.00 0.98
298 299 9.640963 GGTCAGTGTTCAGTATATGGATAATAC 57.359 37.037 0.00 0.00 0.00 1.89
323 326 7.120923 TCTAAGATTAAAGCGTCAGGGTAAT 57.879 36.000 0.00 0.00 0.00 1.89
326 329 6.679327 AGATTAAAGCGTCAGGGTAATTTC 57.321 37.500 0.00 0.00 0.00 2.17
358 361 8.715088 ACGTCAATAGTAAATGTAACTGGAAAC 58.285 33.333 0.00 0.00 0.00 2.78
421 428 1.438651 TAATCTGTGTCCTTGCACGC 58.561 50.000 0.00 0.00 41.94 5.34
479 486 6.856426 CCTTTTTACTTGAATTTCACCTCGTC 59.144 38.462 0.00 0.00 0.00 4.20
518 525 1.671328 CACCATGATTGAGCTGCTCTG 59.329 52.381 28.04 17.83 0.00 3.35
525 532 0.319728 TTGAGCTGCTCTGTCTCCAC 59.680 55.000 28.04 1.81 0.00 4.02
570 609 6.016276 TCCAGCCATCTCAAAGTTTAGTTTTC 60.016 38.462 0.00 0.00 0.00 2.29
626 745 2.190398 AAACCTTTTTCTTGCCCCCT 57.810 45.000 0.00 0.00 0.00 4.79
636 755 2.203549 CTTGCCCCCTCCCTTCAGTC 62.204 65.000 0.00 0.00 0.00 3.51
646 765 3.350833 CTCCCTTCAGTCATTGGAAAGG 58.649 50.000 0.00 0.00 0.00 3.11
662 781 3.633986 GGAAAGGGGATTATTGACTGCTG 59.366 47.826 0.00 0.00 0.00 4.41
704 825 1.832883 TTGTTATTGGTGCGCATCCT 58.167 45.000 19.88 8.21 0.00 3.24
780 933 5.180680 GTGTTAAGATTAAAGCGTGAGGGTT 59.819 40.000 0.00 0.00 38.16 4.11
798 951 6.086785 AGGGTTCGTATTCAGTAGATAAGC 57.913 41.667 0.00 0.00 0.00 3.09
806 959 8.689061 TCGTATTCAGTAGATAAGCTTAAACCA 58.311 33.333 10.85 0.00 0.00 3.67
839 1000 1.338769 GCGTCAGGGTAAAGTGTCCAT 60.339 52.381 0.00 0.00 0.00 3.41
1078 1306 2.268920 CAGATGGTGTGGGGACGG 59.731 66.667 0.00 0.00 0.00 4.79
1323 1554 1.226323 CTTGCTCTTCTGCATGCGC 60.226 57.895 14.09 9.64 42.96 6.09
1435 1666 2.662866 TCGTCAATCTCGGGTCCTATT 58.337 47.619 0.00 0.00 0.00 1.73
1436 1667 3.028850 TCGTCAATCTCGGGTCCTATTT 58.971 45.455 0.00 0.00 0.00 1.40
1681 1918 2.083774 TCAATGACGAGGCAATCCAAC 58.916 47.619 0.00 0.00 33.74 3.77
1785 2022 2.361737 GGAAACTCCCAGCTGGCC 60.362 66.667 28.39 17.81 0.00 5.36
1794 2031 2.753043 CAGCTGGCCGGAAATGCT 60.753 61.111 18.31 5.65 0.00 3.79
2033 2270 4.778143 GCCCGATGACGCCTGGTT 62.778 66.667 0.00 0.00 38.29 3.67
2065 2302 8.035394 TCAAGAAGCAGGTCTGTACTTAATTAG 58.965 37.037 0.00 0.00 0.00 1.73
2091 2339 8.354011 ACGTTAAATCTCTTTCATTATCTCCG 57.646 34.615 0.00 0.00 0.00 4.63
2104 2352 7.526142 TCATTATCTCCGTCTACTTGCTAAT 57.474 36.000 0.00 0.00 0.00 1.73
2201 2601 7.639945 AGATTACTTTGCTAGTGTCAACAAAC 58.360 34.615 2.79 0.00 37.73 2.93
2216 2616 4.050553 CAACAAACCATGGTGCTAAACAG 58.949 43.478 20.60 4.98 40.52 3.16
2262 2712 1.979469 GACACGTTCAGAGACACGATG 59.021 52.381 0.08 0.00 39.76 3.84
2282 2732 5.551760 ATGTTGTTTAATCGAGCTTGAGG 57.448 39.130 10.06 0.00 0.00 3.86
2339 2789 5.467399 TCGTTTTTACCAATGACGAGACATT 59.533 36.000 0.00 0.00 40.50 2.71
2367 2818 6.376299 TCGTATGTCCATGTAGTGAGTTAACT 59.624 38.462 8.13 8.13 0.00 2.24
2376 2827 8.567948 CCATGTAGTGAGTTAACTTTTTGTGAT 58.432 33.333 10.02 0.00 0.00 3.06
2424 2876 3.760684 GGATGAAAATCCAAGTGCTCAGT 59.239 43.478 0.00 0.00 40.43 3.41
2449 2970 9.730420 GTTACTCAACAGTGTCATAACAATTTT 57.270 29.630 0.00 0.00 34.24 1.82
2472 2993 2.890945 GTGAACCCCTGCAAATACAACT 59.109 45.455 0.00 0.00 0.00 3.16
2534 3057 5.831525 TGGGTCGTATATTCATGTAGTGAGT 59.168 40.000 0.00 0.00 38.29 3.41
2537 3060 7.806960 GGGTCGTATATTCATGTAGTGAGTAAC 59.193 40.741 0.00 0.00 38.29 2.50
2578 3105 6.526526 TGGCGTAGTATTATGCATTTTAGGA 58.473 36.000 3.54 0.00 42.44 2.94
2653 3342 3.317711 TGTTCCATTGCACAAATCTTCGT 59.682 39.130 0.00 0.00 0.00 3.85
