Multiple sequence alignment - TraesCS7D01G544200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G544200 chr7D 100.000 4259 0 0 1 4259 632035472 632039730 0.000000e+00 7866.0
1 TraesCS7D01G544200 chr7D 87.508 3098 334 23 4 3062 632098721 632101804 0.000000e+00 3528.0
2 TraesCS7D01G544200 chr7D 87.525 1972 227 18 4 1967 632143391 632145351 0.000000e+00 2261.0
3 TraesCS7D01G544200 chr7D 86.660 1919 243 10 4 1917 632081453 632083363 0.000000e+00 2113.0
4 TraesCS7D01G544200 chr7D 82.892 415 67 4 2641 3053 555054025 555054437 1.870000e-98 370.0
5 TraesCS7D01G544200 chr7D 89.669 242 23 2 3084 3324 632101795 632102035 1.490000e-79 307.0
6 TraesCS7D01G544200 chr7D 76.215 391 53 33 3460 3835 632103114 632103479 2.040000e-38 171.0
7 TraesCS7D01G544200 chr7D 87.857 140 13 3 3937 4072 632048587 632048726 1.230000e-35 161.0
8 TraesCS7D01G544200 chr7D 88.550 131 14 1 3943 4072 632049007 632049137 1.590000e-34 158.0
9 TraesCS7D01G544200 chr7D 77.778 117 17 5 4143 4259 632103816 632103923 3.560000e-06 63.9
10 TraesCS7D01G544200 chr7A 85.095 3113 392 37 4 3060 736006233 736003137 0.000000e+00 3112.0
11 TraesCS7D01G544200 chr7A 85.294 2176 264 30 12 2163 735962818 735964961 0.000000e+00 2194.0
12 TraesCS7D01G544200 chr7A 86.859 1971 242 16 4 1967 735843938 735841978 0.000000e+00 2189.0
13 TraesCS7D01G544200 chr7A 85.621 1843 201 32 1253 3060 736000367 735998554 0.000000e+00 1877.0
14 TraesCS7D01G544200 chr7A 85.618 1780 231 19 1148 2907 735929369 735931143 0.000000e+00 1845.0
15 TraesCS7D01G544200 chr7A 87.097 155 11 4 3448 3599 735664595 735664447 2.630000e-37 167.0
16 TraesCS7D01G544200 chr7A 89.076 119 7 2 4071 4183 735826857 735826739 4.440000e-30 143.0
17 TraesCS7D01G544200 chr7A 88.608 79 7 1 3970 4048 735645864 735645788 1.260000e-15 95.3
18 TraesCS7D01G544200 chr7A 90.196 51 0 4 3619 3664 735664407 735664357 1.280000e-05 62.1
19 TraesCS7D01G544200 chr7A 100.000 28 0 0 4232 4259 735816314 735816287 8.000000e-03 52.8
20 TraesCS7D01G544200 chr7B 85.499 2524 321 24 4 2491 744250131 744252645 0.000000e+00 2591.0
21 TraesCS7D01G544200 chr7B 84.435 2602 329 33 4 2543 744271565 744274152 0.000000e+00 2492.0
22 TraesCS7D01G544200 chr7B 86.006 2008 255 16 4 1999 745232441 745234434 0.000000e+00 2128.0
23 TraesCS7D01G544200 chr7B 88.040 1806 157 27 1561 3323 744067605 744069394 0.000000e+00 2084.0
24 TraesCS7D01G544200 chr7B 85.772 1968 269 10 4 1967 743652850 743654810 0.000000e+00 2073.0
25 TraesCS7D01G544200 chr7B 84.479 1978 248 33 752 2701 743835248 743833302 0.000000e+00 1897.0
26 TraesCS7D01G544200 chr7B 85.667 1514 168 16 1041 2543 743995424 743993949 0.000000e+00 1548.0
27 TraesCS7D01G544200 chr7B 80.651 1044 167 21 2030 3045 745243098 745244134 0.000000e+00 776.0
28 TraesCS7D01G544200 chr7B 77.273 682 105 35 2594 3250 743717475 743718131 5.240000e-94 355.0
29 TraesCS7D01G544200 chr7B 82.143 364 30 15 3390 3744 744069759 744070096 3.240000e-71 279.0
30 TraesCS7D01G544200 chr7B 87.500 136 11 5 3942 4072 744274655 744274789 7.380000e-33 152.0
31 TraesCS7D01G544200 chr7B 89.831 118 12 0 3937 4054 744325414 744325297 7.380000e-33 152.0
32 TraesCS7D01G544200 chr7B 91.489 94 8 0 3977 4070 744075617 744075710 3.460000e-26 130.0
33 TraesCS7D01G544200 chr7B 90.323 93 7 1 3946 4038 743852262 743852172 2.080000e-23 121.0
34 TraesCS7D01G544200 chr7B 89.247 93 8 1 3946 4038 744191262 744191352 9.680000e-22 115.0
35 TraesCS7D01G544200 chr7B 100.000 28 0 0 4232 4259 744019212 744019185 8.000000e-03 52.8
36 TraesCS7D01G544200 chr7B 96.774 31 1 0 4229 4259 744276116 744276146 8.000000e-03 52.8
37 TraesCS7D01G544200 chrUn 92.485 1344 88 3 2030 3373 372683021 372684351 0.000000e+00 1910.0
38 TraesCS7D01G544200 chrUn 92.289 817 63 0 2030 2846 329376170 329376986 0.000000e+00 1160.0
39 TraesCS7D01G544200 chrUn 93.808 759 37 2 2615 3373 467225578 467224830 0.000000e+00 1133.0
40 TraesCS7D01G544200 chrUn 93.304 672 35 2 2702 3373 448316046 448315385 0.000000e+00 983.0
41 TraesCS7D01G544200 chrUn 94.094 491 19 2 2883 3373 337843645 337843165 0.000000e+00 737.0
42 TraesCS7D01G544200 chr3B 92.411 1344 90 3 2030 3373 778538644 778539975 0.000000e+00 1906.0
43 TraesCS7D01G544200 chr3B 89.916 119 10 2 3937 4054 788253442 788253325 7.380000e-33 152.0
44 TraesCS7D01G544200 chr6B 85.000 140 9 9 3894 4030 4320538 4320668 9.610000e-27 132.0
45 TraesCS7D01G544200 chr1B 77.848 158 23 8 3204 3357 683290466 683290615 2.110000e-13 87.9
46 TraesCS7D01G544200 chr1B 77.848 158 23 8 3204 3357 683306151 683306300 2.110000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G544200 chr7D 632035472 632039730 4258 False 7866.000000 7866 100.000000 1 4259 1 chr7D.!!$F2 4258
1 TraesCS7D01G544200 chr7D 632143391 632145351 1960 False 2261.000000 2261 87.525000 4 1967 1 chr7D.!!$F4 1963
2 TraesCS7D01G544200 chr7D 632081453 632083363 1910 False 2113.000000 2113 86.660000 4 1917 1 chr7D.!!$F3 1913
3 TraesCS7D01G544200 chr7D 632098721 632103923 5202 False 1017.475000 3528 82.792500 4 4259 4 chr7D.!!$F6 4255
4 TraesCS7D01G544200 chr7A 735998554 736006233 7679 True 2494.500000 3112 85.358000 4 3060 2 chr7A.!!$R6 3056
5 TraesCS7D01G544200 chr7A 735962818 735964961 2143 False 2194.000000 2194 85.294000 12 2163 1 chr7A.!!$F2 2151
6 TraesCS7D01G544200 chr7A 735841978 735843938 1960 True 2189.000000 2189 86.859000 4 1967 1 chr7A.!!$R4 1963
7 TraesCS7D01G544200 chr7A 735929369 735931143 1774 False 1845.000000 1845 85.618000 1148 2907 1 chr7A.!!$F1 1759
8 TraesCS7D01G544200 chr7B 744250131 744252645 2514 False 2591.000000 2591 85.499000 4 2491 1 chr7B.!!$F5 2487
9 TraesCS7D01G544200 chr7B 745232441 745234434 1993 False 2128.000000 2128 86.006000 4 1999 1 chr7B.!!$F6 1995
10 TraesCS7D01G544200 chr7B 743652850 743654810 1960 False 2073.000000 2073 85.772000 4 1967 1 chr7B.!!$F1 1963
11 TraesCS7D01G544200 chr7B 743833302 743835248 1946 True 1897.000000 1897 84.479000 752 2701 1 chr7B.!!$R1 1949
12 TraesCS7D01G544200 chr7B 743993949 743995424 1475 True 1548.000000 1548 85.667000 1041 2543 1 chr7B.!!$R3 1502
13 TraesCS7D01G544200 chr7B 744067605 744070096 2491 False 1181.500000 2084 85.091500 1561 3744 2 chr7B.!!$F8 2183
14 TraesCS7D01G544200 chr7B 744271565 744276146 4581 False 898.933333 2492 89.569667 4 4259 3 chr7B.!!$F9 4255
15 TraesCS7D01G544200 chr7B 745243098 745244134 1036 False 776.000000 776 80.651000 2030 3045 1 chr7B.!!$F7 1015
16 TraesCS7D01G544200 chr7B 743717475 743718131 656 False 355.000000 355 77.273000 2594 3250 1 chr7B.!!$F2 656
17 TraesCS7D01G544200 chrUn 372683021 372684351 1330 False 1910.000000 1910 92.485000 2030 3373 1 chrUn.!!$F2 1343
18 TraesCS7D01G544200 chrUn 329376170 329376986 816 False 1160.000000 1160 92.289000 2030 2846 1 chrUn.!!$F1 816
19 TraesCS7D01G544200 chrUn 467224830 467225578 748 True 1133.000000 1133 93.808000 2615 3373 1 chrUn.!!$R3 758
20 TraesCS7D01G544200 chrUn 448315385 448316046 661 True 983.000000 983 93.304000 2702 3373 1 chrUn.!!$R2 671
21 TraesCS7D01G544200 chr3B 778538644 778539975 1331 False 1906.000000 1906 92.411000 2030 3373 1 chr3B.!!$F1 1343

