Multiple sequence alignment - TraesCS7D01G543400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G543400 chr7D 100.000 3586 0 0 1 3586 631922471 631918886 0.000000e+00 6623
1 TraesCS7D01G543400 chr7D 82.890 2291 313 42 678 2907 631935917 631933645 0.000000e+00 1986
2 TraesCS7D01G543400 chr7D 81.527 1061 159 28 699 1748 631959879 631958845 0.000000e+00 839
3 TraesCS7D01G543400 chr7D 80.913 1095 168 21 692 1756 631968856 631967773 0.000000e+00 826
4 TraesCS7D01G543400 chr7D 78.193 1151 212 26 1794 2930 631958828 631957703 0.000000e+00 699
5 TraesCS7D01G543400 chr7D 81.446 830 137 7 1794 2611 631967764 631966940 0.000000e+00 664
6 TraesCS7D01G543400 chr7D 83.758 628 93 7 1132 1756 631964734 631964113 1.430000e-163 586
7 TraesCS7D01G543400 chr7D 82.158 241 34 8 6 240 631938082 631937845 7.850000e-47 198
8 TraesCS7D01G543400 chr7D 82.895 152 18 4 2962 3109 631966660 631966513 2.910000e-26 130
9 TraesCS7D01G543400 chr7A 90.167 2451 179 12 525 2941 736496453 736498875 0.000000e+00 3134
10 TraesCS7D01G543400 chr7A 82.530 2324 315 53 674 2930 736465476 736467775 0.000000e+00 1958
11 TraesCS7D01G543400 chr7A 85.785 605 80 5 950 1552 736445287 736445887 1.400000e-178 636
12 TraesCS7D01G543400 chr7A 86.782 522 38 4 1 520 736495883 736496375 1.450000e-153 553
13 TraesCS7D01G543400 chr7A 83.045 289 34 6 669 948 736444976 736445258 7.690000e-62 248
14 TraesCS7D01G543400 chr7A 82.645 242 30 10 6 240 736464727 736464963 1.690000e-48 204
15 TraesCS7D01G543400 chr7A 87.692 130 13 2 1 129 736451944 736452071 8.020000e-32 148
16 TraesCS7D01G543400 chr7B 82.490 2313 323 49 679 2928 743458293 743456000 0.000000e+00 1953
17 TraesCS7D01G543400 chr7B 90.772 1322 83 9 527 1811 743448414 743447095 0.000000e+00 1729
18 TraesCS7D01G543400 chr7B 90.468 1133 95 4 1811 2941 743433015 743431894 0.000000e+00 1482
19 TraesCS7D01G543400 chr7B 79.939 1316 208 38 1565 2847 743494049 743492757 0.000000e+00 917
20 TraesCS7D01G543400 chr7B 86.800 500 60 5 1054 1552 743494641 743494147 1.450000e-153 553
21 TraesCS7D01G543400 chr7B 85.905 525 52 12 4 524 743448986 743448480 1.130000e-149 540
22 TraesCS7D01G543400 chr7B 83.750 240 33 6 6 240 743459054 743458816 4.660000e-54 222
23 TraesCS7D01G543400 chr7B 87.640 178 13 6 2960 3133 743431832 743431660 7.850000e-47 198
24 TraesCS7D01G543400 chrUn 99.538 433 2 0 3154 3586 26100097 26099665 0.000000e+00 789
25 TraesCS7D01G543400 chrUn 99.538 433 2 0 3154 3586 210959670 210959238 0.000000e+00 789
26 TraesCS7D01G543400 chrUn 99.538 433 2 0 3154 3586 281413445 281413013 0.000000e+00 789
27 TraesCS7D01G543400 chrUn 99.538 433 2 0 3154 3586 382632791 382633223 0.000000e+00 789
28 TraesCS7D01G543400 chrUn 99.085 437 3 1 3150 3586 92608838 92609273 0.000000e+00 784
29 TraesCS7D01G543400 chr3D 99.538 433 2 0 3154 3586 592846388 592845956 0.000000e+00 789
30 TraesCS7D01G543400 chr3D 79.929 563 89 18 984 1533 39120678 39120127 3.360000e-105 392
31 TraesCS7D01G543400 chr2D 99.538 433 2 0 3154 3586 37514853 37514421 0.000000e+00 789
32 TraesCS7D01G543400 chr1D 99.309 434 3 0 3153 3586 6749936 6750369 0.000000e+00 785
33 TraesCS7D01G543400 chr1D 99.307 433 3 0 3154 3586 472808288 472807856 0.000000e+00 784
34 TraesCS7D01G543400 chr3B 74.571 350 71 14 2011 2351 61915716 61915376 1.740000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G543400 chr7D 631918886 631922471 3585 True 6623.0 6623 100.0000 1 3586 1 chr7D.!!$R1 3585
1 TraesCS7D01G543400 chr7D 631933645 631938082 4437 True 1092.0 1986 82.5240 6 2907 2 chr7D.!!$R2 2901
2 TraesCS7D01G543400 chr7D 631957703 631959879 2176 True 769.0 839 79.8600 699 2930 2 chr7D.!!$R3 2231
3 TraesCS7D01G543400 chr7D 631964113 631968856 4743 True 551.5 826 82.2530 692 3109 4 chr7D.!!$R4 2417
4 TraesCS7D01G543400 chr7A 736495883 736498875 2992 False 1843.5 3134 88.4745 1 2941 2 chr7A.!!$F4 2940
5 TraesCS7D01G543400 chr7A 736464727 736467775 3048 False 1081.0 1958 82.5875 6 2930 2 chr7A.!!$F3 2924
6 TraesCS7D01G543400 chr7A 736444976 736445887 911 False 442.0 636 84.4150 669 1552 2 chr7A.!!$F2 883
7 TraesCS7D01G543400 chr7B 743447095 743448986 1891 True 1134.5 1729 88.3385 4 1811 2 chr7B.!!$R2 1807
8 TraesCS7D01G543400 chr7B 743456000 743459054 3054 True 1087.5 1953 83.1200 6 2928 2 chr7B.!!$R3 2922
9 TraesCS7D01G543400 chr7B 743431660 743433015 1355 True 840.0 1482 89.0540 1811 3133 2 chr7B.!!$R1 1322
10 TraesCS7D01G543400 chr7B 743492757 743494641 1884 True 735.0 917 83.3695 1054 2847 2 chr7B.!!$R4 1793
11 TraesCS7D01G543400 chr3D 39120127 39120678 551 True 392.0 392 79.9290 984 1533 1 chr3D.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 1766 0.030908 CCGTAGCTAGAGCCTTTCCG 59.969 60.0 0.0 0.0 43.38 4.30 F
635 2206 0.035056 GACACAAGCAGGGGTAGCAT 60.035 55.0 0.0 0.0 0.00 3.79 F
637 2208 0.035152 CACAAGCAGGGGTAGCATGA 60.035 55.0 0.0 0.0 34.97 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 3900 0.035725 CCTGCTGATGTTCTGCTCCA 60.036 55.000 7.70 0.00 41.21 3.86 R
2542 4310 0.946221 CACTGACGAGGTCTTGCCAC 60.946 60.000 0.00 0.00 40.61 5.01 R
2635 4405 6.531240 CCCATGGATTATAAATTTATGCACGC 59.469 38.462 15.22 5.67 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 140 5.181433 CCAGGTTTCTAGAAAAGGCAAGTAC 59.819 44.000 19.30 4.68 31.33 2.73
185 191 2.248248 CACCAGTACAAGACTCCCTGA 58.752 52.381 0.00 0.00 35.64 3.86
232 239 6.537355 GGATGATTATCTCCAGACAAATCCA 58.463 40.000 0.00 0.00 32.79 3.41
234 241 6.566079 TGATTATCTCCAGACAAATCCAGT 57.434 37.500 9.46 0.00 32.79 4.00
243 1735 5.104569 TCCAGACAAATCCAGTGTATGCATA 60.105 40.000 1.16 1.16 36.98 3.14
274 1766 0.030908 CCGTAGCTAGAGCCTTTCCG 59.969 60.000 0.00 0.00 43.38 4.30
303 1795 4.320870 CGGTGGTAACTGATACAAAAGGT 58.679 43.478 0.00 0.00 36.14 3.50
315 1807 7.504238 ACTGATACAAAAGGTCATGGTTTTACA 59.496 33.333 0.00 0.00 0.00 2.41
344 1836 2.705658 AGATAAAGATCGGTCATGGCCA 59.294 45.455 18.31 8.56 37.15 5.36
349 1841 4.758251 TCGGTCATGGCCACGCAG 62.758 66.667 18.31 1.74 0.00 5.18
431 1923 7.031372 CACCACAACATTGAGAATTATCCTTG 58.969 38.462 0.00 0.00 0.00 3.61
467 1959 7.660030 AGCAATTAATGGTAAACTATGGCTT 57.340 32.000 0.00 0.00 38.18 4.35
505 1998 6.371278 TCTAGGGGTCATAGACTTACGAAAT 58.629 40.000 0.00 0.00 32.47 2.17
584 2153 2.512485 TTGTTTGCCTTGCATCACAG 57.488 45.000 0.00 0.00 38.76 3.66