2654 3343 4.517075 TGTTCCATTGCACAAATCTTCGTA 59.483 37.500 0.00 0.00 0.00 3.43
2663 3352 6.367421 TGCACAAATCTTCGTAATGTACAAC 58.633 36.000 0.00 0.00 0.00 3.32
2791 3815 5.615925 ACCTTGATACATCAACTAGTCCC 57.384 43.478 0.00 0.00 41.51 4.46
2794 3818 6.051717 CCTTGATACATCAACTAGTCCCTTG 58.948 44.000 0.00 0.00 41.51 3.61
2872 3908 8.617290 AATTAATTGTATCGGTCCCTTGTATC 57.383 34.615 0.00 0.00 0.00 2.24
2932 3968 3.187700 CCACATCAGTACGCTAAAGGAC 58.812 50.000 0.00 0.00 0.00 3.85
2948 3984 5.376854 AAAGGACATCGGACTGAAAATTG 57.623 39.130 0.00 0.00 0.00 2.32
3217 4254 3.355378 TGCAATGTGGATTAGTGAAGGG 58.645 45.455 0.00 0.00 0.00 3.95
3507 4544 5.749462 ACTTGATTGGAAATCTCTACAGGG 58.251 41.667 1.99 0.00 0.00 4.45
3576 4613 2.578021 AGCCTGGTGATTCACTGGTTAT 59.422 45.455 21.40 11.42 34.40 1.89
3623 4660 2.803030 AGAATCTGCAGATGTGGCTT 57.197 45.000 29.34 13.76 34.49 4.35
3656 4693 1.002576 CGTTGCATCAACTCAAGCACA 60.003 47.619 7.91 0.00 41.62 4.57
4243 5933 0.534203 TGCCCCTCGACAACTTGAAC 60.534 55.000 0.00 0.00 0.00 3.18
4410 6103 8.885494 TCATTTCCAAGGTTAAACAAATTGAG 57.115 30.769 0.00 0.00 0.00 3.02
5035 6732 8.865590 AAAATCAAACATACGTACAAGCTTTT 57.134 26.923 0.00 0.00 0.00 2.27
5446 7372 1.581954 CGAGTCCACTGTCTCGCTT 59.418 57.895 4.75 0.00 44.82 4.68
5869 7817 2.187946 CGTCCATGGCTCCTCACC 59.812 66.667 6.96 0.00 0.00 4.02
5886 7834 0.845102 ACCCCTTACCAGTTGGAGGG 60.845 60.000 15.08 15.08 44.83 4.30
6020 7974 2.622942 GGCTGGCATCCGAATAATCAAA 59.377 45.455 0.00 0.00 0.00 2.69
6034 7988 5.971895 ATAATCAAAATGATTTGCGGTGC 57.028 34.783 10.53 0.00 44.03 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.057946 GTGAGGTGAAATTCAAGTGCTCC 60.058 47.826 0.00 0.00 0.00 4.70
6 7 5.755813 CTCAAGTGAGGTGAAATTCAAGTG 58.244 41.667 0.00 0.00 38.48 3.16
7 8 4.276926 GCTCAAGTGAGGTGAAATTCAAGT 59.723 41.667 10.25 0.00 42.29 3.16
9 10 3.569701 GGCTCAAGTGAGGTGAAATTCAA 59.430 43.478 10.25 0.00 42.29 2.69
11 12 2.160417 CGGCTCAAGTGAGGTGAAATTC 59.840 50.000 10.25 0.00 42.29 2.17
12 13 2.154462 CGGCTCAAGTGAGGTGAAATT 58.846 47.619 10.25 0.00 42.29 1.82
13 14 1.611673 CCGGCTCAAGTGAGGTGAAAT 60.612 52.381 10.25 0.00 42.29 2.17
14 15 0.250295 CCGGCTCAAGTGAGGTGAAA 60.250 55.000 10.25 0.00 42.29 2.69
15 16 1.118965 TCCGGCTCAAGTGAGGTGAA 61.119 55.000 10.25 0.00 42.29 3.18
16 17 1.533033 TCCGGCTCAAGTGAGGTGA 60.533 57.895 10.25 0.00 42.29 4.02
18 19 2.286523 CCTCCGGCTCAAGTGAGGT 61.287 63.158 10.25 0.00 42.29 3.85
19 20 2.581354 CCTCCGGCTCAAGTGAGG 59.419 66.667 10.25 0.00 42.29 3.86
20 21 2.125350 GCCTCCGGCTCAAGTGAG 60.125 66.667 0.00 3.84 46.69 3.51
32 33 3.100862 GAAGATGCGCGTTGCCTCC 62.101 63.158 8.43 0.00 45.60 4.30
33 34 2.029904 GAGAAGATGCGCGTTGCCTC 62.030 60.000 8.43 6.94 45.60 4.70
34 35 2.046892 AGAAGATGCGCGTTGCCT 60.047 55.556 8.43 0.00 45.60 4.75
35 36 2.401195 GAGAAGATGCGCGTTGCC 59.599 61.111 8.43 0.00 45.60 4.52
36 37 2.401195 GGAGAAGATGCGCGTTGC 59.599 61.111 8.43 0.00 46.70 4.17
37 38 2.697425 CGGAGAAGATGCGCGTTG 59.303 61.111 8.43 0.00 35.37 4.10
42 43 2.956964 GACGGCGGAGAAGATGCG 60.957 66.667 13.24 0.00 46.94 4.73
43 44 2.956964 CGACGGCGGAGAAGATGC 60.957 66.667 13.24 0.00 0.00 3.91
72 73 2.485122 GTACCCAATGCACGCAGC 59.515 61.111 0.00 0.00 45.96 5.25
73 74 3.187058 GGTACCCAATGCACGCAG 58.813 61.111 0.00 0.00 0.00 5.18
86 87 1.294459 GGTGAAGACGTGGGGGTAC 59.706 63.158 0.00 0.00 0.00 3.34
87 88 0.545787 ATGGTGAAGACGTGGGGGTA 60.546 55.000 0.00 0.00 0.00 3.69