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 953 0.179124 AGGAAGAGCAGCGACGAATC 60.179 55.0 0.00 0.0 0.00 2.52 F
1265 1270 0.034574 TTCGACATGGTGGAATGGGG 60.035 55.0 0.00 0.0 31.46 4.96 F
2244 6944 0.684479 TGCTGTCGCTCTGAGGGTAT 60.684 55.0 19.51 0.0 36.97 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 7003 0.179161 CCTGAGTTACCAGCGAGACG 60.179 60.0 0.00 0.0 32.97 4.18 R
2558 7264 0.614697 TCTCCAAGAGATCACCGCCA 60.615 55.0 0.00 0.0 33.35 5.69 R
3604 9978 0.033796 ATAGGCCTGCACTGCATTGT 60.034 50.0 17.99 0.0 38.13 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.146342 AGTCTGGATCAAGTTGTTGCG 58.854 47.619 2.11 0.00 33.23 4.85
58 59 5.757850 AAGCGAAGGATTTATTCATGGAC 57.242 39.130 0.00 0.00 0.00 4.02
65 66 7.383572 CGAAGGATTTATTCATGGACACTCTAG 59.616 40.741 0.00 0.00 0.00 2.43
67 68 8.783660 AGGATTTATTCATGGACACTCTAGTA 57.216 34.615 0.00 0.00 0.00 1.82
117 118 7.133483 ACTACAAGGAGTTGGTATCTAGGAAT 58.867 38.462 0.00 0.00 38.07 3.01
120 121 6.674419 ACAAGGAGTTGGTATCTAGGAATCTT 59.326 38.462 0.00 0.00 38.07 2.40
123 124 9.453830 AAGGAGTTGGTATCTAGGAATCTTATT 57.546 33.333 0.00 0.00 0.00 1.40
195 196 2.357323 TGTTGTTCGCTCATTTGCTCAA 59.643 40.909 0.00 0.00 0.00 3.02
228 232 4.057406 AGATGAAGCACTCATAGCTCAC 57.943 45.455 0.00 0.00 45.23 3.51
232 236 1.177401 AGCACTCATAGCTCACGACA 58.823 50.000 0.00 0.00 38.01 4.35
247 251 5.051173 GCTCACGACAGAGACAATGATATTG 60.051 44.000 8.13 0.28 37.87 1.90
250 254 7.543756 TCACGACAGAGACAATGATATTGTTA 58.456 34.615 8.42 0.00 31.96 2.41
258 262 9.593134 AGAGACAATGATATTGTTAGTGAACTC 57.407 33.333 8.42 8.30 36.45 3.01
296 300 5.962433 TCTTCGGTTGTCCATAGAAACTAG 58.038 41.667 0.00 0.00 0.00 2.57
303 307 4.215908 TGTCCATAGAAACTAGCCGATCT 58.784 43.478 0.00 0.00 0.00 2.75
321 325 5.233902 CCGATCTCAATCAGATGAACTTGAC 59.766 44.000 0.00 0.00 42.48 3.18
335 339 5.470368 TGAACTTGACTGGAAATCTCTACG 58.530 41.667 0.00 0.00 0.00 3.51
360 365 4.378356 GCGCAACAATCAGTGAGAACATTA 60.378 41.667 0.30 0.00 0.00 1.90
378 383 8.207545 AGAACATTAATCTCAACTACCCAGATC 58.792 37.037 0.00 0.00 0.00 2.75
414 419 7.353414 TGGTGATTCATTGGTTACTTTTTCA 57.647 32.000 0.00 0.00 0.00 2.69
496 501 3.327757 TCAACTCAAGCACCTGAGGTATT 59.672 43.478 2.59 0.00 41.57 1.89
498 503 3.679389 ACTCAAGCACCTGAGGTATTTG 58.321 45.455 16.74 16.74 46.02 2.32
500 505 2.642311 TCAAGCACCTGAGGTATTTGGA 59.358 45.455 20.41 7.49 32.11 3.53
501 506 3.012518 CAAGCACCTGAGGTATTTGGAG 58.987 50.000 2.59 0.00 32.11 3.86
505 510 3.370527 GCACCTGAGGTATTTGGAGCTAA 60.371 47.826 2.59 0.00 32.11 3.09
509 514 6.708054 CACCTGAGGTATTTGGAGCTAATAAG 59.292 42.308 2.59 0.00 32.11 1.73
511 516 7.567622 ACCTGAGGTATTTGGAGCTAATAAGTA 59.432 37.037 0.07 0.00 32.11 2.24
552 557 4.142447 CCAGAGAACATTGGCAAGATGAAG 60.142 45.833 5.96 0.00 0.00 3.02
568 573 7.975616 GCAAGATGAAGTTATTGCAATTCCTTA 59.024 33.333 18.75 9.03 45.66 2.69
569 574 9.512435 CAAGATGAAGTTATTGCAATTCCTTAG 57.488 33.333 18.75 3.77 0.00 2.18
570 575 9.466497 AAGATGAAGTTATTGCAATTCCTTAGA 57.534 29.630 18.75 9.96 0.00 2.10
576 581 8.045176 AGTTATTGCAATTCCTTAGACTTGAC 57.955 34.615 18.75 0.00 35.28 3.18
588 593 7.458397 TCCTTAGACTTGACCAATGTGTAAAT 58.542 34.615 0.00 0.00 0.00 1.40
641 646 1.246737 GGCCAGCTGAGGTTTCTTGG 61.247 60.000 17.39 0.00 0.00 3.61
642 647 1.246737 GCCAGCTGAGGTTTCTTGGG 61.247 60.000 17.39 0.00 0.00 4.12
649 654 0.405973 GAGGTTTCTTGGGCTTCCCT 59.594 55.000 3.27 0.00 45.70 4.20
651 656 1.354705 AGGTTTCTTGGGCTTCCCTAC 59.645 52.381 3.27 0.00 45.70 3.18
661 666 2.504175 GGGCTTCCCTACACAAGTATGA 59.496 50.000 0.00 0.00 41.34 2.15
676 681 5.162925 ACAAGTATGATACCTAGAGGGCTCT 60.163 44.000 0.00 0.00 43.40 4.09
677 682 5.608798 AGTATGATACCTAGAGGGCTCTT 57.391 43.478 0.00 0.00 40.93 2.85
679 684 6.386284 AGTATGATACCTAGAGGGCTCTTTT 58.614 40.000 0.00 0.00 40.93 2.27
689 694 2.810852 GAGGGCTCTTTTGTCTGACAAG 59.189 50.000 21.13 12.39 39.53 3.16
691 696 2.550180 GGGCTCTTTTGTCTGACAAGTC 59.450 50.000 21.13 12.36 39.53 3.01
706 711 4.054671 GACAAGTCTGAGGAAACTGACTG 58.945 47.826 0.00 0.00 44.18 3.51
716 721 2.143925 GAAACTGACTGGGTTTCGAGG 58.856 52.381 0.00 0.00 41.61 4.63
756 761 0.818040 GCAGTTTGGACGAGTTGGGT 60.818 55.000 0.00 0.00 0.00 4.51
775 780 3.403968 GGTTCTCTTTCCCAACTCAGAC 58.596 50.000 0.00 0.00 0.00 3.51
780 785 4.282195 TCTCTTTCCCAACTCAGACTTCTC 59.718 45.833 0.00 0.00 0.00 2.87
783 788 2.964209 TCCCAACTCAGACTTCTCAGT 58.036 47.619 0.00 0.00 35.17 3.41
787 792 4.991687 CCCAACTCAGACTTCTCAGTTTAC 59.008 45.833 0.00 0.00 31.22 2.01
790 795 6.708054 CCAACTCAGACTTCTCAGTTTACATT 59.292 38.462 0.00 0.00 31.22 2.71
837 842 2.425143 TTGCTGCTAATGCTAGGCTT 57.575 45.000 0.00 0.00 40.48 4.35
839 844 0.310232 GCTGCTAATGCTAGGCTTGC 59.690 55.000 14.14 14.14 40.48 4.01
849 854 2.238144 TGCTAGGCTTGCTGAGAAGATT 59.762 45.455 20.97 0.00 0.00 2.40
857 862 5.587844 GGCTTGCTGAGAAGATTCATCTTAA 59.412 40.000 1.90 0.00 46.47 1.85
859 864 7.133513 GCTTGCTGAGAAGATTCATCTTAATG 58.866 38.462 1.90 0.00 46.47 1.90
915 920 4.177537 TGATGGGTTGGTCAAAGAGAAA 57.822 40.909 0.00 0.00 0.00 2.52
941 946 4.810730 CTCTGAGGAAGAGCAGCG 57.189 61.111 0.00 0.00 45.93 5.18
948 953 0.179124 AGGAAGAGCAGCGACGAATC 60.179 55.000 0.00 0.00 0.00 2.52
964 969 3.679980 ACGAATCGAGAAGGTGTTTGATG 59.320 43.478 10.55 0.00 0.00 3.07
1031 1036 2.424842 TTTGGCCAGCAACTCCCGAT 62.425 55.000 5.11 0.00 0.00 4.18
1039 1044 0.101219 GCAACTCCCGATTTGGATGC 59.899 55.000 0.00 0.00 42.00 3.91
1044 1049 0.617935 TCCCGATTTGGATGCTGTCA 59.382 50.000 0.00 0.00 42.00 3.58
1050 1055 3.688272 GATTTGGATGCTGTCAACATCG 58.312 45.455 9.55 0.00 43.98 3.84
1088 1093 9.244799 CAACAACTTGAAGTTTATAGGGTTTTC 57.755 33.333 8.03 0.00 36.03 2.29
1125 1130 3.226777 CACACAACTTCCCAATGGGTTA 58.773 45.455 19.28 6.96 44.74 2.85
1141 1146 1.689258 GGTTATGCCAGCTCCCCAATT 60.689 52.381 0.00 0.00 37.17 2.32
1235 1240 5.691754 CAGCTTCATTTCCAAGGTTAAACAC 59.308 40.000 0.00 0.00 28.96 3.32
1265 1270 0.034574 TTCGACATGGTGGAATGGGG 60.035 55.000 0.00 0.00 31.46 4.96
1386 6011 4.992319 TCCAATGCAAGCTCTTTGAAAATG 59.008 37.500 0.00 0.00 39.21 2.32
1452 6077 4.900635 TCCTTCTGTTGTTGAGCTTTTC 57.099 40.909 0.00 0.00 0.00 2.29
1516 6141 4.159135 CCAATCTGCAGAAGCTTACCATTT 59.841 41.667 22.50 3.05 42.74 2.32
1573 6198 1.587043 TTCACTCGAGAGGCTGGTCG 61.587 60.000 21.68 9.12 37.54 4.79
1714 6350 1.985159 AGTGGGACAAGTTCAGCCATA 59.015 47.619 0.00 0.00 44.16 2.74
1842 6496 8.554490 ACTCTACCATATTTGAAGGTACAGAT 57.446 34.615 0.00 0.00 36.87 2.90
1961 6621 2.533266 ATACTGCATGATGACCGGAC 57.467 50.000 9.46 1.07 0.00 4.79
2064 6762 5.415701 TCTTTCCATGCAGAAACCTTATCAC 59.584 40.000 0.00 0.00 32.45 3.06
2084 6782 2.092753 ACCTTCTATGGTGGATGCACAG 60.093 50.000 19.67 8.20 39.17 3.66
2106 6806 5.641209 CAGGGATTTGACTCTCTGTACAAAG 59.359 44.000 0.00 0.00 38.68 2.77
2123 6823 6.984474 TGTACAAAGTGAGAAGAAGTACCTTG 59.016 38.462 0.00 0.00 31.80 3.61
2244 6944 0.684479 TGCTGTCGCTCTGAGGGTAT 60.684 55.000 19.51 0.00 36.97 2.73
2264 6964 2.381752 TGAACTCTGGTGACTCTCCA 57.618 50.000 0.00 0.00 0.00 3.86
2303 7003 3.476552 TCTTGGTGTGAATGAGTCAACC 58.523 45.455 0.00 0.00 38.23 3.77