621 2192 4.787260 ACAAAAGCATGCATATGACACA 57.213 36.364 21.98 0.00 36.36 3.72
635 2206 0.035056 GACACAAGCAGGGGTAGCAT 60.035 55.000 0.00 0.00 0.00 3.79
636 2207 0.322816 ACACAAGCAGGGGTAGCATG 60.323 55.000 0.00 0.00 36.81 4.06
637 2208 0.035152 CACAAGCAGGGGTAGCATGA 60.035 55.000 0.00 0.00 34.97 3.07
638 2209 0.698238 ACAAGCAGGGGTAGCATGAA 59.302 50.000 0.00 0.00 34.97 2.57
639 2210 1.340405 ACAAGCAGGGGTAGCATGAAG 60.340 52.381 0.00 0.00 34.97 3.02
640 2211 1.065199 CAAGCAGGGGTAGCATGAAGA 60.065 52.381 0.00 0.00 32.86 2.87
641 2212 0.835941 AGCAGGGGTAGCATGAAGAG 59.164 55.000 0.00 0.00 0.00 2.85
642 2213 0.817229 GCAGGGGTAGCATGAAGAGC 60.817 60.000 0.00 0.00 0.00 4.09
643 2214 0.543277 CAGGGGTAGCATGAAGAGCA 59.457 55.000 0.00 0.00 0.00 4.26
644 2215 0.543749 AGGGGTAGCATGAAGAGCAC 59.456 55.000 0.00 0.00 0.00 4.40
645 2216 0.253044 GGGGTAGCATGAAGAGCACA 59.747 55.000 0.00 0.00 0.00 4.57
646 2217 1.133976 GGGGTAGCATGAAGAGCACAT 60.134 52.381 0.00 0.00 0.00 3.21
647 2218 2.104792 GGGGTAGCATGAAGAGCACATA 59.895 50.000 0.00 0.00 0.00 2.29
648 2219 3.244700 GGGGTAGCATGAAGAGCACATAT 60.245 47.826 0.00 0.00 0.00 1.78
649 2220 3.750130 GGGTAGCATGAAGAGCACATATG 59.250 47.826 0.00 0.00 0.00 1.78
668 2239 9.715123 CACATATGCATACGTTAAAAAGAATGA 57.285 29.630 8.99 0.00 0.00 2.57
669 2240 9.935682 ACATATGCATACGTTAAAAAGAATGAG 57.064 29.630 8.99 0.00 0.00 2.90
672 2243 8.895932 ATGCATACGTTAAAAAGAATGAGAAC 57.104 30.769 0.00 0.00 0.00 3.01
675 2246 9.176181 GCATACGTTAAAAAGAATGAGAACAAA 57.824 29.630 0.00 0.00 0.00 2.83
680 2251 8.865001 CGTTAAAAAGAATGAGAACAAAACCAA 58.135 29.630 0.00 0.00 0.00 3.67
716 2323 2.676748 TGTCATGGCTTGGAAAGGTTT 58.323 42.857 0.00 0.00 46.35 3.27
948 2569 8.613923 TGGATATCCATAGCTCATTAAATTCCA 58.386 33.333 20.98 0.00 42.01 3.53
991 2640 5.103771 ACCCTAGAATCCATTGCAGAGAAAT 60.104 40.000 0.00 0.00 0.00 2.17
1046 2701 3.931747 AACAGAAGTTGGAGCTACCGCT 61.932 50.000 0.00 0.00 42.67 5.52
1096 2751 5.798125 GGAGATCATCAACTCCTATGTGA 57.202 43.478 0.00 0.00 46.28 3.58
1125 2780 0.815095 TGCTCGATGAAGCCTTCGTA 59.185 50.000 0.00 0.00 41.77 3.43
1308 2964 0.109723 CCACCGGAAAGGACAAGGAA 59.890 55.000 9.46 0.00 45.00 3.36
1311 2967 2.890945 CACCGGAAAGGACAAGGAAATT 59.109 45.455 9.46 0.00 45.00 1.82
1482 3142 4.619227 ACCGTCACCGCCACCAAG 62.619 66.667 0.00 0.00 0.00 3.61
1552 3300 9.330063 CATGAATTCTTAACATCCAGTAGCTAA 57.670 33.333 7.05 0.00 0.00 3.09
1553 3301 8.948631 TGAATTCTTAACATCCAGTAGCTAAG 57.051 34.615 7.05 0.00 0.00 2.18
1608 3357 6.621514 AGAATCCCCACCTGAATATTACTCTT 59.378 38.462 0.00 0.00 0.00 2.85
1613 3362 7.404980 TCCCCACCTGAATATTACTCTTAAGTT 59.595 37.037 1.63 0.00 36.92 2.66
1685 3434 1.146041 GCGGCCATGACATAGTGGA 59.854 57.895 2.24 0.00 37.72 4.02
1791 3541 0.468226 ACCGCCATGGAATGTCGTAT 59.532 50.000 18.40 0.00 45.38 3.06
1792 3542 1.134220 ACCGCCATGGAATGTCGTATT 60.134 47.619 18.40 0.00 45.38 1.89
1802 3554 6.176975 TGGAATGTCGTATTGTTTCATGAC 57.823 37.500 0.00 0.00 0.00 3.06
1841 3593 1.375326 GGAAAGGTTGACCGAGGCT 59.625 57.895 0.00 0.00 42.08 4.58
1854 3607 2.835764 ACCGAGGCTAAATGTTGGAGTA 59.164 45.455 0.00 0.00 0.00 2.59
1872 3625 0.854218 TAGAGGCCTAGGGGAGTCAG 59.146 60.000 4.42 0.00 33.58 3.51
1873 3626 2.041405 AGGCCTAGGGGAGTCAGC 60.041 66.667 1.29 0.00 33.58 4.26
1905 3658 2.431954 CCAGAGATTGGCACTTGGAT 57.568 50.000 0.00 0.00 40.87 3.41
1923 3677 1.907255 GATAGGGCCGCCTAAATACCT 59.093 52.381 9.86 0.00 0.00 3.08
1926 3680 2.129363 AGGGCCGCCTAAATACCTAAA 58.871 47.619 9.86 0.00 0.00 1.85
2001 3757 0.950836 CGACAAAAGCATCACACCCA 59.049 50.000 0.00 0.00 0.00 4.51
2144 3900 2.519771 ATGTCATGCCAATGTCCACT 57.480 45.000 0.00 0.00 35.15 4.00
2166 3922 2.413142 GCAGAACATCAGCAGGGGC 61.413 63.158 0.00 0.00 41.61 5.80
2186 3942 5.396884 GGGGCTCACTGACTTAGATACATTT 60.397 44.000 0.00 0.00 0.00 2.32
2294 4050 0.250640 GGGCTGGCTCATCGATGATT 60.251 55.000 27.43 0.00 36.02 2.57
2381 4140 1.836158 CCCAACACCACCATTGCCA 60.836 57.895 0.00 0.00 0.00 4.92
2402 4170 4.218200 CCATTCTACCAACAACATCAGCAA 59.782 41.667 0.00 0.00 0.00 3.91
2422 4190 6.431852 CAGCAAATGATGATGTATATGGGTGA 59.568 38.462 0.00 0.00 40.58 4.02
2430 4198 7.455638 TGATGATGTATATGGGTGAAGATCAGA 59.544 37.037 0.00 0.00 0.00 3.27
2462 4230 2.757077 GCTAAGCCTGGGTGTGGT 59.243 61.111 0.00 0.00 0.00 4.16
2471 4239 1.826340 CTGGGTGTGGTCCATCGTCA 61.826 60.000 0.00 0.00 33.29 4.35
2522 4290 0.250727 TGAGCAACAACTACCAGGGC 60.251 55.000 0.00 0.00 0.00 5.19
2585 4353 5.619132 ACATGAGTATGGATGACATGTGA 57.381 39.130 1.15 0.00 45.95 3.58
2648 4418 3.049206 GTGTGTGTGCGTGCATAAATTT 58.951 40.909 0.00 0.00 0.00 1.82
2658 4428 7.594386 TGTGCGTGCATAAATTTATAATCCATG 59.406 33.333 10.34 11.01 0.00 3.66
2659 4429 7.062138 GTGCGTGCATAAATTTATAATCCATGG 59.938 37.037 4.97 4.97 0.00 3.66
2726 4497 6.905076 CCGTATTTAATTTCTCATTGTGACCG 59.095 38.462 0.00 0.00 0.00 4.79
2746 4528 2.354259 GCTAGAGAGTTTGCATGCAGT 58.646 47.619 21.50 9.78 0.00 4.40
2858 4648 4.877282 TGTGTTTTAAAATACTGGCAGGC 58.123 39.130 23.09 1.26 32.11 4.85
2860 4650 3.057174 TGTTTTAAAATACTGGCAGGCGG 60.057 43.478 20.34 0.00 0.00 6.13
2864 4654 0.037590 AAATACTGGCAGGCGGACAA 59.962 50.000 20.34 0.00 30.64 3.18
2941 4749 3.181482 CCATTATATGTTTGGGCGTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
2942 4750 3.495670 TTATATGTTTGGGCGTGCAAC 57.504 42.857 0.00 0.00 0.00 4.17
2943 4751 0.530288 ATATGTTTGGGCGTGCAACC 59.470 50.000 0.00 0.00 0.00 3.77
3048 4911 9.811995 ATTTTACTTCTAAAAGTTTGGGTCAAC 57.188 29.630 0.00 0.00 43.28 3.18
3068 4934 0.527565 ATTTGTGGCGATGTCCAAGC 59.472 50.000 0.00 0.00 37.96 4.01
3076 4942 2.507102 ATGTCCAAGCGAGCGACG 60.507 61.111 0.00 0.00 45.66 5.12
3111 4977 0.675633 GTTTGAGGCATGCAACAGGT 59.324 50.000 21.36 0.00 0.00 4.00
3136 6475 0.255033 GGGCCCGGTCTACTTGAAAT 59.745 55.000 5.69 0.00 0.00 2.17
3137 6476 1.340697 GGGCCCGGTCTACTTGAAATT 60.341 52.381 5.69 0.00 0.00 1.82
3138 6477 1.743394 GGCCCGGTCTACTTGAAATTG 59.257 52.381 0.00 0.00 0.00 2.32
3139 6478 2.433436 GCCCGGTCTACTTGAAATTGT 58.567 47.619 0.00 0.00 0.00 2.71
3140 6479 3.602483 GCCCGGTCTACTTGAAATTGTA 58.398 45.455 0.00 0.00 0.00 2.41
3142 6481 3.621715 CCCGGTCTACTTGAAATTGTAGC 59.378 47.826 0.00 0.00 36.88 3.58
3144 6483 4.330074 CCGGTCTACTTGAAATTGTAGCTG 59.670 45.833 0.00 0.00 36.88 4.24
3145 6484 4.330074 CGGTCTACTTGAAATTGTAGCTGG 59.670 45.833 0.00 0.00 36.88 4.85