88 89 1.846124 ATGGTGAAGACGTGGGGGT 60.846 57.895 0.00 0.00 0.00 4.95
89 90 1.377202 CATGGTGAAGACGTGGGGG 60.377 63.158 0.00 0.00 0.00 5.40
90 91 0.253044 ATCATGGTGAAGACGTGGGG 59.747 55.000 0.00 0.00 0.00 4.96
91 92 2.009774 GAATCATGGTGAAGACGTGGG 58.990 52.381 0.00 0.00 0.00 4.61
92 93 2.416547 GTGAATCATGGTGAAGACGTGG 59.583 50.000 0.00 0.00 0.00 4.94
93 94 3.329386 AGTGAATCATGGTGAAGACGTG 58.671 45.455 0.00 0.00 0.00 4.49
94 95 3.685139 AGTGAATCATGGTGAAGACGT 57.315 42.857 0.00 0.00 0.00 4.34
95 96 3.425359 GCAAGTGAATCATGGTGAAGACG 60.425 47.826 0.00 0.00 0.00 4.18
96 97 3.755378 AGCAAGTGAATCATGGTGAAGAC 59.245 43.478 0.00 0.00 0.00 3.01
97 98 4.005650 GAGCAAGTGAATCATGGTGAAGA 58.994 43.478 0.00 0.00 0.00 2.87
98 99 4.008330 AGAGCAAGTGAATCATGGTGAAG 58.992 43.478 0.00 0.00 0.00 3.02
99 100 4.005650 GAGAGCAAGTGAATCATGGTGAA 58.994 43.478 0.00 0.00 0.00 3.18
100 101 3.262660 AGAGAGCAAGTGAATCATGGTGA 59.737 43.478 0.00 0.00 0.00 4.02
101 102 3.607741 AGAGAGCAAGTGAATCATGGTG 58.392 45.455 0.00 0.00 0.00 4.17
102 103 3.678252 CGAGAGAGCAAGTGAATCATGGT 60.678 47.826 0.00 0.00 0.00 3.55
103 104 2.864946 CGAGAGAGCAAGTGAATCATGG 59.135 50.000 0.00 0.00 0.00 3.66
104 105 2.284684 GCGAGAGAGCAAGTGAATCATG 59.715 50.000 0.00 0.00 37.05 3.07
105 106 2.548875 GCGAGAGAGCAAGTGAATCAT 58.451 47.619 0.00 0.00 37.05 2.45
106 107 1.404717 GGCGAGAGAGCAAGTGAATCA 60.405 52.381 0.00 0.00 39.27 2.57
107 108 1.285578 GGCGAGAGAGCAAGTGAATC 58.714 55.000 0.00 0.00 39.27 2.52
108 109 0.610174 TGGCGAGAGAGCAAGTGAAT 59.390 50.000 0.00 0.00 39.27 2.57
109 110 0.319900 GTGGCGAGAGAGCAAGTGAA 60.320 55.000 0.00 0.00 39.27 3.18
110 111 1.290324 GTGGCGAGAGAGCAAGTGA 59.710 57.895 0.00 0.00 39.27 3.41
111 112 0.390866 ATGTGGCGAGAGAGCAAGTG 60.391 55.000 0.00 0.00 39.27 3.16
112 113 0.108424 GATGTGGCGAGAGAGCAAGT 60.108 55.000 0.00 0.00 39.27 3.16
113 114 0.175302 AGATGTGGCGAGAGAGCAAG 59.825 55.000 0.00 0.00 39.27 4.01
114 115 0.108472 CAGATGTGGCGAGAGAGCAA 60.108 55.000 0.00 0.00 39.27 3.91
115 116 0.967380 TCAGATGTGGCGAGAGAGCA 60.967 55.000 0.00 0.00 39.27 4.26
116 117 0.174389 TTCAGATGTGGCGAGAGAGC 59.826 55.000 0.00 0.00 0.00 4.09
117 118 2.100418 TCATTCAGATGTGGCGAGAGAG 59.900 50.000 0.00 0.00 34.77 3.20
118 119 2.102578 TCATTCAGATGTGGCGAGAGA 58.897 47.619 0.00 0.00 34.77 3.10
119 120 2.591571 TCATTCAGATGTGGCGAGAG 57.408 50.000 0.00 0.00 34.77 3.20
120 121 2.621338 GTTCATTCAGATGTGGCGAGA 58.379 47.619 0.00 0.00 34.77 4.04
121 122 1.325640 CGTTCATTCAGATGTGGCGAG 59.674 52.381 0.00 0.00 34.77 5.03
122 123 1.337728 ACGTTCATTCAGATGTGGCGA 60.338 47.619 0.00 0.00 34.77 5.54
123 124 1.061131 GACGTTCATTCAGATGTGGCG 59.939 52.381 0.00 0.00 34.77 5.69
124 125 1.398390 GGACGTTCATTCAGATGTGGC 59.602 52.381 0.00 0.00 34.77 5.01
125 126 2.698803 TGGACGTTCATTCAGATGTGG 58.301 47.619 0.00 0.00 34.77 4.17
126 127 4.186926 AGATGGACGTTCATTCAGATGTG 58.813 43.478 11.50 0.00 34.77 3.21
127 128 4.081476 TGAGATGGACGTTCATTCAGATGT 60.081 41.667 11.50 0.00 34.77 3.06
128 129 4.436332 TGAGATGGACGTTCATTCAGATG 58.564 43.478 11.50 0.00 34.46 2.90
129 130 4.743057 TGAGATGGACGTTCATTCAGAT 57.257 40.909 11.50 0.00 0.00 2.90
130 131 4.535526 TTGAGATGGACGTTCATTCAGA 57.464 40.909 11.50 5.60 0.00 3.27
131 132 4.093998 CCTTTGAGATGGACGTTCATTCAG 59.906 45.833 11.50 6.15 0.00 3.02
132 133 4.002982 CCTTTGAGATGGACGTTCATTCA 58.997 43.478 11.50 13.15 0.00 2.57