2342 7042 2.884639 GGTGTTTGTTGAGGCTATGTGT 59.115 45.455 0.00 0.00 0.00 3.72
2454 7154 3.403968 TGTTGTGGCGTTGTACATACAT 58.596 40.909 0.00 0.00 35.89 2.29
2543 7246 7.154656 CCATCGTTGATTCAGATATGAGGTTA 58.845 38.462 0.00 0.00 0.00 2.85
2558 7264 6.994421 ATGAGGTTAATGGAGTTTTGGTTT 57.006 33.333 0.00 0.00 0.00 3.27
2695 7464 1.448540 GTCCATGGCTCCTCACACG 60.449 63.158 6.96 0.00 0.00 4.49
2914 7693 7.386299 GCATAACATAGTGATAGACTTGGAAGG 59.614 40.741 0.00 0.00 35.96 3.46
3055 7882 7.119262 CGGATCTGAAGGTAAAATAACACAACT 59.881 37.037 0.00 0.00 0.00 3.16
3056 7883 8.451748 GGATCTGAAGGTAAAATAACACAACTC 58.548 37.037 0.00 0.00 0.00 3.01
3057 7884 9.220767 GATCTGAAGGTAAAATAACACAACTCT 57.779 33.333 0.00 0.00 0.00 3.24
3058 7885 8.974060 TCTGAAGGTAAAATAACACAACTCTT 57.026 30.769 0.00 0.00 0.00 2.85
3293 8146 2.163211 GAGGAAAGGAGAAAGTGCATGC 59.837 50.000 11.82 11.82 0.00 4.06
3294 8147 1.888512 GGAAAGGAGAAAGTGCATGCA 59.111 47.619 18.46 18.46 0.00 3.96
3295 8148 2.494870 GGAAAGGAGAAAGTGCATGCAT 59.505 45.455 25.64 8.04 0.00 3.96
3296 8149 3.508762 GAAAGGAGAAAGTGCATGCATG 58.491 45.455 25.64 22.70 0.00 4.06
3373 8758 8.244113 CAGTTTGGTACCATTCTTTATTTCTCC 58.756 37.037 17.17 0.00 0.00 3.71
3377 8762 5.007724 GGTACCATTCTTTATTTCTCCGCAG 59.992 44.000 7.15 0.00 0.00 5.18
3379 8764 4.396166 ACCATTCTTTATTTCTCCGCAGTG 59.604 41.667 0.00 0.00 0.00 3.66
3381 8766 2.356135 TCTTTATTTCTCCGCAGTGGC 58.644 47.619 0.00 0.00 37.80 5.01
3382 8767 2.083774 CTTTATTTCTCCGCAGTGGCA 58.916 47.619 0.00 0.00 41.24 4.92
3383 8768 1.737838 TTATTTCTCCGCAGTGGCAG 58.262 50.000 0.00 0.00 41.24 4.85
3384 8769 0.744414 TATTTCTCCGCAGTGGCAGC 60.744 55.000 0.00 0.00 41.24 5.25
3385 8770 2.753009 ATTTCTCCGCAGTGGCAGCA 62.753 55.000 0.00 0.00 41.24 4.41
3387 8772 4.694233 CTCCGCAGTGGCAGCAGT 62.694 66.667 0.00 0.00 41.24 4.40
3428 9794 2.005451 CACTCGGAAGGAAGCTGATTG 58.995 52.381 0.00 0.00 0.00 2.67
3479 9845 6.389091 TGCATGAATTGGACAATGAAGTTAC 58.611 36.000 0.00 0.00 0.00 2.50
3482 9848 8.243426 GCATGAATTGGACAATGAAGTTACTAA 58.757 33.333 0.00 0.00 0.00 2.24
3512 9882 6.119240 ACTCTACACTAGTACTGTGTACCA 57.881 41.667 23.11 15.94 45.49 3.25
3516 9886 5.899120 ACACTAGTACTGTGTACCATGAG 57.101 43.478 21.81 5.20 45.49 2.90
3518 9888 6.008331 ACACTAGTACTGTGTACCATGAGAA 58.992 40.000 21.81 0.00 45.49 2.87
3522 9892 6.420913 AGTACTGTGTACCATGAGAAACTT 57.579 37.500 0.00 0.00 0.00 2.66
3523 9893 7.534723 AGTACTGTGTACCATGAGAAACTTA 57.465 36.000 0.00 0.00 0.00 2.24
3524 9894 7.959175 AGTACTGTGTACCATGAGAAACTTAA 58.041 34.615 0.00 0.00 0.00 1.85
3550 9920 4.363991 AAACCAAGCTCAAGTCTCATCT 57.636 40.909 0.00 0.00 0.00 2.90
3551 9921 5.489792 AAACCAAGCTCAAGTCTCATCTA 57.510 39.130 0.00 0.00 0.00 1.98
3552 9922 4.734398 ACCAAGCTCAAGTCTCATCTAG 57.266 45.455 0.00 0.00 0.00 2.43
3554 9924 4.530161 ACCAAGCTCAAGTCTCATCTAGTT 59.470 41.667 0.00 0.00 0.00 2.24
3555 9925 5.108517 CCAAGCTCAAGTCTCATCTAGTTC 58.891 45.833 0.00 0.00 0.00 3.01
3556 9926 5.337089 CCAAGCTCAAGTCTCATCTAGTTCA 60.337 44.000 0.00 0.00 0.00 3.18
3557 9927 5.991933 AGCTCAAGTCTCATCTAGTTCAA 57.008 39.130 0.00 0.00 0.00 2.69
3558 9928 6.352016 AGCTCAAGTCTCATCTAGTTCAAA 57.648 37.500 0.00 0.00 0.00 2.69
3559 9929 6.945218 AGCTCAAGTCTCATCTAGTTCAAAT 58.055 36.000 0.00 0.00 0.00 2.32
3560 9930 7.041107 AGCTCAAGTCTCATCTAGTTCAAATC 58.959 38.462 0.00 0.00 0.00 2.17
3596 9970 1.605058 GGTGGAAGCGAGACTAGCCA 61.605 60.000 3.70 0.00 32.23 4.75
3599 9973 1.513158 GAAGCGAGACTAGCCAGCA 59.487 57.895 3.70 0.00 34.64 4.41
3600 9974 0.108615 GAAGCGAGACTAGCCAGCAA 60.109 55.000 3.70 0.00 34.64 3.91
3601 9975 0.108424 AAGCGAGACTAGCCAGCAAG 60.108 55.000 3.70 0.00 34.64 4.01
3602 9976 1.216710 GCGAGACTAGCCAGCAAGT 59.783 57.895 0.00 0.00 0.00 3.16
3604 9978 0.528017 CGAGACTAGCCAGCAAGTGA 59.472 55.000 0.00 0.00 0.00 3.41
3606 9980 1.273606 GAGACTAGCCAGCAAGTGACA 59.726 52.381 0.00 0.00 0.00 3.58
3608 9982 2.304180 AGACTAGCCAGCAAGTGACAAT 59.696 45.455 0.00 0.00 0.00 2.71
3609 9983 2.417933 GACTAGCCAGCAAGTGACAATG 59.582 50.000 0.00 0.00 0.00 2.82
3610 9984 1.131883 CTAGCCAGCAAGTGACAATGC 59.868 52.381 5.39 5.39 42.87 3.56
3611 9985 0.824595 AGCCAGCAAGTGACAATGCA 60.825 50.000 14.32 0.00 44.95 3.96
3613 9987 0.956633 CCAGCAAGTGACAATGCAGT 59.043 50.000 14.32 0.00 44.95 4.40
3614 9988 1.335597 CCAGCAAGTGACAATGCAGTG 60.336 52.381 13.51 13.51 44.95 3.66
3617 9991 1.929038 GCAAGTGACAATGCAGTGCAG 60.929 52.381 24.20 13.30 43.65 4.41
3623 10017 0.033796 ACAATGCAGTGCAGGCCTAT 60.034 50.000 24.20 1.87 43.65 2.57
3647 10041 5.366460 ACCATTGAATTGCATGTGTGAAAA 58.634 33.333 0.00 0.00 0.00 2.29
3685 10079 1.377333 GGCAGGCAGTAGGTTGTCC 60.377 63.158 0.00 0.00 0.00 4.02
3692 10086 1.608283 GCAGTAGGTTGTCCTGTGTCC 60.608 57.143 0.00 0.00 44.81 4.02
3695 10089 0.178955 TAGGTTGTCCTGTGTCCGGA 60.179 55.000 0.00 0.00 44.81 5.14
3751 10145 6.457851 GGCAACAAGAAAGCTTTTATGAAG 57.542 37.500 23.84 17.60 30.14 3.02
3764 10158 8.401490 AGCTTTTATGAAGTTGAGAGAACAAT 57.599 30.769 0.00 0.00 32.36 2.71
3765 10159 8.854117 AGCTTTTATGAAGTTGAGAGAACAATT 58.146 29.630 0.00 0.00 32.36 2.32
3792 10186 5.131067 AGTAATGTAGCTACATGGAGACGA 58.869 41.667 34.18 14.46 45.55 4.20
3797 10191 3.791973 AGCTACATGGAGACGAAAGAG 57.208 47.619 9.87 0.00 0.00 2.85
3798 10192 3.093057 AGCTACATGGAGACGAAAGAGT 58.907 45.455 9.87 0.00 0.00 3.24
3799 10193 3.511934 AGCTACATGGAGACGAAAGAGTT 59.488 43.478 9.87 0.00 0.00 3.01
3801 10195 5.185249 AGCTACATGGAGACGAAAGAGTTTA 59.815 40.000 9.87 0.00 0.00 2.01
3802 10196 5.867716 GCTACATGGAGACGAAAGAGTTTAA 59.132 40.000 9.87 0.00 0.00 1.52
3803 10197 6.535508 GCTACATGGAGACGAAAGAGTTTAAT 59.464 38.462 9.87 0.00 0.00 1.40
3805 10199 7.745620 ACATGGAGACGAAAGAGTTTAATTT 57.254 32.000 0.00 0.00 0.00 1.82
3806 10200 7.584987 ACATGGAGACGAAAGAGTTTAATTTG 58.415 34.615 0.00 0.00 0.00 2.32
3807 10201 7.444183 ACATGGAGACGAAAGAGTTTAATTTGA 59.556 33.333 0.00 0.00 0.00 2.69
3827 10224 6.680874 TTGATTTTGTTTCAATTGCTTGCT 57.319 29.167 0.00 0.00 32.11 3.91
3831 10228 4.861389 TTGTTTCAATTGCTTGCTTGTG 57.139 36.364 0.00 0.00 32.11 3.33
3833 10230 4.502016 TGTTTCAATTGCTTGCTTGTGAA 58.498 34.783 0.00 0.00 32.11 3.18
3835 10232 3.797451 TCAATTGCTTGCTTGTGAACA 57.203 38.095 0.00 0.00 32.11 3.18
3836 10233 4.325028 TCAATTGCTTGCTTGTGAACAT 57.675 36.364 0.00 0.00 32.11 2.71
3838 10235 6.028146 TCAATTGCTTGCTTGTGAACATAT 57.972 33.333 0.00 0.00 32.11 1.78
3839 10236 7.155655 TCAATTGCTTGCTTGTGAACATATA 57.844 32.000 0.00 0.00 32.11 0.86
3840 10237 7.774134 TCAATTGCTTGCTTGTGAACATATAT 58.226 30.769 0.00 0.00 32.11 0.86
3870 10282 2.289002 GGCAGTGAGTGAGTCTTGTTTG 59.711 50.000 0.00 0.00 0.00 2.93
3882 10294 0.825010 CTTGTTTGTGGGCAGGAGCT 60.825 55.000 0.00 0.00 41.70 4.09
3883 10295 0.476338 TTGTTTGTGGGCAGGAGCTA 59.524 50.000 0.00 0.00 41.70 3.32
3886 10298 1.474077 GTTTGTGGGCAGGAGCTATTG 59.526 52.381 0.00 0.00 41.70 1.90
3887 10299 0.698238 TTGTGGGCAGGAGCTATTGT 59.302 50.000 0.00 0.00 41.70 2.71
3888 10300 0.253044 TGTGGGCAGGAGCTATTGTC 59.747 55.000 0.00 0.00 41.70 3.18
