Multiple sequence alignment - TraesCS7D01G543900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G543900 chr7D 100.000 4515 0 0 1 4515 632017398 632021912 0.000000e+00 8338
1 TraesCS7D01G543900 chr7D 85.118 1485 209 11 3038 4515 621261059 621262538 0.000000e+00 1507
2 TraesCS7D01G543900 chr7D 84.000 1425 214 13 3070 4486 632143037 632144455 0.000000e+00 1356
3 TraesCS7D01G543900 chr7D 83.406 1139 180 6 961 2092 555047293 555048429 0.000000e+00 1048
4 TraesCS7D01G543900 chr7D 82.429 1161 181 13 922 2072 632141148 632142295 0.000000e+00 992
5 TraesCS7D01G543900 chr7D 93.088 651 30 10 1 641 394370403 394369758 0.000000e+00 939
6 TraesCS7D01G543900 chr7D 92.427 647 28 15 1 641 5555110 5555741 0.000000e+00 904
7 TraesCS7D01G543900 chr7D 96.846 539 12 4 1 534 184175033 184174495 0.000000e+00 896
8 TraesCS7D01G543900 chr7D 96.497 314 7 1 366 675 632010839 632011152 2.410000e-142 516
9 TraesCS7D01G543900 chr7D 91.391 302 25 1 2424 2724 575501719 575502020 3.250000e-111 412
10 TraesCS7D01G543900 chr7A 92.673 1747 78 17 703 2419 736429801 736428075 0.000000e+00 2471
11 TraesCS7D01G543900 chr7A 83.299 1461 228 15 3044 4495 736094420 736092967 0.000000e+00 1332
12 TraesCS7D01G543900 chr7A 83.968 1391 210 11 3106 4490 735962494 735963877 0.000000e+00 1321
13 TraesCS7D01G543900 chr7A 83.059 1458 233 11 3041 4490 736006616 736005165 0.000000e+00 1312
14 TraesCS7D01G543900 chr7A 84.273 1100 166 2 970 2066 736329503 736328408 0.000000e+00 1066
15 TraesCS7D01G543900 chr7A 92.669 682 24 7 1 677 702972682 702973342 0.000000e+00 959
16 TraesCS7D01G543900 chr7A 89.577 307 28 3 2419 2724 73745888 73745585 1.970000e-103 387
17 TraesCS7D01G543900 chr7A 99.219 128 1 0 2829 2956 319588859 319588732 9.770000e-57 231
18 TraesCS7D01G543900 chr7A 95.000 140 6 1 2824 2962 348209737 348209598 7.600000e-53 219
19 TraesCS7D01G543900 chr7A 93.706 143 8 1 2814 2956 504961203 504961062 3.540000e-51 213
20 TraesCS7D01G543900 chr7A 94.030 67 2 2 2731 2796 736428066 736428001 2.870000e-17 100
21 TraesCS7D01G543900 chr1B 85.635 1441 198 6 3079 4515 577925980 577924545 0.000000e+00 1506
22 TraesCS7D01G543900 chr1B 85.270 1317 180 7 790 2105 577928990 577927687 0.000000e+00 1345
23 TraesCS7D01G543900 chr1B 97.037 135 4 0 2829 2963 543038902 543038768 1.260000e-55 228
24 TraesCS7D01G543900 chr1B 93.431 137 9 0 2819 2955 172000102 172000238 2.130000e-48 204
25 TraesCS7D01G543900 chr7B 84.505 1465 213 8 3035 4490 744209495 744210954 0.000000e+00 1435
26 TraesCS7D01G543900 chr7B 84.732 1382 195 13 3129 4502 744337222 744335849 0.000000e+00 1369
27 TraesCS7D01G543900 chr7B 83.529 1445 216 20 3079 4510 747526070 747524635 0.000000e+00 1330
28 TraesCS7D01G543900 chr7B 84.049 1072 165 3 997 2065 744295076 744294008 0.000000e+00 1027
29 TraesCS7D01G543900 chr7B 81.738 1254 207 16 865 2102 747528857 747527610 0.000000e+00 1027
30 TraesCS7D01G543900 chr7B 82.717 1163 180 10 957 2110 745230122 745231272 0.000000e+00 1014
31 TraesCS7D01G543900 chr7B 83.229 1121 171 12 939 2049 743650547 743651660 0.000000e+00 1013
32 TraesCS7D01G543900 chr7B 96.124 129 5 0 2827 2955 55863196 55863068 1.270000e-50 211
33 TraesCS7D01G543900 chr1A 92.364 681 25 8 1 675 557470042 557469383 0.000000e+00 944
34 TraesCS7D01G543900 chr6D 92.934 651 30 11 1 641 338805457 338806101 0.000000e+00 933
35 TraesCS7D01G543900 chr6D 92.791 652 29 13 1 641 4301427 4300783 0.000000e+00 928
36 TraesCS7D01G543900 chr2D 92.934 651 30 11 1 641 377139327 377138683 0.000000e+00 933
37 TraesCS7D01G543900 chr2D 96.289 539 15 4 1 534 286990613 286991151 0.000000e+00 880
38 TraesCS7D01G543900 chr2D 91.054 313 27 1 2416 2727 494586874 494586562 5.400000e-114 422
39 TraesCS7D01G543900 chr2D 91.089 303 27 0 2427 2729 425717899 425718201 1.170000e-110 411
40 TraesCS7D01G543900 chr2D 94.406 143 6 2 2829 2969 619720546 619720688 7.600000e-53 219
41 TraesCS7D01G543900 chr5D 92.331 652 34 11 1 641 334927532 334926886 0.000000e+00 913
42 TraesCS7D01G543900 chr5D 90.789 304 22 3 2428 2729 360763279 360762980 7.040000e-108 401
43 TraesCS7D01G543900 chr5D 90.728 302 27 1 2427 2727 497699144 497698843 7.040000e-108 401
44 TraesCS7D01G543900 chr6B 90.580 690 29 7 1 675 292799945 292800613 0.000000e+00 881
45 TraesCS7D01G543900 chr6B 85.762 604 33 21 82 675 177727185 177726625 1.400000e-164 590
46 TraesCS7D01G543900 chr6B 97.452 314 3 2 366 675 292795117 292795429 8.600000e-147 531
47 TraesCS7D01G543900 chr6B 96.403 139 4 1 2826 2963 159156795 159156933 1.260000e-55 228
48 TraesCS7D01G543900 chr6B 94.521 146 5 2 2828 2970 341467301 341467156 5.880000e-54 222
49 TraesCS7D01G543900 chr1D 91.821 648 21 15 1 641 441021795 441021173 0.000000e+00 874
50 TraesCS7D01G543900 chr1D 94.776 134 6 1 2822 2955 202557759 202557891 1.650000e-49 207
51 TraesCS7D01G543900 chr2B 89.377 706 25 12 1 677 382242764 382243448 0.000000e+00 843
52 TraesCS7D01G543900 chr2B 98.780 164 2 0 512 675 798918412 798918249 4.420000e-75 292
53 TraesCS7D01G543900 chr2B 94.030 134 8 0 2822 2955 691778161 691778294 2.130000e-48 204
54 TraesCS7D01G543900 chr4A 89.266 708 24 19 1 677 601302192 601302878 0.000000e+00 839
55 TraesCS7D01G543900 chr3B 86.125 591 32 19 1 582 67391850 67391301 3.890000e-165 592
56 TraesCS7D01G543900 chr3B 89.677 310 28 3 2419 2727 783455729 783455423 4.230000e-105 392
57 TraesCS7D01G543900 chr3B 95.620 137 6 0 2824 2960 709011869 709011733 2.110000e-53 220
58 TraesCS7D01G543900 chr3A 90.228 307 30 0 2418 2724 143376949 143376643 7.040000e-108 401
59 TraesCS7D01G543900 chr3A 94.815 135 7 0 2821 2955 328930964 328931098 1.270000e-50 211
60 TraesCS7D01G543900 chr3D 90.196 306 27 3 2419 2722 595214273 595213969 3.270000e-106 396
61 TraesCS7D01G543900 chr5A 96.571 175 3 2 512 686 631529712 631529883 2.060000e-73 287
62 TraesCS7D01G543900 chrUn 98.450 129 2 0 2829 2957 34537829 34537957 1.260000e-55 228
63 TraesCS7D01G543900 chrUn 93.571 140 7 1 2816 2955 150797780 150797917 1.650000e-49 207
64 TraesCS7D01G543900 chr4D 94.483 145 8 0 2826 2970 425527815 425527671 1.630000e-54 224
65 TraesCS7D01G543900 chr5B 92.908 141 8 2 2822 2960 621465054 621464914 2.130000e-48 204
66 TraesCS7D01G543900 chr5B 90.667 150 12 2 2820 2969 412805675 412805822 9.910000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G543900 chr7D 632017398 632021912 4514 False 8338.0 8338 100.0000 1 4515 1 chr7D.!!$F6 4514
1 TraesCS7D01G543900 chr7D 621261059 621262538 1479 False 1507.0 1507 85.1180 3038 4515 1 chr7D.!!$F4 1477
2 TraesCS7D01G543900 chr7D 632141148 632144455 3307 False 1174.0 1356 83.2145 922 4486 2 chr7D.!!$F7 3564
3 TraesCS7D01G543900 chr7D 555047293 555048429 1136 False 1048.0 1048 83.4060 961 2092 1 chr7D.!!$F2 1131
4 TraesCS7D01G543900 chr7D 394369758 394370403 645 True 939.0 939 93.0880 1 641 1 chr7D.!!$R2 640
5 TraesCS7D01G543900 chr7D 5555110 5555741 631 False 904.0 904 92.4270 1 641 1 chr7D.!!$F1 640
6 TraesCS7D01G543900 chr7D 184174495 184175033 538 True 896.0 896 96.8460 1 534 1 chr7D.!!$R1 533
7 TraesCS7D01G543900 chr7A 736092967 736094420 1453 True 1332.0 1332 83.2990 3044 4495 1 chr7A.!!$R6 1451
8 TraesCS7D01G543900 chr7A 735962494 735963877 1383 False 1321.0 1321 83.9680 3106 4490 1 chr7A.!!$F2 1384
9 TraesCS7D01G543900 chr7A 736005165 736006616 1451 True 1312.0 1312 83.0590 3041 4490 1 chr7A.!!$R5 1449
10 TraesCS7D01G543900 chr7A 736428001 736429801 1800 True 1285.5 2471 93.3515 703 2796 2 chr7A.!!$R8 2093
11 TraesCS7D01G543900 chr7A 736328408 736329503 1095 True 1066.0 1066 84.2730 970 2066 1 chr7A.!!$R7 1096
12 TraesCS7D01G543900 chr7A 702972682 702973342 660 False 959.0 959 92.6690 1 677 1 chr7A.!!$F1 676