133 134 4.003648 ACCTTTGAGATGGACGTTCATTC 58.996 43.478 11.50 10.80 0.00 2.67
134 135 3.753272 CACCTTTGAGATGGACGTTCATT 59.247 43.478 11.50 0.84 0.00 2.57
135 136 3.338249 CACCTTTGAGATGGACGTTCAT 58.662 45.455 9.71 9.71 0.00 2.57
136 137 2.766313 CACCTTTGAGATGGACGTTCA 58.234 47.619 0.00 0.00 0.00 3.18
137 138 1.464997 GCACCTTTGAGATGGACGTTC 59.535 52.381 0.00 0.00 0.00 3.95
138 139 1.523758 GCACCTTTGAGATGGACGTT 58.476 50.000 0.00 0.00 0.00 3.99
139 140 0.670546 CGCACCTTTGAGATGGACGT 60.671 55.000 0.00 0.00 0.00 4.34
140 141 0.670546 ACGCACCTTTGAGATGGACG 60.671 55.000 0.00 0.00 34.50 4.79
141 142 1.523758 AACGCACCTTTGAGATGGAC 58.476 50.000 0.00 0.00 0.00 4.02
142 143 2.270352 AAACGCACCTTTGAGATGGA 57.730 45.000 0.00 0.00 0.00 3.41
143 144 2.034558 ACAAAACGCACCTTTGAGATGG 59.965 45.455 8.64 0.00 37.25 3.51
144 145 3.354089 ACAAAACGCACCTTTGAGATG 57.646 42.857 8.64 0.00 37.25 2.90
145 146 4.134563 AGTACAAAACGCACCTTTGAGAT 58.865 39.130 8.64 0.00 37.25 2.75
146 147 3.537580 AGTACAAAACGCACCTTTGAGA 58.462 40.909 8.64 0.00 37.25 3.27
147 148 3.963383 AGTACAAAACGCACCTTTGAG 57.037 42.857 8.64 0.00 37.25 3.02
148 149 4.190001 TGTAGTACAAAACGCACCTTTGA 58.810 39.130 0.00 0.00 37.25 2.69
149 150 4.034742 ACTGTAGTACAAAACGCACCTTTG 59.965 41.667 4.21 1.69 39.26 2.77
150 151 4.034742 CACTGTAGTACAAAACGCACCTTT 59.965 41.667 4.21 0.00 0.00 3.11
151 152 3.558418 CACTGTAGTACAAAACGCACCTT 59.442 43.478 4.21 0.00 0.00 3.50
152 153 3.128349 CACTGTAGTACAAAACGCACCT 58.872 45.455 4.21 0.00 0.00 4.00
153 154 2.349155 GCACTGTAGTACAAAACGCACC 60.349 50.000 4.21 0.00 0.00 5.01
154 155 2.542595 AGCACTGTAGTACAAAACGCAC 59.457 45.455 4.21 0.00 0.00 5.34
155 156 2.828877 AGCACTGTAGTACAAAACGCA 58.171 42.857 4.21 0.00 0.00 5.24
156 157 3.181533 GCTAGCACTGTAGTACAAAACGC 60.182 47.826 10.63 4.85 0.00 4.84
157 158 4.235360 AGCTAGCACTGTAGTACAAAACG 58.765 43.478 18.83 0.00 0.00 3.60
158 159 7.829378 ATTAGCTAGCACTGTAGTACAAAAC 57.171 36.000 18.83 0.00 0.00 2.43
159 160 9.932207 TTAATTAGCTAGCACTGTAGTACAAAA 57.068 29.630 18.83 0.00 0.00 2.44
160 161 9.582431 CTTAATTAGCTAGCACTGTAGTACAAA 57.418 33.333 18.83 0.00 0.00 2.83
161 162 8.746530 ACTTAATTAGCTAGCACTGTAGTACAA 58.253 33.333 18.83 0.00 0.00 2.41
162 163 8.289939 ACTTAATTAGCTAGCACTGTAGTACA 57.710 34.615 18.83 2.36 0.00 2.90
163 164 9.021863 CAACTTAATTAGCTAGCACTGTAGTAC 57.978 37.037 18.83 0.00 0.00 2.73
164 165 8.746530 ACAACTTAATTAGCTAGCACTGTAGTA 58.253 33.333 18.83 0.00 0.00 1.82
165 166 7.612677 ACAACTTAATTAGCTAGCACTGTAGT 58.387 34.615 18.83 9.74 0.00 2.73
166 167 8.480643 AACAACTTAATTAGCTAGCACTGTAG 57.519 34.615 18.83 9.10 0.00 2.74
167 168 8.842358 AAACAACTTAATTAGCTAGCACTGTA 57.158 30.769 18.83 0.00 0.00 2.74
168 169 7.745620 AAACAACTTAATTAGCTAGCACTGT 57.254 32.000 18.83 0.00 0.00 3.55
169 170 9.118236 GAAAAACAACTTAATTAGCTAGCACTG 57.882 33.333 18.83 2.15 0.00 3.66
170 171 9.067986 AGAAAAACAACTTAATTAGCTAGCACT 57.932 29.630 18.83 0.00 0.00 4.40
171 172 9.678941 AAGAAAAACAACTTAATTAGCTAGCAC 57.321 29.630 18.83 0.00 0.00 4.40
172 173 9.677567 CAAGAAAAACAACTTAATTAGCTAGCA 57.322 29.630 18.83 0.00 0.00 3.49
173 174 9.678941 ACAAGAAAAACAACTTAATTAGCTAGC 57.321 29.630 6.62 6.62 0.00 3.42
176 177 9.529325 GGAACAAGAAAAACAACTTAATTAGCT 57.471 29.630 0.00 0.00 0.00 3.32
177 178 9.529325 AGGAACAAGAAAAACAACTTAATTAGC 57.471 29.630 0.00 0.00 0.00 3.09
