Multiple sequence alignment - TraesCS7D01G542800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G542800 chr7D 100.000 7038 0 0 1 7038 631756029 631763066 0.000000e+00 12997.0
1 TraesCS7D01G542800 chr7D 99.365 315 2 0 1 315 631747008 631747322 7.920000e-159 571.0
2 TraesCS7D01G542800 chr7D 89.759 166 17 0 3839 4004 631848131 631848296 5.530000e-51 213.0
3 TraesCS7D01G542800 chr7D 77.745 337 69 6 5981 6313 269135573 269135239 1.200000e-47 202.0
4 TraesCS7D01G542800 chr7D 78.696 230 48 1 6069 6297 486464806 486464577 1.220000e-32 152.0
5 TraesCS7D01G542800 chr7D 100.000 31 0 0 6983 7013 534338396 534338426 2.740000e-04 58.4
6 TraesCS7D01G542800 chr7A 94.860 5078 169 28 1281 6314 736573093 736568064 0.000000e+00 7847.0
7 TraesCS7D01G542800 chr7A 87.515 833 45 23 1 824 736574132 736573350 0.000000e+00 907.0
8 TraesCS7D01G542800 chr7A 88.667 300 15 7 880 1169 736573388 736573098 1.450000e-91 348.0
9 TraesCS7D01G542800 chr7A 82.449 245 35 4 534 770 13429024 13428780 2.570000e-49 207.0
10 TraesCS7D01G542800 chr7A 77.812 320 68 3 5981 6298 299237344 299237662 2.000000e-45 195.0
11 TraesCS7D01G542800 chr7A 82.653 98 14 3 1353 1449 138041334 138041239 4.520000e-12 84.2
12 TraesCS7D01G542800 chr3D 97.504 681 17 0 6305 6985 175367769 175367089 0.000000e+00 1164.0
13 TraesCS7D01G542800 chr3D 95.512 713 29 2 6275 6985 136276020 136276731 0.000000e+00 1136.0
14 TraesCS7D01G542800 chr6D 97.368 684 17 1 6303 6985 312166726 312167409 0.000000e+00 1162.0
15 TraesCS7D01G542800 chr6D 97.357 681 18 0 6305 6985 325375606 325374926 0.000000e+00 1158.0
16 TraesCS7D01G542800 chr6D 85.141 249 28 5 543 782 464536773 464536525 5.450000e-61 246.0
17 TraesCS7D01G542800 chr6D 83.884 242 30 5 543 776 144464965 144464725 9.190000e-54 222.0
18 TraesCS7D01G542800 chr6D 85.143 175 25 1 3830 4004 465205111 465205284 2.020000e-40 178.0
19 TraesCS7D01G542800 chr4D 97.500 680 17 0 6306 6985 40431046 40430367 0.000000e+00 1162.0
20 TraesCS7D01G542800 chr4D 97.353 680 18 0 6306 6985 88285600 88284921 0.000000e+00 1157.0
21 TraesCS7D01G542800 chr4D 97.353 680 18 0 6306 6985 439167503 439168182 0.000000e+00 1157.0
22 TraesCS7D01G542800 chr4D 79.692 325 59 6 5983 6305 190313845 190314164 1.970000e-55 228.0
23 TraesCS7D01G542800 chr4D 86.387 191 26 0 580 770 409425 409235 7.150000e-50 209.0
24 TraesCS7D01G542800 chr5D 97.493 678 17 0 6308 6985 356254882 356255559 0.000000e+00 1158.0
25 TraesCS7D01G542800 chr5D 79.699 266 34 12 1354 1608 50827410 50827666 2.610000e-39 174.0
26 TraesCS7D01G542800 chr1D 97.222 684 18 1 6302 6985 153830365 153829683 0.000000e+00 1157.0
27 TraesCS7D01G542800 chr1D 82.917 240 34 3 543 775 399066662 399066423 7.150000e-50 209.0
28 TraesCS7D01G542800 chr1D 94.915 59 2 1 6980 7038 96918321 96918378 2.700000e-14 91.6
29 TraesCS7D01G542800 chr2D 82.646 461 75 4 4702 5159 579758001 579757543 3.060000e-108 403.0
30 TraesCS7D01G542800 chr2D 82.573 241 35 4 537 770 118372119 118372359 9.250000e-49 206.0
31 TraesCS7D01G542800 chr2D 82.158 241 36 5 537 770 568236112 568236352 4.310000e-47 200.0
32 TraesCS7D01G542800 chr2B 82.468 462 77 2 4702 5159 697708370 697707909 1.100000e-107 401.0
33 TraesCS7D01G542800 chr2B 78.299 341 67 7 5978 6313 436433408 436433746 5.530000e-51 213.0
34 TraesCS7D01G542800 chr2B 82.178 101 14 3 1355 1454 100847795 100847892 4.520000e-12 84.2
35 TraesCS7D01G542800 chr2A 82.505 463 74 6 4702 5159 717385828 717385368 3.960000e-107 399.0
36 TraesCS7D01G542800 chr2A 83.077 65 9 2 1545 1608 557312902 557312839 2.740000e-04 58.4
37 TraesCS7D01G542800 chr5B 81.977 344 53 8 5976 6313 390411128 390410788 4.160000e-72 283.0