3889 10301 0.464554 GTGGGCAGGAGCTATTGTCC 60.465 60.000 12.48 12.48 41.70 4.02
3890 10302 0.913934 TGGGCAGGAGCTATTGTCCA 60.914 55.000 16.92 16.92 46.21 4.02
3891 10303 0.255890 GGGCAGGAGCTATTGTCCAA 59.744 55.000 14.07 0.00 38.92 3.53
3892 10304 1.133668 GGGCAGGAGCTATTGTCCAAT 60.134 52.381 14.07 0.00 38.92 3.16
3893 10305 2.106511 GGGCAGGAGCTATTGTCCAATA 59.893 50.000 14.07 0.22 38.92 1.90
3894 10306 3.245052 GGGCAGGAGCTATTGTCCAATAT 60.245 47.826 14.07 0.00 38.92 1.28
3895 10307 4.006319 GGCAGGAGCTATTGTCCAATATC 58.994 47.826 0.48 0.00 41.70 1.63
3896 10308 4.263243 GGCAGGAGCTATTGTCCAATATCT 60.263 45.833 3.69 3.69 41.70 1.98
3898 10310 5.411053 GCAGGAGCTATTGTCCAATATCTTC 59.589 44.000 5.22 3.76 36.43 2.87
3900 10312 6.994496 CAGGAGCTATTGTCCAATATCTTCAA 59.006 38.462 10.33 0.00 36.43 2.69
3901 10313 7.664731 CAGGAGCTATTGTCCAATATCTTCAAT 59.335 37.037 10.33 0.00 36.43 2.57
3902 10314 7.882271 AGGAGCTATTGTCCAATATCTTCAATC 59.118 37.037 10.33 0.00 36.43 2.67
3903 10315 7.663081 GGAGCTATTGTCCAATATCTTCAATCA 59.337 37.037 5.22 0.00 31.96 2.57
3904 10316 9.228949 GAGCTATTGTCCAATATCTTCAATCAT 57.771 33.333 5.22 0.00 31.96 2.45
3911 10323 7.226523 TGTCCAATATCTTCAATCATAACACCG 59.773 37.037 0.00 0.00 0.00 4.94
3913 10325 7.441157 TCCAATATCTTCAATCATAACACCGAC 59.559 37.037 0.00 0.00 0.00 4.79
3914 10326 7.226523 CCAATATCTTCAATCATAACACCGACA 59.773 37.037 0.00 0.00 0.00 4.35
3917 10329 5.487433 TCTTCAATCATAACACCGACACAT 58.513 37.500 0.00 0.00 0.00 3.21
3935 10347 5.352284 ACACATCGATCTTGAATAGGTCAC 58.648 41.667 9.97 0.00 35.39 3.67
3936 10348 5.127845 ACACATCGATCTTGAATAGGTCACT 59.872 40.000 9.97 0.00 35.39 3.41
3939 10351 6.773200 ACATCGATCTTGAATAGGTCACTAGA 59.227 38.462 0.00 0.00 35.39 2.43
3940 10352 6.869315 TCGATCTTGAATAGGTCACTAGAG 57.131 41.667 0.00 0.00 35.39 2.43
3941 10353 5.765677 TCGATCTTGAATAGGTCACTAGAGG 59.234 44.000 0.00 0.00 35.39 3.69
3942 10354 5.765677 CGATCTTGAATAGGTCACTAGAGGA 59.234 44.000 0.00 0.00 35.39 3.71
3943 10355 6.293735 CGATCTTGAATAGGTCACTAGAGGAC 60.294 46.154 0.00 3.67 35.39 3.85
3944 10356 5.827756 TCTTGAATAGGTCACTAGAGGACA 58.172 41.667 16.99 2.98 35.39 4.02
3946 10358 6.378564 TCTTGAATAGGTCACTAGAGGACAAG 59.621 42.308 16.99 0.00 35.39 3.16
3948 10360 4.883021 ATAGGTCACTAGAGGACAAGGA 57.117 45.455 16.99 4.08 37.00 3.36
3949 10361 2.810164 AGGTCACTAGAGGACAAGGAC 58.190 52.381 16.99 0.00 37.00 3.85
3950 10362 1.473278 GGTCACTAGAGGACAAGGACG 59.527 57.143 16.99 0.00 37.00 4.79
3951 10363 1.135344 GTCACTAGAGGACAAGGACGC 60.135 57.143 12.38 0.00 35.36 5.19
3952 10364 0.173708 CACTAGAGGACAAGGACGCC 59.826 60.000 0.00 0.00 0.00 5.68
3954 10366 2.005960 CTAGAGGACAAGGACGCCGG 62.006 65.000 0.00 0.00 0.00 6.13
3957 10369 4.778143 GGACAAGGACGCCGGCAT 62.778 66.667 28.98 12.81 0.00 4.40
3969 10381 2.591753 CGGCATGGTGAGGGACAT 59.408 61.111 0.00 0.00 0.00 3.06
3972 10384 0.839946 GGCATGGTGAGGGACATACT 59.160 55.000 0.00 0.00 0.00 2.12
3975 10387 0.839946 ATGGTGAGGGACATACTGGC 59.160 55.000 0.00 0.00 0.00 4.85
3983 10395 3.558674 GACATACTGGCCAAGCACT 57.441 52.632 7.01 0.00 0.00 4.40
3984 10396 1.826385 GACATACTGGCCAAGCACTT 58.174 50.000 7.01 0.00 0.00 3.16
3985 10397 1.470098 GACATACTGGCCAAGCACTTG 59.530 52.381 7.01 3.32 40.13 3.16
3988 10400 2.584835 TACTGGCCAAGCACTTGATT 57.415 45.000 7.01 0.00 42.93 2.57
3989 10401 0.963962 ACTGGCCAAGCACTTGATTG 59.036 50.000 7.01 0.00 42.93 2.67
3990 10402 1.250328 CTGGCCAAGCACTTGATTGA 58.750 50.000 7.01 0.00 43.50 2.57
3991 10403 1.614903 CTGGCCAAGCACTTGATTGAA 59.385 47.619 7.01 0.00 43.50 2.69
3993 10405 2.231964 TGGCCAAGCACTTGATTGAATC 59.768 45.455 0.61 0.00 43.50 2.52
3994 10406 2.494870 GGCCAAGCACTTGATTGAATCT 59.505 45.455 11.94 0.00 43.50 2.40
3996 10408 4.201990 GGCCAAGCACTTGATTGAATCTAG 60.202 45.833 13.69 13.69 43.50 2.43
3998 10410 5.220815 GCCAAGCACTTGATTGAATCTAGAG 60.221 44.000 20.46 14.58 43.50 2.43
3999 10411 5.296283 CCAAGCACTTGATTGAATCTAGAGG 59.704 44.000 20.46 13.50 43.50 3.69
4000 10412 5.690464 AGCACTTGATTGAATCTAGAGGT 57.310 39.130 20.46 15.71 35.99 3.85
4002 10414 7.187824 AGCACTTGATTGAATCTAGAGGTAA 57.812 36.000 20.46 0.00 33.61 2.85
4004 10416 8.270744 AGCACTTGATTGAATCTAGAGGTAAAT 58.729 33.333 20.46 0.00 33.61 1.40
4005 10417 8.555361 GCACTTGATTGAATCTAGAGGTAAATC 58.445 37.037 20.46 4.23 35.99 2.17
4006 10418 9.605275 CACTTGATTGAATCTAGAGGTAAATCA 57.395 33.333 20.46 12.21 35.99 2.57
4007 10419 9.829507 ACTTGATTGAATCTAGAGGTAAATCAG 57.170 33.333 20.46 12.23 34.91 2.90
4008 10420 8.668510 TTGATTGAATCTAGAGGTAAATCAGC 57.331 34.615 14.44 4.28 34.91 4.26
4009 10421 7.795047 TGATTGAATCTAGAGGTAAATCAGCA 58.205 34.615 12.21 4.63 31.07 4.41
4010 10422 7.712639 TGATTGAATCTAGAGGTAAATCAGCAC 59.287 37.037 12.21 2.48 31.07 4.40
4011 10423 6.544928 TGAATCTAGAGGTAAATCAGCACA 57.455 37.500 0.00 0.00 0.00 4.57
4012 10424 6.577103 TGAATCTAGAGGTAAATCAGCACAG 58.423 40.000 0.00 0.00 0.00 3.66
4013 10425 4.392921 TCTAGAGGTAAATCAGCACAGC 57.607 45.455 0.00 0.00 0.00 4.40
4014 10426 4.026744 TCTAGAGGTAAATCAGCACAGCT 58.973 43.478 0.00 0.00 40.77 4.24
4024 10436 2.932663 AGCACAGCTGTTAATGCGT 58.067 47.368 18.94 5.02 42.98 5.24
4025 10437 1.238439 AGCACAGCTGTTAATGCGTT 58.762 45.000 18.94 0.00 42.98 4.84
4026 10438 1.608590 AGCACAGCTGTTAATGCGTTT 59.391 42.857 18.94 0.00 42.98 3.60
4027 10439 1.715519 GCACAGCTGTTAATGCGTTTG 59.284 47.619 18.94 2.67 35.28 2.93
4028 10440 2.858260 GCACAGCTGTTAATGCGTTTGT 60.858 45.455 18.94 0.00 35.28 2.83
4029 10441 3.371168 CACAGCTGTTAATGCGTTTGTT 58.629 40.909 18.94 0.00 35.28 2.83
4030 10442 3.796178 CACAGCTGTTAATGCGTTTGTTT 59.204 39.130 18.94 0.00 35.28 2.83
4031 10443 3.796178 ACAGCTGTTAATGCGTTTGTTTG 59.204 39.130 15.25 0.00 35.28 2.93
4032 10444 2.794350 AGCTGTTAATGCGTTTGTTTGC 59.206 40.909 0.00 0.00 35.28 3.68
4033 10445 2.537625 GCTGTTAATGCGTTTGTTTGCA 59.462 40.909 0.00 0.00 46.51 4.08
4034 10446 3.601360 GCTGTTAATGCGTTTGTTTGCAC 60.601 43.478 0.00 0.00 45.07 4.57
4035 10447 3.775202 TGTTAATGCGTTTGTTTGCACT 58.225 36.364 0.00 0.00 45.07 4.40
4036 10448 3.794028 TGTTAATGCGTTTGTTTGCACTC 59.206 39.130 0.00 0.00 45.07 3.51
4038 10450 3.980646 AATGCGTTTGTTTGCACTCTA 57.019 38.095 0.00 0.00 45.07 2.43
4041 10453 1.264288 GCGTTTGTTTGCACTCTAGCT 59.736 47.619 0.00 0.00 34.99 3.32
4043 10455 3.792124 GCGTTTGTTTGCACTCTAGCTTT 60.792 43.478 0.00 0.00 34.99 3.51
4044 10456 3.725740 CGTTTGTTTGCACTCTAGCTTTG 59.274 43.478 0.00 0.00 34.99 2.77
4045 10457 4.672409 GTTTGTTTGCACTCTAGCTTTGT 58.328 39.130 0.00 0.00 34.99 2.83
4046 10458 4.552166 TTGTTTGCACTCTAGCTTTGTC 57.448 40.909 0.00 0.00 34.99 3.18
4048 10460 3.809832 TGTTTGCACTCTAGCTTTGTCTC 59.190 43.478 0.00 0.00 34.99 3.36
4049 10461 4.061596 GTTTGCACTCTAGCTTTGTCTCT 58.938 43.478 0.00 0.00 34.99 3.10
4050 10462 3.584406 TGCACTCTAGCTTTGTCTCTC 57.416 47.619 0.00 0.00 34.99 3.20
4051 10463 3.161067 TGCACTCTAGCTTTGTCTCTCT 58.839 45.455 0.00 0.00 34.99 3.10
4052 10464 3.576118 TGCACTCTAGCTTTGTCTCTCTT 59.424 43.478 0.00 0.00 34.99 2.85
4053 10465 4.039730 TGCACTCTAGCTTTGTCTCTCTTT 59.960 41.667 0.00 0.00 34.99 2.52
4054 10466 4.625311 GCACTCTAGCTTTGTCTCTCTTTC 59.375 45.833 0.00 0.00 0.00 2.62