180 181 8.758829 AGGAGGAACAAGAAAAACAACTTAATT 58.241 29.630 0.00 0.00 0.00 1.40
181 182 8.306313 AGGAGGAACAAGAAAAACAACTTAAT 57.694 30.769 0.00 0.00 0.00 1.40
182 183 7.712204 AGGAGGAACAAGAAAAACAACTTAA 57.288 32.000 0.00 0.00 0.00 1.85
183 184 7.394923 TGAAGGAGGAACAAGAAAAACAACTTA 59.605 33.333 0.00 0.00 0.00 2.24
184 185 6.210584 TGAAGGAGGAACAAGAAAAACAACTT 59.789 34.615 0.00 0.00 0.00 2.66
185 186 5.714806 TGAAGGAGGAACAAGAAAAACAACT 59.285 36.000 0.00 0.00 0.00 3.16
186 187 5.805486 GTGAAGGAGGAACAAGAAAAACAAC 59.195 40.000 0.00 0.00 0.00 3.32
187 188 5.714806 AGTGAAGGAGGAACAAGAAAAACAA 59.285 36.000 0.00 0.00 0.00 2.83
188 189 5.261216 AGTGAAGGAGGAACAAGAAAAACA 58.739 37.500 0.00 0.00 0.00 2.83
189 190 5.836821 AGTGAAGGAGGAACAAGAAAAAC 57.163 39.130 0.00 0.00 0.00 2.43
190 191 6.659824 AGTAGTGAAGGAGGAACAAGAAAAA 58.340 36.000 0.00 0.00 0.00 1.94
191 192 6.248569 AGTAGTGAAGGAGGAACAAGAAAA 57.751 37.500 0.00 0.00 0.00 2.29
192 193 5.888982 AGTAGTGAAGGAGGAACAAGAAA 57.111 39.130 0.00 0.00 0.00 2.52
193 194 5.454755 CCAAGTAGTGAAGGAGGAACAAGAA 60.455 44.000 0.00 0.00 0.00 2.52
194 195 4.040461 CCAAGTAGTGAAGGAGGAACAAGA 59.960 45.833 0.00 0.00 0.00 3.02
195 196 4.040461 TCCAAGTAGTGAAGGAGGAACAAG 59.960 45.833 0.00 0.00 0.00 3.16
196 197 3.971305 TCCAAGTAGTGAAGGAGGAACAA 59.029 43.478 0.00 0.00 0.00 2.83
197 198 3.583228 TCCAAGTAGTGAAGGAGGAACA 58.417 45.455 0.00 0.00 0.00 3.18
198 199 4.618920 TTCCAAGTAGTGAAGGAGGAAC 57.381 45.455 0.00 0.00 0.00 3.62
199 200 4.041691 CCTTTCCAAGTAGTGAAGGAGGAA 59.958 45.833 0.00 0.00 32.29 3.36
200 201 3.583086 CCTTTCCAAGTAGTGAAGGAGGA 59.417 47.826 0.00 0.00 0.00 3.71
201 202 3.307762 CCCTTTCCAAGTAGTGAAGGAGG 60.308 52.174 2.17 0.00 0.00 4.30
202 203 3.307762 CCCCTTTCCAAGTAGTGAAGGAG 60.308 52.174 2.17 0.00 0.00 3.69
203 204 2.642807 CCCCTTTCCAAGTAGTGAAGGA 59.357 50.000 2.17 0.00 0.00 3.36
204 205 2.642807 TCCCCTTTCCAAGTAGTGAAGG 59.357 50.000 0.00 0.00 0.00 3.46
205 206 4.576330 ATCCCCTTTCCAAGTAGTGAAG 57.424 45.455 0.00 0.00 0.00 3.02
206 207 6.652205 ATAATCCCCTTTCCAAGTAGTGAA 57.348 37.500 0.00 0.00 0.00 3.18
207 208 7.947782 ATATAATCCCCTTTCCAAGTAGTGA 57.052 36.000 0.00 0.00 0.00 3.41
208 209 7.998964 ACAATATAATCCCCTTTCCAAGTAGTG 59.001 37.037 0.00 0.00 0.00 2.74
209 210 8.114301 ACAATATAATCCCCTTTCCAAGTAGT 57.886 34.615 0.00 0.00 0.00 2.73
210 211 8.850156 CAACAATATAATCCCCTTTCCAAGTAG 58.150 37.037 0.00 0.00 0.00 2.57
211 212 8.561769 TCAACAATATAATCCCCTTTCCAAGTA 58.438 33.333 0.00 0.00 0.00 2.24
212 213 7.342026 GTCAACAATATAATCCCCTTTCCAAGT 59.658 37.037 0.00 0.00 0.00 3.16
213 214 7.561356 AGTCAACAATATAATCCCCTTTCCAAG 59.439 37.037 0.00 0.00 0.00 3.61
214 215 7.341769 CAGTCAACAATATAATCCCCTTTCCAA 59.658 37.037 0.00 0.00 0.00 3.53
215 216 6.833416 CAGTCAACAATATAATCCCCTTTCCA 59.167 38.462 0.00 0.00 0.00 3.53
216 217 6.239036 GCAGTCAACAATATAATCCCCTTTCC 60.239 42.308 0.00 0.00 0.00 3.13
217 218 6.547510 AGCAGTCAACAATATAATCCCCTTTC 59.452 38.462 0.00 0.00 0.00 2.62
218 219 6.435164 AGCAGTCAACAATATAATCCCCTTT 58.565 36.000 0.00 0.00 0.00 3.11
219 220 6.018433 AGCAGTCAACAATATAATCCCCTT 57.982 37.500 0.00 0.00 0.00 3.95
220 221 5.653255 AGCAGTCAACAATATAATCCCCT 57.347 39.130 0.00 0.00 0.00 4.79
221 222 5.412904 GCTAGCAGTCAACAATATAATCCCC 59.587 44.000 10.63 0.00 0.00 4.81
222 223 6.148480 CAGCTAGCAGTCAACAATATAATCCC 59.852 42.308 18.83 0.00 0.00 3.85
223 224 6.931281 TCAGCTAGCAGTCAACAATATAATCC 59.069 38.462 18.83 0.00 0.00 3.01