38 TraesCS7D01G542800 chr5B 81.686 344 54 8 5976 6313 390277149 390276809 1.930000e-70 278.0
39 TraesCS7D01G542800 chr5B 85.027 187 18 6 1353 1538 53738616 53738793 1.560000e-41 182.0
40 TraesCS7D01G542800 chr5B 85.075 67 10 0 1472 1538 618484403 618484469 1.270000e-07 69.4
41 TraesCS7D01G542800 chr4A 81.349 252 39 4 536 780 198911552 198911802 1.550000e-46 198.0
42 TraesCS7D01G542800 chr5A 79.848 263 33 14 1354 1603 623219622 623219877 2.610000e-39 174.0
43 TraesCS7D01G542800 chr7B 79.487 273 28 13 1 269 743282984 743283232 1.210000e-37 169.0
44 TraesCS7D01G542800 chr6A 76.821 302 66 3 6015 6313 409674646 409674346 4.370000e-37 167.0
45 TraesCS7D01G542800 chr6A 96.970 33 0 1 6981 7013 15642089 15642120 4.000000e-03 54.7
46 TraesCS7D01G542800 chr4B 81.707 164 17 12 1354 1517 634308600 634308450 2.670000e-24 124.0
47 TraesCS7D01G542800 chr4B 100.000 31 0 0 6983 7013 586318995 586318965 2.740000e-04 58.4
48 TraesCS7D01G542800 chr4B 100.000 29 0 0 6985 7013 444919061 444919089 4.000000e-03 54.7
49 TraesCS7D01G542800 chr4B 100.000 29 0 0 6985 7013 505725645 505725673 4.000000e-03 54.7
50 TraesCS7D01G542800 chr3B 96.610 59 2 0 6980 7038 629638505 629638447 1.620000e-16 99.0
51 TraesCS7D01G542800 chr3B 96.875 32 1 0 6982 7013 790969077 790969108 4.000000e-03 54.7
52 TraesCS7D01G542800 chrUn 100.000 49 0 0 6987 7035 284468386 284468338 2.700000e-14 91.6
53 TraesCS7D01G542800 chr3A 76.263 198 29 11 1349 1538 703306422 703306609 9.720000e-14 89.8
54 TraesCS7D01G542800 chr1B 76.970 165 29 8 1354 1517 231661990 231661834 1.260000e-12 86.1
55 TraesCS7D01G542800 chr6B 82.000 100 17 1 1352 1451 337666340 337666242 4.520000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G542800 chr7D 631756029 631763066 7037 False 12997 12997 100.000000 1 7038 1 chr7D.!!$F3 7037
1 TraesCS7D01G542800 chr7A 736568064 736574132 6068 True 3034 7847 90.347333 1 6314 3 chr7A.!!$R3 6313
2 TraesCS7D01G542800 chr3D 175367089 175367769 680 True 1164 1164 97.504000 6305 6985 1 chr3D.!!$R1 680
3 TraesCS7D01G542800 chr3D 136276020 136276731 711 False 1136 1136 95.512000 6275 6985 1 chr3D.!!$F1 710
4 TraesCS7D01G542800 chr6D 312166726 312167409 683 False 1162 1162 97.368000 6303 6985 1 chr6D.!!$F1 682
5 TraesCS7D01G542800 chr6D 325374926 325375606 680 True 1158 1158 97.357000 6305 6985 1 chr6D.!!$R2 680
6 TraesCS7D01G542800 chr4D 40430367 40431046 679 True 1162 1162 97.500000 6306 6985 1 chr4D.!!$R2 679
7 TraesCS7D01G542800 chr4D 88284921 88285600 679 True 1157 1157 97.353000 6306 6985 1 chr4D.!!$R3 679
8 TraesCS7D01G542800 chr4D 439167503 439168182 679 False 1157 1157 97.353000 6306 6985 1 chr4D.!!$F2 679
9 TraesCS7D01G542800 chr5D 356254882 356255559 677 False 1158 1158 97.493000 6308 6985 1 chr5D.!!$F2 677
10 TraesCS7D01G542800 chr1D 153829683 153830365 682 True 1157 1157 97.222000 6302 6985 1 chr1D.!!$R1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 590 0.168128 GCCCACGTTTCCGATCTTTG 59.832 55.0 0.00 0.0 37.88 2.77 F
1758 1815 0.038892 CTGCCATCACAGCAACCAAC 60.039 55.0 0.00 0.0 40.35 3.77 F
2270 2327 0.249238 CAGGAGCTGTCTACGATGGC 60.249 60.0 0.00 0.0 0.00 4.40 F
2582 2639 0.037590 ACACAATGCATGGGTACGGT 59.962 50.0 5.94 0.0 46.31 4.83 F
3032 3089 0.655733 ACAACGGCAACTCAGAAACG 59.344 50.0 0.00 0.0 0.00 3.60 F
3948 4005 1.373570 CCGGAAAGAGTGGAAGCATC 58.626 55.0 0.00 0.0 0.00 3.91 F
5124 5195 1.985473 TGCCATGAAAGTCTTGTGCT 58.015 45.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2560 2617 0.098728 GTACCCATGCATTGTGTCGC 59.901 55.000 0.00 0.0 0.00 5.19 R
2582 2639 0.032403 CGTCCTCCCACGTGTACAAA 59.968 55.000 15.65 0.0 34.95 2.83 R
3888 3945 1.202222 GCATCACTTCCGCAAATGGAG 60.202 52.381 0.00 0.0 39.72 3.86 R