3146 6485 4.095036 GGTCTACTTGAAATTGTAGCTGGC 59.905 45.833 0.00 0.00 36.88 4.85
3147 6486 4.695455 GTCTACTTGAAATTGTAGCTGGCA 59.305 41.667 0.00 0.00 36.88 4.92
3149 6488 4.708726 ACTTGAAATTGTAGCTGGCATC 57.291 40.909 0.00 0.00 0.00 3.91
3151 6490 4.397417 ACTTGAAATTGTAGCTGGCATCTC 59.603 41.667 0.00 0.00 0.00 2.75
3152 6491 3.954200 TGAAATTGTAGCTGGCATCTCA 58.046 40.909 0.00 0.00 0.00 3.27
3153 6492 3.691118 TGAAATTGTAGCTGGCATCTCAC 59.309 43.478 0.00 0.00 0.00 3.51
3154 6493 3.354948 AATTGTAGCTGGCATCTCACA 57.645 42.857 0.00 0.00 0.00 3.58
3155 6494 2.099141 TTGTAGCTGGCATCTCACAC 57.901 50.000 0.00 0.00 0.00 3.82
3156 6495 1.269958 TGTAGCTGGCATCTCACACT 58.730 50.000 0.00 0.00 0.00 3.55
3157 6496 2.456577 TGTAGCTGGCATCTCACACTA 58.543 47.619 0.00 0.00 0.00 2.74
3160 6499 2.739943 AGCTGGCATCTCACACTAGTA 58.260 47.619 0.00 0.00 0.00 1.82
3161 6500 2.692557 AGCTGGCATCTCACACTAGTAG 59.307 50.000 0.00 0.00 0.00 2.57
3162 6501 2.690497 GCTGGCATCTCACACTAGTAGA 59.310 50.000 3.59 0.00 0.00 2.59
3163 6502 3.131223 GCTGGCATCTCACACTAGTAGAA 59.869 47.826 3.59 0.00 0.00 2.10
3164 6503 4.382040 GCTGGCATCTCACACTAGTAGAAA 60.382 45.833 3.59 0.00 0.00 2.52
3165 6504 5.724328 CTGGCATCTCACACTAGTAGAAAA 58.276 41.667 3.59 0.00 0.00 2.29
3166 6505 5.479306 TGGCATCTCACACTAGTAGAAAAC 58.521 41.667 3.59 0.00 0.00 2.43
3167 6506 4.563184 GGCATCTCACACTAGTAGAAAACG 59.437 45.833 3.59 0.00 0.00 3.60
3168 6507 4.563184 GCATCTCACACTAGTAGAAAACGG 59.437 45.833 3.59 0.00 0.00 4.44
3169 6508 4.778534 TCTCACACTAGTAGAAAACGGG 57.221 45.455 3.59 0.00 0.00 5.28
3170 6509 3.508793 TCTCACACTAGTAGAAAACGGGG 59.491 47.826 3.59 0.00 0.00 5.73
3171 6510 2.028748 TCACACTAGTAGAAAACGGGGC 60.029 50.000 3.59 0.00 0.00 5.80
3174 6513 3.181452 ACACTAGTAGAAAACGGGGCAAA 60.181 43.478 3.59 0.00 0.00 3.68
3175 6514 3.435671 CACTAGTAGAAAACGGGGCAAAG 59.564 47.826 3.59 0.00 0.00 2.77
3176 6515 1.905637 AGTAGAAAACGGGGCAAAGG 58.094 50.000 0.00 0.00 0.00 3.11
3177 6516 1.144298 AGTAGAAAACGGGGCAAAGGT 59.856 47.619 0.00 0.00 0.00 3.50
3178 6517 1.538512 GTAGAAAACGGGGCAAAGGTC 59.461 52.381 0.00 0.00 0.00 3.85
3179 6518 0.106419 AGAAAACGGGGCAAAGGTCA 60.106 50.000 0.00 0.00 0.00 4.02
3180 6519 0.031585 GAAAACGGGGCAAAGGTCAC 59.968 55.000 0.00 0.00 0.00 3.67
3181 6520 0.684805 AAAACGGGGCAAAGGTCACA 60.685 50.000 0.00 0.00 0.00 3.58
3182 6521 1.106944 AAACGGGGCAAAGGTCACAG 61.107 55.000 0.00 0.00 0.00 3.66
3183 6522 2.672996 CGGGGCAAAGGTCACAGG 60.673 66.667 0.00 0.00 0.00 4.00
3184 6523 2.283173 GGGGCAAAGGTCACAGGG 60.283 66.667 0.00 0.00 0.00 4.45
3186 6525 2.203480 GGCAAAGGTCACAGGGCA 60.203 61.111 0.00 0.00 0.00 5.36
3198 6561 3.568007 GTCACAGGGCAGTTTTCACATTA 59.432 43.478 0.00 0.00 0.00 1.90
3199 6562 3.820467 TCACAGGGCAGTTTTCACATTAG 59.180 43.478 0.00 0.00 0.00 1.73
3201 6564 2.094545 CAGGGCAGTTTTCACATTAGCC 60.095 50.000 0.00 0.00 39.86 3.93
3203 6566 1.204704 GGCAGTTTTCACATTAGCCCC 59.795 52.381 0.00 0.00 34.71 5.80
3204 6567 1.135402 GCAGTTTTCACATTAGCCCCG 60.135 52.381 0.00 0.00 0.00 5.73
3205 6568 1.472480 CAGTTTTCACATTAGCCCCGG 59.528 52.381 0.00 0.00 0.00 5.73
3206 6569 1.074889 AGTTTTCACATTAGCCCCGGT 59.925 47.619 0.00 0.00 0.00 5.28
3208 6571 1.828979 TTTCACATTAGCCCCGGTTC 58.171 50.000 0.00 0.00 0.00 3.62
3209 6572 0.693622 TTCACATTAGCCCCGGTTCA 59.306 50.000 0.00 0.00 0.00 3.18
3210 6573 0.251916 TCACATTAGCCCCGGTTCAG 59.748 55.000 0.00 0.00 0.00 3.02
3211 6574 0.035439 CACATTAGCCCCGGTTCAGT 60.035 55.000 0.00 0.00 0.00 3.41
3212 6575 0.252197 ACATTAGCCCCGGTTCAGTC 59.748 55.000 0.00 0.00 0.00 3.51
3213 6576 0.251916 CATTAGCCCCGGTTCAGTCA 59.748 55.000 0.00 0.00 0.00 3.41
3214 6577 0.252197 ATTAGCCCCGGTTCAGTCAC 59.748 55.000 0.00 0.00 0.00 3.67
3215 6578 2.162338 TTAGCCCCGGTTCAGTCACG 62.162 60.000 0.00 0.00 0.00 4.35
3216 6579 3.998672 GCCCCGGTTCAGTCACGA 61.999 66.667 0.00 0.00 0.00 4.35
3217 6580 2.738480 CCCCGGTTCAGTCACGAA 59.262 61.111 0.00 0.00 0.00 3.85
3222 6585 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
3223 6586 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
3228 6591 2.605295 TCACGAACCGGGACCCAT 60.605 61.111 12.15 0.00 32.99 4.00
3230 6593 1.143183 CACGAACCGGGACCCATAG 59.857 63.158 12.15 0.47 28.17 2.23
3242 6605 4.800554 CCATAGGGGCATTCGTCC 57.199 61.111 0.00 0.00 35.48 4.79
3248 6611 2.822701 GGGCATTCGTCCCGGTTC 60.823 66.667 0.00 0.00 33.43 3.62
3249 6612 3.192922 GGCATTCGTCCCGGTTCG 61.193 66.667 0.00 4.79 0.00 3.95
3251 6614 2.736682 GCATTCGTCCCGGTTCGTG 61.737 63.158 13.60 8.10 0.00 4.35
3252 6615 1.080366 CATTCGTCCCGGTTCGTGA 60.080 57.895 13.60 6.24 0.00 4.35
3253 6616 1.076533 CATTCGTCCCGGTTCGTGAG 61.077 60.000 13.60 3.53 0.00 3.51
3254 6617 2.830704 ATTCGTCCCGGTTCGTGAGC 62.831 60.000 13.60 0.00 0.00 4.26
3258 6621 4.760047 CCCGGTTCGTGAGCCCAG 62.760 72.222 0.00 0.00 0.00 4.45
3259 6622 4.760047 CCGGTTCGTGAGCCCAGG 62.760 72.222 0.00 0.00 0.00 4.45
3260 6623 4.760047 CGGTTCGTGAGCCCAGGG 62.760 72.222 0.00 0.00 0.00 4.45
3261 6624 4.410400 GGTTCGTGAGCCCAGGGG 62.410 72.222 7.91 3.48 38.57 4.79
3292 6655 4.402528 TCGTGGGCATTGGTCCCG 62.403 66.667 0.00 0.00 46.92 5.14
3294 6657 4.360405 GTGGGCATTGGTCCCGGT 62.360 66.667 0.00 0.00 46.92 5.28
3295 6658 3.585428 TGGGCATTGGTCCCGGTT 61.585 61.111 0.00 0.00 46.92 4.44
3297 6660 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
3298 6661 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
3300 6663 0.463116 GCATTGGTCCCGGTTCGTAT 60.463 55.000 0.00 0.00 0.00 3.06
3301 6664 1.295792 CATTGGTCCCGGTTCGTATG 58.704 55.000 0.00 0.00 0.00 2.39
3302 6665 0.179468 ATTGGTCCCGGTTCGTATGG 59.821 55.000 0.00 0.00 0.00 2.74
3303 6666 0.903924 TTGGTCCCGGTTCGTATGGA 60.904 55.000 0.00 0.00 0.00 3.41
3304 6667 0.903924 TGGTCCCGGTTCGTATGGAA 60.904 55.000 0.00 0.00 0.00 3.53
3315 6678 2.993937 TCGTATGGAACCATTTGTCCC 58.006 47.619 11.68 0.00 37.82 4.46
3316 6679 1.668751 CGTATGGAACCATTTGTCCCG 59.331 52.381 11.68 2.53 37.82 5.14
3317 6680 2.021457 GTATGGAACCATTTGTCCCGG 58.979 52.381 11.68 0.00 37.82 5.73
3318 6681 0.407918 ATGGAACCATTTGTCCCGGT 59.592 50.000 0.00 0.00 31.82 5.28
3319 6682 0.186386 TGGAACCATTTGTCCCGGTT 59.814 50.000 0.00 0.00 45.64 4.44
3321 6684 0.519961 GAACCATTTGTCCCGGTTCG 59.480 55.000 0.00 0.00 46.63 3.95
3322 6685 0.108963 AACCATTTGTCCCGGTTCGA 59.891 50.000 0.00 0.00 38.69 3.71