4055 10467 5.566627 GCACTCTAGCTTTGTCTCTCTTTCT 60.567 44.000 0.00 0.00 0.00 2.52
4056 10468 6.454795 CACTCTAGCTTTGTCTCTCTTTCTT 58.545 40.000 0.00 0.00 0.00 2.52
4058 10470 6.493458 ACTCTAGCTTTGTCTCTCTTTCTTCT 59.507 38.462 0.00 0.00 0.00 2.85
4059 10471 7.015195 ACTCTAGCTTTGTCTCTCTTTCTTCTT 59.985 37.037 0.00 0.00 0.00 2.52
4061 10473 8.207545 TCTAGCTTTGTCTCTCTTTCTTCTTTT 58.792 33.333 0.00 0.00 0.00 2.27
4062 10474 7.025485 AGCTTTGTCTCTCTTTCTTCTTTTG 57.975 36.000 0.00 0.00 0.00 2.44
4064 10476 7.337942 AGCTTTGTCTCTCTTTCTTCTTTTGAA 59.662 33.333 0.00 0.00 36.89 2.69
4069 10481 8.624776 TGTCTCTCTTTCTTCTTTTGAAATTCC 58.375 33.333 0.00 0.00 38.07 3.01
4085 10497 7.408756 TGAAATTCCCTTATGATTTGTGAGG 57.591 36.000 0.00 0.00 0.00 3.86
4095 10507 1.747355 GATTTGTGAGGGAGGCATGTG 59.253 52.381 0.00 0.00 0.00 3.21
4105 10517 2.945668 GGGAGGCATGTGAATTGTACTC 59.054 50.000 0.00 0.00 0.00 2.59
4106 10518 3.370953 GGGAGGCATGTGAATTGTACTCT 60.371 47.826 0.00 0.00 0.00 3.24
4107 10519 3.624861 GGAGGCATGTGAATTGTACTCTG 59.375 47.826 0.00 0.00 0.00 3.35
4109 10521 2.749076 GGCATGTGAATTGTACTCTGCA 59.251 45.455 13.95 0.00 32.67 4.41
4110 10522 3.379372 GGCATGTGAATTGTACTCTGCAT 59.621 43.478 13.95 0.00 32.67 3.96
4111 10523 4.348656 GCATGTGAATTGTACTCTGCATG 58.651 43.478 0.00 0.00 36.51 4.06
4114 10526 4.650734 TGTGAATTGTACTCTGCATGGAA 58.349 39.130 0.00 0.00 0.00 3.53
4115 10527 5.069318 TGTGAATTGTACTCTGCATGGAAA 58.931 37.500 0.00 0.00 0.00 3.13
4116 10528 5.181811 TGTGAATTGTACTCTGCATGGAAAG 59.818 40.000 0.00 0.00 0.00 2.62
4119 10531 4.350368 TTGTACTCTGCATGGAAAGTGA 57.650 40.909 3.06 0.00 0.00 3.41
4125 10537 5.776744 ACTCTGCATGGAAAGTGAAAAATC 58.223 37.500 0.00 0.00 0.00 2.17
4127 10539 6.716628 ACTCTGCATGGAAAGTGAAAAATCTA 59.283 34.615 0.00 0.00 0.00 1.98
4128 10540 7.395489 ACTCTGCATGGAAAGTGAAAAATCTAT 59.605 33.333 0.00 0.00 0.00 1.98
4130 10542 7.613022 TCTGCATGGAAAGTGAAAAATCTATCT 59.387 33.333 0.00 0.00 0.00 1.98
4131 10543 8.806429 TGCATGGAAAGTGAAAAATCTATCTA 57.194 30.769 0.00 0.00 0.00 1.98
4132 10544 8.896744 TGCATGGAAAGTGAAAAATCTATCTAG 58.103 33.333 0.00 0.00 0.00 2.43
4133 10545 9.113838 GCATGGAAAGTGAAAAATCTATCTAGA 57.886 33.333 0.00 0.00 36.65 2.43
4154 10579 9.481340 TCTAGATTATTCACTCATTTGGATTCG 57.519 33.333 0.00 0.00 0.00 3.34
4161 10586 2.489329 ACTCATTTGGATTCGGTTGCAG 59.511 45.455 0.00 0.00 0.00 4.41
4162 10587 1.202114 TCATTTGGATTCGGTTGCAGC 59.798 47.619 0.00 0.00 0.00 5.25
4175 10600 2.229784 GGTTGCAGCAGCTGTTAGAAAT 59.770 45.455 23.60 0.00 42.74 2.17
4176 10601 3.240069 GTTGCAGCAGCTGTTAGAAATG 58.760 45.455 23.60 4.55 42.74 2.32
4183 10608 4.457257 AGCAGCTGTTAGAAATGAAGTTCC 59.543 41.667 16.64 0.00 0.00 3.62
4184 10609 4.379918 GCAGCTGTTAGAAATGAAGTTCCC 60.380 45.833 16.64 0.00 0.00 3.97
4185 10610 5.006386 CAGCTGTTAGAAATGAAGTTCCCT 58.994 41.667 5.25 0.00 0.00 4.20
4186 10611 5.474876 CAGCTGTTAGAAATGAAGTTCCCTT 59.525 40.000 5.25 0.00 0.00 3.95
4187 10612 5.474876 AGCTGTTAGAAATGAAGTTCCCTTG 59.525 40.000 0.00 0.00 0.00 3.61
4193 10618 5.803552 AGAAATGAAGTTCCCTTGAGAGAG 58.196 41.667 0.00 0.00 0.00 3.20
4202 10627 1.666054 CCTTGAGAGAGGAGCAATGC 58.334 55.000 0.00 0.00 39.25 3.56
4205 10630 1.227497 GAGAGAGGAGCAATGCGGG 60.227 63.158 0.00 0.00 0.00 6.13
4214 10639 4.738998 CAATGCGGGGTGGGCAGA 62.739 66.667 0.00 0.00 44.71 4.26
4216 10641 4.511246 ATGCGGGGTGGGCAGATG 62.511 66.667 0.00 0.00 44.71 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.762251 ACAACTTGATCCAGACTAAAAGCC 59.238 41.667 0.00 0.00 0.00 4.35
1 2 5.948992 ACAACTTGATCCAGACTAAAAGC 57.051 39.130 0.00 0.00 0.00 3.51
2 3 6.145535 GCAACAACTTGATCCAGACTAAAAG 58.854 40.000 0.00 0.00 0.00 2.27
8 9 2.143122 TCGCAACAACTTGATCCAGAC 58.857 47.619 0.00 0.00 0.00 3.51
27 28 7.173218 TGAATAAATCCTTCGCTTATCCACATC 59.827 37.037 0.00 0.00 0.00 3.06
86 87 7.838884 AGATACCAACTCCTTGTAGTAGTTTC 58.161 38.462 0.00 0.00 31.21 2.78
90 91 7.288560 TCCTAGATACCAACTCCTTGTAGTAG 58.711 42.308 0.00 0.00 0.00 2.57
123 124 9.577222 TCATGAAAATATGATTTATCTGGCTCA 57.423 29.630 0.00 0.00 32.39 4.26
144 145 3.216800 GCTGCAAACCCATAGATCATGA 58.783 45.455 0.00 0.00 36.69 3.07
145 146 2.953648 TGCTGCAAACCCATAGATCATG 59.046 45.455 0.00 0.00 0.00 3.07
146 147 3.301794 TGCTGCAAACCCATAGATCAT 57.698 42.857 0.00 0.00 0.00 2.45
228 232 7.702348 TCACTAACAATATCATTGTCTCTGTCG 59.298 37.037 5.08 0.00 0.00 4.35
232 236 9.593134 GAGTTCACTAACAATATCATTGTCTCT 57.407 33.333 5.08 0.00 38.12 3.10
258 262 4.981794 ACCGAAGAAACTTTTGTGAACTG 58.018 39.130 0.00 0.00 0.00 3.16
296 300 3.726607 AGTTCATCTGATTGAGATCGGC 58.273 45.455 0.00 0.00 39.64 5.54
303 307 5.488262 TCCAGTCAAGTTCATCTGATTGA 57.512 39.130 0.00 0.00 0.00 2.57
321 325 0.876342 GCGCCCGTAGAGATTTCCAG 60.876 60.000 0.00 0.00 0.00 3.86
335 339 0.955428 TCTCACTGATTGTTGCGCCC 60.955 55.000 4.18 0.00 0.00 6.13
360 365 6.385176 TCATCTTGATCTGGGTAGTTGAGATT 59.615 38.462 0.00 0.00 0.00 2.40
371 376 2.573369 CAGGCTTCATCTTGATCTGGG 58.427 52.381 0.00 0.00 0.00 4.45
378 383 3.349927 TGAATCACCAGGCTTCATCTTG 58.650 45.455 0.00 0.00 0.00 3.02
451 456 8.445275 TGATGCAACGATTTAACCAATATAGT 57.555 30.769 0.00 0.00 0.00 2.12
509 514 9.727859 TCTCTGGAAGTACAGATATATCAGTAC 57.272 37.037 28.17 28.17 45.67 2.73
511 516 9.073475 GTTCTCTGGAAGTACAGATATATCAGT 57.927 37.037 15.08 14.71 45.67 3.41
552 557 7.094377 TGGTCAAGTCTAAGGAATTGCAATAAC 60.094 37.037 13.39 8.72 44.22 1.89
568 573 6.748132 CCAAATTTACACATTGGTCAAGTCT 58.252 36.000 0.00 0.00 38.99 3.24
588 593 7.615365 ACAATGCTATCAGGAAGATTTACCAAA 59.385 33.333 0.00 0.00 38.19 3.28
594 599 6.183360 GCTTCACAATGCTATCAGGAAGATTT 60.183 38.462 0.00 0.00 38.19 2.17
641 646 3.906720 TCATACTTGTGTAGGGAAGCC 57.093 47.619 0.00 0.00 32.01 4.35
642 647 5.070580 AGGTATCATACTTGTGTAGGGAAGC 59.929 44.000 0.00 0.00 32.01 3.86
649 654 5.773680 GCCCTCTAGGTATCATACTTGTGTA 59.226 44.000 0.00 0.00 38.26 2.90
651 656 4.835615 AGCCCTCTAGGTATCATACTTGTG 59.164 45.833 0.00 0.00 38.26 3.33
661 666 4.407296 CAGACAAAAGAGCCCTCTAGGTAT 59.593 45.833 0.00 0.00 39.39 2.73
676 681 4.753516 TCCTCAGACTTGTCAGACAAAA 57.246 40.909 16.85 0.00 37.69 2.44
677 682 4.753516 TTCCTCAGACTTGTCAGACAAA 57.246 40.909 16.85 1.17 37.69 2.83
679 684 3.706594 AGTTTCCTCAGACTTGTCAGACA 59.293 43.478 0.00 0.00 0.00 3.41
689 694 1.694696 ACCCAGTCAGTTTCCTCAGAC 59.305 52.381 0.00 0.00 0.00 3.51
691 696 2.938956 AACCCAGTCAGTTTCCTCAG 57.061 50.000 0.00 0.00 0.00 3.35
706 711 2.046285 CCATGTGGCCTCGAAACCC 61.046 63.158 3.32 0.00 0.00 4.11
716 721 0.748450 CCAATCACCATCCATGTGGC 59.252 55.000 2.30 0.00 43.27 5.01
756 761 4.656112 AGAAGTCTGAGTTGGGAAAGAGAA 59.344 41.667 1.76 0.00 0.00 2.87
787 792 7.082602 GCAGCAGATACATTCTCCAATTAATG 58.917 38.462 0.00 0.00 38.71 1.90
790 795 5.065914 GGCAGCAGATACATTCTCCAATTA 58.934 41.667 0.00 0.00 29.93 1.40
857 862 6.343716 TGGTGCAATTCAATAACAGTTCAT 57.656 33.333 0.00 0.00 0.00 2.57
859 864 4.622740 GCTGGTGCAATTCAATAACAGTTC 59.377 41.667 0.00 0.00 39.41 3.01
861 866 4.178545 GCTGGTGCAATTCAATAACAGT 57.821 40.909 0.00 0.00 39.41 3.55