13 TraesCS7D01G543900 chr1B 577924545 577928990 4445 True 1425.5 1506 85.4525 790 4515 2 chr1B.!!$R2 3725
14 TraesCS7D01G543900 chr7B 744209495 744210954 1459 False 1435.0 1435 84.5050 3035 4490 1 chr7B.!!$F2 1455
15 TraesCS7D01G543900 chr7B 744335849 744337222 1373 True 1369.0 1369 84.7320 3129 4502 1 chr7B.!!$R3 1373
16 TraesCS7D01G543900 chr7B 747524635 747528857 4222 True 1178.5 1330 82.6335 865 4510 2 chr7B.!!$R4 3645
17 TraesCS7D01G543900 chr7B 744294008 744295076 1068 True 1027.0 1027 84.0490 997 2065 1 chr7B.!!$R2 1068
18 TraesCS7D01G543900 chr7B 745230122 745231272 1150 False 1014.0 1014 82.7170 957 2110 1 chr7B.!!$F3 1153
19 TraesCS7D01G543900 chr7B 743650547 743651660 1113 False 1013.0 1013 83.2290 939 2049 1 chr7B.!!$F1 1110
20 TraesCS7D01G543900 chr1A 557469383 557470042 659 True 944.0 944 92.3640 1 675 1 chr1A.!!$R1 674
21 TraesCS7D01G543900 chr6D 338805457 338806101 644 False 933.0 933 92.9340 1 641 1 chr6D.!!$F1 640
22 TraesCS7D01G543900 chr6D 4300783 4301427 644 True 928.0 928 92.7910 1 641 1 chr6D.!!$R1 640
23 TraesCS7D01G543900 chr2D 377138683 377139327 644 True 933.0 933 92.9340 1 641 1 chr2D.!!$R1 640
24 TraesCS7D01G543900 chr2D 286990613 286991151 538 False 880.0 880 96.2890 1 534 1 chr2D.!!$F1 533
25 TraesCS7D01G543900 chr5D 334926886 334927532 646 True 913.0 913 92.3310 1 641 1 chr5D.!!$R1 640
26 TraesCS7D01G543900 chr6B 292799945 292800613 668 False 881.0 881 90.5800 1 675 1 chr6B.!!$F3 674
27 TraesCS7D01G543900 chr6B 177726625 177727185 560 True 590.0 590 85.7620 82 675 1 chr6B.!!$R1 593
28 TraesCS7D01G543900 chr1D 441021173 441021795 622 True 874.0 874 91.8210 1 641 1 chr1D.!!$R1 640
29 TraesCS7D01G543900 chr2B 382242764 382243448 684 False 843.0 843 89.3770 1 677 1 chr2B.!!$F1 676
30 TraesCS7D01G543900 chr4A 601302192 601302878 686 False 839.0 839 89.2660 1 677 1 chr4A.!!$F1 676
31 TraesCS7D01G543900 chr3B 67391301 67391850 549 True 592.0 592 86.1250 1 582 1 chr3B.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 814 0.247497 CGTCTTCTCTCTGTCGCGAG 60.247 60.0 10.24 0.0 0.0 5.03 F
761 853 0.960364 GGAGCAGGCGATTTGGTTCA 60.960 55.0 0.00 0.0 0.0 3.18 F
2489 3693 0.040692 GTTTCGTTTGGTCCCGCTTC 60.041 55.0 0.00 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 3674 0.040692 GAAGCGGGACCAAACGAAAC 60.041 55.0 0.00 0.0 0.00 2.78 R
2540 3744 0.107654 GATGGACTTCCTCCGTTGGG 60.108 60.0 0.00 0.0 43.03 4.12 R
4129 6223 0.397535 AATCACCATCCATGTGGGCC 60.398 55.0 7.24 0.0 43.77 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 249 2.560954 CTGCTCGACAGTCCAGAGA 58.439 57.895 9.10 0.00 41.86 3.10
268 274 1.267121 GAGGTAACCAGAGGCAGACA 58.733 55.000 0.00 0.00 37.17 3.41
295 301 2.509336 CTGCTACCGACTTGGGCG 60.509 66.667 0.00 0.00 44.64 6.13
348 354 6.064717 GGAAATGCTCAGGGTACAAGATAAT 58.935 40.000 0.00 0.00 0.00 1.28
677 769 5.651530 AGTACACAGACTTATCCATCAACG 58.348 41.667 0.00 0.00 0.00 4.10
678 770 4.537135 ACACAGACTTATCCATCAACGT 57.463 40.909 0.00 0.00 0.00 3.99
679 771 4.894784 ACACAGACTTATCCATCAACGTT 58.105 39.130 0.00 0.00 0.00 3.99
680 772 4.690748 ACACAGACTTATCCATCAACGTTG 59.309 41.667 22.35 22.35 0.00 4.10
681 773 3.684788 ACAGACTTATCCATCAACGTTGC 59.315 43.478 23.47 5.32 0.00 4.17
682 774 3.063997 CAGACTTATCCATCAACGTTGCC 59.936 47.826 23.47 2.53 0.00 4.52
683 775 3.055094 AGACTTATCCATCAACGTTGCCT 60.055 43.478 23.47 10.23 0.00 4.75
684 776 3.686016 ACTTATCCATCAACGTTGCCTT 58.314 40.909 23.47 7.84 0.00 4.35
685 777 3.689649 ACTTATCCATCAACGTTGCCTTC 59.310 43.478 23.47 0.00 0.00 3.46
686 778 1.086696 ATCCATCAACGTTGCCTTCG 58.913 50.000 23.47 8.98 0.00 3.79
687 779 1.154225 CCATCAACGTTGCCTTCGC 60.154 57.895 23.47 0.00 0.00 4.70
688 780 1.509787 CATCAACGTTGCCTTCGCG 60.510 57.895 23.47 0.00 38.08 5.87
689 781 3.308878 ATCAACGTTGCCTTCGCGC 62.309 57.895 23.47 0.00 38.08 6.86
716 808 0.962489 CCACCACGTCTTCTCTCTGT 59.038 55.000 0.00 0.00 0.00 3.41
719 811 0.455295 CCACGTCTTCTCTCTGTCGC 60.455 60.000 0.00 0.00 0.00 5.19
720 812 0.791238 CACGTCTTCTCTCTGTCGCG 60.791 60.000 0.00 0.00 0.00 5.87
721 813 0.949588 ACGTCTTCTCTCTGTCGCGA 60.950 55.000 3.71 3.71 0.00 5.87
722 814 0.247497 CGTCTTCTCTCTGTCGCGAG 60.247 60.000 10.24 0.00 0.00 5.03
724 816 1.080298 TCTTCTCTCTGTCGCGAGTC 58.920 55.000 10.24 0.00 32.83 3.36
756 848 2.125147 TCGGGAGCAGGCGATTTG 60.125 61.111 0.00 0.00 0.00 2.32
761 853 0.960364 GGAGCAGGCGATTTGGTTCA 60.960 55.000 0.00 0.00 0.00 3.18
769 861 2.749621 GGCGATTTGGTTCAACTGAGAT 59.250 45.455 0.00 0.00 0.00 2.75
779 871 5.049474 TGGTTCAACTGAGATTCACAAATCG 60.049 40.000 0.00 0.00 45.01 3.34
780 872 5.385617 GTTCAACTGAGATTCACAAATCGG 58.614 41.667 0.00 0.00 45.01 4.18
862 975 3.445096 CCATCCATCTCAAAGGTTGGTTC 59.555 47.826 0.00 0.00 39.09 3.62
995 1126 6.424812 AGCAAAATCCAGCAAGTTCAATTAAC 59.575 34.615 0.00 0.00 38.46 2.01
1033 1164 2.094078 GCATTTGCATTCTACTTGGGCA 60.094 45.455 0.00 0.00 41.59 5.36
1107 1238 1.407437 GGCGAGATTGACAAGATGGGT 60.407 52.381 0.00 0.00 0.00 4.51
1332 1466 4.012374 TGAGAAATCCCTTTCATGCTCAC 58.988 43.478 0.00 0.00 42.71 3.51
1481 1621 2.839632 TGATCCCAGCCGCGAGAT 60.840 61.111 8.23 1.00 0.00 2.75
1551 1697 2.035632 GATACTAGAGCACTGGTGGCT 58.964 52.381 10.36 0.00 46.07 4.75
1584 1741 1.271597 ACAAGTGAGGAGGTCAATGGC 60.272 52.381 0.00 0.00 36.74 4.40
1585 1742 1.067295 AAGTGAGGAGGTCAATGGCA 58.933 50.000 0.00 0.00 36.74 4.92
1586 1743 1.067295 AGTGAGGAGGTCAATGGCAA 58.933 50.000 0.00 0.00 36.74 4.52
1587 1744 1.425066 AGTGAGGAGGTCAATGGCAAA 59.575 47.619 0.00 0.00 36.74 3.68
1588 1745 2.158475 AGTGAGGAGGTCAATGGCAAAA 60.158 45.455 0.00 0.00 36.74 2.44
1589 1746 2.827921 GTGAGGAGGTCAATGGCAAAAT 59.172 45.455 0.00 0.00 36.74 1.82
1590 1747 3.091545 TGAGGAGGTCAATGGCAAAATC 58.908 45.455 0.00 0.00 29.64 2.17
1591 1748 3.091545 GAGGAGGTCAATGGCAAAATCA 58.908 45.455 0.00 0.00 0.00 2.57
1592 1749 3.703052 GAGGAGGTCAATGGCAAAATCAT 59.297 43.478 0.00 0.00 0.00 2.45
1593 1750 3.449737 AGGAGGTCAATGGCAAAATCATG 59.550 43.478 0.00 0.00 0.00 3.07
1594 1751 3.431207 GGAGGTCAATGGCAAAATCATGG 60.431 47.826 0.00 0.00 0.00 3.66
1682 1839 1.341383 GGCCATCCAAGGTGAGTTCAT 60.341 52.381 0.00 0.00 0.00 2.57
2335 3342 3.221964 GCATGGTGCTAAACAAGGAAG 57.778 47.619 0.00 0.00 40.96 3.46
2337 3344 3.612479 GCATGGTGCTAAACAAGGAAGTG 60.612 47.826 0.00 0.00 40.96 3.16
2394 3598 4.314961 TGTTGCTACATAACACACTGAGG 58.685 43.478 0.00 0.00 33.43 3.86
2399 3603 5.238432 TGCTACATAACACACTGAGGTTTTG 59.762 40.000 0.00 0.00 33.83 2.44
2412 3616 3.181470 TGAGGTTTTGTTTTGCTAAGCCC 60.181 43.478 0.00 0.00 34.75 5.19
2420 3624 5.385509 TGTTTTGCTAAGCCCAAGTAATC 57.614 39.130 0.00 0.00 0.00 1.75
2422 3626 6.242396 TGTTTTGCTAAGCCCAAGTAATCTA 58.758 36.000 0.00 0.00 0.00 1.98
2424 3628 8.050325 TGTTTTGCTAAGCCCAAGTAATCTATA 58.950 33.333 0.00 0.00 0.00 1.31
2425 3629 8.343366 GTTTTGCTAAGCCCAAGTAATCTATAC 58.657 37.037 0.00 0.00 0.00 1.47
2426 3630 6.110411 TGCTAAGCCCAAGTAATCTATACC 57.890 41.667 0.00 0.00 0.00 2.73
2427 3631 5.844516 TGCTAAGCCCAAGTAATCTATACCT 59.155 40.000 0.00 0.00 0.00 3.08
2428 3632 7.014449 TGCTAAGCCCAAGTAATCTATACCTA 58.986 38.462 0.00 0.00 0.00 3.08
2429 3633 7.678598 TGCTAAGCCCAAGTAATCTATACCTAT 59.321 37.037 0.00 0.00 0.00 2.57
2430 3634 9.198475 GCTAAGCCCAAGTAATCTATACCTATA 57.802 37.037 0.00 0.00 0.00 1.31
2432 3636 7.974730 AGCCCAAGTAATCTATACCTATACC 57.025 40.000 0.00 0.00 0.00 2.73
2433 3637 7.720412 AGCCCAAGTAATCTATACCTATACCT 58.280 38.462 0.00 0.00 0.00 3.08
2434 3638 8.853912 AGCCCAAGTAATCTATACCTATACCTA 58.146 37.037 0.00 0.00 0.00 3.08
2435 3639 8.911965 GCCCAAGTAATCTATACCTATACCTAC 58.088 40.741 0.00 0.00 0.00 3.18
2448 3652 9.771140 ATACCTATACCTACTATCAAAGGGAAG 57.229 37.037 0.00 0.00 37.18 3.46