3323 6686 0.321298 ACCATTTGTCCCGGTTCGAG 60.321 55.000 0.00 0.00 0.00 4.04
3324 6687 1.644786 CCATTTGTCCCGGTTCGAGC 61.645 60.000 0.00 0.00 0.00 5.03
3325 6688 1.376812 ATTTGTCCCGGTTCGAGCC 60.377 57.895 8.48 8.48 0.00 4.70
3326 6689 2.119484 ATTTGTCCCGGTTCGAGCCA 62.119 55.000 19.03 0.00 0.00 4.75
3327 6690 2.999739 TTTGTCCCGGTTCGAGCCAC 63.000 60.000 19.03 9.54 0.00 5.01
3338 6701 3.692406 GAGCCACGAACCGGGACT 61.692 66.667 6.32 0.00 28.17 3.85
3339 6702 2.283388 AGCCACGAACCGGGACTA 60.283 61.111 6.32 0.00 28.17 2.59
3340 6703 1.880819 GAGCCACGAACCGGGACTAA 61.881 60.000 6.32 0.00 28.17 2.24
3341 6704 1.219935 GCCACGAACCGGGACTAAT 59.780 57.895 6.32 0.00 28.17 1.73
3343 6706 0.461339 CCACGAACCGGGACTAATGG 60.461 60.000 6.32 1.45 28.17 3.16
3345 6708 0.533951 ACGAACCGGGACTAATGGTC 59.466 55.000 6.32 0.00 43.79 4.02
3353 6716 3.969995 GACTAATGGTCCTCGCTCC 57.030 57.895 0.00 0.00 38.93 4.70
3357 6720 1.686325 TAATGGTCCTCGCTCCTGGC 61.686 60.000 0.00 0.00 37.64 4.85
3364 6727 4.329545 TCGCTCCTGGCCCACAAC 62.330 66.667 0.00 0.00 37.74 3.32
3366 6729 4.284550 GCTCCTGGCCCACAACCA 62.285 66.667 0.00 0.00 35.40 3.67
3367 6730 2.765969 CTCCTGGCCCACAACCAT 59.234 61.111 0.00 0.00 36.36 3.55
3368 6731 1.077265 CTCCTGGCCCACAACCATT 59.923 57.895 0.00 0.00 36.36 3.16
3369 6732 0.542702 CTCCTGGCCCACAACCATTT 60.543 55.000 0.00 0.00 36.36 2.32
3370 6733 0.831288 TCCTGGCCCACAACCATTTG 60.831 55.000 0.00 0.00 36.36 2.32
3372 6735 0.318120 CTGGCCCACAACCATTTGTC 59.682 55.000 0.00 0.00 44.57 3.18
3373 6736 1.118356 TGGCCCACAACCATTTGTCC 61.118 55.000 0.00 0.00 44.57 4.02
3375 6738 1.963679 CCCACAACCATTTGTCCCG 59.036 57.895 0.00 0.00 44.57 5.14
3376 6739 1.531739 CCCACAACCATTTGTCCCGG 61.532 60.000 0.00 0.00 44.57 5.73
3377 6740 0.825840 CCACAACCATTTGTCCCGGT 60.826 55.000 0.00 0.00 44.57 5.28
3378 6741 1.036707 CACAACCATTTGTCCCGGTT 58.963 50.000 0.00 0.00 44.57 4.44
3379 6742 1.000717 CACAACCATTTGTCCCGGTTC 60.001 52.381 0.00 0.00 44.57 3.62
3383 6746 0.887933 CCATTTGTCCCGGTTCTTGG 59.112 55.000 0.00 0.00 0.00 3.61
3385 6748 0.178975 ATTTGTCCCGGTTCTTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
3386 6749 0.178975 TTTGTCCCGGTTCTTGGCAT 60.179 50.000 0.00 0.00 0.00 4.40
3387 6750 0.893270 TTGTCCCGGTTCTTGGCATG 60.893 55.000 0.00 0.00 0.00 4.06
3389 6752 0.608035 GTCCCGGTTCTTGGCATGAA 60.608 55.000 11.38 11.38 0.00 2.57
3390 6753 0.608035 TCCCGGTTCTTGGCATGAAC 60.608 55.000 28.54 28.54 42.00 3.18
3394 6757 1.883021 GTTCTTGGCATGAACCGGG 59.117 57.895 27.05 0.00 38.19 5.73
3395 6758 0.608035 GTTCTTGGCATGAACCGGGA 60.608 55.000 27.05 1.22 38.19 5.14
3396 6759 0.608035 TTCTTGGCATGAACCGGGAC 60.608 55.000 6.32 0.00 0.00 4.46
3397 6760 1.303236 CTTGGCATGAACCGGGACA 60.303 57.895 6.32 5.75 0.00 4.02
3398 6761 1.303236 TTGGCATGAACCGGGACAG 60.303 57.895 6.32 1.30 0.00 3.51
3399 6762 1.773856 TTGGCATGAACCGGGACAGA 61.774 55.000 6.32 0.00 0.00 3.41
3400 6763 1.002624 GGCATGAACCGGGACAGAA 60.003 57.895 6.32 0.00 0.00 3.02
3401 6764 1.026718 GGCATGAACCGGGACAGAAG 61.027 60.000 6.32 1.42 0.00 2.85
3402 6765 1.026718 GCATGAACCGGGACAGAAGG 61.027 60.000 6.32 0.00 0.00 3.46
3403 6766 1.026718 CATGAACCGGGACAGAAGGC 61.027 60.000 6.32 0.00 0.00 4.35
3404 6767 2.046217 GAACCGGGACAGAAGGCC 60.046 66.667 6.32 0.00 0.00 5.19
3405 6768 3.623703 GAACCGGGACAGAAGGCCC 62.624 68.421 6.32 0.00 41.11 5.80
3411 6774 1.303282 GGACAGAAGGCCCGGATTT 59.697 57.895 0.73 0.00 0.00 2.17
3413 6776 1.475213 GGACAGAAGGCCCGGATTTAG 60.475 57.143 0.73 0.00 0.00 1.85
3414 6777 1.209747 GACAGAAGGCCCGGATTTAGT 59.790 52.381 0.73 0.00 0.00 2.24
3416 6779 2.169978 ACAGAAGGCCCGGATTTAGTAC 59.830 50.000 0.73 0.00 0.00 2.73
3417 6780 1.767088 AGAAGGCCCGGATTTAGTACC 59.233 52.381 0.73 0.00 0.00 3.34
3426 6789 2.542595 CGGATTTAGTACCGGTTCATGC 59.457 50.000 15.04 1.59 44.59 4.06
3427 6790 2.876550 GGATTTAGTACCGGTTCATGCC 59.123 50.000 15.04 2.33 0.00 4.40
3428 6791 3.537580 GATTTAGTACCGGTTCATGCCA 58.462 45.455 15.04 0.00 0.00 4.92
3429 6792 2.389962 TTAGTACCGGTTCATGCCAC 57.610 50.000 15.04 1.99 0.00 5.01
3432 6795 0.671163 GTACCGGTTCATGCCACGAA 60.671 55.000 15.04 0.00 0.00 3.85
3436 6799 2.867472 GTTCATGCCACGAACCGG 59.133 61.111 0.00 0.00 37.40 5.28
3437 6800 2.359354 TTCATGCCACGAACCGGG 60.359 61.111 6.32 0.00 0.00 5.73
3439 6802 3.124921 CATGCCACGAACCGGGAC 61.125 66.667 6.32 0.00 28.17 4.46
3440 6803 4.404098 ATGCCACGAACCGGGACC 62.404 66.667 6.32 0.00 28.17 4.46
3443 6806 2.349755 CCACGAACCGGGACCAAT 59.650 61.111 6.32 0.00 28.17 3.16
3445 6808 1.004320 CACGAACCGGGACCAATGA 60.004 57.895 6.32 0.00 28.17 2.57
3446 6809 1.019278 CACGAACCGGGACCAATGAG 61.019 60.000 6.32 0.00 28.17 2.90
3468 6869 3.244112 GGTGCCTATATATACCCCATCGC 60.244 52.174 0.00 0.00 0.00 4.58
3469 6870 2.969950 TGCCTATATATACCCCATCGCC 59.030 50.000 0.00 0.00 0.00 5.54
3471 6872 3.244112 GCCTATATATACCCCATCGCCAC 60.244 52.174 0.00 0.00 0.00 5.01
3472 6873 3.005472 CCTATATATACCCCATCGCCACG 59.995 52.174 0.00 0.00 0.00 4.94
3473 6874 1.187974 TATATACCCCATCGCCACGG 58.812 55.000 0.00 0.00 0.00 4.94
3474 6875 2.180159 ATATACCCCATCGCCACGGC 62.180 60.000 0.00 0.00 37.85 5.68
3485 6886 4.007644 CCACGGCAGAGCACTCCA 62.008 66.667 0.00 0.00 0.00 3.86
3486 6887 2.740055 CACGGCAGAGCACTCCAC 60.740 66.667 0.00 0.00 0.00 4.02
3487 6888 3.233980 ACGGCAGAGCACTCCACA 61.234 61.111 0.00 0.00 0.00 4.17
3488 6889 2.433838 CGGCAGAGCACTCCACAG 60.434 66.667 0.00 0.00 0.00 3.66
3506 6907 3.892918 CAGTGCTCTGTTTTTCTCTGG 57.107 47.619 7.63 0.00 36.97 3.86
3507 6908 2.031333 CAGTGCTCTGTTTTTCTCTGGC 60.031 50.000 7.63 0.00 36.97 4.85
3508 6909 1.268079 GTGCTCTGTTTTTCTCTGGCC 59.732 52.381 0.00 0.00 0.00 5.36
3510 6911 1.160137 CTCTGTTTTTCTCTGGCCGG 58.840 55.000 4.71 4.71 0.00 6.13
3512 6913 2.187599 CTGTTTTTCTCTGGCCGGCG 62.188 60.000 22.54 7.85 0.00 6.46
3513 6914 1.964373 GTTTTTCTCTGGCCGGCGA 60.964 57.895 22.54 17.25 0.00 5.54
3514 6915 1.671054 TTTTTCTCTGGCCGGCGAG 60.671 57.895 30.61 30.61 0.00 5.03
3527 6928 4.035102 GCGAGGGGAGGGCTTTGT 62.035 66.667 0.00 0.00 0.00 2.83
3528 6929 2.045926 CGAGGGGAGGGCTTTGTG 60.046 66.667 0.00 0.00 0.00 3.33
3530 6931 2.452491 AGGGGAGGGCTTTGTGGT 60.452 61.111 0.00 0.00 0.00 4.16
3531 6932 2.283173 GGGGAGGGCTTTGTGGTG 60.283 66.667 0.00 0.00 0.00 4.17
3534 6935 1.973812 GGAGGGCTTTGTGGTGCTC 60.974 63.158 0.00 0.00 0.00 4.26