4340 4397 0.323629 CGCTGGAAGGTTTCACCCTA 59.676 55.000 0.00 0.0 39.75 3.53 R
4888 4959 0.700564 AGCAAAGCATCCCTCCAAGA 59.299 50.000 0.00 0.0 0.00 3.02 R
5459 5530 1.180029 ATGAATGACCTTGCTGTGCC 58.820 50.000 0.00 0.0 0.00 5.01 R
7006 7079 0.028505 CACACTATGAATGCCGCAGC 59.971 55.000 0.00 0.0 40.48 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.985059 CACATCCATCATGCTATATCCTAGTG 59.015 42.308 0.00 0.00 35.65 2.74
71 72 2.106683 ATGCGACTTTGGCGGCTAC 61.107 57.895 11.43 0.00 0.00 3.58
72 73 3.497031 GCGACTTTGGCGGCTACC 61.497 66.667 11.43 0.00 0.00 3.18
73 74 2.818274 CGACTTTGGCGGCTACCC 60.818 66.667 11.43 0.00 0.00 3.69
138 139 9.667107 AGACATTACTTTTCTTCGATCCAATAA 57.333 29.630 0.00 0.00 0.00 1.40
143 144 6.612306 ACTTTTCTTCGATCCAATAACAAGC 58.388 36.000 0.00 0.00 0.00 4.01
144 145 5.560966 TTTCTTCGATCCAATAACAAGCC 57.439 39.130 0.00 0.00 0.00 4.35
145 146 4.487714 TCTTCGATCCAATAACAAGCCT 57.512 40.909 0.00 0.00 0.00 4.58
147 148 5.601662 TCTTCGATCCAATAACAAGCCTAG 58.398 41.667 0.00 0.00 0.00 3.02
163 164 4.459390 GCCTAGGCTAGCTTAGATAACC 57.541 50.000 29.83 12.12 38.26 2.85
164 165 4.090819 GCCTAGGCTAGCTTAGATAACCT 58.909 47.826 29.83 11.70 38.26 3.50
165 166 4.081917 GCCTAGGCTAGCTTAGATAACCTG 60.082 50.000 29.83 15.14 38.26 4.00
166 167 5.326069 CCTAGGCTAGCTTAGATAACCTGA 58.674 45.833 29.83 0.00 0.00 3.86
167 168 5.184287 CCTAGGCTAGCTTAGATAACCTGAC 59.816 48.000 29.83 2.83 0.00 3.51
168 169 3.570550 AGGCTAGCTTAGATAACCTGACG 59.429 47.826 15.72 0.00 0.00 4.35
169 170 3.318557 GGCTAGCTTAGATAACCTGACGT 59.681 47.826 15.72 0.00 0.00 4.34
170 171 4.518211 GGCTAGCTTAGATAACCTGACGTA 59.482 45.833 15.72 0.00 0.00 3.57
244 245 1.306296 GCCCTGGGCCTTTGTATCA 59.694 57.895 27.77 0.00 44.06 2.15
246 247 1.767759 CCCTGGGCCTTTGTATCAAG 58.232 55.000 4.53 0.00 0.00 3.02
306 311 6.385649 ACAAATCGGTTTACAAATCACAGT 57.614 33.333 0.00 0.00 0.00 3.55
479 487 1.686110 GGCCGGGAGAGGAAAGAGA 60.686 63.158 2.18 0.00 0.00 3.10
508 516 1.425428 GCATGTTGCGTGTCTAGGC 59.575 57.895 0.00 0.00 38.16 3.93
509 517 1.298157 GCATGTTGCGTGTCTAGGCA 61.298 55.000 0.00 0.00 45.09 4.75
511 519 1.328680 CATGTTGCGTGTCTAGGCATC 59.671 52.381 0.00 0.00 45.92 3.91
513 521 1.002366 GTTGCGTGTCTAGGCATCTG 58.998 55.000 0.00 0.00 45.92 2.90
514 522 0.740868 TTGCGTGTCTAGGCATCTGC 60.741 55.000 0.00 6.26 45.92 4.26
515 523 2.233654 GCGTGTCTAGGCATCTGCG 61.234 63.158 0.00 0.00 43.26 5.18
516 524 1.433471 CGTGTCTAGGCATCTGCGA 59.567 57.895 0.00 0.00 43.26 5.10
517 525 0.593518 CGTGTCTAGGCATCTGCGAG 60.594 60.000 0.00 0.00 43.26 5.03
518 526 0.873743 GTGTCTAGGCATCTGCGAGC 60.874 60.000 0.00 0.00 43.26 5.03
519 527 1.039785 TGTCTAGGCATCTGCGAGCT 61.040 55.000 0.00 0.00 43.26 4.09
520 528 0.597118 GTCTAGGCATCTGCGAGCTG 60.597 60.000 0.00 0.00 43.26 4.24
521 529 1.955157 CTAGGCATCTGCGAGCTGC 60.955 63.158 0.00 0.00 46.70 5.25
522 530 2.366480 CTAGGCATCTGCGAGCTGCT 62.366 60.000 0.00 0.00 46.63 4.24
523 531 1.964608 TAGGCATCTGCGAGCTGCTT 61.965 55.000 2.53 6.81 46.63 3.91
524 532 2.404995 GGCATCTGCGAGCTGCTTT 61.405 57.895 2.53 0.00 46.63 3.51
525 533 1.226323 GCATCTGCGAGCTGCTTTG 60.226 57.895 2.53 0.51 46.63 2.77
546 554 8.704234 GCTTTGTATTCAATAGTATTCTCTCCG 58.296 37.037 0.00 0.00 33.32 4.63
554 562 6.153851 TCAATAGTATTCTCTCCGTTCCACAA 59.846 38.462 0.00 0.00 0.00 3.33
556 564 4.759782 AGTATTCTCTCCGTTCCACAATG 58.240 43.478 0.00 0.00 0.00 2.82
557 565 3.703001 ATTCTCTCCGTTCCACAATGT 57.297 42.857 0.00 0.00 0.00 2.71
558 566 4.819105 ATTCTCTCCGTTCCACAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
559 567 3.868757 TCTCTCCGTTCCACAATGTAG 57.131 47.619 0.00 0.00 0.00 2.74