2449 3653 7.602868 ACCTATACCTACTATCAAAGGGAAGT 58.397 38.462 0.00 0.00 37.18 3.01
2450 3654 7.509659 ACCTATACCTACTATCAAAGGGAAGTG 59.490 40.741 0.00 0.00 37.18 3.16
2451 3655 7.728981 CCTATACCTACTATCAAAGGGAAGTGA 59.271 40.741 0.00 0.00 37.18 3.41
2452 3656 9.315363 CTATACCTACTATCAAAGGGAAGTGAT 57.685 37.037 0.00 0.00 37.18 3.06
2454 3658 9.845214 ATACCTACTATCAAAGGGAAGTGATAT 57.155 33.333 0.00 0.00 36.42 1.63
2455 3659 8.568617 ACCTACTATCAAAGGGAAGTGATATT 57.431 34.615 0.00 0.00 36.42 1.28
2456 3660 8.652290 ACCTACTATCAAAGGGAAGTGATATTC 58.348 37.037 0.00 0.00 36.42 1.75
2457 3661 8.875168 CCTACTATCAAAGGGAAGTGATATTCT 58.125 37.037 0.00 0.00 36.42 2.40
2459 3663 8.970859 ACTATCAAAGGGAAGTGATATTCTTG 57.029 34.615 0.00 0.00 36.42 3.02
2460 3664 7.995488 ACTATCAAAGGGAAGTGATATTCTTGG 59.005 37.037 0.00 0.00 36.42 3.61
2461 3665 6.139679 TCAAAGGGAAGTGATATTCTTGGT 57.860 37.500 0.00 0.00 0.00 3.67
2462 3666 6.552008 TCAAAGGGAAGTGATATTCTTGGTT 58.448 36.000 0.00 0.00 0.00 3.67
2463 3667 7.010160 TCAAAGGGAAGTGATATTCTTGGTTT 58.990 34.615 0.00 0.00 0.00 3.27
2464 3668 7.176690 TCAAAGGGAAGTGATATTCTTGGTTTC 59.823 37.037 0.00 0.00 0.00 2.78
2465 3669 5.186198 AGGGAAGTGATATTCTTGGTTTCG 58.814 41.667 0.00 0.00 0.00 3.46
2466 3670 4.941873 GGGAAGTGATATTCTTGGTTTCGT 59.058 41.667 0.00 0.00 0.00 3.85
2467 3671 5.064834 GGGAAGTGATATTCTTGGTTTCGTC 59.935 44.000 0.00 0.00 0.00 4.20
2468 3672 5.064834 GGAAGTGATATTCTTGGTTTCGTCC 59.935 44.000 0.00 0.00 0.00 4.79
2469 3673 4.514401 AGTGATATTCTTGGTTTCGTCCC 58.486 43.478 0.00 0.00 0.00 4.46
2470 3674 3.308866 GTGATATTCTTGGTTTCGTCCCG 59.691 47.826 0.00 0.00 0.00 5.14
2471 3675 3.055675 TGATATTCTTGGTTTCGTCCCGT 60.056 43.478 0.00 0.00 0.00 5.28
2472 3676 2.265589 ATTCTTGGTTTCGTCCCGTT 57.734 45.000 0.00 0.00 0.00 4.44
2473 3677 2.041251 TTCTTGGTTTCGTCCCGTTT 57.959 45.000 0.00 0.00 0.00 3.60
2474 3678 1.585297 TCTTGGTTTCGTCCCGTTTC 58.415 50.000 0.00 0.00 0.00 2.78
2475 3679 0.233848 CTTGGTTTCGTCCCGTTTCG 59.766 55.000 0.00 0.00 0.00 3.46
2476 3680 0.461693 TTGGTTTCGTCCCGTTTCGT 60.462 50.000 0.00 0.00 0.00 3.85
2477 3681 0.461693 TGGTTTCGTCCCGTTTCGTT 60.462 50.000 0.00 0.00 0.00 3.85
2478 3682 0.657312 GGTTTCGTCCCGTTTCGTTT 59.343 50.000 0.00 0.00 0.00 3.60
2479 3683 1.595246 GGTTTCGTCCCGTTTCGTTTG 60.595 52.381 0.00 0.00 0.00 2.93
2480 3684 0.656785 TTTCGTCCCGTTTCGTTTGG 59.343 50.000 0.00 0.00 0.00 3.28
2481 3685 0.461693 TTCGTCCCGTTTCGTTTGGT 60.462 50.000 0.00 0.00 0.00 3.67
2482 3686 0.875474 TCGTCCCGTTTCGTTTGGTC 60.875 55.000 0.00 0.00 0.00 4.02
2483 3687 1.834458 CGTCCCGTTTCGTTTGGTCC 61.834 60.000 0.00 0.00 0.00 4.46
2484 3688 1.227913 TCCCGTTTCGTTTGGTCCC 60.228 57.895 0.00 0.00 0.00 4.46
2485 3689 2.609759 CCCGTTTCGTTTGGTCCCG 61.610 63.158 0.00 0.00 0.00 5.14
2486 3690 2.250190 CGTTTCGTTTGGTCCCGC 59.750 61.111 0.00 0.00 0.00 6.13
2487 3691 2.248835 CGTTTCGTTTGGTCCCGCT 61.249 57.895 0.00 0.00 0.00 5.52
2488 3692 1.778027 CGTTTCGTTTGGTCCCGCTT 61.778 55.000 0.00 0.00 0.00 4.68
2489 3693 0.040692 GTTTCGTTTGGTCCCGCTTC 60.041 55.000 0.00 0.00 0.00 3.86
2490 3694 0.464013 TTTCGTTTGGTCCCGCTTCA 60.464 50.000 0.00 0.00 0.00 3.02
2491 3695 0.464013 TTCGTTTGGTCCCGCTTCAA 60.464 50.000 0.00 0.00 0.00 2.69
2492 3696 0.250553 TCGTTTGGTCCCGCTTCAAT 60.251 50.000 0.00 0.00 0.00 2.57
2493 3697 0.596082 CGTTTGGTCCCGCTTCAATT 59.404 50.000 0.00 0.00 0.00 2.32
2494 3698 1.807742 CGTTTGGTCCCGCTTCAATTA 59.192 47.619 0.00 0.00 0.00 1.40
2495 3699 2.226912 CGTTTGGTCCCGCTTCAATTAA 59.773 45.455 0.00 0.00 0.00 1.40
2496 3700 3.119637 CGTTTGGTCCCGCTTCAATTAAT 60.120 43.478 0.00 0.00 0.00 1.40
2501 3705 4.082463 TGGTCCCGCTTCAATTAATTTCAC 60.082 41.667 0.00 0.00 0.00 3.18
2503 3707 5.394115 GGTCCCGCTTCAATTAATTTCACAT 60.394 40.000 0.00 0.00 0.00 3.21
2506 3710 5.681105 CCCGCTTCAATTAATTTCACATACG 59.319 40.000 0.00 0.00 0.00 3.06
2508 3712 5.965334 CGCTTCAATTAATTTCACATACGCT 59.035 36.000 0.00 0.00 0.00 5.07
2511 3715 9.450807 GCTTCAATTAATTTCACATACGCTATT 57.549 29.630 0.00 0.00 0.00 1.73
2519 3723 7.719689 ATTTCACATACGCTATTTTGTTTCG 57.280 32.000 0.00 0.00 0.00 3.46
2521 3725 6.230849 TCACATACGCTATTTTGTTTCGTT 57.769 33.333 0.00 0.00 34.97 3.85
2522 3726 7.348808 TCACATACGCTATTTTGTTTCGTTA 57.651 32.000 0.00 0.00 34.97 3.18
2523 3727 7.228840 TCACATACGCTATTTTGTTTCGTTAC 58.771 34.615 0.00 0.00 34.97 2.50
2524 3728 7.116662 TCACATACGCTATTTTGTTTCGTTACT 59.883 33.333 0.00 0.00 34.97 2.24
2525 3729 7.742963 CACATACGCTATTTTGTTTCGTTACTT 59.257 33.333 0.00 0.00 34.97 2.24
2526 3730 7.742963 ACATACGCTATTTTGTTTCGTTACTTG 59.257 33.333 0.00 0.00 34.97 3.16
2527 3731 4.907582 ACGCTATTTTGTTTCGTTACTTGC 59.092 37.500 0.00 0.00 0.00 4.01
2528 3732 4.319901 CGCTATTTTGTTTCGTTACTTGCC 59.680 41.667 0.00 0.00 0.00 4.52
2530 3734 5.116528 GCTATTTTGTTTCGTTACTTGCCAC 59.883 40.000 0.00 0.00 0.00 5.01
2531 3735 3.423996 TTTGTTTCGTTACTTGCCACC 57.576 42.857 0.00 0.00 0.00 4.61
2532 3736 1.310904 TGTTTCGTTACTTGCCACCC 58.689 50.000 0.00 0.00 0.00 4.61
2533 3737 0.236449 GTTTCGTTACTTGCCACCCG 59.764 55.000 0.00 0.00 0.00 5.28
2535 3739 0.179051 TTCGTTACTTGCCACCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
2536 3740 0.179051 TCGTTACTTGCCACCCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
2538 3742 1.872313 CGTTACTTGCCACCCGTTTTA 59.128 47.619 0.00 0.00 0.00 1.52
2540 3744 1.525941 TACTTGCCACCCGTTTTAGC 58.474 50.000 0.00 0.00 0.00 3.09
2541 3745 1.176619 ACTTGCCACCCGTTTTAGCC 61.177 55.000 0.00 0.00 0.00 3.93
2542 3746 1.873270 CTTGCCACCCGTTTTAGCCC 61.873 60.000 0.00 0.00 0.00 5.19
2543 3747 2.282603 GCCACCCGTTTTAGCCCA 60.283 61.111 0.00 0.00 0.00 5.36
2544 3748 1.904378 GCCACCCGTTTTAGCCCAA 60.904 57.895 0.00 0.00 0.00 4.12
2545 3749 1.961378 CCACCCGTTTTAGCCCAAC 59.039 57.895 0.00 0.00 0.00 3.77
2546 3750 1.577421 CACCCGTTTTAGCCCAACG 59.423 57.895 5.84 5.84 45.35 4.10
2550 3754 2.168054 CGTTTTAGCCCAACGGAGG 58.832 57.895 5.06 0.00 42.68 4.30
2551 3755 0.320946 CGTTTTAGCCCAACGGAGGA 60.321 55.000 5.06 0.00 42.68 3.71
2552 3756 1.878948 CGTTTTAGCCCAACGGAGGAA 60.879 52.381 5.06 0.00 42.68 3.36
2553 3757 1.810755 GTTTTAGCCCAACGGAGGAAG 59.189 52.381 0.00 0.00 0.00 3.46
2554 3758 1.061546 TTTAGCCCAACGGAGGAAGT 58.938 50.000 0.00 0.00 0.00 3.01
2555 3759 0.611714 TTAGCCCAACGGAGGAAGTC 59.388 55.000 0.00 0.00 0.00 3.01
2556 3760 1.262640 TAGCCCAACGGAGGAAGTCC 61.263 60.000 0.00 0.00 42.85 3.85
2564 3768 1.144936 GGAGGAAGTCCATCTGGCG 59.855 63.158 0.00 0.00 46.10 5.69
2565 3769 1.144936 GAGGAAGTCCATCTGGCGG 59.855 63.158 0.00 0.00 38.89 6.13
2566 3770 2.514824 GGAAGTCCATCTGGCGGC 60.515 66.667 0.00 0.00 35.64 6.53
2567 3771 2.892425 GAAGTCCATCTGGCGGCG 60.892 66.667 0.51 0.51 34.44 6.46
2583 3787 4.954970 CGCACTGTGGCCCAGGTT 62.955 66.667 20.97 3.14 46.06 3.50
2584 3788 2.985847 GCACTGTGGCCCAGGTTC 60.986 66.667 20.97 9.04 46.06 3.62
2585 3789 2.515398 CACTGTGGCCCAGGTTCA 59.485 61.111 20.97 2.85 46.06 3.18
2586 3790 1.152777 CACTGTGGCCCAGGTTCAA 60.153 57.895 20.97 0.00 46.06 2.69
2599 3803 6.714810 GGCCCAGGTTCAAAGAAAAATAAAAT 59.285 34.615 0.00 0.00 0.00 1.82
2600 3804 7.230510 GGCCCAGGTTCAAAGAAAAATAAAATT 59.769 33.333 0.00 0.00 0.00 1.82
2601 3805 8.075574 GCCCAGGTTCAAAGAAAAATAAAATTG 58.924 33.333 0.00 0.00 0.00 2.32
2602 3806 8.075574 CCCAGGTTCAAAGAAAAATAAAATTGC 58.924 33.333 0.00 0.00 0.00 3.56
2603 3807 8.075574 CCAGGTTCAAAGAAAAATAAAATTGCC 58.924 33.333 0.00 0.00 0.00 4.52
2604 3808 7.798052 CAGGTTCAAAGAAAAATAAAATTGCCG 59.202 33.333 0.00 0.00 0.00 5.69
2605 3809 7.713073 AGGTTCAAAGAAAAATAAAATTGCCGA 59.287 29.630 0.00 0.00 0.00 5.54
2606 3810 8.503196 GGTTCAAAGAAAAATAAAATTGCCGAT 58.497 29.630 0.00 0.00 0.00 4.18
2607 3811 9.316859 GTTCAAAGAAAAATAAAATTGCCGATG 57.683 29.630 0.00 0.00 0.00 3.84