224 225 7.953158 TCAGCTAGCAGTCAACAATATAATC 57.047 36.000 18.83 0.00 0.00 1.75
225 226 8.915057 AATCAGCTAGCAGTCAACAATATAAT 57.085 30.769 18.83 0.00 0.00 1.28
226 227 8.206867 AGAATCAGCTAGCAGTCAACAATATAA 58.793 33.333 18.83 0.00 0.00 0.98
227 228 7.730084 AGAATCAGCTAGCAGTCAACAATATA 58.270 34.615 18.83 0.00 0.00 0.86
228 229 6.590068 AGAATCAGCTAGCAGTCAACAATAT 58.410 36.000 18.83 0.00 0.00 1.28
229 230 5.982356 AGAATCAGCTAGCAGTCAACAATA 58.018 37.500 18.83 0.00 0.00 1.90
230 231 4.841422 AGAATCAGCTAGCAGTCAACAAT 58.159 39.130 18.83 0.00 0.00 2.71
231 232 4.277515 AGAATCAGCTAGCAGTCAACAA 57.722 40.909 18.83 0.00 0.00 2.83
232 233 3.969287 AGAATCAGCTAGCAGTCAACA 57.031 42.857 18.83 0.00 0.00 3.33
233 234 5.004922 AGTAGAATCAGCTAGCAGTCAAC 57.995 43.478 18.83 6.06 0.00 3.18
234 235 6.152831 TGTTAGTAGAATCAGCTAGCAGTCAA 59.847 38.462 18.83 0.00 0.00 3.18
235 236 5.652452 TGTTAGTAGAATCAGCTAGCAGTCA 59.348 40.000 18.83 0.00 0.00 3.41
236 237 6.137794 TGTTAGTAGAATCAGCTAGCAGTC 57.862 41.667 18.83 5.91 0.00 3.51
237 238 6.322456 TGATGTTAGTAGAATCAGCTAGCAGT 59.678 38.462 18.83 0.00 31.46 4.40
238 239 6.743110 TGATGTTAGTAGAATCAGCTAGCAG 58.257 40.000 18.83 9.54 31.46 4.24
239 240 6.715347 TGATGTTAGTAGAATCAGCTAGCA 57.285 37.500 18.83 0.00 32.24 3.49
240 241 7.307101 GCTTTGATGTTAGTAGAATCAGCTAGC 60.307 40.741 6.62 6.62 32.23 3.42
241 242 7.170658 GGCTTTGATGTTAGTAGAATCAGCTAG 59.829 40.741 0.00 0.00 32.23 3.42
242 243 6.986817 GGCTTTGATGTTAGTAGAATCAGCTA 59.013 38.462 0.00 0.00 32.23 3.32
243 244 5.819901 GGCTTTGATGTTAGTAGAATCAGCT 59.180 40.000 0.00 0.00 32.23 4.24
244 245 5.819901 AGGCTTTGATGTTAGTAGAATCAGC 59.180 40.000 0.00 0.00 32.23 4.26
245 246 7.044181 TGAGGCTTTGATGTTAGTAGAATCAG 58.956 38.462 0.00 0.00 32.23 2.90
246 247 6.946340 TGAGGCTTTGATGTTAGTAGAATCA 58.054 36.000 0.00 0.00 0.00 2.57
247 248 6.481644 CCTGAGGCTTTGATGTTAGTAGAATC 59.518 42.308 0.00 0.00 0.00 2.52
248 249 6.352516 CCTGAGGCTTTGATGTTAGTAGAAT 58.647 40.000 0.00 0.00 0.00 2.40
249 250 5.338381 CCCTGAGGCTTTGATGTTAGTAGAA 60.338 44.000 0.00 0.00 0.00 2.10
250 251 4.162320 CCCTGAGGCTTTGATGTTAGTAGA 59.838 45.833 0.00 0.00 0.00 2.59
251 252 4.080863 ACCCTGAGGCTTTGATGTTAGTAG 60.081 45.833 0.00 0.00 36.11 2.57
252 253 3.844211 ACCCTGAGGCTTTGATGTTAGTA 59.156 43.478 0.00 0.00 36.11 1.82
253 254 2.644798 ACCCTGAGGCTTTGATGTTAGT 59.355 45.455 0.00 0.00 36.11 2.24
254 255 3.274288 GACCCTGAGGCTTTGATGTTAG 58.726 50.000 0.00 0.00 36.11 2.34
255 256 2.642311 TGACCCTGAGGCTTTGATGTTA 59.358 45.455 0.00 0.00 36.11 2.41
256 257 1.425066 TGACCCTGAGGCTTTGATGTT 59.575 47.619 0.00 0.00 36.11 2.71
257 258 1.004044 CTGACCCTGAGGCTTTGATGT 59.996 52.381 0.00 0.00 36.11 3.06
258 259 1.004044 ACTGACCCTGAGGCTTTGATG 59.996 52.381 0.00 0.00 36.11 3.07
259 260 1.004044 CACTGACCCTGAGGCTTTGAT 59.996 52.381 0.00 0.00 36.11 2.57
260 261 0.397941 CACTGACCCTGAGGCTTTGA 59.602 55.000 0.00 0.00 36.11 2.69
261 262 0.109342 ACACTGACCCTGAGGCTTTG 59.891 55.000 0.00 0.00 36.11 2.77
262 263 0.846693 AACACTGACCCTGAGGCTTT 59.153 50.000 0.00 0.00 36.11 3.51
263 264 0.398318 GAACACTGACCCTGAGGCTT 59.602 55.000 0.00 0.00 36.11 4.35
264 265 0.764369 TGAACACTGACCCTGAGGCT 60.764 55.000 0.00 0.00 36.11 4.58
265 266 0.321122 CTGAACACTGACCCTGAGGC 60.321 60.000 0.00 0.00 36.11 4.70
266 267 1.051812 ACTGAACACTGACCCTGAGG 58.948 55.000 0.00 0.00 40.04 3.86