560 568 3.162666 TCTCTCCGTTCCACAATGTAGT 58.837 45.455 0.00 0.00 0.00 2.73
561 569 4.338012 TCTCTCCGTTCCACAATGTAGTA 58.662 43.478 0.00 0.00 0.00 1.82
562 570 4.157289 TCTCTCCGTTCCACAATGTAGTAC 59.843 45.833 0.00 0.00 0.00 2.73
563 571 3.119743 TCTCCGTTCCACAATGTAGTACG 60.120 47.826 4.30 4.30 0.00 3.67
564 572 1.657094 CCGTTCCACAATGTAGTACGC 59.343 52.381 5.59 0.00 0.00 4.42
565 573 1.657094 CGTTCCACAATGTAGTACGCC 59.343 52.381 0.00 0.00 0.00 5.68
566 574 2.004733 GTTCCACAATGTAGTACGCCC 58.995 52.381 0.00 0.00 0.00 6.13
567 575 1.268066 TCCACAATGTAGTACGCCCA 58.732 50.000 0.00 0.00 0.00 5.36
568 576 1.066716 TCCACAATGTAGTACGCCCAC 60.067 52.381 0.00 0.00 0.00 4.61
582 590 0.168128 GCCCACGTTTCCGATCTTTG 59.832 55.000 0.00 0.00 37.88 2.77
584 592 1.463444 CCCACGTTTCCGATCTTTGAC 59.537 52.381 0.00 0.00 37.88 3.18
586 594 2.139917 CACGTTTCCGATCTTTGACCA 58.860 47.619 0.00 0.00 37.88 4.02
595 603 9.503427 GTTTCCGATCTTTGACCATAAATTTAG 57.497 33.333 3.94 0.00 0.00 1.85
605 613 5.353123 TGACCATAAATTTAGCCAACGAGAC 59.647 40.000 3.94 0.00 0.00 3.36
609 617 6.260936 CCATAAATTTAGCCAACGAGACTGAT 59.739 38.462 3.94 0.00 0.00 2.90
617 625 0.317160 AACGAGACTGATTGTGGCGA 59.683 50.000 0.00 0.00 0.00 5.54
618 626 0.317160 ACGAGACTGATTGTGGCGAA 59.683 50.000 0.00 0.00 0.00 4.70
669 677 5.156355 TCGAAAGTACGAATTCAGTGGTAC 58.844 41.667 6.22 9.35 39.34 3.34
680 688 6.088085 CGAATTCAGTGGTACAATTTTTGCTC 59.912 38.462 6.22 0.00 44.16 4.26
710 718 5.569059 GCAATCGGTCTTGTTGATTAAACTG 59.431 40.000 0.00 0.00 39.70 3.16
716 724 6.534934 GGTCTTGTTGATTAAACTGACGATC 58.465 40.000 0.00 0.00 40.52 3.69
732 740 3.262420 ACGATCAAACTTGAATCTCGGG 58.738 45.455 14.84 0.00 39.93 5.14
740 748 0.391130 TTGAATCTCGGGAAGCGTGG 60.391 55.000 0.00 0.00 0.00 4.94
761 769 2.226437 GGCGCACTATATTGTGGAATGG 59.774 50.000 17.22 0.00 38.31 3.16
802 810 1.336755 GTCGGAAATGTGTGCCAAGTT 59.663 47.619 0.00 0.00 0.00 2.66
803 811 1.336440 TCGGAAATGTGTGCCAAGTTG 59.664 47.619 0.00 0.00 0.00 3.16
804 812 1.501169 GGAAATGTGTGCCAAGTTGC 58.499 50.000 0.00 0.00 0.00 4.17
805 813 1.069049 GGAAATGTGTGCCAAGTTGCT 59.931 47.619 0.00 0.00 0.00 3.91
806 814 2.483538 GGAAATGTGTGCCAAGTTGCTT 60.484 45.455 0.00 0.00 0.00 3.91
807 815 2.514205 AATGTGTGCCAAGTTGCTTC 57.486 45.000 0.00 0.00 0.00 3.86
808 816 1.696063 ATGTGTGCCAAGTTGCTTCT 58.304 45.000 0.00 0.00 0.00 2.85
809 817 1.473258 TGTGTGCCAAGTTGCTTCTT 58.527 45.000 0.00 0.00 0.00 2.52
810 818 1.405105 TGTGTGCCAAGTTGCTTCTTC 59.595 47.619 0.00 0.00 0.00 2.87
811 819 0.662619 TGTGCCAAGTTGCTTCTTCG 59.337 50.000 0.00 0.00 0.00 3.79
812 820 0.663153 GTGCCAAGTTGCTTCTTCGT 59.337 50.000 0.00 0.00 0.00 3.85
813 821 1.065551 GTGCCAAGTTGCTTCTTCGTT 59.934 47.619 0.00 0.00 0.00 3.85
814 822 1.748493 TGCCAAGTTGCTTCTTCGTTT 59.252 42.857 0.00 0.00 0.00 3.60
815 823 2.119457 GCCAAGTTGCTTCTTCGTTTG 58.881 47.619 0.00 0.00 0.00 2.93
816 824 2.731217 CCAAGTTGCTTCTTCGTTTGG 58.269 47.619 0.00 0.00 0.00 3.28
817 825 2.119457 CAAGTTGCTTCTTCGTTTGGC 58.881 47.619 0.00 0.00 0.00 4.52
818 826 1.680338 AGTTGCTTCTTCGTTTGGCT 58.320 45.000 0.00 0.00 0.00 4.75
819 827 1.604278 AGTTGCTTCTTCGTTTGGCTC 59.396 47.619 0.00 0.00 0.00 4.70
820 828 1.604278 GTTGCTTCTTCGTTTGGCTCT 59.396 47.619 0.00 0.00 0.00 4.09
821 829 2.806244 GTTGCTTCTTCGTTTGGCTCTA 59.194 45.455 0.00 0.00 0.00 2.43
822 830 2.413837 TGCTTCTTCGTTTGGCTCTAC 58.586 47.619 0.00 0.00 0.00 2.59
823 831 2.037251 TGCTTCTTCGTTTGGCTCTACT 59.963 45.455 0.00 0.00 0.00 2.57
824 832 3.257375 TGCTTCTTCGTTTGGCTCTACTA 59.743 43.478 0.00 0.00 0.00 1.82
825 833 4.081642 TGCTTCTTCGTTTGGCTCTACTAT 60.082 41.667 0.00 0.00 0.00 2.12
826 834 5.126545 TGCTTCTTCGTTTGGCTCTACTATA 59.873 40.000 0.00 0.00 0.00 1.31