884 889 1.133976 CCAACCCATCATCTCCCAGTC 60.134 57.143 0.00 0.00 0.00 3.51
915 920 3.534357 TCTTCCTCAGAGACACCTTCT 57.466 47.619 0.00 0.00 37.23 2.85
941 946 3.314553 TCAAACACCTTCTCGATTCGTC 58.685 45.455 5.89 0.00 0.00 4.20
948 953 2.670414 GAGCTCATCAAACACCTTCTCG 59.330 50.000 9.40 0.00 0.00 4.04
957 962 1.377536 GAGGGCAGAGCTCATCAAAC 58.622 55.000 17.77 0.69 0.00 2.93
958 963 0.254178 GGAGGGCAGAGCTCATCAAA 59.746 55.000 17.77 0.00 0.00 2.69
964 969 1.381872 TAGGTGGAGGGCAGAGCTC 60.382 63.158 5.27 5.27 0.00 4.09
1002 1007 0.752658 GCTGGCCAAAATACCCCATC 59.247 55.000 7.01 0.00 0.00 3.51
1031 1036 2.777094 TCGATGTTGACAGCATCCAAA 58.223 42.857 22.10 8.94 39.48 3.28
1039 1044 0.729116 GGCACCATCGATGTTGACAG 59.271 55.000 25.18 10.87 27.36 3.51
1050 1055 4.559647 TCAAGTTGTTGAAGGGCACCATC 61.560 47.826 2.11 0.00 45.06 3.51
1075 1080 4.291249 AGCCAGGTCAGAAAACCCTATAAA 59.709 41.667 0.00 0.00 40.42 1.40
1081 1086 0.961753 CAAGCCAGGTCAGAAAACCC 59.038 55.000 0.00 0.00 40.42 4.11
1082 1087 1.692411 ACAAGCCAGGTCAGAAAACC 58.308 50.000 0.00 0.00 39.80 3.27
1088 1093 1.656441 GTGCAACAAGCCAGGTCAG 59.344 57.895 0.00 0.00 44.83 3.51
1125 1130 1.619807 GCAAATTGGGGAGCTGGCAT 61.620 55.000 0.00 0.00 0.00 4.40
1235 1240 4.437794 CCACCATGTCGAACAATCTCAATG 60.438 45.833 0.00 0.00 0.00 2.82
1265 1270 2.689034 CCTCCCACTCCCACTCCC 60.689 72.222 0.00 0.00 0.00 4.30
1386 6011 8.138712 AGCTGCTTGATATGTAGTAGACTTAAC 58.861 37.037 0.00 0.00 0.00 2.01
1402 6027 1.835494 ATGTTGCTGAGCTGCTTGAT 58.165 45.000 5.83 0.00 0.00 2.57
1452 6077 0.734889 GGTCAGGGCAATCATTCACG 59.265 55.000 0.00 0.00 0.00 4.35
1551 6176 1.603236 CCAGCCTCTCGAGTGAAGCT 61.603 60.000 15.85 13.17 0.00 3.74
1573 6198 5.975693 TTTTCCATGGTGTAATCCTTCAC 57.024 39.130 12.58 0.00 0.00 3.18
1692 6328 0.606673 GGCTGAACTTGTCCCACTCC 60.607 60.000 0.00 0.00 0.00 3.85
1714 6350 3.154710 CATATGCCTTGACATGCTCCAT 58.845 45.455 0.00 0.00 0.00 3.41
1737 6373 1.806542 CTTTGGTTGTCTCCATCACCG 59.193 52.381 0.00 0.00 37.33 4.94
1778 6432 2.042464 ACTTGCAGTTGTCTCCTCTCA 58.958 47.619 0.00 0.00 0.00 3.27
1842 6496 9.601971 GACAAAGCTTTTACGTATGTTTGATTA 57.398 29.630 9.53 0.00 0.00 1.75
1858 6512 9.213799 TGTTCAAACAAATTAAGACAAAGCTTT 57.786 25.926 5.69 5.69 35.67 3.51
2064 6762 2.569059 CTGTGCATCCACCATAGAAGG 58.431 52.381 0.00 0.00 41.35 3.46
2084 6782 5.409826 CACTTTGTACAGAGAGTCAAATCCC 59.590 44.000 19.53 0.00 31.58 3.85
2123 6823 1.071605 CCAAGCTGCAGACGTAACTC 58.928 55.000 20.43 0.00 0.00 3.01
2244 6944 2.677914 TGGAGAGTCACCAGAGTTCAA 58.322 47.619 5.03 0.00 33.22 2.69
2264 6964 4.208746 CAAGAGAGGATCCTACGGTAACT 58.791 47.826 16.16 5.29 33.66 2.24
2303 7003 0.179161 CCTGAGTTACCAGCGAGACG 60.179 60.000 0.00 0.00 32.97 4.18
2342 7042 1.965930 GTGGTGCATTGCTCGGTCA 60.966 57.895 10.49 0.00 0.00 4.02
2399 7099 3.312421 CGTGGATCTTGTCAAACTTGTGT 59.688 43.478 0.00 0.00 0.00 3.72
2454 7154 4.826556 TGTGATCCAAACGTGATGTGATA 58.173 39.130 0.00 0.00 0.00 2.15
2543 7246 1.069978 CCGCCAAACCAAAACTCCATT 59.930 47.619 0.00 0.00 0.00 3.16
2558 7264 0.614697 TCTCCAAGAGATCACCGCCA 60.615 55.000 0.00 0.00 33.35 5.69
2695 7464 5.254115 AGAGGCCATTTTCTAACTGGTAAC 58.746 41.667 5.01 0.00 32.42 2.50
2779 7558 1.202604 TCAACCTTGTCAACGACCTCC 60.203 52.381 0.00 0.00 0.00 4.30
2784 7563 3.372822 GTGTCTTTCAACCTTGTCAACGA 59.627 43.478 0.00 0.00 0.00 3.85
2914 7693 3.628646 ATGCTTGCACCCTCGTCCC 62.629 63.158 0.00 0.00 0.00 4.46
2959 7783 2.352960 GCTAACTTCCATGCTTTCTCGG 59.647 50.000 0.00 0.00 0.00 4.63
3214 8061 5.244626 CCTTGTTTCCATCTCCAGAACAAAT 59.755 40.000 0.00 0.00 0.00 2.32
3215 8062 4.584325 CCTTGTTTCCATCTCCAGAACAAA 59.416 41.667 0.00 0.00 0.00 2.83
3217 8064 3.394274 TCCTTGTTTCCATCTCCAGAACA 59.606 43.478 0.00 0.00 0.00 3.18
3293 8146 4.063689 CACCTTTCTAGCTAGCCATCATG 58.936 47.826 16.35 6.17 0.00 3.07
3294 8147 3.969976 TCACCTTTCTAGCTAGCCATCAT 59.030 43.478 16.35 0.00 0.00 2.45
3295 8148 3.374764 TCACCTTTCTAGCTAGCCATCA 58.625 45.455 16.35 0.00 0.00 3.07
3296 8149 3.639094 TCTCACCTTTCTAGCTAGCCATC 59.361 47.826 16.35 0.00 0.00 3.51
3373 8758 2.050714 CAAACTGCTGCCACTGCG 60.051 61.111 0.00 0.00 41.78 5.18
3377 8762 0.455410 TGACAACAAACTGCTGCCAC 59.545 50.000 0.00 0.00 0.00 5.01
3379 8764 2.351738 GGTATGACAACAAACTGCTGCC 60.352 50.000 0.00 0.00 0.00 4.85
3381 8766 2.548057 ACGGTATGACAACAAACTGCTG 59.452 45.455 0.00 0.00 0.00 4.41
3382 8767 2.846193 ACGGTATGACAACAAACTGCT 58.154 42.857 0.00 0.00 0.00 4.24
3383 8768 3.619233 AACGGTATGACAACAAACTGC 57.381 42.857 0.00 0.00 0.00 4.40
3384 8769 6.018588 TGAGTTAACGGTATGACAACAAACTG 60.019 38.462 0.00 0.00 0.00 3.16
3385 8770 6.018507 GTGAGTTAACGGTATGACAACAAACT 60.019 38.462 0.00 0.00 0.00 2.66
3387 8772 6.050432 AGTGAGTTAACGGTATGACAACAAA 58.950 36.000 0.00 0.00 0.00 2.83
3428 9794 4.511826 GTGTATTGCTAATAGGCACCAGTC 59.488 45.833 0.00 0.00 42.27 3.51
3482 9848 8.495361 CACAGTACTAGTGTAGAGTTATCTGT 57.505 38.462 5.39 0.00 36.96 3.41
3522 9892 9.905713 ATGAGACTTGAGCTTGGTTTATTATTA 57.094 29.630 0.00 0.00 0.00 0.98
3523 9893 8.814038 ATGAGACTTGAGCTTGGTTTATTATT 57.186 30.769 0.00 0.00 0.00 1.40
3524 9894 8.270744 AGATGAGACTTGAGCTTGGTTTATTAT 58.729 33.333 0.00 0.00 0.00 1.28
3550 9920 6.426937 GCTCACAACAAGGTAGATTTGAACTA 59.573 38.462 0.00 0.00 0.00 2.24
3551 9921 5.239525 GCTCACAACAAGGTAGATTTGAACT 59.760 40.000 0.00 0.00 0.00 3.01
3552 9922 5.008613 TGCTCACAACAAGGTAGATTTGAAC 59.991 40.000 0.00 0.00 0.00 3.18
3554 9924 4.713553 TGCTCACAACAAGGTAGATTTGA 58.286 39.130 0.00 0.00 0.00 2.69
3555 9925 4.083110 CCTGCTCACAACAAGGTAGATTTG 60.083 45.833 0.00 0.00 0.00 2.32
3556 9926 4.074970 CCTGCTCACAACAAGGTAGATTT 58.925 43.478 0.00 0.00 0.00 2.17
3557 9927 3.073062 ACCTGCTCACAACAAGGTAGATT 59.927 43.478 0.00 0.00 0.00 2.40
3558 9928 2.639839 ACCTGCTCACAACAAGGTAGAT 59.360 45.455 0.00 0.00 0.00 1.98
3559 9929 2.047061 ACCTGCTCACAACAAGGTAGA 58.953 47.619 0.00 0.00 0.00 2.59
3560 9930 2.146342 CACCTGCTCACAACAAGGTAG 58.854 52.381 0.00 0.00 0.00 3.18
3596 9970 0.313043 GCACTGCATTGTCACTTGCT 59.687 50.000 5.89 0.00 39.60 3.91
3599 9973 0.956633 CCTGCACTGCATTGTCACTT 59.043 50.000 3.64 0.00 38.13 3.16
3600 9974 1.521450 GCCTGCACTGCATTGTCACT 61.521 55.000 3.64 0.00 38.13 3.41
3601 9975 1.080974 GCCTGCACTGCATTGTCAC 60.081 57.895 3.64 0.00 38.13 3.67
3602 9976 2.270257 GGCCTGCACTGCATTGTCA 61.270 57.895 3.64 3.84 38.13 3.58
3604 9978 0.033796 ATAGGCCTGCACTGCATTGT 60.034 50.000 17.99 0.00 38.13 2.71
3606 9980 1.477558 GGTATAGGCCTGCACTGCATT 60.478 52.381 17.99 0.00 38.13 3.56
3608 9982 1.271127 TGGTATAGGCCTGCACTGCA 61.271 55.000 17.99 3.11 36.92 4.41
3609 9983 0.109342 ATGGTATAGGCCTGCACTGC 59.891 55.000 17.99 0.52 0.00 4.40
3610 9984 2.158769 TCAATGGTATAGGCCTGCACTG 60.159 50.000 17.99 7.64 0.00 3.66
3611 9985 2.126882 TCAATGGTATAGGCCTGCACT 58.873 47.619 17.99 0.00 0.00 4.40
3613 9987 3.882102 ATTCAATGGTATAGGCCTGCA 57.118 42.857 17.99 0.00 0.00 4.41
3614 9988 3.305608 GCAATTCAATGGTATAGGCCTGC 60.306 47.826 17.99 5.30 0.00 4.85
3617 9991 4.281688 ACATGCAATTCAATGGTATAGGCC 59.718 41.667 0.00 0.00 0.00 5.19
3623 10017 5.718724 TTCACACATGCAATTCAATGGTA 57.281 34.783 0.00 0.00 0.00 3.25