267 268 5.452496 CCATATACTGAACACTGACCCTGAG 60.452 48.000 0.00 0.00 0.00 3.35
268 269 4.405680 CCATATACTGAACACTGACCCTGA 59.594 45.833 0.00 0.00 0.00 3.86
269 270 4.405680 TCCATATACTGAACACTGACCCTG 59.594 45.833 0.00 0.00 0.00 4.45
270 271 4.620723 TCCATATACTGAACACTGACCCT 58.379 43.478 0.00 0.00 0.00 4.34
271 272 5.552870 ATCCATATACTGAACACTGACCC 57.447 43.478 0.00 0.00 0.00 4.46
272 273 9.640963 GTATTATCCATATACTGAACACTGACC 57.359 37.037 0.00 0.00 0.00 4.02
289 290 9.909644 GACGCTTTAATCTTAGAGTATTATCCA 57.090 33.333 0.00 0.00 0.00 3.41
290 291 9.909644 TGACGCTTTAATCTTAGAGTATTATCC 57.090 33.333 0.00 0.00 0.00 2.59
292 293 9.915629 CCTGACGCTTTAATCTTAGAGTATTAT 57.084 33.333 0.00 0.00 0.00 1.28
293 294 8.358148 CCCTGACGCTTTAATCTTAGAGTATTA 58.642 37.037 0.00 0.00 0.00 0.98
294 295 7.147707 ACCCTGACGCTTTAATCTTAGAGTATT 60.148 37.037 0.00 0.00 0.00 1.89
295 296 6.324254 ACCCTGACGCTTTAATCTTAGAGTAT 59.676 38.462 0.00 0.00 0.00 2.12
296 297 5.655532 ACCCTGACGCTTTAATCTTAGAGTA 59.344 40.000 0.00 0.00 0.00 2.59
297 298 4.466726 ACCCTGACGCTTTAATCTTAGAGT 59.533 41.667 0.00 0.00 0.00 3.24
298 299 5.012328 ACCCTGACGCTTTAATCTTAGAG 57.988 43.478 0.00 0.00 0.00 2.43
299 300 6.534475 TTACCCTGACGCTTTAATCTTAGA 57.466 37.500 0.00 0.00 0.00 2.10
300 301 7.787725 AATTACCCTGACGCTTTAATCTTAG 57.212 36.000 0.00 0.00 0.00 2.18
310 311 3.875865 GGGAAATTACCCTGACGCT 57.124 52.632 0.00 0.00 45.90 5.07
323 326 6.487331 ACATTTACTATTGACGTGTTGGGAAA 59.513 34.615 0.00 0.00 0.00 3.13
326 329 5.873179 ACATTTACTATTGACGTGTTGGG 57.127 39.130 0.00 0.00 0.00 4.12
330 333 7.380536 TCCAGTTACATTTACTATTGACGTGT 58.619 34.615 0.00 0.00 0.00 4.49
358 361 9.979270 CAACTGAAGAAATATACAGCAGTTTAG 57.021 33.333 0.00 0.00 41.53 1.85
360 363 7.448469 ACCAACTGAAGAAATATACAGCAGTTT 59.552 33.333 0.00 0.00 41.53 2.66
421 428 7.379750 AGTTGAAGTAGCTAGGTGAAAGTAAG 58.620 38.462 4.27 0.00 0.00 2.34
479 486 6.633500 TGGTGAAGAAATGTACAGGAAAAG 57.367 37.500 0.33 0.00 0.00 2.27
518 525 4.394300 CCTGTTTCATTCAGATGTGGAGAC 59.606 45.833 0.00 0.00 35.20 3.36
525 532 3.067742 GGATGCCCTGTTTCATTCAGATG 59.932 47.826 0.00 0.00 35.20 2.90
608 727 1.717032 GAGGGGGCAAGAAAAAGGTT 58.283 50.000 0.00 0.00 0.00 3.50
609 728 0.178932 GGAGGGGGCAAGAAAAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
621 740 0.257039 CAATGACTGAAGGGAGGGGG 59.743 60.000 0.00 0.00 0.00 5.40
623 742 1.289160 TCCAATGACTGAAGGGAGGG 58.711 55.000 0.00 0.00 0.00 4.30
626 745 2.041620 CCCTTTCCAATGACTGAAGGGA 59.958 50.000 12.97 0.00 39.40 4.20
636 755 5.452356 GCAGTCAATAATCCCCTTTCCAATG 60.452 44.000 0.00 0.00 0.00 2.82
646 765 1.952296 CAGCCAGCAGTCAATAATCCC 59.048 52.381 0.00 0.00 0.00 3.85
662 781 8.893727 ACAATACAACAAGTAGAATAATCAGCC 58.106 33.333 0.00 0.00 35.85 4.85
780 933 8.689061 TGGTTTAAGCTTATCTACTGAATACGA 58.311 33.333 7.08 0.00 0.00 3.43
798 951 6.617879 ACGCTTTAGCCTTTAATGGTTTAAG 58.382 36.000 14.63 14.63 37.91 1.85
806 959 3.279434 CCCTGACGCTTTAGCCTTTAAT 58.721 45.455 0.00 0.00 37.91 1.40
1024 1252 1.207089 CATGTGTCCCACGTAGGATGT 59.793 52.381 5.87 0.00 41.22 3.06
1323 1554 1.144298 TCATGAGCATGGGAGGGATTG 59.856 52.381 10.31 0.00 39.24 2.67
1435 1666 3.313249 CGAACATTGCTGCTATGATCCAA 59.687 43.478 26.45 0.00 0.00 3.53
1436 1667 2.874086 CGAACATTGCTGCTATGATCCA 59.126 45.455 26.45 0.00 0.00 3.41
1681 1918 4.260620 CCATATCTTTTTACTGAACCCGCG 60.261 45.833 0.00 0.00 0.00 6.46