827 835 6.183360 TGCTTCTTCGTTTGGCTCTACTATAT 60.183 38.462 0.00 0.00 0.00 0.86
828 836 6.702282 GCTTCTTCGTTTGGCTCTACTATATT 59.298 38.462 0.00 0.00 0.00 1.28
829 837 7.306866 GCTTCTTCGTTTGGCTCTACTATATTG 60.307 40.741 0.00 0.00 0.00 1.90
830 838 6.513180 TCTTCGTTTGGCTCTACTATATTGG 58.487 40.000 0.00 0.00 0.00 3.16
831 839 4.628074 TCGTTTGGCTCTACTATATTGGC 58.372 43.478 0.00 0.00 0.00 4.52
832 840 4.100344 TCGTTTGGCTCTACTATATTGGCA 59.900 41.667 0.00 0.00 0.00 4.92
833 841 4.449068 CGTTTGGCTCTACTATATTGGCAG 59.551 45.833 0.00 0.00 34.81 4.85
834 842 5.368989 GTTTGGCTCTACTATATTGGCAGT 58.631 41.667 0.00 0.00 34.81 4.40
835 843 5.630415 TTGGCTCTACTATATTGGCAGTT 57.370 39.130 0.00 0.00 34.81 3.16
836 844 5.215252 TGGCTCTACTATATTGGCAGTTC 57.785 43.478 0.00 0.00 0.00 3.01
837 845 4.653801 TGGCTCTACTATATTGGCAGTTCA 59.346 41.667 0.00 0.00 0.00 3.18
838 846 4.991687 GGCTCTACTATATTGGCAGTTCAC 59.008 45.833 0.00 0.00 0.00 3.18
839 847 4.991687 GCTCTACTATATTGGCAGTTCACC 59.008 45.833 0.00 0.00 0.00 4.02
840 848 5.221541 GCTCTACTATATTGGCAGTTCACCT 60.222 44.000 0.00 0.00 0.00 4.00
841 849 6.406692 TCTACTATATTGGCAGTTCACCTC 57.593 41.667 0.00 0.00 0.00 3.85
842 850 4.423625 ACTATATTGGCAGTTCACCTCC 57.576 45.455 0.00 0.00 0.00 4.30
843 851 2.332063 ATATTGGCAGTTCACCTCCG 57.668 50.000 0.00 0.00 0.00 4.63
844 852 0.981183 TATTGGCAGTTCACCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
845 853 0.606401 ATTGGCAGTTCACCTCCGTG 60.606 55.000 0.00 0.00 41.72 4.94
856 864 4.713824 TCACCTCCGTGAGTACATTTAG 57.286 45.455 0.00 0.00 44.20 1.85
857 865 4.084287 TCACCTCCGTGAGTACATTTAGT 58.916 43.478 0.00 0.00 44.20 2.24
858 866 5.255687 TCACCTCCGTGAGTACATTTAGTA 58.744 41.667 0.00 0.00 44.20 1.82
859 867 5.889853 TCACCTCCGTGAGTACATTTAGTAT 59.110 40.000 0.00 0.00 44.20 2.12
860 868 7.056006 TCACCTCCGTGAGTACATTTAGTATA 58.944 38.462 0.00 0.00 44.20 1.47
861 869 7.228108 TCACCTCCGTGAGTACATTTAGTATAG 59.772 40.741 0.00 0.00 44.20 1.31
862 870 7.013083 CACCTCCGTGAGTACATTTAGTATAGT 59.987 40.741 0.00 0.00 43.14 2.12
863 871 8.213679 ACCTCCGTGAGTACATTTAGTATAGTA 58.786 37.037 0.00 0.00 34.67 1.82
864 872 8.719648 CCTCCGTGAGTACATTTAGTATAGTAG 58.280 40.741 0.00 0.00 34.67 2.57
865 873 8.092521 TCCGTGAGTACATTTAGTATAGTAGC 57.907 38.462 0.00 0.00 34.67 3.58
866 874 7.935755 TCCGTGAGTACATTTAGTATAGTAGCT 59.064 37.037 0.00 0.00 34.67 3.32
867 875 9.212641 CCGTGAGTACATTTAGTATAGTAGCTA 57.787 37.037 0.00 0.00 34.67 3.32
1007 1015 3.494332 AGCAGCATTCCTCTTCTTGTTT 58.506 40.909 0.00 0.00 0.00 2.83
1017 1025 6.194796 TCCTCTTCTTGTTTGTTTCACTTG 57.805 37.500 0.00 0.00 0.00 3.16
1055 1063 4.547367 CCGGCGTCCATCCCTTCC 62.547 72.222 6.01 0.00 0.00 3.46
1075 1083 4.838486 CCTCTCGTCGCCTCGCAC 62.838 72.222 0.00 0.00 0.00 5.34
1099 1117 2.025887 CACAGGTAAGCATCCCTTCCTT 60.026 50.000 0.00 0.00 34.95 3.36
1104 1122 0.922626 AAGCATCCCTTCCTTCCTCC 59.077 55.000 0.00 0.00 0.00 4.30
1110 1128 0.341609 CCCTTCCTTCCTCCCTCTCT 59.658 60.000 0.00 0.00 0.00 3.10
1111 1129 1.691163 CCCTTCCTTCCTCCCTCTCTC 60.691 61.905 0.00 0.00 0.00 3.20
1154 1172 3.522731 CCACTCCTCTCGCCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
1179 1197 2.123683 CCTCTCCGGCCAGCTCTA 60.124 66.667 2.24 0.00 0.00 2.43
1180 1198 1.758514 CCTCTCCGGCCAGCTCTAA 60.759 63.158 2.24 0.00 0.00 2.10
1181 1199 1.739049 CTCTCCGGCCAGCTCTAAG 59.261 63.158 2.24 0.00 0.00 2.18
1182 1200 2.107953 CTCCGGCCAGCTCTAAGC 59.892 66.667 2.24 0.00 42.84 3.09
1183 1201 2.683572 TCCGGCCAGCTCTAAGCA 60.684 61.111 2.24 0.00 45.56 3.91
1184 1202 2.202987 CCGGCCAGCTCTAAGCAG 60.203 66.667 2.24 0.00 45.56 4.24
1185 1203 2.894387 CGGCCAGCTCTAAGCAGC 60.894 66.667 2.24 3.80 45.56 5.25