2608 3812 8.824159 TCAAAGAAAAATAAAATTGCCGATGA 57.176 26.923 0.00 0.00 0.00 2.92
2609 3813 8.924691 TCAAAGAAAAATAAAATTGCCGATGAG 58.075 29.630 0.00 0.00 0.00 2.90
2610 3814 8.924691 CAAAGAAAAATAAAATTGCCGATGAGA 58.075 29.630 0.00 0.00 0.00 3.27
2611 3815 8.693542 AAGAAAAATAAAATTGCCGATGAGAG 57.306 30.769 0.00 0.00 0.00 3.20
2612 3816 7.260603 AGAAAAATAAAATTGCCGATGAGAGG 58.739 34.615 0.00 0.00 0.00 3.69
2613 3817 5.520376 AAATAAAATTGCCGATGAGAGGG 57.480 39.130 0.00 0.00 0.00 4.30
2614 3818 2.514458 AAAATTGCCGATGAGAGGGT 57.486 45.000 0.00 0.00 0.00 4.34
2615 3819 2.514458 AAATTGCCGATGAGAGGGTT 57.486 45.000 0.00 0.00 0.00 4.11
2616 3820 2.044123 AATTGCCGATGAGAGGGTTC 57.956 50.000 0.00 0.00 0.00 3.62
2617 3821 0.179073 ATTGCCGATGAGAGGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
2618 3822 1.254975 TTGCCGATGAGAGGGTTCGA 61.255 55.000 0.00 0.00 34.92 3.71
2619 3823 1.043116 TGCCGATGAGAGGGTTCGAT 61.043 55.000 0.00 0.00 34.92 3.59
2620 3824 0.319125 GCCGATGAGAGGGTTCGATC 60.319 60.000 0.00 0.00 34.92 3.69
2621 3825 1.323412 CCGATGAGAGGGTTCGATCT 58.677 55.000 0.00 0.00 34.92 2.75
2622 3826 1.000827 CCGATGAGAGGGTTCGATCTG 60.001 57.143 0.00 0.00 34.92 2.90
2623 3827 1.950216 CGATGAGAGGGTTCGATCTGA 59.050 52.381 0.00 0.00 34.92 3.27
2624 3828 2.556189 CGATGAGAGGGTTCGATCTGAT 59.444 50.000 0.00 0.00 34.92 2.90
2625 3829 3.753797 CGATGAGAGGGTTCGATCTGATA 59.246 47.826 0.00 0.00 34.92 2.15
2626 3830 4.216472 CGATGAGAGGGTTCGATCTGATAA 59.784 45.833 0.00 0.00 34.92 1.75
2627 3831 4.920640 TGAGAGGGTTCGATCTGATAAC 57.079 45.455 0.00 0.00 0.00 1.89
2628 3832 3.637229 TGAGAGGGTTCGATCTGATAACC 59.363 47.826 12.09 12.09 41.62 2.85
2629 3833 3.892588 GAGAGGGTTCGATCTGATAACCT 59.107 47.826 17.52 8.39 41.95 3.50
2630 3834 3.639094 AGAGGGTTCGATCTGATAACCTG 59.361 47.826 17.52 0.00 41.95 4.00
2631 3835 2.103263 AGGGTTCGATCTGATAACCTGC 59.897 50.000 17.52 6.45 41.95 4.85
2632 3836 2.484889 GGTTCGATCTGATAACCTGCC 58.515 52.381 12.91 0.00 39.66 4.85
2633 3837 2.158957 GGTTCGATCTGATAACCTGCCA 60.159 50.000 12.91 0.00 39.66 4.92
2634 3838 3.531538 GTTCGATCTGATAACCTGCCAA 58.468 45.455 0.00 0.00 0.00 4.52
2635 3839 3.179443 TCGATCTGATAACCTGCCAAC 57.821 47.619 0.00 0.00 0.00 3.77
2636 3840 2.766263 TCGATCTGATAACCTGCCAACT 59.234 45.455 0.00 0.00 0.00 3.16
2637 3841 2.868583 CGATCTGATAACCTGCCAACTG 59.131 50.000 0.00 0.00 0.00 3.16
2638 3842 2.787473 TCTGATAACCTGCCAACTGG 57.213 50.000 0.00 0.00 40.61 4.00
2648 3852 3.566261 CCAACTGGCTACGCACAG 58.434 61.111 0.00 0.00 40.48 3.66
2652 3856 2.616969 ACTGGCTACGCACAGTTTG 58.383 52.632 0.00 0.00 45.03 2.93
2653 3857 0.179056 ACTGGCTACGCACAGTTTGT 60.179 50.000 0.00 0.00 45.03 2.83
2654 3858 0.512952 CTGGCTACGCACAGTTTGTC 59.487 55.000 0.00 0.00 0.00 3.18
2655 3859 0.882927 TGGCTACGCACAGTTTGTCC 60.883 55.000 0.00 0.00 0.00 4.02
2656 3860 0.882927 GGCTACGCACAGTTTGTCCA 60.883 55.000 0.00 0.00 0.00 4.02
2657 3861 0.941542 GCTACGCACAGTTTGTCCAA 59.058 50.000 0.00 0.00 0.00 3.53
2658 3862 1.333791 GCTACGCACAGTTTGTCCAAC 60.334 52.381 0.00 0.00 35.32 3.77
2666 3870 2.348411 AGTTTGTCCAACTGACCCAG 57.652 50.000 0.00 0.00 44.70 4.45
2667 3871 0.668535 GTTTGTCCAACTGACCCAGC 59.331 55.000 0.00 0.00 43.78 4.85
2668 3872 0.550914 TTTGTCCAACTGACCCAGCT 59.449 50.000 0.00 0.00 43.78 4.24
2669 3873 1.429930 TTGTCCAACTGACCCAGCTA 58.570 50.000 0.00 0.00 43.78 3.32
2670 3874 0.976641 TGTCCAACTGACCCAGCTAG 59.023 55.000 0.00 0.00 43.78 3.42
2671 3875 1.267121 GTCCAACTGACCCAGCTAGA 58.733 55.000 0.00 0.00 38.09 2.43
2672 3876 1.205893 GTCCAACTGACCCAGCTAGAG 59.794 57.143 0.00 0.00 38.09 2.43
2673 3877 1.077169 TCCAACTGACCCAGCTAGAGA 59.923 52.381 0.00 0.00 34.37 3.10
2674 3878 2.114616 CCAACTGACCCAGCTAGAGAT 58.885 52.381 0.00 0.00 34.37 2.75
2675 3879 3.052869 TCCAACTGACCCAGCTAGAGATA 60.053 47.826 0.00 0.00 34.37 1.98
2676 3880 3.900601 CCAACTGACCCAGCTAGAGATAT 59.099 47.826 0.00 0.00 34.37 1.63
2677 3881 4.262377 CCAACTGACCCAGCTAGAGATATG 60.262 50.000 0.00 0.00 34.37 1.78
2678 3882 4.461450 ACTGACCCAGCTAGAGATATGA 57.539 45.455 0.00 0.00 34.37 2.15
2679 3883 4.406456 ACTGACCCAGCTAGAGATATGAG 58.594 47.826 0.00 0.00 34.37 2.90
2680 3884 4.141041 ACTGACCCAGCTAGAGATATGAGT 60.141 45.833 0.00 0.00 34.37 3.41
2681 3885 4.148079 TGACCCAGCTAGAGATATGAGTG 58.852 47.826 0.00 0.00 0.00 3.51
2682 3886 3.505386 ACCCAGCTAGAGATATGAGTGG 58.495 50.000 0.00 0.00 0.00 4.00
2683 3887 3.116939 ACCCAGCTAGAGATATGAGTGGT 60.117 47.826 0.00 0.00 0.00 4.16
2684 3888 3.900601 CCCAGCTAGAGATATGAGTGGTT 59.099 47.826 0.00 0.00 0.00 3.67
2685 3889 4.346418 CCCAGCTAGAGATATGAGTGGTTT 59.654 45.833 0.00 0.00 0.00 3.27
2686 3890 5.163258 CCCAGCTAGAGATATGAGTGGTTTT 60.163 44.000 0.00 0.00 0.00 2.43
2687 3891 6.352516 CCAGCTAGAGATATGAGTGGTTTTT 58.647 40.000 0.00 0.00 0.00 1.94
2716 3920 4.279043 GCAACGCACGGGCCTTTT 62.279 61.111 2.82 0.00 36.38 2.27
2717 3921 2.415426 CAACGCACGGGCCTTTTT 59.585 55.556 2.82 0.00 36.38 1.94
2718 3922 1.948635 CAACGCACGGGCCTTTTTG 60.949 57.895 2.82 0.00 36.38 2.44
2719 3923 3.783478 AACGCACGGGCCTTTTTGC 62.783 57.895 2.82 5.50 36.38 3.68
2720 3924 3.977244 CGCACGGGCCTTTTTGCT 61.977 61.111 2.82 0.00 36.38 3.91
2721 3925 2.622011 CGCACGGGCCTTTTTGCTA 61.622 57.895 2.82 0.00 36.38 3.49
2722 3926 1.212751 GCACGGGCCTTTTTGCTAG 59.787 57.895 0.00 0.00 32.00 3.42
2723 3927 1.524008 GCACGGGCCTTTTTGCTAGT 61.524 55.000 0.00 0.00 32.00 2.57
2729 3933 4.397103 ACGGGCCTTTTTGCTAGTAATTAC 59.603 41.667 7.57 7.57 0.00 1.89
2733 3937 7.327975 GGGCCTTTTTGCTAGTAATTACAAAT 58.672 34.615 17.65 0.00 32.50 2.32
2801 4191 8.783833 ATGAGTTGTATATTTATGCAGGCTAG 57.216 34.615 0.00 0.00 30.17 3.42
2812 4202 2.436417 TGCAGGCTAGTTTTTAGGCAG 58.564 47.619 9.90 3.67 41.88 4.85
2830 4220 3.897325 GCAGTTTTGCTAACCCTTGTAC 58.103 45.455 0.00 0.00 46.95 2.90
2832 4222 4.320275 GCAGTTTTGCTAACCCTTGTACTC 60.320 45.833 0.00 0.00 46.95 2.59
2833 4223 4.215613 CAGTTTTGCTAACCCTTGTACTCC 59.784 45.833 0.00 0.00 0.00 3.85
2834 4224 3.428413 TTTGCTAACCCTTGTACTCCC 57.572 47.619 0.00 0.00 0.00 4.30
2835 4225 2.337359 TGCTAACCCTTGTACTCCCT 57.663 50.000 0.00 0.00 0.00 4.20
2836 4226 2.185387 TGCTAACCCTTGTACTCCCTC 58.815 52.381 0.00 0.00 0.00 4.30
2837 4227 1.485480 GCTAACCCTTGTACTCCCTCC 59.515 57.143 0.00 0.00 0.00 4.30
2839 4229 0.178912 AACCCTTGTACTCCCTCCGT 60.179 55.000 0.00 0.00 0.00 4.69
2840 4230 0.614134 ACCCTTGTACTCCCTCCGTC 60.614 60.000 0.00 0.00 0.00 4.79
2842 4232 1.664321 CCTTGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
2846 4236 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2847 4237 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2850 4240 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2851 4241 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2854 4244 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2855 4245 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2856 4246 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2857 4247 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2862 4900 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2866 4904 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2874 4912 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2912 4950 9.845214 ACTAAAATATGTCTAGATACATCCCCT 57.155 33.333 0.00 0.00 40.52 4.79
2919 4957 7.554959 TGTCTAGATACATCCCCTTTTATCC 57.445 40.000 0.00 0.00 0.00 2.59
2920 4958 7.079700 TGTCTAGATACATCCCCTTTTATCCA 58.920 38.462 0.00 0.00 0.00 3.41
2921 4959 7.739444 TGTCTAGATACATCCCCTTTTATCCAT 59.261 37.037 0.00 0.00 0.00 3.41
2922 4960 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
2925 4963 8.712228 AGATACATCCCCTTTTATCCATTTTC 57.288 34.615 0.00 0.00 0.00 2.29