3535 6936 1.073897 GAGGGCTTTGTGGTGCTCT 59.926 57.895 0.00 0.00 43.51 4.09
3536 6937 0.324943 GAGGGCTTTGTGGTGCTCTA 59.675 55.000 0.00 0.00 40.52 2.43
3537 6938 0.326264 AGGGCTTTGTGGTGCTCTAG 59.674 55.000 0.00 0.00 38.38 2.43
3539 6940 0.322008 GGCTTTGTGGTGCTCTAGCT 60.322 55.000 3.26 0.00 42.66 3.32
3547 7104 0.686112 GGTGCTCTAGCTCACCTCCT 60.686 60.000 19.69 0.00 46.90 3.69
3548 7105 1.410365 GGTGCTCTAGCTCACCTCCTA 60.410 57.143 19.69 0.00 46.90 2.94
3549 7106 2.593026 GTGCTCTAGCTCACCTCCTAT 58.407 52.381 3.26 0.00 42.66 2.57
3552 7109 2.591923 CTCTAGCTCACCTCCTATGCA 58.408 52.381 0.00 0.00 0.00 3.96
3555 7112 1.504912 AGCTCACCTCCTATGCACAT 58.495 50.000 0.00 0.00 0.00 3.21
3556 7113 1.140452 AGCTCACCTCCTATGCACATG 59.860 52.381 0.00 0.00 0.00 3.21
3574 7131 3.127548 ACATGAGGTGTTCGATGAAATGC 59.872 43.478 0.00 0.00 38.01 3.56
3575 7132 2.083774 TGAGGTGTTCGATGAAATGCC 58.916 47.619 0.00 0.00 0.00 4.40
3576 7133 1.401905 GAGGTGTTCGATGAAATGCCC 59.598 52.381 0.00 0.00 0.00 5.36
3577 7134 0.098728 GGTGTTCGATGAAATGCCCG 59.901 55.000 0.00 0.00 0.00 6.13
3578 7135 1.083489 GTGTTCGATGAAATGCCCGA 58.917 50.000 0.00 0.00 0.00 5.14
3579 7136 1.062587 GTGTTCGATGAAATGCCCGAG 59.937 52.381 0.00 0.00 32.41 4.63
3580 7137 0.028110 GTTCGATGAAATGCCCGAGC 59.972 55.000 0.00 0.00 40.48 5.03
3581 7138 1.095228 TTCGATGAAATGCCCGAGCC 61.095 55.000 0.00 0.00 38.69 4.70
3582 7139 1.819208 CGATGAAATGCCCGAGCCA 60.819 57.895 0.00 0.00 38.69 4.75
3583 7140 1.729881 GATGAAATGCCCGAGCCAC 59.270 57.895 0.00 0.00 38.69 5.01
3585 7142 1.315257 ATGAAATGCCCGAGCCACAC 61.315 55.000 0.00 0.00 38.69 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 185 6.916360 ATGTTTTTATCTGCTTTTCAGGGA 57.084 33.333 0.00 0.00 43.06 4.20
203 210 6.918067 TGTCTGGAGATAATCATCCGTTAT 57.082 37.500 0.00 0.00 38.52 1.89
232 239 4.823989 GCTGAATTCCCTTATGCATACACT 59.176 41.667 5.74 0.00 0.00 3.55
234 241 4.144297 GGCTGAATTCCCTTATGCATACA 58.856 43.478 5.74 0.00 0.00 2.29
243 1735 3.478540 GCTACGGCTGAATTCCCTT 57.521 52.632 0.00 0.00 35.22 3.95
269 1761 3.702048 CCACCGGGAGAGCGGAAA 61.702 66.667 6.32 0.00 35.59 3.13
274 1766 1.218316 CAGTTACCACCGGGAGAGC 59.782 63.158 6.32 0.00 38.05 4.09
303 1795 2.552599 TCCGCTGTGTAAAACCATGA 57.447 45.000 0.00 0.00 0.00 3.07
315 1807 2.431057 ACCGATCTTTATCTTCCGCTGT 59.569 45.455 0.00 0.00 0.00 4.40
467 1959 4.108570 ACCCCTAGATTGATTGTACACCA 58.891 43.478 0.00 0.00 0.00 4.17
520 2015 5.423290 AGCTGGATGTGCATATATAGCTACA 59.577 40.000 23.50 1.17 38.38 2.74
521 2016 5.752472 CAGCTGGATGTGCATATATAGCTAC 59.248 44.000 23.98 1.65 38.11 3.58
522 2017 5.163374 CCAGCTGGATGTGCATATATAGCTA 60.163 44.000 29.88 0.00 38.11 3.32
584 2153 3.518634 TTTGTTTCTGGTGTTTGGCTC 57.481 42.857 0.00 0.00 0.00 4.70
621 2192 1.211457 CTCTTCATGCTACCCCTGCTT 59.789 52.381 0.00 0.00 0.00 3.91
642 2213 9.715123 TCATTCTTTTTAACGTATGCATATGTG 57.285 29.630 27.92 16.23 33.07 3.21
643 2214 9.935682 CTCATTCTTTTTAACGTATGCATATGT 57.064 29.630 23.14 23.14 34.12 2.29
646 2217 9.982291 GTTCTCATTCTTTTTAACGTATGCATA 57.018 29.630 1.16 1.16 0.00 3.14
647 2218 8.511321 TGTTCTCATTCTTTTTAACGTATGCAT 58.489 29.630 3.79 3.79 0.00 3.96
648 2219 7.866729 TGTTCTCATTCTTTTTAACGTATGCA 58.133 30.769 0.00 0.00 0.00 3.96
649 2220 8.722342 TTGTTCTCATTCTTTTTAACGTATGC 57.278 30.769 0.00 0.00 0.00 3.14
652 2223 9.505995 GGTTTTGTTCTCATTCTTTTTAACGTA 57.494 29.630 0.00 0.00 0.00 3.57
653 2224 8.030106 TGGTTTTGTTCTCATTCTTTTTAACGT 58.970 29.630 0.00 0.00 0.00 3.99
654 2225 8.401046 TGGTTTTGTTCTCATTCTTTTTAACG 57.599 30.769 0.00 0.00 0.00 3.18
656 2227 9.936759 ACTTGGTTTTGTTCTCATTCTTTTTAA 57.063 25.926 0.00 0.00 0.00 1.52
659 2230 9.533253 CATACTTGGTTTTGTTCTCATTCTTTT 57.467 29.630 0.00 0.00 0.00 2.27
660 2231 7.653311 GCATACTTGGTTTTGTTCTCATTCTTT 59.347 33.333 0.00 0.00 0.00 2.52
661 2232 7.147976 GCATACTTGGTTTTGTTCTCATTCTT 58.852 34.615 0.00 0.00 0.00 2.52
662 2233 6.265196 TGCATACTTGGTTTTGTTCTCATTCT 59.735 34.615 0.00 0.00 0.00 2.40
663 2234 6.446318 TGCATACTTGGTTTTGTTCTCATTC 58.554 36.000 0.00 0.00 0.00 2.67
664 2235 6.403866 TGCATACTTGGTTTTGTTCTCATT 57.596 33.333 0.00 0.00 0.00 2.57
665 2236 6.403866 TTGCATACTTGGTTTTGTTCTCAT 57.596 33.333 0.00 0.00 0.00 2.90
666 2237 5.843673 TTGCATACTTGGTTTTGTTCTCA 57.156 34.783 0.00 0.00 0.00 3.27
667 2238 6.583806 CAGATTGCATACTTGGTTTTGTTCTC 59.416 38.462 0.00 0.00 0.00 2.87
668 2239 6.449698 CAGATTGCATACTTGGTTTTGTTCT 58.550 36.000 0.00 0.00 0.00 3.01
669 2240 5.634859 CCAGATTGCATACTTGGTTTTGTTC 59.365 40.000 0.00 0.00 0.00 3.18
670 2241 5.540911 CCAGATTGCATACTTGGTTTTGTT 58.459 37.500 0.00 0.00 0.00 2.83
671 2242 4.561326 GCCAGATTGCATACTTGGTTTTGT 60.561 41.667 8.31 0.00 0.00 2.83
672 2243 3.928375 GCCAGATTGCATACTTGGTTTTG 59.072 43.478 8.31 0.00 0.00 2.44
675 2246 2.806434 TGCCAGATTGCATACTTGGTT 58.194 42.857 8.31 0.00 36.04 3.67
716 2323 4.021368 GGTGACAAGTAGCTAGGTTTCTCA 60.021 45.833 0.00 0.00 0.00 3.27
762 2369 4.519540 ACAACTATGCATTGTTTGTCCC 57.480 40.909 21.50 0.00 36.93 4.46
948 2569 2.590821 GTGATGGCAATATTGGAGGCT 58.409 47.619 17.02 0.00 0.00 4.58
991 2640 0.178906 TGGTCTGTCATGGTGGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
1096 2751 0.982852 TCATCGAGCACCTTGGGGAT 60.983 55.000 0.00 0.00 36.25 3.85
1125 2780 1.449601 ATCTTCAATCGCCGCGGTT 60.450 52.632 28.70 9.67 0.00 4.44
1271 2927 1.095807 GGCCTTCCAATAGCCGACAC 61.096 60.000 0.00 0.00 36.84 3.67
1308 2964 0.178975 TGAGTGGCGGGTGGAAAATT 60.179 50.000 0.00 0.00 0.00 1.82
1311 2967 2.112297 GTGAGTGGCGGGTGGAAA 59.888 61.111 0.00 0.00 0.00 3.13
1323 2979 2.895680 ATGCCGATGAGCGTGAGT 59.104 55.556 0.00 0.00 38.67 3.41
1379 3039 1.296715 CAGTTGGTCTTCTCCCCCG 59.703 63.158 0.00 0.00 0.00 5.73
1432 3092 0.741221 GACGGGTTGGATGTCAGCTC 60.741 60.000 0.00 0.00 32.91 4.09
1482 3142 3.412237 TTATATACCTTGGAAGCCGCC 57.588 47.619 0.00 0.00 0.00 6.13
1582 3331 6.621514 AGAGTAATATTCAGGTGGGGATTCTT 59.378 38.462 0.00 0.00 0.00 2.52
1701 3450 9.838339 CTCTCTTTTACCCATACATTCAAGTAT 57.162 33.333 0.00 0.00 35.14 2.12
1757 3507 1.135721 GGCGGTATTTACTCACCTCGT 59.864 52.381 0.00 0.00 32.29 4.18
1841 3593 4.654262 CCTAGGCCTCTACTCCAACATTTA 59.346 45.833 9.68 0.00 0.00 1.40
1854 3607 1.623625 CTGACTCCCCTAGGCCTCT 59.376 63.158 9.68 0.00 28.59 3.69
1905 3658 2.700353 TAGGTATTTAGGCGGCCCTA 57.300 50.000 17.02 5.25 42.87 3.53