1186 1204 2.270205 GGCCAGCTCTAAGCAGCA 59.730 61.111 0.00 0.00 45.56 4.41
1187 1205 1.377725 GGCCAGCTCTAAGCAGCAA 60.378 57.895 0.00 0.00 45.56 3.91
1188 1206 1.652167 GGCCAGCTCTAAGCAGCAAC 61.652 60.000 0.00 0.00 45.56 4.17
1189 1207 1.975363 GCCAGCTCTAAGCAGCAACG 61.975 60.000 1.29 0.00 45.56 4.10
1190 1208 1.364626 CCAGCTCTAAGCAGCAACGG 61.365 60.000 1.29 0.00 45.56 4.44
1191 1209 1.078848 AGCTCTAAGCAGCAACGGG 60.079 57.895 1.29 0.00 45.56 5.28
1192 1210 2.754995 GCTCTAAGCAGCAACGGGC 61.755 63.158 0.00 0.00 41.89 6.13
1202 1220 3.727258 CAACGGGCATGGAGGGGA 61.727 66.667 0.00 0.00 0.00 4.81
1203 1221 2.938798 AACGGGCATGGAGGGGAA 60.939 61.111 0.00 0.00 0.00 3.97
1204 1222 2.316586 AACGGGCATGGAGGGGAAT 61.317 57.895 0.00 0.00 0.00 3.01
1205 1223 1.874299 AACGGGCATGGAGGGGAATT 61.874 55.000 0.00 0.00 0.00 2.17
1206 1224 1.529244 CGGGCATGGAGGGGAATTC 60.529 63.158 0.00 0.00 0.00 2.17
1207 1225 1.620259 GGGCATGGAGGGGAATTCA 59.380 57.895 7.93 0.00 0.00 2.57
1208 1226 0.189327 GGGCATGGAGGGGAATTCAT 59.811 55.000 7.93 0.00 0.00 2.57
1209 1227 1.413517 GGGCATGGAGGGGAATTCATT 60.414 52.381 7.93 0.00 0.00 2.57
1210 1228 2.158325 GGGCATGGAGGGGAATTCATTA 60.158 50.000 7.93 0.00 0.00 1.90
1211 1229 3.502857 GGGCATGGAGGGGAATTCATTAT 60.503 47.826 7.93 0.00 0.00 1.28
1212 1230 4.162651 GGCATGGAGGGGAATTCATTATT 58.837 43.478 7.93 0.00 0.00 1.40
1213 1231 4.221482 GGCATGGAGGGGAATTCATTATTC 59.779 45.833 7.93 0.00 41.64 1.75
1214 1232 4.834496 GCATGGAGGGGAATTCATTATTCA 59.166 41.667 7.93 0.00 43.72 2.57
1215 1233 5.482878 GCATGGAGGGGAATTCATTATTCAT 59.517 40.000 7.93 1.29 43.72 2.57
1216 1234 6.573680 GCATGGAGGGGAATTCATTATTCATG 60.574 42.308 7.93 13.19 43.72 3.07
1217 1235 5.396485 TGGAGGGGAATTCATTATTCATGG 58.604 41.667 7.93 0.00 43.72 3.66
1218 1236 5.135876 TGGAGGGGAATTCATTATTCATGGA 59.864 40.000 7.93 0.00 43.72 3.41
1219 1237 5.713861 GGAGGGGAATTCATTATTCATGGAG 59.286 44.000 7.93 0.00 43.72 3.86
1220 1238 5.648247 AGGGGAATTCATTATTCATGGAGG 58.352 41.667 7.93 0.00 43.72 4.30
1221 1239 4.774200 GGGGAATTCATTATTCATGGAGGG 59.226 45.833 7.93 0.00 43.72 4.30
1222 1240 4.221482 GGGAATTCATTATTCATGGAGGGC 59.779 45.833 7.93 0.00 43.72 5.19
1223 1241 4.834496 GGAATTCATTATTCATGGAGGGCA 59.166 41.667 7.93 0.00 43.72 5.36
1224 1242 5.305128 GGAATTCATTATTCATGGAGGGCAA 59.695 40.000 7.93 0.00 43.72 4.52
1225 1243 6.183360 GGAATTCATTATTCATGGAGGGCAAA 60.183 38.462 7.93 0.00 43.72 3.68
1226 1244 5.857471 TTCATTATTCATGGAGGGCAAAG 57.143 39.130 0.00 0.00 33.07 2.77
1227 1245 3.638160 TCATTATTCATGGAGGGCAAAGC 59.362 43.478 0.00 0.00 33.07 3.51
1228 1246 3.386932 TTATTCATGGAGGGCAAAGCT 57.613 42.857 0.00 0.00 0.00 3.74
1229 1247 4.518278 TTATTCATGGAGGGCAAAGCTA 57.482 40.909 0.00 0.00 0.00 3.32
1230 1248 2.425143 TTCATGGAGGGCAAAGCTAG 57.575 50.000 0.00 0.00 0.00 3.42
1231 1249 0.107017 TCATGGAGGGCAAAGCTAGC 60.107 55.000 6.62 6.62 0.00 3.42
1232 1250 0.106819 CATGGAGGGCAAAGCTAGCT 60.107 55.000 12.68 12.68 0.00 3.32
1233 1251 0.106819 ATGGAGGGCAAAGCTAGCTG 60.107 55.000 20.16 8.98 0.00 4.24
1234 1252 1.452833 GGAGGGCAAAGCTAGCTGG 60.453 63.158 20.16 14.98 0.00 4.85
1235 1253 1.604378 GAGGGCAAAGCTAGCTGGA 59.396 57.895 20.16 0.00 0.00 3.86
1236 1254 0.182299 GAGGGCAAAGCTAGCTGGAT 59.818 55.000 20.16 4.95 0.00 3.41
1237 1255 1.417890 GAGGGCAAAGCTAGCTGGATA 59.582 52.381 20.16 0.00 0.00 2.59
1238 1256 1.846439 AGGGCAAAGCTAGCTGGATAA 59.154 47.619 20.16 0.00 0.00 1.75
1239 1257 2.158696 AGGGCAAAGCTAGCTGGATAAG 60.159 50.000 20.16 6.02 0.00 1.73
1255 1273 6.214191 TGGATAAGCTGCTATACTAGATGC 57.786 41.667 0.90 0.00 0.00 3.91
1256 1274 5.954752 TGGATAAGCTGCTATACTAGATGCT 59.045 40.000 0.90 0.00 37.44 3.79