3647 10041 1.044790 GGGGCCTGCACTGCATTTAT 61.045 55.000 3.64 0.00 38.13 1.40
3667 10061 1.377333 GGACAACCTACTGCCTGCC 60.377 63.158 0.00 0.00 0.00 4.85
3668 10062 0.674895 CAGGACAACCTACTGCCTGC 60.675 60.000 0.00 0.00 45.94 4.85
3669 10063 3.540211 CAGGACAACCTACTGCCTG 57.460 57.895 0.00 0.00 45.94 4.85
3670 10064 0.687354 CACAGGACAACCTACTGCCT 59.313 55.000 0.00 0.00 45.94 4.75
3685 10079 1.948104 TGTCTTTTGTCCGGACACAG 58.052 50.000 36.40 30.97 41.67 3.66
3692 10086 5.418310 ACACAATACTTGTCTTTTGTCCG 57.582 39.130 0.00 0.00 43.23 4.79
3719 10113 6.199937 AGCTTTCTTGTTGCCAATAGTATG 57.800 37.500 0.00 0.00 0.00 2.39
3723 10117 7.814107 TCATAAAAGCTTTCTTGTTGCCAATAG 59.186 33.333 13.10 0.00 31.78 1.73
3764 10158 9.064706 GTCTCCATGTAGCTACATTACTACTAA 57.935 37.037 32.12 12.72 43.99 2.24
3765 10159 7.387122 CGTCTCCATGTAGCTACATTACTACTA 59.613 40.741 32.12 14.10 43.99 1.82
3766 10160 6.205076 CGTCTCCATGTAGCTACATTACTACT 59.795 42.308 32.12 11.94 43.99 2.57
3767 10161 6.204301 TCGTCTCCATGTAGCTACATTACTAC 59.796 42.308 32.12 24.73 43.99 2.73
3801 10195 8.192110 AGCAAGCAATTGAAACAAAATCAAATT 58.808 25.926 10.34 0.00 39.98 1.82
3802 10196 7.708998 AGCAAGCAATTGAAACAAAATCAAAT 58.291 26.923 10.34 0.00 39.98 2.32
3803 10197 7.086230 AGCAAGCAATTGAAACAAAATCAAA 57.914 28.000 10.34 0.00 39.98 2.69
3805 10199 6.093771 ACAAGCAAGCAATTGAAACAAAATCA 59.906 30.769 10.34 0.00 0.00 2.57
3806 10200 6.412653 CACAAGCAAGCAATTGAAACAAAATC 59.587 34.615 10.34 0.00 0.00 2.17
3807 10201 6.093771 TCACAAGCAAGCAATTGAAACAAAAT 59.906 30.769 10.34 0.00 0.00 1.82
3838 10235 9.314133 AGACTCACTCACTGCCATTATATTATA 57.686 33.333 0.00 0.00 0.00 0.98
3839 10236 8.200024 AGACTCACTCACTGCCATTATATTAT 57.800 34.615 0.00 0.00 0.00 1.28
3840 10237 7.603180 AGACTCACTCACTGCCATTATATTA 57.397 36.000 0.00 0.00 0.00 0.98
3854 10266 2.917933 CCCACAAACAAGACTCACTCA 58.082 47.619 0.00 0.00 0.00 3.41
3856 10268 1.064758 TGCCCACAAACAAGACTCACT 60.065 47.619 0.00 0.00 0.00 3.41
3857 10269 1.334869 CTGCCCACAAACAAGACTCAC 59.665 52.381 0.00 0.00 0.00 3.51
3870 10282 0.464554 GGACAATAGCTCCTGCCCAC 60.465 60.000 0.00 0.00 40.80 4.61
3886 10298 7.441157 TCGGTGTTATGATTGAAGATATTGGAC 59.559 37.037 0.00 0.00 0.00 4.02
3887 10299 7.441157 GTCGGTGTTATGATTGAAGATATTGGA 59.559 37.037 0.00 0.00 0.00 3.53
3888 10300 7.226523 TGTCGGTGTTATGATTGAAGATATTGG 59.773 37.037 0.00 0.00 0.00 3.16
3889 10301 8.064222 GTGTCGGTGTTATGATTGAAGATATTG 58.936 37.037 0.00 0.00 0.00 1.90
3890 10302 7.768582 TGTGTCGGTGTTATGATTGAAGATATT 59.231 33.333 0.00 0.00 0.00 1.28
3891 10303 7.272244 TGTGTCGGTGTTATGATTGAAGATAT 58.728 34.615 0.00 0.00 0.00 1.63
3892 10304 6.635755 TGTGTCGGTGTTATGATTGAAGATA 58.364 36.000 0.00 0.00 0.00 1.98
3893 10305 5.487433 TGTGTCGGTGTTATGATTGAAGAT 58.513 37.500 0.00 0.00 0.00 2.40
3894 10306 4.888917 TGTGTCGGTGTTATGATTGAAGA 58.111 39.130 0.00 0.00 0.00 2.87
3895 10307 5.500771 CGATGTGTCGGTGTTATGATTGAAG 60.501 44.000 0.00 0.00 44.00 3.02
3896 10308 4.328712 CGATGTGTCGGTGTTATGATTGAA 59.671 41.667 0.00 0.00 44.00 2.69
3898 10310 4.182191 CGATGTGTCGGTGTTATGATTG 57.818 45.455 0.00 0.00 44.00 2.67
3900 10312 5.451937 AAGATCGATGTGTCGGTGTTATGAT 60.452 40.000 0.54 0.00 41.93 2.45
3901 10313 4.142249 AAGATCGATGTGTCGGTGTTATGA 60.142 41.667 0.54 0.00 41.93 2.15
3902 10314 4.026558 CAAGATCGATGTGTCGGTGTTATG 60.027 45.833 0.54 0.00 41.84 1.90
3903 10315 4.112634 CAAGATCGATGTGTCGGTGTTAT 58.887 43.478 0.54 0.00 41.84 1.89
3904 10316 3.191791 TCAAGATCGATGTGTCGGTGTTA 59.808 43.478 0.54 0.00 41.84 2.41
3905 10317 2.029380 TCAAGATCGATGTGTCGGTGTT 60.029 45.455 0.54 0.00 44.21 3.32
3911 10323 5.460419 GTGACCTATTCAAGATCGATGTGTC 59.540 44.000 0.54 1.13 35.39 3.67
3913 10325 5.595885 AGTGACCTATTCAAGATCGATGTG 58.404 41.667 0.54 0.27 35.39 3.21
3914 10326 5.860941 AGTGACCTATTCAAGATCGATGT 57.139 39.130 0.54 0.00 35.39 3.06
3917 10329 5.765677 CCTCTAGTGACCTATTCAAGATCGA 59.234 44.000 0.00 0.00 35.39 3.59
3919 10331 6.547880 TGTCCTCTAGTGACCTATTCAAGATC 59.452 42.308 11.06 0.00 35.39 2.75
3920 10332 6.436027 TGTCCTCTAGTGACCTATTCAAGAT 58.564 40.000 11.06 0.00 35.39 2.40
3921 10333 5.827756 TGTCCTCTAGTGACCTATTCAAGA 58.172 41.667 11.06 0.00 35.39 3.02
3924 10336 4.956700 CCTTGTCCTCTAGTGACCTATTCA 59.043 45.833 11.06 0.00 31.60 2.57
3925 10337 5.068067 GTCCTTGTCCTCTAGTGACCTATTC 59.932 48.000 11.06 0.00 31.60 1.75
3926 10338 4.957327 GTCCTTGTCCTCTAGTGACCTATT 59.043 45.833 11.06 0.00 31.60 1.73
3927 10339 4.538738 GTCCTTGTCCTCTAGTGACCTAT 58.461 47.826 11.06 0.00 31.60 2.57
3929 10341 2.810164 GTCCTTGTCCTCTAGTGACCT 58.190 52.381 11.06 0.00 31.60 3.85
3930 10342 1.473278 CGTCCTTGTCCTCTAGTGACC 59.527 57.143 11.06 0.00 31.60 4.02
3932 10344 1.174783 GCGTCCTTGTCCTCTAGTGA 58.825 55.000 0.00 0.00 0.00 3.41
3933 10345 0.173708 GGCGTCCTTGTCCTCTAGTG 59.826 60.000 0.00 0.00 0.00 2.74
3935 10347 1.433879 CGGCGTCCTTGTCCTCTAG 59.566 63.158 0.00 0.00 0.00 2.43
3936 10348 2.050350 CCGGCGTCCTTGTCCTCTA 61.050 63.158 6.01 0.00 0.00 2.43
3940 10352 4.778143 ATGCCGGCGTCCTTGTCC 62.778 66.667 23.90 0.00 0.00 4.02
3941 10353 3.499737 CATGCCGGCGTCCTTGTC 61.500 66.667 20.90 0.00 0.00 3.18
3951 10363 1.695114 TATGTCCCTCACCATGCCGG 61.695 60.000 0.00 0.00 42.50 6.13
3952 10364 0.532862 GTATGTCCCTCACCATGCCG 60.533 60.000 0.00 0.00 0.00 5.69
3954 10366 1.475751 CCAGTATGTCCCTCACCATGC 60.476 57.143 0.00 0.00 0.00 4.06
3956 10368 0.839946 GCCAGTATGTCCCTCACCAT 59.160 55.000 0.00 0.00 0.00 3.55
3957 10369 1.271840 GGCCAGTATGTCCCTCACCA 61.272 60.000 0.00 0.00 0.00 4.17
3959 10371 0.618458 TTGGCCAGTATGTCCCTCAC 59.382 55.000 5.11 0.00 0.00 3.51
3960 10372 0.911769 CTTGGCCAGTATGTCCCTCA 59.088 55.000 5.11 0.00 0.00 3.86
3961 10373 0.464554 GCTTGGCCAGTATGTCCCTC 60.465 60.000 5.11 0.00 0.00 4.30
3963 10375 1.032114 GTGCTTGGCCAGTATGTCCC 61.032 60.000 5.11 0.00 0.00 4.46
3964 10376 0.035056 AGTGCTTGGCCAGTATGTCC 60.035 55.000 5.11 0.00 0.00 4.02
3965 10377 1.470098 CAAGTGCTTGGCCAGTATGTC 59.530 52.381 5.11 0.00 36.95 3.06
3967 10379 1.825090 TCAAGTGCTTGGCCAGTATG 58.175 50.000 5.11 1.01 40.78 2.39
3969 10381 2.161855 CAATCAAGTGCTTGGCCAGTA 58.838 47.619 5.11 0.00 40.78 2.74
3972 10384 1.702182 TTCAATCAAGTGCTTGGCCA 58.298 45.000 0.00 0.00 40.78 5.36
3975 10387 5.296283 CCTCTAGATTCAATCAAGTGCTTGG 59.704 44.000 11.47 0.00 40.78 3.61
3976 10388 5.879223 ACCTCTAGATTCAATCAAGTGCTTG 59.121 40.000 0.00 5.63 41.71 4.01
3977 10389 6.059787 ACCTCTAGATTCAATCAAGTGCTT 57.940 37.500 0.00 0.00 0.00 3.91
3978 10390 5.690464 ACCTCTAGATTCAATCAAGTGCT 57.310 39.130 0.00 0.00 0.00 4.40
3979 10391 7.849804 TTTACCTCTAGATTCAATCAAGTGC 57.150 36.000 0.00 0.00 0.00 4.40
3980 10392 9.605275 TGATTTACCTCTAGATTCAATCAAGTG 57.395 33.333 0.00 0.00 0.00 3.16
3981 10393 9.829507 CTGATTTACCTCTAGATTCAATCAAGT 57.170 33.333 0.00 0.00 30.77 3.16
3983 10395 8.267183 TGCTGATTTACCTCTAGATTCAATCAA 58.733 33.333 0.00 3.29 30.77 2.57
3984 10396 7.712639 GTGCTGATTTACCTCTAGATTCAATCA 59.287 37.037 0.00 12.61 0.00 2.57
3985 10397 7.712639 TGTGCTGATTTACCTCTAGATTCAATC 59.287 37.037 0.00 0.55 0.00 2.67
3988 10400 6.544928 TGTGCTGATTTACCTCTAGATTCA 57.455 37.500 0.00 0.00 0.00 2.57