2926 4964 8.288812 AGATACATCCCCTTTTATCCATTTTCA 58.711 33.333 0.00 0.00 0.00 2.69
2927 4965 9.093458 GATACATCCCCTTTTATCCATTTTCAT 57.907 33.333 0.00 0.00 0.00 2.57
2928 4966 7.128234 ACATCCCCTTTTATCCATTTTCATG 57.872 36.000 0.00 0.00 0.00 3.07
2930 4968 6.790232 TCCCCTTTTATCCATTTTCATGAC 57.210 37.500 0.00 0.00 31.07 3.06
2932 4970 6.728164 TCCCCTTTTATCCATTTTCATGACAA 59.272 34.615 0.00 0.00 31.07 3.18
2933 4971 7.043565 CCCCTTTTATCCATTTTCATGACAAG 58.956 38.462 0.00 0.00 31.07 3.16
2935 4973 8.748412 CCCTTTTATCCATTTTCATGACAAGTA 58.252 33.333 0.00 0.00 31.07 2.24
2941 4979 6.851609 TCCATTTTCATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 31.07 4.30
2942 4980 6.035843 CCATTTTCATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 31.07 5.14
2943 4981 6.127758 CCATTTTCATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 31.07 5.14
2944 4982 7.416664 CCATTTTCATGACAAGTATTTCCGGAT 60.417 37.037 4.15 0.00 31.07 4.18
2956 5030 2.012569 TCCGGATGGAGGGAGTACA 58.987 57.895 0.00 0.00 40.17 2.90
2957 5031 0.396695 TCCGGATGGAGGGAGTACAC 60.397 60.000 0.00 0.00 40.17 2.90
2959 5033 1.414158 CGGATGGAGGGAGTACACAT 58.586 55.000 0.00 0.00 0.00 3.21
2963 5037 4.040461 CGGATGGAGGGAGTACACATTAAT 59.960 45.833 0.00 0.00 0.00 1.40
2964 5038 5.454755 CGGATGGAGGGAGTACACATTAATT 60.455 44.000 0.00 0.00 0.00 1.40
2971 5045 9.457436 GGAGGGAGTACACATTAATTTTTCTTA 57.543 33.333 0.00 0.00 0.00 2.10
2990 5064 7.910441 TTCTTAATAAACTTTACTGTCGGGG 57.090 36.000 0.00 0.00 0.00 5.73
2991 5065 6.408869 TCTTAATAAACTTTACTGTCGGGGG 58.591 40.000 0.00 0.00 0.00 5.40
2992 5066 4.914177 AATAAACTTTACTGTCGGGGGA 57.086 40.909 0.00 0.00 0.00 4.81
2994 5068 3.345508 AAACTTTACTGTCGGGGGATC 57.654 47.619 0.00 0.00 0.00 3.36
2995 5069 1.201424 ACTTTACTGTCGGGGGATCC 58.799 55.000 1.92 1.92 0.00 3.36
3009 5083 0.179936 GGATCCCCAGCAGTTCTCAG 59.820 60.000 0.00 0.00 0.00 3.35
3010 5084 0.463474 GATCCCCAGCAGTTCTCAGC 60.463 60.000 0.00 0.00 0.00 4.26
3011 5085 0.913451 ATCCCCAGCAGTTCTCAGCT 60.913 55.000 0.00 0.00 42.94 4.24
3013 5087 0.177604 CCCCAGCAGTTCTCAGCTAG 59.822 60.000 0.00 0.00 39.50 3.42
3014 5088 0.901124 CCCAGCAGTTCTCAGCTAGT 59.099 55.000 0.00 0.00 39.50 2.57
3017 5091 3.055819 CCCAGCAGTTCTCAGCTAGTAAA 60.056 47.826 0.00 0.00 39.50 2.01
3019 5093 4.629200 CCAGCAGTTCTCAGCTAGTAAAAG 59.371 45.833 0.00 0.00 39.50 2.27
3020 5094 4.629200 CAGCAGTTCTCAGCTAGTAAAAGG 59.371 45.833 0.00 0.00 39.50 3.11
3021 5095 3.935828 GCAGTTCTCAGCTAGTAAAAGGG 59.064 47.826 0.00 0.00 0.00 3.95
3026 5100 1.280998 TCAGCTAGTAAAAGGGTGGCC 59.719 52.381 0.00 0.00 0.00 5.36
3028 5102 1.004394 AGCTAGTAAAAGGGTGGCCAC 59.996 52.381 28.57 28.57 0.00 5.01
3029 5103 1.271707 GCTAGTAAAAGGGTGGCCACA 60.272 52.381 35.78 12.98 0.00 4.17
3030 5104 2.620627 GCTAGTAAAAGGGTGGCCACAT 60.621 50.000 35.78 21.79 0.00 3.21
3031 5105 2.694616 AGTAAAAGGGTGGCCACATT 57.305 45.000 35.78 26.04 0.00 2.71
3033 5107 1.201414 GTAAAAGGGTGGCCACATTCG 59.799 52.381 35.78 0.00 0.00 3.34
3036 5121 0.680921 AAGGGTGGCCACATTCGATG 60.681 55.000 35.78 0.00 0.00 3.84
3064 5155 9.096823 TCCTCTTGTCTCTTAAGTGGTAAATTA 57.903 33.333 1.63 0.00 38.97 1.40
3110 5202 9.351570 GGTACATAGTTAATTAACTCTATCGGC 57.648 37.037 29.47 16.24 44.77 5.54
3165 5259 7.665690 AGTGAGATAGATGAATACCACATCAC 58.334 38.462 0.00 0.00 44.29 3.06
3242 5336 2.421529 GCCGTCAAAGTAATGGGAGGAT 60.422 50.000 0.00 0.00 0.00 3.24
3263 5357 1.187087 CTTGCGTAGAAGAGGGGAGT 58.813 55.000 0.00 0.00 0.00 3.85
3265 5359 0.895530 TGCGTAGAAGAGGGGAGTTG 59.104 55.000 0.00 0.00 0.00 3.16
3271 5365 1.874345 GAAGAGGGGAGTTGCGTCGA 61.874 60.000 0.00 0.00 0.00 4.20
3333 5427 1.101331 GAAATGCCCCAAGAGCTCAG 58.899 55.000 17.77 7.89 0.00 3.35
3356 5450 6.751425 CAGCTATGCAGTATACTTGAGCTATC 59.249 42.308 19.56 7.16 0.00 2.08
3371 5465 4.465660 TGAGCTATCAAGATATGCCTCCTC 59.534 45.833 0.00 0.00 30.61 3.71
3410 5504 9.908152 GCTTTCTATATTACTCTCTTCTTCCTC 57.092 37.037 0.00 0.00 0.00 3.71
3488 5582 5.571784 TGTTCATGGAAGCTCAAATGATC 57.428 39.130 6.13 6.39 0.00 2.92
3568 5662 9.884465 GAGCCAGATAAATTGTATGTAAATCAC 57.116 33.333 0.00 0.00 0.00 3.06
3619 5713 6.924111 TCGCTCATTTGCTCAGTATATGATA 58.076 36.000 0.00 0.00 37.28 2.15
3697 5791 7.323049 TCATTCACAAAAGTTTCTTCGGTTA 57.677 32.000 0.00 0.00 0.00 2.85
3700 5794 6.928979 TCACAAAAGTTTCTTCGGTTATCA 57.071 33.333 0.00 0.00 0.00 2.15
3715 5809 4.495184 CGGTTATCAATAGAAACCAACCGC 60.495 45.833 9.69 0.00 46.88 5.68
3721 5815 1.234821 TAGAAACCAACCGCTTGCAG 58.765 50.000 0.00 0.00 0.00 4.41
3724 5818 0.751643 AAACCAACCGCTTGCAGTCT 60.752 50.000 0.00 0.00 0.00 3.24
3730 5824 1.376424 CCGCTTGCAGTCTGGTGAT 60.376 57.895 1.14 0.00 0.00 3.06
3731 5825 0.108186 CCGCTTGCAGTCTGGTGATA 60.108 55.000 1.14 0.00 0.00 2.15
3806 5900 4.515028 ATTCAGATCAAGATGAAGCCCA 57.485 40.909 0.00 0.00 38.72 5.36
3813 5907 4.038271 TCAAGATGAAGCCCAGTGATTT 57.962 40.909 0.00 0.00 0.00 2.17
3889 5983 1.720852 GCATTGGTTGAATCGTTGCAC 59.279 47.619 0.00 0.00 0.00 4.57
3911 6005 3.132160 CAGCTGAAGCACCTGAGATATG 58.868 50.000 8.42 0.00 45.16 1.78
3920 6014 3.244353 GCACCTGAGATATGTGGCACTAT 60.244 47.826 19.83 13.33 0.00 2.12
3953 6047 6.776116 TGATATATCTGTACTTCCGGTGAACT 59.224 38.462 13.79 0.00 0.00 3.01
3957 6051 3.385433 TCTGTACTTCCGGTGAACTTTGA 59.615 43.478 0.00 0.00 0.00 2.69
4111 6205 6.166279 GTTCTGTGGTCTGACAAATATGAGA 58.834 40.000 10.38 0.00 0.00 3.27
4129 6223 3.056107 TGAGAAGACTACATGGGTTTCGG 60.056 47.826 0.00 0.00 0.00 4.30
4204 6298 9.973661 TCCCAACTCAGATTTCTTGAATTAATA 57.026 29.630 0.00 0.00 0.00 0.98
4264 6358 4.568072 TGCTAGGCTTGGTGAGAAAATA 57.432 40.909 0.00 0.00 0.00 1.40
4277 6371 6.695713 TGGTGAGAAAATACATCTTATCGACG 59.304 38.462 0.00 0.00 0.00 5.12
4342 6436 5.221067 GGTCAAAGAAAAAGAAGGTGTCTCC 60.221 44.000 0.00 0.00 34.56 3.71
4359 6453 0.756294 TCCGAGGAAGAGCAACAACA 59.244 50.000 0.00 0.00 0.00 3.33
4386 6480 3.357203 AGAAGGTGTTCGATGAGCTCTA 58.643 45.455 16.19 1.49 37.79 2.43
4437 6531 1.780503 GATGGGTATTTTGGCCAGCT 58.219 50.000 5.11 0.00 0.00 4.24
4477 6577 0.884704 CCACGTCAAAGGTGTCCCTG 60.885 60.000 0.00 0.00 41.56 4.45
4495 6595 6.317893 TGTCCCTGAACAACTTAAAGTTTCTC 59.682 38.462 0.00 0.00 36.03 2.87
4510 6610 9.621629 TTAAAGTTTCTCACATTTTCTGACCTA 57.378 29.630 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 249 0.325765 GCCTCTGGTTACCTCCCTCT 60.326 60.000 2.07 0.00 0.00 3.69
295 301 4.154347 CTCACCGGGAGCTGAGCC 62.154 72.222 6.32 0.00 36.69 4.70
348 354 2.540383 ACAAGTGGTATCAGAGCCTCA 58.460 47.619 0.00 0.00 0.00 3.86
616 683 4.500265 GCACATGGTCCTTGTGGT 57.500 55.556 29.47 1.08 43.69 4.16
688 780 4.626081 ACGTGGTGGTCAGCAGGC 62.626 66.667 18.65 2.63 45.31 4.85
689 781 2.357517 GACGTGGTGGTCAGCAGG 60.358 66.667 17.57 17.57 46.38 4.85
690 782 0.946221 GAAGACGTGGTGGTCAGCAG 60.946 60.000 0.00 1.49 39.74 4.24
691 783 1.069090 GAAGACGTGGTGGTCAGCA 59.931 57.895 0.00 0.00 39.42 4.41
692 784 0.667792 GAGAAGACGTGGTGGTCAGC 60.668 60.000 0.00 0.00 39.42 4.26
693 785 0.962489 AGAGAAGACGTGGTGGTCAG 59.038 55.000 0.00 0.00 39.42 3.51
694 786 0.959553 GAGAGAAGACGTGGTGGTCA 59.040 55.000 0.00 0.00 39.42 4.02
695 787 1.068194 CAGAGAGAAGACGTGGTGGTC 60.068 57.143 0.00 0.00 37.19 4.02
696 788 0.962489 CAGAGAGAAGACGTGGTGGT 59.038 55.000 0.00 0.00 0.00 4.16
697 789 0.962489 ACAGAGAGAAGACGTGGTGG 59.038 55.000 0.00 0.00 0.00 4.61
698 790 1.400371 CGACAGAGAGAAGACGTGGTG 60.400 57.143 0.00 0.00 0.00 4.17
699 791 0.875728 CGACAGAGAGAAGACGTGGT 59.124 55.000 0.00 0.00 0.00 4.16
700 792 0.455295 GCGACAGAGAGAAGACGTGG 60.455 60.000 0.00 0.00 0.00 4.94
701 793 0.791238 CGCGACAGAGAGAAGACGTG 60.791 60.000 0.00 0.00 0.00 4.49
719 811 1.797933 CTTGCCGTGAGACGACTCG 60.798 63.158 10.23 0.00 46.05 4.18
720 812 2.089349 GCTTGCCGTGAGACGACTC 61.089 63.158 8.00 8.00 46.05 3.36