1923 3677 7.777440 TGTTCAGCACACATATCCCATAATTTA 59.223 33.333 0.00 0.00 0.00 1.40
1926 3680 5.693961 TGTTCAGCACACATATCCCATAAT 58.306 37.500 0.00 0.00 0.00 1.28
1938 3692 1.069432 CACTGCTCATGTTCAGCACAC 60.069 52.381 14.00 0.00 42.09 3.82
2001 3757 3.246301 ACTATGATCAGTAGCATGCCCT 58.754 45.455 15.66 7.97 32.88 5.19
2045 3801 3.270877 CCACTGTTCCTACAAGCATACC 58.729 50.000 0.00 0.00 32.92 2.73
2144 3900 0.035725 CCTGCTGATGTTCTGCTCCA 60.036 55.000 7.70 0.00 41.21 3.86
2166 3922 7.069331 AGGAGGAAATGTATCTAAGTCAGTGAG 59.931 40.741 0.00 0.00 0.00 3.51
2169 3925 7.129425 AGAGGAGGAAATGTATCTAAGTCAGT 58.871 38.462 0.00 0.00 0.00 3.41
2171 3927 7.126061 TGAGAGGAGGAAATGTATCTAAGTCA 58.874 38.462 0.00 0.00 0.00 3.41
2186 3942 3.205282 TGTCATAGTCCATGAGAGGAGGA 59.795 47.826 0.00 0.00 44.42 3.71
2344 4100 2.614987 GGGTCTGATATCATCTGCTGGC 60.615 54.545 5.72 0.00 0.00 4.85
2381 4140 6.209192 TCATTTGCTGATGTTGTTGGTAGAAT 59.791 34.615 0.00 0.00 0.00 2.40
2402 4170 8.608598 TGATCTTCACCCATATACATCATCATT 58.391 33.333 0.00 0.00 0.00 2.57
2422 4190 3.369892 CCCGACCATGAAACTCTGATCTT 60.370 47.826 0.00 0.00 0.00 2.40
2430 4198 0.988832 TTAGCCCCGACCATGAAACT 59.011 50.000 0.00 0.00 0.00 2.66
2471 4239 1.340405 GCATCCTCCTGTGACACCATT 60.340 52.381 2.45 0.00 0.00 3.16
2542 4310 0.946221 CACTGACGAGGTCTTGCCAC 60.946 60.000 0.00 0.00 40.61 5.01
2585 4353 9.775854 CTTGGATTATCTGATCATCAGTACTTT 57.224 33.333 14.56 0.00 44.58 2.66
2613 4381 6.981559 ACGCACACACACACATATATATGTTA 59.018 34.615 23.03 0.00 43.99 2.41
2634 4404 7.089538 CCATGGATTATAAATTTATGCACGCA 58.910 34.615 18.98 0.00 0.00 5.24
2635 4405 6.531240 CCCATGGATTATAAATTTATGCACGC 59.469 38.462 15.22 5.67 0.00 5.34
2648 4418 2.600790 ACGACCGTCCCATGGATTATA 58.399 47.619 15.22 0.00 32.73 0.98
2658 4428 2.415090 CCATATATCGAACGACCGTCCC 60.415 54.545 0.00 0.00 0.00 4.46
2659 4429 2.860062 CCATATATCGAACGACCGTCC 58.140 52.381 0.00 0.00 0.00 4.79
2726 4497 2.351111 GACTGCATGCAAACTCTCTAGC 59.649 50.000 22.88 0.00 0.00 3.42
2746 4528 2.182827 ACTAGCACAAGAGAGGCATGA 58.817 47.619 0.00 0.00 0.00 3.07
2858 4648 4.621034 GGTTTAAAAGATGCATGTTGTCCG 59.379 41.667 10.21 0.00 0.00 4.79
2860 4650 8.028938 ACATAGGTTTAAAAGATGCATGTTGTC 58.971 33.333 10.21 0.00 0.00 3.18
2911 4701 6.348498 GCCCAAACATATAATGGAAAAGCTT 58.652 36.000 0.00 0.00 36.27 3.74
2913 4704 4.744631 CGCCCAAACATATAATGGAAAAGC 59.255 41.667 2.91 0.00 36.27 3.51
2914 4705 5.748152 CACGCCCAAACATATAATGGAAAAG 59.252 40.000 2.91 0.00 36.27 2.27
2941 4749 0.253160 TGGCAATCCCTCTAGGTGGT 60.253 55.000 0.00 0.00 36.75 4.16
2942 4750 1.143813 ATGGCAATCCCTCTAGGTGG 58.856 55.000 0.00 0.00 36.75 4.61
2943 4751 2.705658 TGTATGGCAATCCCTCTAGGTG 59.294 50.000 0.00 0.00 36.75 4.00
3028 4891 7.763985 ACAAATGTTGACCCAAACTTTTAGAAG 59.236 33.333 0.00 0.00 36.07 2.85
3030 4893 7.038659 CACAAATGTTGACCCAAACTTTTAGA 58.961 34.615 0.00 0.00 36.07 2.10
3032 4895 6.109359 CCACAAATGTTGACCCAAACTTTTA 58.891 36.000 0.00 0.00 36.07 1.52
3036 4899 2.158971 GCCACAAATGTTGACCCAAACT 60.159 45.455 0.00 0.00 0.00 2.66
3043 4906 2.584791 GACATCGCCACAAATGTTGAC 58.415 47.619 0.00 0.00 36.28 3.18
3044 4907 1.539388 GGACATCGCCACAAATGTTGA 59.461 47.619 0.00 0.00 36.28 3.18
3045 4908 1.269174 TGGACATCGCCACAAATGTTG 59.731 47.619 0.00 0.00 36.28 3.33
3048 4911 1.733389 GCTTGGACATCGCCACAAATG 60.733 52.381 0.00 0.00 37.75 2.32
3076 4942 3.664107 TCAAACTGATGGTGTAGAGCAC 58.336 45.455 0.00 0.00 46.97 4.40
3111 4977 2.039787 TAGACCGGGCCCATGTCA 59.960 61.111 32.28 20.31 0.00 3.58
3136 6475 1.625315 AGTGTGAGATGCCAGCTACAA 59.375 47.619 0.00 0.00 0.00 2.41
3137 6476 1.269958 AGTGTGAGATGCCAGCTACA 58.730 50.000 0.00 0.00 0.00 2.74
3138 6477 2.428890 ACTAGTGTGAGATGCCAGCTAC 59.571 50.000 0.00 0.00 0.00 3.58
3139 6478 2.739943 ACTAGTGTGAGATGCCAGCTA 58.260 47.619 0.00 0.00 0.00 3.32
3140 6479 1.566211 ACTAGTGTGAGATGCCAGCT 58.434 50.000 0.00 0.00 0.00 4.24
3142 6481 4.991153 TTCTACTAGTGTGAGATGCCAG 57.009 45.455 5.39 0.00 0.00 4.85
3144 6483 4.563184 CGTTTTCTACTAGTGTGAGATGCC 59.437 45.833 5.39 0.00 0.00 4.40
3145 6484 4.563184 CCGTTTTCTACTAGTGTGAGATGC 59.437 45.833 5.39 0.00 0.00 3.91
3146 6485 5.103000 CCCGTTTTCTACTAGTGTGAGATG 58.897 45.833 5.39 2.95 0.00 2.90
3147 6486 4.159879 CCCCGTTTTCTACTAGTGTGAGAT 59.840 45.833 5.39 0.00 0.00 2.75
3149 6488 3.846360 CCCCGTTTTCTACTAGTGTGAG 58.154 50.000 5.39 0.00 0.00 3.51
3151 6490 2.289195 TGCCCCGTTTTCTACTAGTGTG 60.289 50.000 5.39 0.00 0.00 3.82
3152 6491 1.972795 TGCCCCGTTTTCTACTAGTGT 59.027 47.619 5.39 0.00 0.00 3.55
3153 6492 2.754946 TGCCCCGTTTTCTACTAGTG 57.245 50.000 5.39 0.00 0.00 2.74
3154 6493 3.558533 CCTTTGCCCCGTTTTCTACTAGT 60.559 47.826 0.00 0.00 0.00 2.57
3155 6494 3.007635 CCTTTGCCCCGTTTTCTACTAG 58.992 50.000 0.00 0.00 0.00 2.57
3156 6495 2.372837 ACCTTTGCCCCGTTTTCTACTA 59.627 45.455 0.00 0.00 0.00 1.82
3157 6496 1.144298 ACCTTTGCCCCGTTTTCTACT 59.856 47.619 0.00 0.00 0.00 2.57
3160 6499 0.106419 TGACCTTTGCCCCGTTTTCT 60.106 50.000 0.00 0.00 0.00 2.52
3161 6500 0.031585 GTGACCTTTGCCCCGTTTTC 59.968 55.000 0.00 0.00 0.00 2.29
3162 6501 0.684805 TGTGACCTTTGCCCCGTTTT 60.685 50.000 0.00 0.00 0.00 2.43
3163 6502 1.076632 TGTGACCTTTGCCCCGTTT 60.077 52.632 0.00 0.00 0.00 3.60
3164 6503 1.528309 CTGTGACCTTTGCCCCGTT 60.528 57.895 0.00 0.00 0.00 4.44
3165 6504 2.113139 CTGTGACCTTTGCCCCGT 59.887 61.111 0.00 0.00 0.00 5.28
3166 6505 2.672996 CCTGTGACCTTTGCCCCG 60.673 66.667 0.00 0.00 0.00 5.73
3167 6506 2.283173 CCCTGTGACCTTTGCCCC 60.283 66.667 0.00 0.00 0.00 5.80
3168 6507 2.991540 GCCCTGTGACCTTTGCCC 60.992 66.667 0.00 0.00 0.00 5.36
3169 6508 2.203480 TGCCCTGTGACCTTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
3170 6509 1.109323 AACTGCCCTGTGACCTTTGC 61.109 55.000 0.00 0.00 0.00 3.68
3171 6510 1.402787 AAACTGCCCTGTGACCTTTG 58.597 50.000 0.00 0.00 0.00 2.77
3174 6513 0.550914 TGAAAACTGCCCTGTGACCT 59.449 50.000 0.00 0.00 0.00 3.85
3175 6514 0.668535 GTGAAAACTGCCCTGTGACC 59.331 55.000 0.00 0.00 0.00 4.02
3176 6515 1.388547 TGTGAAAACTGCCCTGTGAC 58.611 50.000 0.00 0.00 0.00 3.67
3177 6516 2.363306 ATGTGAAAACTGCCCTGTGA 57.637 45.000 0.00 0.00 0.00 3.58
3178 6517 3.612479 GCTAATGTGAAAACTGCCCTGTG 60.612 47.826 0.00 0.00 0.00 3.66
3179 6518 2.558359 GCTAATGTGAAAACTGCCCTGT 59.442 45.455 0.00 0.00 0.00 4.00
3180 6519 2.094545 GGCTAATGTGAAAACTGCCCTG 60.095 50.000 0.00 0.00 33.45 4.45