1257 1275 6.438741 TGGATAAGCTGCTATACTAGATGCTT 59.561 38.462 0.90 14.06 43.20 3.91
1258 1276 7.038729 TGGATAAGCTGCTATACTAGATGCTTT 60.039 37.037 0.90 7.23 41.95 3.51
1259 1277 7.491048 GGATAAGCTGCTATACTAGATGCTTTC 59.509 40.741 0.90 12.23 41.95 2.62
1260 1278 6.418057 AAGCTGCTATACTAGATGCTTTCT 57.582 37.500 0.90 0.00 40.37 2.52
1261 1279 6.024552 AGCTGCTATACTAGATGCTTTCTC 57.975 41.667 0.00 0.00 35.79 2.87
1262 1280 5.774690 AGCTGCTATACTAGATGCTTTCTCT 59.225 40.000 0.00 0.00 35.79 3.10
1263 1281 6.267471 AGCTGCTATACTAGATGCTTTCTCTT 59.733 38.462 0.00 0.00 35.79 2.85
1264 1282 6.586082 GCTGCTATACTAGATGCTTTCTCTTC 59.414 42.308 0.00 0.00 35.79 2.87
1265 1283 7.588497 TGCTATACTAGATGCTTTCTCTTCA 57.412 36.000 0.00 0.00 35.79 3.02
1266 1284 7.429633 TGCTATACTAGATGCTTTCTCTTCAC 58.570 38.462 0.00 0.00 35.79 3.18
1267 1285 7.286546 TGCTATACTAGATGCTTTCTCTTCACT 59.713 37.037 0.00 0.00 35.79 3.41
1268 1286 7.594758 GCTATACTAGATGCTTTCTCTTCACTG 59.405 40.741 0.00 0.00 35.79 3.66
1269 1287 4.502962 ACTAGATGCTTTCTCTTCACTGC 58.497 43.478 0.00 0.00 35.79 4.40
1270 1288 3.413846 AGATGCTTTCTCTTCACTGCA 57.586 42.857 0.00 0.00 34.88 4.41
1271 1289 3.952931 AGATGCTTTCTCTTCACTGCAT 58.047 40.909 0.00 0.00 42.74 3.96
1272 1290 4.333690 AGATGCTTTCTCTTCACTGCATT 58.666 39.130 0.00 0.00 40.58 3.56
1273 1291 4.765856 AGATGCTTTCTCTTCACTGCATTT 59.234 37.500 0.00 0.00 40.58 2.32
1274 1292 4.233123 TGCTTTCTCTTCACTGCATTTG 57.767 40.909 0.00 0.00 0.00 2.32
1275 1293 2.985139 GCTTTCTCTTCACTGCATTTGC 59.015 45.455 0.00 0.00 42.50 3.68
1309 1327 3.191581 CGGCAGTTTCTCTCTCTAGTTCA 59.808 47.826 0.00 0.00 0.00 3.18
1314 1332 4.947388 AGTTTCTCTCTCTAGTTCATCGCT 59.053 41.667 0.00 0.00 0.00 4.93
1357 1379 5.828859 TCAGATTTCCAGCCTACTAGTACTC 59.171 44.000 0.00 0.00 0.00 2.59
1367 1389 4.687219 GCCTACTAGTACTCCCTCCGTTTA 60.687 50.000 0.00 0.00 0.00 2.01
1543 1566 8.970859 AGATTTTGAGTGTTGATATTCCCTAG 57.029 34.615 0.00 0.00 0.00 3.02
1544 1567 8.552296 AGATTTTGAGTGTTGATATTCCCTAGT 58.448 33.333 0.00 0.00 0.00 2.57
1545 1568 8.738645 ATTTTGAGTGTTGATATTCCCTAGTC 57.261 34.615 0.00 0.00 0.00 2.59
1546 1569 6.867519 TTGAGTGTTGATATTCCCTAGTCA 57.132 37.500 0.00 0.00 0.00 3.41
1547 1570 6.867519 TGAGTGTTGATATTCCCTAGTCAA 57.132 37.500 0.00 0.00 0.00 3.18
1548 1571 7.252612 TGAGTGTTGATATTCCCTAGTCAAA 57.747 36.000 0.00 0.00 32.93 2.69
1549 1572 7.685481 TGAGTGTTGATATTCCCTAGTCAAAA 58.315 34.615 0.00 0.00 32.93 2.44
1550 1573 8.328758 TGAGTGTTGATATTCCCTAGTCAAAAT 58.671 33.333 0.00 0.00 32.93 1.82
1551 1574 9.178758 GAGTGTTGATATTCCCTAGTCAAAATT 57.821 33.333 0.00 0.00 32.93 1.82
1552 1575 9.533831 AGTGTTGATATTCCCTAGTCAAAATTT 57.466 29.630 0.00 0.00 32.93 1.82
1553 1576 9.573133 GTGTTGATATTCCCTAGTCAAAATTTG 57.427 33.333 0.00 0.00 32.93 2.32
1554 1577 8.250332 TGTTGATATTCCCTAGTCAAAATTTGC 58.750 33.333 0.00 0.00 32.93 3.68
1555 1578 8.470002 GTTGATATTCCCTAGTCAAAATTTGCT 58.530 33.333 0.00 4.60 32.93 3.91
1556 1579 9.693739 TTGATATTCCCTAGTCAAAATTTGCTA 57.306 29.630 0.00 5.48 0.00 3.49
1557 1580 9.120538 TGATATTCCCTAGTCAAAATTTGCTAC 57.879 33.333 0.00 0.00 0.00 3.58
1558 1581 9.120538 GATATTCCCTAGTCAAAATTTGCTACA 57.879 33.333 0.00 0.00 0.00 2.74
1562 1585 7.601856 TCCCTAGTCAAAATTTGCTACATTTG 58.398 34.615 0.00 0.00 34.81 2.32
1563 1586 6.813152 CCCTAGTCAAAATTTGCTACATTTGG 59.187 38.462 0.00 3.96 34.39 3.28
1574 1597 8.816640 ATTTGCTACATTTGGTTTAAGACAAG 57.183 30.769 0.00 0.00 0.00 3.16
1605 1632 9.163899 GTATGTAGACTAAAAAGAAAAGGAGGG 57.836 37.037 0.00 0.00 0.00 4.30
1606 1633 7.383156 TGTAGACTAAAAAGAAAAGGAGGGA 57.617 36.000 0.00 0.00 0.00 4.20
1608 1635 5.317808 AGACTAAAAAGAAAAGGAGGGAGC 58.682 41.667 0.00 0.00 0.00 4.70