721 813 2.049063 GCTTGCCGTGAGACGACT 60.049 61.111 0.00 0.00 46.05 4.18
722 814 2.049063 AGCTTGCCGTGAGACGAC 60.049 61.111 0.00 0.00 46.05 4.34
724 816 3.175240 CGAGCTTGCCGTGAGACG 61.175 66.667 0.00 0.00 42.11 4.18
756 848 5.385617 CGATTTGTGAATCTCAGTTGAACC 58.614 41.667 0.00 0.00 39.61 3.62
761 853 2.749621 GCCCGATTTGTGAATCTCAGTT 59.250 45.455 0.00 0.00 39.61 3.16
769 861 1.988293 TTCCTTGCCCGATTTGTGAA 58.012 45.000 0.00 0.00 0.00 3.18
862 975 5.704053 AGGGACAAATAAAACTTGGACTACG 59.296 40.000 0.00 0.00 0.00 3.51
910 1024 5.067805 ACAAGGAAAACAAGCAAGAAGGTAG 59.932 40.000 0.00 0.00 0.00 3.18
911 1025 4.953579 ACAAGGAAAACAAGCAAGAAGGTA 59.046 37.500 0.00 0.00 0.00 3.08
912 1026 3.769300 ACAAGGAAAACAAGCAAGAAGGT 59.231 39.130 0.00 0.00 0.00 3.50
913 1027 4.391405 ACAAGGAAAACAAGCAAGAAGG 57.609 40.909 0.00 0.00 0.00 3.46
995 1126 3.274586 CATCCAGCACCATCGCCG 61.275 66.667 0.00 0.00 0.00 6.46
1022 1153 1.419762 TGAGCAAGTTGCCCAAGTAGA 59.580 47.619 24.02 0.00 46.52 2.59
1107 1238 1.118965 TGAGGTCCCGAAGCTTGTCA 61.119 55.000 2.10 0.00 35.33 3.58
1266 1397 1.137872 CACCCTGCATCTACAGAGGAC 59.862 57.143 0.00 0.00 40.25 3.85
1481 1621 2.680352 GGTCGAGCTCCCCTGACA 60.680 66.667 17.67 0.00 33.04 3.58
1551 1697 3.754850 CCTCACTTGTTTGCATGATCTGA 59.245 43.478 0.00 0.00 0.00 3.27
1584 1741 2.835580 TGGCAACCACCATGATTTTG 57.164 45.000 0.00 0.00 33.75 2.44
1592 1749 0.480690 ACCTACAATGGCAACCACCA 59.519 50.000 0.00 0.00 45.82 4.17
1593 1750 0.887933 CACCTACAATGGCAACCACC 59.112 55.000 0.00 0.00 35.80 4.61
1594 1751 1.616159 ACACCTACAATGGCAACCAC 58.384 50.000 0.00 0.00 35.80 4.16
1682 1839 7.441890 TTGACGCTCAACCATATCTTTTTAA 57.558 32.000 0.00 0.00 30.26 1.52
2221 2696 3.055819 TGACAGTCTCTTATGGTCTTGCC 60.056 47.826 1.31 0.00 37.90 4.52
2337 3344 2.205307 AAGAAGTCGCGCTATGGTAC 57.795 50.000 5.56 0.00 0.00 3.34
2373 3550 4.315803 ACCTCAGTGTGTTATGTAGCAAC 58.684 43.478 0.00 0.00 0.00 4.17
2394 3598 4.188462 ACTTGGGCTTAGCAAAACAAAAC 58.812 39.130 6.53 0.00 0.00 2.43
2399 3603 5.644977 AGATTACTTGGGCTTAGCAAAAC 57.355 39.130 6.53 0.00 0.00 2.43
2422 3626 9.771140 CTTCCCTTTGATAGTAGGTATAGGTAT 57.229 37.037 0.00 0.00 0.00 2.73
2424 3628 7.509659 CACTTCCCTTTGATAGTAGGTATAGGT 59.490 40.741 0.00 0.00 0.00 3.08
2425 3629 7.728981 TCACTTCCCTTTGATAGTAGGTATAGG 59.271 40.741 0.00 0.00 0.00 2.57
2426 3630 8.707796 TCACTTCCCTTTGATAGTAGGTATAG 57.292 38.462 0.00 0.00 0.00 1.31
2428 3632 9.845214 ATATCACTTCCCTTTGATAGTAGGTAT 57.155 33.333 0.00 0.00 37.96 2.73
2429 3633 9.670442 AATATCACTTCCCTTTGATAGTAGGTA 57.330 33.333 0.00 0.00 37.96 3.08
2430 3634 8.568617 AATATCACTTCCCTTTGATAGTAGGT 57.431 34.615 0.00 0.00 37.96 3.08
2431 3635 8.875168 AGAATATCACTTCCCTTTGATAGTAGG 58.125 37.037 0.00 0.00 37.96 3.18
2434 3638 7.995488 CCAAGAATATCACTTCCCTTTGATAGT 59.005 37.037 0.00 0.00 37.96 2.12
2435 3639 7.995488 ACCAAGAATATCACTTCCCTTTGATAG 59.005 37.037 0.00 0.00 37.96 2.08
2436 3640 7.872138 ACCAAGAATATCACTTCCCTTTGATA 58.128 34.615 0.00 0.00 38.70 2.15
2437 3641 6.735556 ACCAAGAATATCACTTCCCTTTGAT 58.264 36.000 0.00 0.00 36.43 2.57
2438 3642 6.139679 ACCAAGAATATCACTTCCCTTTGA 57.860 37.500 0.00 0.00 0.00 2.69
2439 3643 6.840780 AACCAAGAATATCACTTCCCTTTG 57.159 37.500 0.00 0.00 0.00 2.77
2440 3644 6.151144 CGAAACCAAGAATATCACTTCCCTTT 59.849 38.462 0.00 0.00 0.00 3.11
2441 3645 5.648092 CGAAACCAAGAATATCACTTCCCTT 59.352 40.000 0.00 0.00 0.00 3.95
2442 3646 5.186198 CGAAACCAAGAATATCACTTCCCT 58.814 41.667 0.00 0.00 0.00 4.20
2443 3647 4.941873 ACGAAACCAAGAATATCACTTCCC 59.058 41.667 0.00 0.00 0.00 3.97
2444 3648 5.064834 GGACGAAACCAAGAATATCACTTCC 59.935 44.000 0.00 0.00 0.00 3.46
2445 3649 5.064834 GGGACGAAACCAAGAATATCACTTC 59.935 44.000 0.00 0.00 0.00 3.01
2446 3650 4.941873 GGGACGAAACCAAGAATATCACTT 59.058 41.667 0.00 0.00 0.00 3.16
2447 3651 4.514401 GGGACGAAACCAAGAATATCACT 58.486 43.478 0.00 0.00 0.00 3.41
2448 3652 4.877323 GGGACGAAACCAAGAATATCAC 57.123 45.455 0.00 0.00 0.00 3.06
2465 3669 1.509644 GGGACCAAACGAAACGGGAC 61.510 60.000 0.00 0.00 0.00 4.46
2466 3670 1.227913 GGGACCAAACGAAACGGGA 60.228 57.895 0.00 0.00 0.00 5.14
2467 3671 2.609759 CGGGACCAAACGAAACGGG 61.610 63.158 0.00 0.00 0.00 5.28
2468 3672 2.940561 CGGGACCAAACGAAACGG 59.059 61.111 0.00 0.00 0.00 4.44
2469 3673 1.778027 AAGCGGGACCAAACGAAACG 61.778 55.000 0.00 0.00 0.00 3.60
2470 3674 0.040692 GAAGCGGGACCAAACGAAAC 60.041 55.000 0.00 0.00 0.00 2.78
2471 3675 0.464013 TGAAGCGGGACCAAACGAAA 60.464 50.000 0.00 0.00 0.00 3.46
2472 3676 0.464013 TTGAAGCGGGACCAAACGAA 60.464 50.000 0.00 0.00 0.00 3.85
2473 3677 0.250553 ATTGAAGCGGGACCAAACGA 60.251 50.000 0.00 0.00 0.00 3.85
2474 3678 0.596082 AATTGAAGCGGGACCAAACG 59.404 50.000 0.00 0.00 0.00 3.60
2475 3679 3.926821 TTAATTGAAGCGGGACCAAAC 57.073 42.857 0.00 0.00 0.00 2.93
2476 3680 5.011125 TGAAATTAATTGAAGCGGGACCAAA 59.989 36.000 0.39 0.00 0.00 3.28
2477 3681 4.524714 TGAAATTAATTGAAGCGGGACCAA 59.475 37.500 0.39 0.00 0.00 3.67
2478 3682 4.082463 GTGAAATTAATTGAAGCGGGACCA 60.082 41.667 0.39 0.00 0.00 4.02
2479 3683 4.082463 TGTGAAATTAATTGAAGCGGGACC 60.082 41.667 0.39 0.00 0.00 4.46
2480 3684 5.054390 TGTGAAATTAATTGAAGCGGGAC 57.946 39.130 0.39 0.00 0.00 4.46
2481 3685 5.913137 ATGTGAAATTAATTGAAGCGGGA 57.087 34.783 0.39 0.00 0.00 5.14
2482 3686 5.681105 CGTATGTGAAATTAATTGAAGCGGG 59.319 40.000 0.39 0.00 0.00 6.13
2483 3687 5.171337 GCGTATGTGAAATTAATTGAAGCGG 59.829 40.000 0.39 0.00 0.00 5.52
2484 3688 5.965334 AGCGTATGTGAAATTAATTGAAGCG 59.035 36.000 0.39 2.65 0.00 4.68
2485 3689 9.450807 AATAGCGTATGTGAAATTAATTGAAGC 57.549 29.630 0.39 0.49 0.00 3.86
2493 3697 9.268255 CGAAACAAAATAGCGTATGTGAAATTA 57.732 29.630 0.00 0.00 0.00 1.40
2494 3698 7.806014 ACGAAACAAAATAGCGTATGTGAAATT 59.194 29.630 0.00 0.00 32.94 1.82
2495 3699 7.302524 ACGAAACAAAATAGCGTATGTGAAAT 58.697 30.769 0.00 0.00 32.94 2.17
2496 3700 6.660722 ACGAAACAAAATAGCGTATGTGAAA 58.339 32.000 0.00 0.00 32.94 2.69
2501 3705 7.252865 GCAAGTAACGAAACAAAATAGCGTATG 60.253 37.037 0.00 0.00 34.46 2.39
2503 3707 6.072733 GCAAGTAACGAAACAAAATAGCGTA 58.927 36.000 0.00 0.00 34.46 4.42
2506 3710 5.116528 GTGGCAAGTAACGAAACAAAATAGC 59.883 40.000 0.00 0.00 0.00 2.97
2508 3712 5.507650 GGGTGGCAAGTAACGAAACAAAATA 60.508 40.000 0.00 0.00 0.00 1.40
2511 3715 2.099427 GGGTGGCAAGTAACGAAACAAA 59.901 45.455 0.00 0.00 0.00 2.83
2518 3722 0.664224 AAAACGGGTGGCAAGTAACG 59.336 50.000 0.00 0.00 0.00 3.18
2519 3723 2.351060 GCTAAAACGGGTGGCAAGTAAC 60.351 50.000 0.00 0.00 0.00 2.50
2521 3725 1.525941 GCTAAAACGGGTGGCAAGTA 58.474 50.000 0.00 0.00 0.00 2.24
2522 3726 1.176619 GGCTAAAACGGGTGGCAAGT 61.177 55.000 0.00 0.00 0.00 3.16
2523 3727 1.584495 GGCTAAAACGGGTGGCAAG 59.416 57.895 0.00 0.00 0.00 4.01
2524 3728 1.904378 GGGCTAAAACGGGTGGCAA 60.904 57.895 0.00 0.00 0.00 4.52
2525 3729 2.282603 GGGCTAAAACGGGTGGCA 60.283 61.111 0.00 0.00 0.00 4.92
2526 3730 1.904378 TTGGGCTAAAACGGGTGGC 60.904 57.895 0.00 0.00 0.00 5.01
2527 3731 1.858372 CGTTGGGCTAAAACGGGTGG 61.858 60.000 11.12 0.00 45.05 4.61
2528 3732 1.577421 CGTTGGGCTAAAACGGGTG 59.423 57.895 11.12 0.00 45.05 4.61
2533 3737 1.810755 CTTCCTCCGTTGGGCTAAAAC 59.189 52.381 0.00 0.00 0.00 2.43
2535 3739 1.002773 GACTTCCTCCGTTGGGCTAAA 59.997 52.381 0.00 0.00 0.00 1.85
2536 3740 0.611714 GACTTCCTCCGTTGGGCTAA 59.388 55.000 0.00 0.00 0.00 3.09
2538 3742 2.593956 GGACTTCCTCCGTTGGGCT 61.594 63.158 0.00 0.00 0.00 5.19
2540 3744 0.107654 GATGGACTTCCTCCGTTGGG 60.108 60.000 0.00 0.00 43.03 4.12
2541 3745 0.905357 AGATGGACTTCCTCCGTTGG 59.095 55.000 0.00 0.00 43.03 3.77
2542 3746 1.406069 CCAGATGGACTTCCTCCGTTG 60.406 57.143 0.00 0.00 43.03 4.10
2543 3747 0.905357 CCAGATGGACTTCCTCCGTT 59.095 55.000 0.00 0.00 43.03 4.44