3181 6520 2.171003 GGCTAATGTGAAAACTGCCCT 58.829 47.619 0.00 0.00 33.45 5.19
3182 6521 2.654749 GGCTAATGTGAAAACTGCCC 57.345 50.000 0.00 0.00 33.45 5.36
3183 6522 1.204704 GGGGCTAATGTGAAAACTGCC 59.795 52.381 0.00 0.00 38.28 4.85
3184 6523 1.135402 CGGGGCTAATGTGAAAACTGC 60.135 52.381 0.00 0.00 0.00 4.40
3186 6525 1.074889 ACCGGGGCTAATGTGAAAACT 59.925 47.619 6.32 0.00 0.00 2.66
3198 6561 4.003788 CGTGACTGAACCGGGGCT 62.004 66.667 6.32 0.00 0.00 5.19
3199 6562 3.524648 TTCGTGACTGAACCGGGGC 62.525 63.158 6.32 0.00 0.00 5.80
3201 6564 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
3205 6568 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
3206 6569 1.364901 GTCCCGGTTCGTGACTGAA 59.635 57.895 0.00 0.00 36.72 3.02
3208 6571 2.048503 GGTCCCGGTTCGTGACTG 60.049 66.667 0.00 0.00 34.89 3.51
3209 6572 3.308705 GGGTCCCGGTTCGTGACT 61.309 66.667 0.00 0.00 34.89 3.41
3210 6573 1.606885 TATGGGTCCCGGTTCGTGAC 61.607 60.000 2.65 0.00 33.83 3.67
3211 6574 1.305129 TATGGGTCCCGGTTCGTGA 60.305 57.895 2.65 0.00 0.00 4.35
3212 6575 1.143183 CTATGGGTCCCGGTTCGTG 59.857 63.158 2.65 0.00 0.00 4.35
3213 6576 2.062177 CCTATGGGTCCCGGTTCGT 61.062 63.158 2.65 0.00 0.00 3.85
3214 6577 2.803817 CCCTATGGGTCCCGGTTCG 61.804 68.421 2.65 0.00 38.25 3.95
3215 6578 3.237414 CCCTATGGGTCCCGGTTC 58.763 66.667 2.65 0.00 38.25 3.62
3225 6588 1.073199 GGGACGAATGCCCCTATGG 59.927 63.158 0.00 0.00 39.81 2.74
3226 6589 4.800554 GGGACGAATGCCCCTATG 57.199 61.111 0.00 0.00 39.81 2.23
3239 6602 4.754667 GGGCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
3242 6605 4.760047 CCTGGGCTCACGAACCGG 62.760 72.222 0.00 0.00 0.00 5.28
3244 6607 4.410400 CCCCTGGGCTCACGAACC 62.410 72.222 7.39 0.00 0.00 3.62
3245 6608 4.410400 CCCCCTGGGCTCACGAAC 62.410 72.222 7.39 0.00 35.35 3.95
3273 6636 2.438434 GGACCAATGCCCACGAGG 60.438 66.667 0.00 0.00 39.47 4.63
3274 6637 2.438434 GGGACCAATGCCCACGAG 60.438 66.667 0.00 0.00 45.31 4.18
3275 6638 4.402528 CGGGACCAATGCCCACGA 62.403 66.667 0.00 0.00 46.36 4.35
3277 6640 3.879180 AACCGGGACCAATGCCCAC 62.879 63.158 6.32 0.00 46.36 4.61
3278 6641 3.577334 GAACCGGGACCAATGCCCA 62.577 63.158 6.32 0.00 46.36 5.36
3279 6642 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
3280 6643 2.524951 TACGAACCGGGACCAATGCC 62.525 60.000 6.32 0.00 0.00 4.40
3281 6644 0.463116 ATACGAACCGGGACCAATGC 60.463 55.000 6.32 0.00 0.00 3.56
3282 6645 1.295792 CATACGAACCGGGACCAATG 58.704 55.000 6.32 0.00 0.00 2.82
3283 6646 0.179468 CCATACGAACCGGGACCAAT 59.821 55.000 6.32 0.00 0.00 3.16
3284 6647 0.903924 TCCATACGAACCGGGACCAA 60.904 55.000 6.32 0.00 0.00 3.67
3285 6648 0.903924 TTCCATACGAACCGGGACCA 60.904 55.000 6.32 0.00 0.00 4.02
3286 6649 0.460811 GTTCCATACGAACCGGGACC 60.461 60.000 6.32 0.00 44.46 4.46
3287 6650 3.055144 GTTCCATACGAACCGGGAC 57.945 57.895 6.32 0.00 44.46 4.46
3293 6656 3.128068 GGGACAAATGGTTCCATACGAAC 59.872 47.826 4.67 0.00 45.54 3.95
3294 6657 3.349022 GGGACAAATGGTTCCATACGAA 58.651 45.455 4.67 0.00 45.54 3.85
3295 6658 2.678479 CGGGACAAATGGTTCCATACGA 60.678 50.000 4.67 0.00 46.73 3.43
3297 6660 2.021457 CCGGGACAAATGGTTCCATAC 58.979 52.381 4.67 0.00 46.73 2.39
3298 6661 1.636519 ACCGGGACAAATGGTTCCATA 59.363 47.619 6.32 0.00 46.73 2.74
3300 6663 0.186386 AACCGGGACAAATGGTTCCA 59.814 50.000 6.32 0.00 46.73 3.53
3301 6664 3.045518 AACCGGGACAAATGGTTCC 57.954 52.632 6.32 0.00 42.11 3.62
3304 6667 0.321298 CTCGAACCGGGACAAATGGT 60.321 55.000 6.32 0.00 37.68 3.55
3305 6668 1.644786 GCTCGAACCGGGACAAATGG 61.645 60.000 6.32 0.00 0.00 3.16
3306 6669 1.644786 GGCTCGAACCGGGACAAATG 61.645 60.000 6.32 0.00 34.24 2.32
3307 6670 1.376812 GGCTCGAACCGGGACAAAT 60.377 57.895 6.32 0.00 34.24 2.32
3308 6671 2.031465 GGCTCGAACCGGGACAAA 59.969 61.111 6.32 0.00 34.24 2.83
3309 6672 3.235481 TGGCTCGAACCGGGACAA 61.235 61.111 6.32 0.00 44.95 3.18
3310 6673 3.998672 GTGGCTCGAACCGGGACA 61.999 66.667 6.32 0.00 46.14 4.02
3321 6684 1.880819 TTAGTCCCGGTTCGTGGCTC 61.881 60.000 0.00 0.00 0.00 4.70
3322 6685 1.262640 ATTAGTCCCGGTTCGTGGCT 61.263 55.000 0.00 0.00 0.00 4.75
3323 6686 1.087771 CATTAGTCCCGGTTCGTGGC 61.088 60.000 0.00 0.00 0.00 5.01
3324 6687 0.461339 CCATTAGTCCCGGTTCGTGG 60.461 60.000 0.00 0.00 0.00 4.94
3325 6688 0.248289 ACCATTAGTCCCGGTTCGTG 59.752 55.000 0.00 0.00 0.00 4.35
3326 6689 0.533951 GACCATTAGTCCCGGTTCGT 59.466 55.000 0.00 0.00 39.84 3.85
3327 6690 3.357504 GACCATTAGTCCCGGTTCG 57.642 57.895 0.00 0.00 39.84 3.95
3335 6698 1.067821 CAGGAGCGAGGACCATTAGTC 59.932 57.143 0.00 0.00 45.51 2.59
3338 6701 1.686325 GCCAGGAGCGAGGACCATTA 61.686 60.000 0.00 0.00 0.00 1.90
3339 6702 3.036429 GCCAGGAGCGAGGACCATT 62.036 63.158 0.00 0.00 0.00 3.16
3340 6703 3.474570 GCCAGGAGCGAGGACCAT 61.475 66.667 0.00 0.00 0.00 3.55
3346 6709 4.020617 TTGTGGGCCAGGAGCGAG 62.021 66.667 6.40 0.00 45.17 5.03
3347 6710 4.329545 GTTGTGGGCCAGGAGCGA 62.330 66.667 6.40 0.00 45.17 4.93
3349 6712 3.590466 ATGGTTGTGGGCCAGGAGC 62.590 63.158 6.40 9.05 39.65 4.70
3350 6713 0.542702 AAATGGTTGTGGGCCAGGAG 60.543 55.000 6.40 0.00 39.65 3.69
3351 6714 0.831288 CAAATGGTTGTGGGCCAGGA 60.831 55.000 6.40 0.00 39.65 3.86
3352 6715 1.120795 ACAAATGGTTGTGGGCCAGG 61.121 55.000 6.40 0.00 46.40 4.45
3353 6716 2.439837 ACAAATGGTTGTGGGCCAG 58.560 52.632 6.40 0.00 46.40 4.85
3364 6727 0.887933 CCAAGAACCGGGACAAATGG 59.112 55.000 6.32 2.36 0.00 3.16
3365 6728 0.243636 GCCAAGAACCGGGACAAATG 59.756 55.000 6.32 0.00 0.00 2.32
3366 6729 0.178975 TGCCAAGAACCGGGACAAAT 60.179 50.000 6.32 0.00 0.00 2.32
3367 6730 0.178975 ATGCCAAGAACCGGGACAAA 60.179 50.000 6.32 0.00 0.00 2.83
3368 6731 0.893270 CATGCCAAGAACCGGGACAA 60.893 55.000 6.32 0.00 0.00 3.18
3369 6732 1.303236 CATGCCAAGAACCGGGACA 60.303 57.895 6.32 0.00 0.00 4.02
3370 6733 0.608035 TTCATGCCAAGAACCGGGAC 60.608 55.000 6.32 0.00 0.00 4.46
3371 6734 0.608035 GTTCATGCCAAGAACCGGGA 60.608 55.000 6.32 0.00 39.48 5.14
3372 6735 1.883021 GTTCATGCCAAGAACCGGG 59.117 57.895 6.32 0.00 39.48 5.73
3376 6739 0.608035 TCCCGGTTCATGCCAAGAAC 60.608 55.000 4.27 4.27 43.49 3.01
3377 6740 0.608035 GTCCCGGTTCATGCCAAGAA 60.608 55.000 0.00 0.00 0.00 2.52
3378 6741 1.002624 GTCCCGGTTCATGCCAAGA 60.003 57.895 0.00 0.00 0.00 3.02
3379 6742 1.303236 TGTCCCGGTTCATGCCAAG 60.303 57.895 0.00 0.00 0.00 3.61
3383 6746 1.026718 CCTTCTGTCCCGGTTCATGC 61.027 60.000 0.00 0.00 0.00 4.06