3989 10401 5.465056 GCTGTGCTGATTTACCTCTAGATTC 59.535 44.000 0.00 0.00 0.00 2.52
3990 10402 5.130145 AGCTGTGCTGATTTACCTCTAGATT 59.870 40.000 0.00 0.00 37.57 2.40
3991 10403 4.653341 AGCTGTGCTGATTTACCTCTAGAT 59.347 41.667 0.00 0.00 37.57 1.98
3993 10405 4.399004 AGCTGTGCTGATTTACCTCTAG 57.601 45.455 0.00 0.00 37.57 2.43
4006 10418 1.238439 AACGCATTAACAGCTGTGCT 58.762 45.000 22.49 8.39 40.77 4.40
4007 10419 1.715519 CAAACGCATTAACAGCTGTGC 59.284 47.619 22.49 18.18 0.00 4.57
4008 10420 2.998772 ACAAACGCATTAACAGCTGTG 58.001 42.857 22.49 9.07 0.00 3.66
4009 10421 3.708563 AACAAACGCATTAACAGCTGT 57.291 38.095 15.25 15.25 0.00 4.40
4010 10422 3.361917 GCAAACAAACGCATTAACAGCTG 60.362 43.478 13.48 13.48 0.00 4.24
4011 10423 2.794350 GCAAACAAACGCATTAACAGCT 59.206 40.909 0.90 0.00 0.00 4.24
4012 10424 2.537625 TGCAAACAAACGCATTAACAGC 59.462 40.909 0.00 0.00 31.95 4.40
4013 10425 3.796178 AGTGCAAACAAACGCATTAACAG 59.204 39.130 0.00 0.00 40.89 3.16
4014 10426 3.775202 AGTGCAAACAAACGCATTAACA 58.225 36.364 0.00 0.00 40.89 2.41
4015 10427 4.041723 AGAGTGCAAACAAACGCATTAAC 58.958 39.130 0.00 0.00 40.89 2.01
4016 10428 4.300189 AGAGTGCAAACAAACGCATTAA 57.700 36.364 0.00 0.00 40.89 1.40
4017 10429 3.980646 AGAGTGCAAACAAACGCATTA 57.019 38.095 0.00 0.00 40.89 1.90
4018 10430 2.869233 AGAGTGCAAACAAACGCATT 57.131 40.000 0.00 0.00 40.89 3.56
4019 10431 2.350772 GCTAGAGTGCAAACAAACGCAT 60.351 45.455 0.00 0.00 40.89 4.73
4020 10432 1.002900 GCTAGAGTGCAAACAAACGCA 60.003 47.619 0.00 0.00 35.30 5.24
4021 10433 1.264288 AGCTAGAGTGCAAACAAACGC 59.736 47.619 0.00 0.00 34.99 4.84
4022 10434 3.609103 AAGCTAGAGTGCAAACAAACG 57.391 42.857 0.00 0.00 34.99 3.60
4023 10435 4.672409 ACAAAGCTAGAGTGCAAACAAAC 58.328 39.130 0.00 0.00 34.99 2.93
4024 10436 4.640201 AGACAAAGCTAGAGTGCAAACAAA 59.360 37.500 0.00 0.00 34.99 2.83
4025 10437 4.199310 AGACAAAGCTAGAGTGCAAACAA 58.801 39.130 0.00 0.00 34.99 2.83
4026 10438 3.808728 AGACAAAGCTAGAGTGCAAACA 58.191 40.909 0.00 0.00 34.99 2.83
4027 10439 4.061596 AGAGACAAAGCTAGAGTGCAAAC 58.938 43.478 0.00 0.00 34.99 2.93
4028 10440 4.039730 AGAGAGACAAAGCTAGAGTGCAAA 59.960 41.667 0.00 0.00 34.99 3.68
4029 10441 3.576118 AGAGAGACAAAGCTAGAGTGCAA 59.424 43.478 0.00 0.00 34.99 4.08
4030 10442 3.161067 AGAGAGACAAAGCTAGAGTGCA 58.839 45.455 0.00 0.00 34.99 4.57
4031 10443 3.866883 AGAGAGACAAAGCTAGAGTGC 57.133 47.619 0.00 0.00 0.00 4.40
4032 10444 6.024552 AGAAAGAGAGACAAAGCTAGAGTG 57.975 41.667 0.00 0.00 0.00 3.51
4033 10445 6.493458 AGAAGAAAGAGAGACAAAGCTAGAGT 59.507 38.462 0.00 0.00 0.00 3.24
4034 10446 6.924111 AGAAGAAAGAGAGACAAAGCTAGAG 58.076 40.000 0.00 0.00 0.00 2.43
4035 10447 6.909550 AGAAGAAAGAGAGACAAAGCTAGA 57.090 37.500 0.00 0.00 0.00 2.43
4036 10448 7.961325 AAAGAAGAAAGAGAGACAAAGCTAG 57.039 36.000 0.00 0.00 0.00 3.42
4038 10450 6.825721 TCAAAAGAAGAAAGAGAGACAAAGCT 59.174 34.615 0.00 0.00 0.00 3.74
4043 10455 8.624776 GGAATTTCAAAAGAAGAAAGAGAGACA 58.375 33.333 0.00 0.00 38.27 3.41
4044 10456 8.079203 GGGAATTTCAAAAGAAGAAAGAGAGAC 58.921 37.037 0.00 0.00 38.27 3.36
4045 10457 8.001292 AGGGAATTTCAAAAGAAGAAAGAGAGA 58.999 33.333 0.00 0.00 38.27 3.10
4046 10458 8.175925 AGGGAATTTCAAAAGAAGAAAGAGAG 57.824 34.615 0.00 0.00 38.27 3.20
4056 10468 9.709495 CACAAATCATAAGGGAATTTCAAAAGA 57.291 29.630 0.00 0.00 0.00 2.52
4058 10470 9.709495 CTCACAAATCATAAGGGAATTTCAAAA 57.291 29.630 0.00 0.00 0.00 2.44
4059 10471 8.313292 CCTCACAAATCATAAGGGAATTTCAAA 58.687 33.333 0.00 0.00 0.00 2.69
4061 10473 7.408756 CCTCACAAATCATAAGGGAATTTCA 57.591 36.000 0.00 0.00 0.00 2.69
4069 10481 3.217626 GCCTCCCTCACAAATCATAAGG 58.782 50.000 0.00 0.00 0.00 2.69
4076 10488 1.355381 TCACATGCCTCCCTCACAAAT 59.645 47.619 0.00 0.00 0.00 2.32
4080 10492 1.747355 CAATTCACATGCCTCCCTCAC 59.253 52.381 0.00 0.00 0.00 3.51
4085 10497 3.624861 CAGAGTACAATTCACATGCCTCC 59.375 47.826 0.00 0.00 0.00 4.30
4089 10501 4.348656 CATGCAGAGTACAATTCACATGC 58.651 43.478 0.00 8.73 33.76 4.06
4095 10507 5.412594 TCACTTTCCATGCAGAGTACAATTC 59.587 40.000 0.00 0.00 0.00 2.17
4105 10517 7.769220 AGATAGATTTTTCACTTTCCATGCAG 58.231 34.615 0.00 0.00 0.00 4.41
4106 10518 7.707624 AGATAGATTTTTCACTTTCCATGCA 57.292 32.000 0.00 0.00 0.00 3.96
4107 10519 9.113838 TCTAGATAGATTTTTCACTTTCCATGC 57.886 33.333 0.00 0.00 0.00 4.06
4128 10540 9.481340 CGAATCCAAATGAGTGAATAATCTAGA 57.519 33.333 0.00 0.00 0.00 2.43
4130 10542 8.210946 ACCGAATCCAAATGAGTGAATAATCTA 58.789 33.333 0.00 0.00 0.00 1.98
4131 10543 7.056635 ACCGAATCCAAATGAGTGAATAATCT 58.943 34.615 0.00 0.00 0.00 2.40
4132 10544 7.264373 ACCGAATCCAAATGAGTGAATAATC 57.736 36.000 0.00 0.00 0.00 1.75
4133 10545 7.483307 CAACCGAATCCAAATGAGTGAATAAT 58.517 34.615 0.00 0.00 0.00 1.28
4135 10547 5.163663 GCAACCGAATCCAAATGAGTGAATA 60.164 40.000 0.00 0.00 0.00 1.75
4136 10548 4.380867 GCAACCGAATCCAAATGAGTGAAT 60.381 41.667 0.00 0.00 0.00 2.57
4140 10552 2.489329 CTGCAACCGAATCCAAATGAGT 59.511 45.455 0.00 0.00 0.00 3.41
4148 10573 2.042831 AGCTGCTGCAACCGAATCC 61.043 57.895 18.42 0.00 42.74 3.01
4153 10578 0.950555 TCTAACAGCTGCTGCAACCG 60.951 55.000 28.39 12.98 42.74 4.44
4154 10579 1.238439 TTCTAACAGCTGCTGCAACC 58.762 50.000 28.39 0.00 42.74 3.77
4161 10586 4.379918 GGGAACTTCATTTCTAACAGCTGC 60.380 45.833 15.27 0.00 0.00 5.25
4162 10587 5.006386 AGGGAACTTCATTTCTAACAGCTG 58.994 41.667 13.48 13.48 37.44 4.24
4183 10608 1.666054 GCATTGCTCCTCTCTCAAGG 58.334 55.000 0.16 0.00 37.81 3.61
4184 10609 1.288350 CGCATTGCTCCTCTCTCAAG 58.712 55.000 7.12 0.00 0.00 3.02
4185 10610 0.107993 CCGCATTGCTCCTCTCTCAA 60.108 55.000 7.12 0.00 0.00 3.02
4186 10611 1.519246 CCGCATTGCTCCTCTCTCA 59.481 57.895 7.12 0.00 0.00 3.27
4187 10612 1.227497 CCCGCATTGCTCCTCTCTC 60.227 63.158 7.12 0.00 0.00 3.20
4212 10637 4.141620 CCTTCCACAATACTACTGGCATCT 60.142 45.833 0.00 0.00 0.00 2.90
4214 10639 3.523564 ACCTTCCACAATACTACTGGCAT 59.476 43.478 0.00 0.00 0.00 4.40
4216 10641 3.055385 TGACCTTCCACAATACTACTGGC 60.055 47.826 0.00 0.00 0.00 4.85
4217 10642 4.819105 TGACCTTCCACAATACTACTGG 57.181 45.455 0.00 0.00 0.00 4.00
4218 10643 5.547465 TGTTGACCTTCCACAATACTACTG 58.453 41.667 0.00 0.00 0.00 2.74
4219 10644 5.542635 TCTGTTGACCTTCCACAATACTACT 59.457 40.000 0.00 0.00 0.00 2.57
4221 10646 6.620877 ATCTGTTGACCTTCCACAATACTA 57.379 37.500 0.00 0.00 0.00 1.82
4222 10647 4.974645 TCTGTTGACCTTCCACAATACT 57.025 40.909 0.00 0.00 0.00 2.12
4223 10648 6.381801 CAAATCTGTTGACCTTCCACAATAC 58.618 40.000 0.00 0.00 0.00 1.89
4224 10649 5.476599 CCAAATCTGTTGACCTTCCACAATA 59.523 40.000 0.00 0.00 0.00 1.90
4225 10650 4.281688 CCAAATCTGTTGACCTTCCACAAT 59.718 41.667 0.00 0.00 0.00 2.71
4226 10651 3.636300 CCAAATCTGTTGACCTTCCACAA 59.364 43.478 0.00 0.00 0.00 3.33
4227 10652 3.221771 CCAAATCTGTTGACCTTCCACA 58.778 45.455 0.00 0.00 0.00 4.17
4228 10653 2.029918 GCCAAATCTGTTGACCTTCCAC 60.030 50.000 0.00 0.00 0.00 4.02
4229 10654 2.238521 GCCAAATCTGTTGACCTTCCA 58.761 47.619 0.00 0.00 0.00 3.53
4230 10655 2.238521 TGCCAAATCTGTTGACCTTCC 58.761 47.619 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.