2544 3748 1.617947 GCCAGATGGACTTCCTCCGT 61.618 60.000 2.18 0.00 43.03 4.69
2545 3749 1.144936 GCCAGATGGACTTCCTCCG 59.855 63.158 2.18 0.00 43.03 4.63
2546 3750 1.144936 CGCCAGATGGACTTCCTCC 59.855 63.158 2.18 0.00 39.97 4.30
2547 3751 1.144936 CCGCCAGATGGACTTCCTC 59.855 63.158 2.18 0.00 37.39 3.71
2548 3752 3.036429 GCCGCCAGATGGACTTCCT 62.036 63.158 2.18 0.00 37.39 3.36
2549 3753 2.514824 GCCGCCAGATGGACTTCC 60.515 66.667 2.18 0.00 37.39 3.46
2550 3754 2.892425 CGCCGCCAGATGGACTTC 60.892 66.667 2.18 0.00 37.39 3.01
2566 3770 4.954970 AACCTGGGCCACAGTGCG 62.955 66.667 16.96 7.24 46.06 5.34
2567 3771 2.985847 GAACCTGGGCCACAGTGC 60.986 66.667 16.96 0.00 46.06 4.40
2568 3772 0.754957 TTTGAACCTGGGCCACAGTG 60.755 55.000 16.96 11.95 46.06 3.66
2569 3773 0.468029 CTTTGAACCTGGGCCACAGT 60.468 55.000 16.96 0.00 46.06 3.55
2571 3775 0.260230 TTCTTTGAACCTGGGCCACA 59.740 50.000 0.00 0.00 0.00 4.17
2572 3776 1.408969 TTTCTTTGAACCTGGGCCAC 58.591 50.000 0.00 0.00 0.00 5.01
2573 3777 2.166907 TTTTCTTTGAACCTGGGCCA 57.833 45.000 5.85 5.85 0.00 5.36
2574 3778 3.769739 ATTTTTCTTTGAACCTGGGCC 57.230 42.857 0.00 0.00 0.00 5.80
2575 3779 7.744087 ATTTTATTTTTCTTTGAACCTGGGC 57.256 32.000 0.00 0.00 0.00 5.36
2576 3780 8.075574 GCAATTTTATTTTTCTTTGAACCTGGG 58.924 33.333 0.00 0.00 0.00 4.45
2577 3781 8.075574 GGCAATTTTATTTTTCTTTGAACCTGG 58.924 33.333 0.00 0.00 0.00 4.45
2578 3782 7.798052 CGGCAATTTTATTTTTCTTTGAACCTG 59.202 33.333 0.00 0.00 0.00 4.00
2579 3783 7.713073 TCGGCAATTTTATTTTTCTTTGAACCT 59.287 29.630 0.00 0.00 0.00 3.50
2580 3784 7.856556 TCGGCAATTTTATTTTTCTTTGAACC 58.143 30.769 0.00 0.00 0.00 3.62
2581 3785 9.316859 CATCGGCAATTTTATTTTTCTTTGAAC 57.683 29.630 0.00 0.00 0.00 3.18
2582 3786 9.265901 TCATCGGCAATTTTATTTTTCTTTGAA 57.734 25.926 0.00 0.00 0.00 2.69
2583 3787 8.824159 TCATCGGCAATTTTATTTTTCTTTGA 57.176 26.923 0.00 0.00 0.00 2.69
2584 3788 8.924691 TCTCATCGGCAATTTTATTTTTCTTTG 58.075 29.630 0.00 0.00 0.00 2.77
2585 3789 9.143631 CTCTCATCGGCAATTTTATTTTTCTTT 57.856 29.630 0.00 0.00 0.00 2.52
2586 3790 7.761249 CCTCTCATCGGCAATTTTATTTTTCTT 59.239 33.333 0.00 0.00 0.00 2.52
2599 3803 1.218047 CGAACCCTCTCATCGGCAA 59.782 57.895 0.00 0.00 33.15 4.52
2600 3804 1.043116 ATCGAACCCTCTCATCGGCA 61.043 55.000 0.00 0.00 37.20 5.69
2601 3805 0.319125 GATCGAACCCTCTCATCGGC 60.319 60.000 0.00 0.00 37.20 5.54
2602 3806 1.000827 CAGATCGAACCCTCTCATCGG 60.001 57.143 0.00 0.00 37.20 4.18
2603 3807 1.950216 TCAGATCGAACCCTCTCATCG 59.050 52.381 0.00 0.00 37.90 3.84
2604 3808 5.465935 GTTATCAGATCGAACCCTCTCATC 58.534 45.833 0.00 0.00 0.00 2.92
2605 3809 4.282195 GGTTATCAGATCGAACCCTCTCAT 59.718 45.833 4.25 0.00 37.28 2.90
2606 3810 3.637229 GGTTATCAGATCGAACCCTCTCA 59.363 47.826 4.25 0.00 37.28 3.27
2607 3811 3.892588 AGGTTATCAGATCGAACCCTCTC 59.107 47.826 10.45 0.00 43.11 3.20
2608 3812 3.639094 CAGGTTATCAGATCGAACCCTCT 59.361 47.826 10.45 0.00 43.11 3.69
2609 3813 3.800604 GCAGGTTATCAGATCGAACCCTC 60.801 52.174 10.45 1.60 43.11 4.30
2610 3814 2.103263 GCAGGTTATCAGATCGAACCCT 59.897 50.000 10.45 7.35 43.11 4.34
2611 3815 2.484889 GCAGGTTATCAGATCGAACCC 58.515 52.381 10.45 5.76 43.11 4.11
2612 3816 2.158957 TGGCAGGTTATCAGATCGAACC 60.159 50.000 6.92 6.92 42.54 3.62
2613 3817 3.179443 TGGCAGGTTATCAGATCGAAC 57.821 47.619 0.00 0.00 0.00 3.95
2614 3818 3.197766 AGTTGGCAGGTTATCAGATCGAA 59.802 43.478 0.00 0.00 0.00 3.71
2615 3819 2.766263 AGTTGGCAGGTTATCAGATCGA 59.234 45.455 0.00 0.00 0.00 3.59
2616 3820 2.868583 CAGTTGGCAGGTTATCAGATCG 59.131 50.000 0.00 0.00 0.00 3.69
2617 3821 3.209410 CCAGTTGGCAGGTTATCAGATC 58.791 50.000 0.00 0.00 0.00 2.75
2618 3822 3.287867 CCAGTTGGCAGGTTATCAGAT 57.712 47.619 0.00 0.00 0.00 2.90
2619 3823 2.787473 CCAGTTGGCAGGTTATCAGA 57.213 50.000 0.00 0.00 0.00 3.27
2637 3841 4.502495 GTTGGACAAACTGTGCGTAGCC 62.502 54.545 0.00 0.00 44.71 3.93
2638 3842 1.333791 GTTGGACAAACTGTGCGTAGC 60.334 52.381 0.00 0.00 41.94 3.58
2639 3843 2.663279 GTTGGACAAACTGTGCGTAG 57.337 50.000 0.00 0.00 41.94 3.51
2652 3856 1.205893 CTCTAGCTGGGTCAGTTGGAC 59.794 57.143 0.00 0.00 46.20 4.02
2653 3857 1.077169 TCTCTAGCTGGGTCAGTTGGA 59.923 52.381 0.00 0.00 32.34 3.53
2654 3858 1.561643 TCTCTAGCTGGGTCAGTTGG 58.438 55.000 0.00 0.00 33.43 3.77
2655 3859 4.586421 TCATATCTCTAGCTGGGTCAGTTG 59.414 45.833 0.00 0.00 33.43 3.16
2656 3860 4.809193 TCATATCTCTAGCTGGGTCAGTT 58.191 43.478 0.00 0.00 33.43 3.16
2657 3861 4.141041 ACTCATATCTCTAGCTGGGTCAGT 60.141 45.833 0.00 0.00 33.43 3.41
2658 3862 4.218200 CACTCATATCTCTAGCTGGGTCAG 59.782 50.000 0.00 0.00 34.12 3.51
2659 3863 4.148079 CACTCATATCTCTAGCTGGGTCA 58.852 47.826 0.00 0.00 0.00 4.02
2660 3864 3.509575 CCACTCATATCTCTAGCTGGGTC 59.490 52.174 0.00 0.00 0.00 4.46
2661 3865 3.116939 ACCACTCATATCTCTAGCTGGGT 60.117 47.826 0.00 0.00 0.00 4.51
2662 3866 3.505386 ACCACTCATATCTCTAGCTGGG 58.495 50.000 0.00 0.00 0.00 4.45
2663 3867 5.543507 AAACCACTCATATCTCTAGCTGG 57.456 43.478 0.00 0.00 0.00 4.85
2699 3903 3.783478 AAAAAGGCCCGTGCGTTGC 62.783 57.895 0.00 0.00 44.30 4.17
2700 3904 1.948635 CAAAAAGGCCCGTGCGTTG 60.949 57.895 0.00 0.00 44.30 4.10
2701 3905 2.415426 CAAAAAGGCCCGTGCGTT 59.585 55.556 0.00 0.00 46.85 4.84
2702 3906 4.279043 GCAAAAAGGCCCGTGCGT 62.279 61.111 0.00 0.00 38.85 5.24
2703 3907 2.527547 CTAGCAAAAAGGCCCGTGCG 62.528 60.000 0.00 0.00 41.90 5.34
2704 3908 1.212751 CTAGCAAAAAGGCCCGTGC 59.787 57.895 0.00 4.01 37.26 5.34
2705 3909 1.816074 TACTAGCAAAAAGGCCCGTG 58.184 50.000 0.00 0.00 0.00 4.94
2706 3910 2.572209 TTACTAGCAAAAAGGCCCGT 57.428 45.000 0.00 0.00 0.00 5.28
2707 3911 4.396790 TGTAATTACTAGCAAAAAGGCCCG 59.603 41.667 16.33 0.00 0.00 6.13
2708 3912 5.907866 TGTAATTACTAGCAAAAAGGCCC 57.092 39.130 16.33 0.00 0.00 5.80
2797 4174 4.871513 AGCAAAACTGCCTAAAAACTAGC 58.128 39.130 0.00 0.00 34.90 3.42
2801 4191 4.748102 GGGTTAGCAAAACTGCCTAAAAAC 59.252 41.667 2.48 0.00 34.90 2.43
2806 4196 3.153919 CAAGGGTTAGCAAAACTGCCTA 58.846 45.455 2.48 0.00 34.90 3.93
2809 4199 3.568430 AGTACAAGGGTTAGCAAAACTGC 59.432 43.478 0.00 0.00 0.00 4.40
2812 4202 3.504906 GGGAGTACAAGGGTTAGCAAAAC 59.495 47.826 0.00 0.00 0.00 2.43
2822 4212 1.328430 GGACGGAGGGAGTACAAGGG 61.328 65.000 0.00 0.00 0.00 3.95
2825 4215 0.251297 TTCGGACGGAGGGAGTACAA 60.251 55.000 0.00 0.00 0.00 2.41
2826 4216 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
2828 4218 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2830 4220 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2832 4222 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2833 4223 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2834 4224 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2835 4225 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2836 4226 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2837 4227 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2839 4229 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2840 4230 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2886 4924 9.845214 AGGGGATGTATCTAGACATATTTTAGT 57.155 33.333 0.00 0.00 40.18 2.24
2898 4936 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
2902 4940 8.873144 CATGAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
2905 4943 7.147689 TGTCATGAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 0.00 3.51
2906 4944 6.902416 TGTCATGAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 0.00 3.85
2907 4945 6.259893 TGTCATGAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 0.00 4.81
2908 4946 6.543430 TGTCATGAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 0.00 4.79
2909 4947 7.614494 ACTTGTCATGAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 0.00 3.95