1785 2022 1.636340 CGCGTCCTTAGCATTTCCG 59.364 57.895 0.00 0.00 34.19 4.30
1794 2031 2.126228 CGGTGAAGCGCGTCCTTA 60.126 61.111 20.62 0.00 0.00 2.69
1839 2076 7.557358 ACATCATCCATTACAAGCAATGTCTTA 59.443 33.333 0.00 0.00 42.70 2.10
2065 2302 8.480853 CGGAGATAATGAAAGAGATTTAACGTC 58.519 37.037 0.00 0.00 0.00 4.34
2140 2394 5.912149 ATGGCTCATATTAACTTGGGAGA 57.088 39.130 0.00 0.00 0.00 3.71
2201 2601 2.214376 TTCCCTGTTTAGCACCATGG 57.786 50.000 11.19 11.19 0.00 3.66
2216 2616 5.852282 ATTAGTGTTGTGGCATATTTCCC 57.148 39.130 0.00 0.00 0.00 3.97
2262 2712 5.607119 TTCCTCAAGCTCGATTAAACAAC 57.393 39.130 0.00 0.00 0.00 3.32
2327 2777 3.130516 ACATACGACCAATGTCTCGTCAT 59.869 43.478 6.50 0.00 42.07 3.06
2339 2789 3.358118 TCACTACATGGACATACGACCA 58.642 45.455 0.00 0.00 41.30 4.02
2348 2798 7.855904 CACAAAAAGTTAACTCACTACATGGAC 59.144 37.037 8.95 0.00 0.00 4.02
2350 2800 7.925993 TCACAAAAAGTTAACTCACTACATGG 58.074 34.615 8.95 0.00 0.00 3.66
2367 2818 9.405587 GAAAACGAGATTGGATAATCACAAAAA 57.594 29.630 0.00 0.00 44.14 1.94
2376 2827 8.673711 CATAAGTTGGAAAACGAGATTGGATAA 58.326 33.333 0.00 0.00 0.00 1.75
2413 2865 4.025396 CACTGTTGAGTAACTGAGCACTTG 60.025 45.833 0.00 0.00 38.61 3.16
2424 2876 9.729023 CAAAATTGTTATGACACTGTTGAGTAA 57.271 29.630 5.27 0.00 36.34 2.24
2449 2970 1.145945 TGTATTTGCAGGGGTTCACCA 59.854 47.619 0.00 0.00 42.91 4.17
2472 2993 5.818857 GCAGGGGTTCGTGTTATATTCTTTA 59.181 40.000 0.00 0.00 0.00 1.85
2537 3060 8.644318 ACTACGCCAGACATTAATTACTAAAG 57.356 34.615 0.00 0.00 0.00 1.85
2553 3080 6.649141 TCCTAAAATGCATAATACTACGCCAG 59.351 38.462 0.00 0.00 0.00 4.85
2634 3304 5.182950 ACATTACGAAGATTTGTGCAATGGA 59.817 36.000 10.86 0.00 30.22 3.41
2699 3700 9.140286 GCCAAAAAGAAATGTTATTACTTCCTC 57.860 33.333 0.00 0.00 0.00 3.71
2700 3701 8.646900 TGCCAAAAAGAAATGTTATTACTTCCT 58.353 29.630 0.00 0.00 0.00 3.36
2701 3702 8.825667 TGCCAAAAAGAAATGTTATTACTTCC 57.174 30.769 0.00 0.00 0.00 3.46
2755 3767 8.783833 ATGTATCAAGGTATGATTGACTATGC 57.216 34.615 0.00 0.00 46.85 3.14
2794 3818 8.972349 GCCCAGTTTTACGTCTTAACTATATAC 58.028 37.037 0.00 0.00 31.30 1.47
2800 3824 3.062042 CGCCCAGTTTTACGTCTTAACT 58.938 45.455 0.00 0.00 32.60 2.24
2808 3844 0.725117 CTAAGGCGCCCAGTTTTACG 59.275 55.000 26.15 5.28 0.00 3.18
2818 3854 0.250081 CCAAGATCCTCTAAGGCGCC 60.250 60.000 21.89 21.89 34.61 6.53
2932 3968 7.922505 TTTTTGTACAATTTTCAGTCCGATG 57.077 32.000 9.56 0.00 0.00 3.84
3021 4057 2.116983 AACCTGCTGCCAGTCACGAT 62.117 55.000 0.00 0.00 37.38 3.73
3183 4220 3.006110 CCACATTGCAACAACTTCATCCT 59.994 43.478 0.00 0.00 0.00 3.24
3507 4544 1.527034 TGTTCTCACTGATTGCTGCC 58.473 50.000 0.00 0.00 0.00 4.85
3623 4660 3.505293 TGATGCAACGATTCAACCAATGA 59.495 39.130 0.00 0.00 35.85 2.57
3656 4693 7.796054 ACATTTACTAGTGCAAGATACCTCAT 58.204 34.615 5.39 0.00 0.00 2.90
4243 5933 5.359009 AGCCAGGTCATCAATCAATAAAGTG 59.641 40.000 0.00 0.00 0.00 3.16
4410 6103 3.451894 CCACCATTCCGCCCAAGC 61.452 66.667 0.00 0.00 0.00 4.01
5035 6732 6.455360 AAGAGTGCTCAAACAAATCAAGAA 57.545 33.333 1.82 0.00 0.00 2.52
5160 7085 6.709397 TGCATGGCAAGAAAATTACAAAATGA 59.291 30.769 0.00 0.00 34.76 2.57
5446 7372 5.248477 AGCCTCAATAAACCTCTGAGTTACA 59.752 40.000 3.66 0.00 35.78 2.41
5886 7834 5.066634 TCCACTTTCGAGTCTGAGATATCAC 59.933 44.000 5.32 0.00 0.00 3.06
6020 7974 2.029200 TGATTGTGCACCGCAAATCATT 60.029 40.909 20.45 0.00 41.47 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.