3385 6748 1.299976 GCCTTCTGTCCCGGTTCAT 59.700 57.895 0.00 0.00 0.00 2.57
3386 6749 2.747686 GCCTTCTGTCCCGGTTCA 59.252 61.111 0.00 0.00 0.00 3.18
3387 6750 2.046217 GGCCTTCTGTCCCGGTTC 60.046 66.667 0.00 0.00 0.00 3.62
3392 6755 2.211468 AAATCCGGGCCTTCTGTCCC 62.211 60.000 0.84 0.00 39.17 4.46
3394 6757 1.209747 ACTAAATCCGGGCCTTCTGTC 59.790 52.381 0.84 0.00 0.00 3.51
3395 6758 1.286248 ACTAAATCCGGGCCTTCTGT 58.714 50.000 0.84 0.00 0.00 3.41
3396 6759 2.484947 GGTACTAAATCCGGGCCTTCTG 60.485 54.545 0.84 0.00 0.00 3.02
3397 6760 1.767088 GGTACTAAATCCGGGCCTTCT 59.233 52.381 0.84 0.00 0.00 2.85
3398 6761 1.539712 CGGTACTAAATCCGGGCCTTC 60.540 57.143 0.84 0.00 42.61 3.46
3399 6762 0.466963 CGGTACTAAATCCGGGCCTT 59.533 55.000 0.84 0.00 42.61 4.35
3400 6763 2.130512 CGGTACTAAATCCGGGCCT 58.869 57.895 0.84 0.00 42.61 5.19
3401 6764 4.764896 CGGTACTAAATCCGGGCC 57.235 61.111 0.00 0.00 42.61 5.80
3405 6768 2.542595 GCATGAACCGGTACTAAATCCG 59.457 50.000 8.00 0.00 45.42 4.18
3406 6769 2.876550 GGCATGAACCGGTACTAAATCC 59.123 50.000 8.00 0.00 0.00 3.01
3407 6770 3.311596 GTGGCATGAACCGGTACTAAATC 59.688 47.826 8.00 0.00 0.00 2.17
3411 6774 0.173935 CGTGGCATGAACCGGTACTA 59.826 55.000 8.00 0.00 0.00 1.82
3413 6776 0.671163 TTCGTGGCATGAACCGGTAC 60.671 55.000 17.86 0.00 0.00 3.34
3414 6777 0.671163 GTTCGTGGCATGAACCGGTA 60.671 55.000 32.65 6.85 37.98 4.02
3416 6779 2.867472 GTTCGTGGCATGAACCGG 59.133 61.111 32.65 0.00 37.98 5.28
3419 6782 2.686816 CCCGGTTCGTGGCATGAAC 61.687 63.158 34.08 34.08 42.00 3.18
3420 6783 2.359354 CCCGGTTCGTGGCATGAA 60.359 61.111 17.86 17.86 0.00 2.57
3421 6784 3.315140 TCCCGGTTCGTGGCATGA 61.315 61.111 5.03 5.03 0.00 3.07
3422 6785 3.124921 GTCCCGGTTCGTGGCATG 61.125 66.667 0.00 0.00 0.00 4.06
3423 6786 4.404098 GGTCCCGGTTCGTGGCAT 62.404 66.667 0.00 0.00 0.00 4.40
3425 6788 3.912745 ATTGGTCCCGGTTCGTGGC 62.913 63.158 0.00 0.00 0.00 5.01
3426 6789 2.038269 CATTGGTCCCGGTTCGTGG 61.038 63.158 0.00 0.00 0.00 4.94
3427 6790 1.004320 TCATTGGTCCCGGTTCGTG 60.004 57.895 0.00 0.00 0.00 4.35
3428 6791 1.295423 CTCATTGGTCCCGGTTCGT 59.705 57.895 0.00 0.00 0.00 3.85
3429 6792 1.449601 CCTCATTGGTCCCGGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
3439 6802 5.163195 GGGGTATATATAGGCACCTCATTGG 60.163 48.000 0.00 0.00 42.93 3.16
3440 6803 5.428457 TGGGGTATATATAGGCACCTCATTG 59.572 44.000 8.69 0.00 36.61 2.82
3441 6804 5.609782 TGGGGTATATATAGGCACCTCATT 58.390 41.667 8.69 0.00 36.61 2.57
3443 6806 4.703101 TGGGGTATATATAGGCACCTCA 57.297 45.455 8.69 8.69 39.24 3.86
3445 6808 4.223953 CGATGGGGTATATATAGGCACCT 58.776 47.826 8.52 0.00 0.00 4.00
3446 6809 3.244112 GCGATGGGGTATATATAGGCACC 60.244 52.174 0.00 0.00 0.00 5.01
3449 6812 2.969950 TGGCGATGGGGTATATATAGGC 59.030 50.000 0.00 0.00 0.00 3.93
3450 6813 3.005472 CGTGGCGATGGGGTATATATAGG 59.995 52.174 0.00 0.00 0.00 2.57
3451 6814 3.005472 CCGTGGCGATGGGGTATATATAG 59.995 52.174 0.00 0.00 0.00 1.31
3453 6816 1.760613 CCGTGGCGATGGGGTATATAT 59.239 52.381 0.00 0.00 0.00 0.86
3454 6817 1.187974 CCGTGGCGATGGGGTATATA 58.812 55.000 0.00 0.00 0.00 0.86
3455 6818 1.980052 CCGTGGCGATGGGGTATAT 59.020 57.895 0.00 0.00 0.00 0.86
3456 6819 2.874664 GCCGTGGCGATGGGGTATA 61.875 63.158 9.23 0.00 0.00 1.47
3457 6820 4.250305 GCCGTGGCGATGGGGTAT 62.250 66.667 9.23 0.00 0.00 2.73
3468 6869 4.007644 TGGAGTGCTCTGCCGTGG 62.008 66.667 4.77 0.00 0.00 4.94
3469 6870 2.740055 GTGGAGTGCTCTGCCGTG 60.740 66.667 4.77 0.00 0.00 4.94
3471 6872 2.433838 CTGTGGAGTGCTCTGCCG 60.434 66.667 4.77 0.00 0.00 5.69
3472 6873 1.670406 CACTGTGGAGTGCTCTGCC 60.670 63.158 4.77 1.67 43.24 4.85
3473 6874 3.963222 CACTGTGGAGTGCTCTGC 58.037 61.111 0.00 0.00 43.24 4.26
3487 6888 2.225467 GCCAGAGAAAAACAGAGCACT 58.775 47.619 0.00 0.00 0.00 4.40
3488 6889 1.268079 GGCCAGAGAAAAACAGAGCAC 59.732 52.381 0.00 0.00 0.00 4.40
3491 6892 1.160137 CCGGCCAGAGAAAAACAGAG 58.840 55.000 2.24 0.00 0.00 3.35
3492 6893 0.889186 GCCGGCCAGAGAAAAACAGA 60.889 55.000 18.11 0.00 0.00 3.41
3493 6894 1.581447 GCCGGCCAGAGAAAAACAG 59.419 57.895 18.11 0.00 0.00 3.16
3494 6895 2.258013 CGCCGGCCAGAGAAAAACA 61.258 57.895 23.46 0.00 0.00 2.83
3495 6896 1.912371 CTCGCCGGCCAGAGAAAAAC 61.912 60.000 23.46 0.00 36.65 2.43
3496 6897 1.671054 CTCGCCGGCCAGAGAAAAA 60.671 57.895 23.46 0.00 36.65 1.94
3497 6898 2.047274 CTCGCCGGCCAGAGAAAA 60.047 61.111 23.46 0.00 36.65 2.29
3498 6899 4.082523 CCTCGCCGGCCAGAGAAA 62.083 66.667 27.10 3.14 36.65 2.52
3510 6911 4.035102 ACAAAGCCCTCCCCTCGC 62.035 66.667 0.00 0.00 0.00 5.03
3512 6913 2.356667 CCACAAAGCCCTCCCCTC 59.643 66.667 0.00 0.00 0.00 4.30
3513 6914 2.452491 ACCACAAAGCCCTCCCCT 60.452 61.111 0.00 0.00 0.00 4.79
3514 6915 2.283173 CACCACAAAGCCCTCCCC 60.283 66.667 0.00 0.00 0.00 4.81
3516 6917 1.973812 GAGCACCACAAAGCCCTCC 60.974 63.158 0.00 0.00 0.00 4.30
3517 6918 0.324943 TAGAGCACCACAAAGCCCTC 59.675 55.000 0.00 0.00 0.00 4.30
3519 6920 1.308783 GCTAGAGCACCACAAAGCCC 61.309 60.000 0.00 0.00 41.59 5.19
3522 6923 2.072298 GTGAGCTAGAGCACCACAAAG 58.928 52.381 16.95 0.00 45.16 2.77
3523 6924 2.169832 GTGAGCTAGAGCACCACAAA 57.830 50.000 16.95 0.00 45.16 2.83
3524 6925 3.914984 GTGAGCTAGAGCACCACAA 57.085 52.632 16.95 0.00 45.16 3.33
3530 6931 2.591923 CATAGGAGGTGAGCTAGAGCA 58.408 52.381 4.01 0.00 45.16 4.26
3531 6932 1.272212 GCATAGGAGGTGAGCTAGAGC 59.728 57.143 0.00 0.00 42.49 4.09
3534 6935 2.034878 TGTGCATAGGAGGTGAGCTAG 58.965 52.381 0.00 0.00 0.00 3.42
3535 6936 2.159179 TGTGCATAGGAGGTGAGCTA 57.841 50.000 0.00 0.00 0.00 3.32
3536 6937 1.140452 CATGTGCATAGGAGGTGAGCT 59.860 52.381 0.00 0.00 0.00 4.09
3537 6938 1.139654 TCATGTGCATAGGAGGTGAGC 59.860 52.381 0.00 0.00 0.00 4.26
3539 6940 1.764723 CCTCATGTGCATAGGAGGTGA 59.235 52.381 29.58 9.38 41.58 4.02
3552 7109 3.127548 GCATTTCATCGAACACCTCATGT 59.872 43.478 0.00 0.00 46.42 3.21
3555 7112 2.083774 GGCATTTCATCGAACACCTCA 58.916 47.619 0.00 0.00 0.00 3.86
3556 7113 1.401905 GGGCATTTCATCGAACACCTC 59.598 52.381 0.00 0.00 0.00 3.85
3561 7118 0.028110 GCTCGGGCATTTCATCGAAC 59.972 55.000 0.00 0.00 38.54 3.95
3563 7120 1.523711 GGCTCGGGCATTTCATCGA 60.524 57.895 10.74 0.00 40.87 3.59
3564 7121 1.819208 TGGCTCGGGCATTTCATCG 60.819 57.895 10.74 0.00 40.87 3.84
3565 7122 1.031571 TGTGGCTCGGGCATTTCATC 61.032 55.000 10.74 0.00 40.92 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.