2915 4953 8.620416 CGGAAATACTTGTCATGAAAATGGATA 58.380 33.333 0.00 0.00 0.00 2.59
2916 4954 7.416664 CCGGAAATACTTGTCATGAAAATGGAT 60.417 37.037 0.00 0.00 0.00 3.41
2917 4955 6.127758 CCGGAAATACTTGTCATGAAAATGGA 60.128 38.462 0.00 0.00 0.00 3.41
2918 4956 6.035843 CCGGAAATACTTGTCATGAAAATGG 58.964 40.000 0.00 0.00 0.00 3.16
2919 4957 6.851609 TCCGGAAATACTTGTCATGAAAATG 58.148 36.000 0.00 0.00 0.00 2.32
2920 4958 7.416664 CCATCCGGAAATACTTGTCATGAAAAT 60.417 37.037 9.01 0.00 0.00 1.82
2921 4959 6.127758 CCATCCGGAAATACTTGTCATGAAAA 60.128 38.462 9.01 0.00 0.00 2.29
2922 4960 5.356751 CCATCCGGAAATACTTGTCATGAAA 59.643 40.000 9.01 0.00 0.00 2.69
2925 4963 4.450976 TCCATCCGGAAATACTTGTCATG 58.549 43.478 9.01 0.00 38.83 3.07
2926 4964 4.444876 CCTCCATCCGGAAATACTTGTCAT 60.445 45.833 9.01 0.00 42.21 3.06
2927 4965 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
2928 4966 3.467803 CCTCCATCCGGAAATACTTGTC 58.532 50.000 9.01 0.00 42.21 3.18
2930 4968 2.438021 TCCCTCCATCCGGAAATACTTG 59.562 50.000 9.01 0.00 42.21 3.16
2932 4970 2.330216 CTCCCTCCATCCGGAAATACT 58.670 52.381 9.01 0.00 42.21 2.12
2933 4971 2.047830 ACTCCCTCCATCCGGAAATAC 58.952 52.381 9.01 0.00 42.21 1.89
2935 4973 2.047830 GTACTCCCTCCATCCGGAAAT 58.952 52.381 9.01 0.00 42.21 2.17
2937 4975 0.337082 TGTACTCCCTCCATCCGGAA 59.663 55.000 9.01 0.00 42.21 4.30
2939 4977 0.686441 TGTGTACTCCCTCCATCCGG 60.686 60.000 0.00 0.00 0.00 5.14
2940 4978 1.414158 ATGTGTACTCCCTCCATCCG 58.586 55.000 0.00 0.00 0.00 4.18
2941 4979 5.568620 ATTAATGTGTACTCCCTCCATCC 57.431 43.478 0.00 0.00 0.00 3.51
2942 4980 7.881775 AAAATTAATGTGTACTCCCTCCATC 57.118 36.000 0.00 0.00 0.00 3.51
2943 4981 8.116026 AGAAAAATTAATGTGTACTCCCTCCAT 58.884 33.333 0.00 0.00 0.00 3.41
2944 4982 7.466804 AGAAAAATTAATGTGTACTCCCTCCA 58.533 34.615 0.00 0.00 0.00 3.86
2964 5038 8.785946 CCCCGACAGTAAAGTTTATTAAGAAAA 58.214 33.333 0.00 0.00 0.00 2.29
2971 5045 4.914177 TCCCCCGACAGTAAAGTTTATT 57.086 40.909 0.00 0.00 0.00 1.40
2972 5046 4.141551 GGATCCCCCGACAGTAAAGTTTAT 60.142 45.833 0.00 0.00 0.00 1.40
2974 5048 2.026542 GGATCCCCCGACAGTAAAGTTT 60.027 50.000 0.00 0.00 0.00 2.66
2976 5050 1.201424 GGATCCCCCGACAGTAAAGT 58.799 55.000 0.00 0.00 0.00 2.66
2977 5051 0.468648 GGGATCCCCCGACAGTAAAG 59.531 60.000 21.42 0.00 44.02 1.85
2979 5053 4.386591 GGGATCCCCCGACAGTAA 57.613 61.111 21.42 0.00 44.02 2.24
2989 5063 1.274703 TGAGAACTGCTGGGGATCCC 61.275 60.000 23.95 23.95 45.71 3.85
2990 5064 0.179936 CTGAGAACTGCTGGGGATCC 59.820 60.000 1.92 1.92 0.00 3.36
2991 5065 0.463474 GCTGAGAACTGCTGGGGATC 60.463 60.000 0.00 0.00 37.84 3.36
2992 5066 0.913451 AGCTGAGAACTGCTGGGGAT 60.913 55.000 0.00 0.00 46.55 3.85
2994 5068 3.076092 AGCTGAGAACTGCTGGGG 58.924 61.111 0.00 0.00 46.55 4.96
2999 5073 3.935828 CCCTTTTACTAGCTGAGAACTGC 59.064 47.826 0.00 0.00 40.45 4.40
3000 5074 4.932200 CACCCTTTTACTAGCTGAGAACTG 59.068 45.833 0.00 0.00 0.00 3.16
3001 5075 4.020128 CCACCCTTTTACTAGCTGAGAACT 60.020 45.833 0.00 0.00 0.00 3.01
3002 5076 4.254492 CCACCCTTTTACTAGCTGAGAAC 58.746 47.826 0.00 0.00 0.00 3.01
3005 5079 2.633488 GCCACCCTTTTACTAGCTGAG 58.367 52.381 0.00 0.00 0.00 3.35
3009 5083 1.271707 TGTGGCCACCCTTTTACTAGC 60.272 52.381 32.62 3.62 0.00 3.42
3010 5084 2.871096 TGTGGCCACCCTTTTACTAG 57.129 50.000 32.62 0.00 0.00 2.57
3011 5085 3.692690 GAATGTGGCCACCCTTTTACTA 58.307 45.455 32.62 11.45 0.00 1.82
3013 5087 1.201414 CGAATGTGGCCACCCTTTTAC 59.799 52.381 32.62 15.08 0.00 2.01
3014 5088 1.074084 TCGAATGTGGCCACCCTTTTA 59.926 47.619 32.62 13.86 0.00 1.52
3017 5091 0.680921 CATCGAATGTGGCCACCCTT 60.681 55.000 32.62 24.67 0.00 3.95
3019 5093 2.120909 CCATCGAATGTGGCCACCC 61.121 63.158 32.62 19.79 0.00 4.61
3020 5094 1.376609 GACCATCGAATGTGGCCACC 61.377 60.000 32.62 16.62 40.49 4.61
3021 5095 1.376609 GGACCATCGAATGTGGCCAC 61.377 60.000 29.67 29.67 40.49 5.01
3026 5100 2.932614 GACAAGAGGACCATCGAATGTG 59.067 50.000 0.00 0.00 0.00 3.21
3028 5102 3.131933 AGAGACAAGAGGACCATCGAATG 59.868 47.826 0.00 0.00 0.00 2.67
3029 5103 3.370104 AGAGACAAGAGGACCATCGAAT 58.630 45.455 0.00 0.00 0.00 3.34
3030 5104 2.808919 AGAGACAAGAGGACCATCGAA 58.191 47.619 0.00 0.00 0.00 3.71
3031 5105 2.516227 AGAGACAAGAGGACCATCGA 57.484 50.000 0.00 0.00 0.00 3.59
3033 5107 5.415221 CACTTAAGAGACAAGAGGACCATC 58.585 45.833 10.09 0.00 0.00 3.51
3036 5121 3.579151 ACCACTTAAGAGACAAGAGGACC 59.421 47.826 10.09 0.00 37.25 4.46
3064 5155 3.245407 ACCAAGCTCCTTTAAGGCATTCT 60.245 43.478 6.05 0.00 34.61 2.40
3067 5158 2.907458 ACCAAGCTCCTTTAAGGCAT 57.093 45.000 6.05 0.00 34.61 4.40
3155 5249 5.423931 TGTCCTTTAGCATAGTGATGTGGTA 59.576 40.000 0.00 0.00 35.30 3.25
3165 5259 4.038042 TCAGTCCGATGTCCTTTAGCATAG 59.962 45.833 0.00 0.00 0.00 2.23
3242 5336 1.825474 CTCCCCTCTTCTACGCAAGAA 59.175 52.381 1.34 1.34 42.07 2.52
3263 5357 2.962569 CTCCCAGTCTCGACGCAA 59.037 61.111 0.00 0.00 36.20 4.85
3265 5359 3.691744 CTGCTCCCAGTCTCGACGC 62.692 68.421 0.00 0.00 34.31 5.19
3271 5365 0.111253 CCAAAACCTGCTCCCAGTCT 59.889 55.000 0.00 0.00 37.38 3.24
3333 5427 6.625362 TGATAGCTCAAGTATACTGCATAGC 58.375 40.000 6.06 12.43 0.00 2.97
3356 5450 4.886496 TCAGATGAGGAGGCATATCTTG 57.114 45.455 0.00 0.00 0.00 3.02
3423 5517 3.181497 GGCAACGACTTCATGTGCATAAT 60.181 43.478 4.82 0.00 0.00 1.28
3425 5519 1.737236 GGCAACGACTTCATGTGCATA 59.263 47.619 4.82 0.00 0.00 3.14
3429 5523 1.603802 ACAAGGCAACGACTTCATGTG 59.396 47.619 0.00 0.00 46.39 3.21
3514 5608 4.464597 AGGTTCCGATATATCAGCTCCTTC 59.535 45.833 13.11 0.00 0.00 3.46
3528 5622 3.845860 TCTGGCTCTATAAGGTTCCGAT 58.154 45.455 0.00 0.00 0.00 4.18
3562 5656 3.367703 GCATGCTGCAACTAAGGTGATTT 60.368 43.478 11.37 0.00 44.26 2.17
3593 5687 6.226052 TCATATACTGAGCAAATGAGCGAAT 58.774 36.000 0.00 0.00 40.15 3.34
3619 5713 7.609146 TCATGAACTATGAGTGCTTCATCTTTT 59.391 33.333 7.43 1.54 43.03 2.27
3697 5791 3.119495 GCAAGCGGTTGGTTTCTATTGAT 60.119 43.478 27.01 0.00 33.87 2.57
3700 5794 2.228822 CTGCAAGCGGTTGGTTTCTATT 59.771 45.455 27.01 0.00 33.87 1.73
3715 5809 4.511527 AGTCAATATCACCAGACTGCAAG 58.488 43.478 0.00 0.00 39.67 4.01
3721 5815 6.352516 AGATTTCCAGTCAATATCACCAGAC 58.647 40.000 0.00 0.00 0.00 3.51
3724 5818 8.106462 TGTAAAGATTTCCAGTCAATATCACCA 58.894 33.333 0.00 0.00 0.00 4.17
3730 5824 6.823689 GCTCCTGTAAAGATTTCCAGTCAATA 59.176 38.462 0.00 0.00 0.00 1.90
3731 5825 5.649831 GCTCCTGTAAAGATTTCCAGTCAAT 59.350 40.000 0.00 0.00 0.00 2.57
3806 5900 9.143155 ACCAGAAAAAGTAACCAATAAATCACT 57.857 29.630 0.00 0.00 0.00 3.41
3813 5907 6.875195 CCGTAGACCAGAAAAAGTAACCAATA 59.125 38.462 0.00 0.00 0.00 1.90
3858 5952 2.093890 CAACCAATGCAGCCACATCTA 58.906 47.619 0.00 0.00 0.00 1.98
3946 6040 9.696917 AATAATTTCATCTTGTCAAAGTTCACC 57.303 29.630 0.00 0.00 34.78 4.02
3984 6078 8.250332 TCAGTAAATTTTTACATCCATCAAGCC 58.750 33.333 13.93 0.00 44.14 4.35
3985 6079 9.638239 TTCAGTAAATTTTTACATCCATCAAGC 57.362 29.630 13.93 0.00 44.14 4.01
4007 6101 6.053650 TCACAATGCTATCAGGAAGATTCAG 58.946 40.000 0.00 0.00 38.19 3.02
4111 6205 1.339727 GCCCGAAACCCATGTAGTCTT 60.340 52.381 0.00 0.00 0.00 3.01
4129 6223 0.397535 AATCACCATCCATGTGGGCC 60.398 55.000 7.24 0.00 43.77 5.80
4204 6298 4.337555 GCAGCAGATACATTCTCCAAATGT 59.662 41.667 8.33 8.33 42.82 2.71
4240 6334 3.439857 TTCTCACCAAGCCTAGCATTT 57.560 42.857 0.00 0.00 0.00 2.32
4342 6436 3.665323 CGATTTGTTGTTGCTCTTCCTCG 60.665 47.826 0.00 0.00 0.00 4.63
4386 6480 2.642171 TTCTACACTGGGTGGAGGAT 57.358 50.000 9.65 0.00 44.09 3.24
4437 6531 2.693591 GACATCATCCAACTCGGGAGTA 59.306 50.000 1.08 0.00 41.58 2.59
4467 6564 5.574948 AACTTTAAGTTGTTCAGGGACACCT 60.575 40.000 9.77 0.00 42.11 4.00
4486 6586 7.255277 GCTAGGTCAGAAAATGTGAGAAACTTT 60.255 37.037 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.