1612 1640 2.575805 AAGAAAAGGAGGGAGCACTG 57.424 50.000 0.00 0.00 0.00 3.66
1620 1648 3.780626 AGGAGGGAGCACTGGTATATAC 58.219 50.000 4.14 4.14 0.00 1.47
1631 1659 7.212976 AGCACTGGTATATACTTTGTCTGATG 58.787 38.462 12.54 1.26 0.00 3.07
1666 1723 6.872547 TCTCTGATGACTCTATATGCAAATGC 59.127 38.462 0.00 0.00 42.50 3.56
1667 1724 6.766429 TCTGATGACTCTATATGCAAATGCT 58.234 36.000 6.97 0.00 42.66 3.79
1668 1725 7.222161 TCTGATGACTCTATATGCAAATGCTT 58.778 34.615 6.97 2.98 42.66 3.91
1669 1726 7.387122 TCTGATGACTCTATATGCAAATGCTTC 59.613 37.037 6.97 0.00 42.66 3.86
1670 1727 6.993902 TGATGACTCTATATGCAAATGCTTCA 59.006 34.615 6.97 0.00 42.66 3.02
1671 1728 7.499895 TGATGACTCTATATGCAAATGCTTCAA 59.500 33.333 6.97 0.00 42.66 2.69
1672 1729 7.255491 TGACTCTATATGCAAATGCTTCAAG 57.745 36.000 6.97 2.48 42.66 3.02
1673 1730 6.069684 ACTCTATATGCAAATGCTTCAAGC 57.930 37.500 1.04 1.04 42.82 4.01
1750 1807 3.872696 TGTATTACCACTGCCATCACAG 58.127 45.455 0.00 0.00 43.59 3.66
1757 1814 0.467844 ACTGCCATCACAGCAACCAA 60.468 50.000 0.00 0.00 41.60 3.67
1758 1815 0.038892 CTGCCATCACAGCAACCAAC 60.039 55.000 0.00 0.00 40.35 3.77
1759 1816 1.290009 GCCATCACAGCAACCAACC 59.710 57.895 0.00 0.00 0.00 3.77
1760 1817 1.462731 GCCATCACAGCAACCAACCA 61.463 55.000 0.00 0.00 0.00 3.67
1761 1818 0.314935 CCATCACAGCAACCAACCAC 59.685 55.000 0.00 0.00 0.00 4.16
1777 1834 8.670135 CAACCAACCACTACGATGATAAATTAA 58.330 33.333 0.00 0.00 0.00 1.40
1800 1857 9.513906 TTAATGTACATGTTCCAATCAAAGAGA 57.486 29.630 9.63 0.00 0.00 3.10
1801 1858 8.408043 AATGTACATGTTCCAATCAAAGAGAA 57.592 30.769 9.63 0.00 0.00 2.87
1802 1859 7.202016 TGTACATGTTCCAATCAAAGAGAAC 57.798 36.000 2.30 0.00 39.22 3.01
1807 1864 4.516698 TGTTCCAATCAAAGAGAACAGAGC 59.483 41.667 0.54 0.00 42.61 4.09
1808 1865 4.356405 TCCAATCAAAGAGAACAGAGCA 57.644 40.909 0.00 0.00 0.00 4.26
1809 1866 4.717877 TCCAATCAAAGAGAACAGAGCAA 58.282 39.130 0.00 0.00 0.00 3.91
1810 1867 4.516698 TCCAATCAAAGAGAACAGAGCAAC 59.483 41.667 0.00 0.00 0.00 4.17
1811 1868 4.320788 CCAATCAAAGAGAACAGAGCAACC 60.321 45.833 0.00 0.00 0.00 3.77
1812 1869 3.558931 TCAAAGAGAACAGAGCAACCA 57.441 42.857 0.00 0.00 0.00 3.67
1813 1870 3.884895 TCAAAGAGAACAGAGCAACCAA 58.115 40.909 0.00 0.00 0.00 3.67
1814 1871 4.269183 TCAAAGAGAACAGAGCAACCAAA 58.731 39.130 0.00 0.00 0.00 3.28
1855 1912 7.498570 TGCTGTTTCTTGTATGCATGATGTATA 59.501 33.333 10.16 0.00 0.00 1.47
1884 1941 5.845985 TTCTTTCAGTTCTATGCTCAACG 57.154 39.130 0.00 0.00 0.00 4.10
1962 2019 3.322191 GGGGGTCCCTAAATATGCAAA 57.678 47.619 8.15 0.00 41.34 3.68
2027 2084 2.372172 GGTTGACCTTTCCCTCTCTCAA 59.628 50.000 0.00 0.00 0.00 3.02
2044 2101 2.871633 CTCAACAAAACCACCCAAATGC 59.128 45.455 0.00 0.00 0.00 3.56
2077 2134 3.329542 GACCCAATCCTGCAGCCGA 62.330 63.158 8.66 0.87 0.00 5.54
2123 2180 1.134788 CCCAACGGTGACATCTACTCC 60.135 57.143 0.00 0.00 0.00 3.85
2156 2213 2.224877 TGGGTTACCGGATGGCACA 61.225 57.895 9.46 0.00 41.95 4.57
2246 2303 2.568090 GGCAGAACAACATGGCCG 59.432 61.111 0.00 0.00 36.06 6.13
2252 2309 1.164411 GAACAACATGGCCGTCATCA 58.836 50.000 0.00 0.00 32.92 3.07
2267 2324 2.621055 GTCATCAGGAGCTGTCTACGAT 59.379 50.000 0.00 0.00 32.61 3.73
2270 2327 0.249238 CAGGAGCTGTCTACGATGGC 60.249 60.000 0.00 0.00 0.00 4.40
2273 2330 0.317436 GAGCTGTCTACGATGGCGAG 60.317 60.000 0.00 0.00 41.64 5.03
2279 2336 2.211806 GTCTACGATGGCGAGTACTCT 58.788 52.381 20.34 1.44 41.64 3.24
2282 2339 1.032657 ACGATGGCGAGTACTCTGCT 61.033 55.000 27.01 15.81 41.64 4.24
2285 2342 2.202810 GGCGAGTACTCTGCTGGC 60.203 66.667 27.01 19.74 37.04 4.85
2294 2351 0.539051 ACTCTGCTGGCTACATGGAC 59.461 55.000 0.00 0.00 0.00 4.02
2315 2372 2.489971 GGTGAAGGAACACATGTCGAA 58.510 47.619 0.00 0.00 41.88 3.71
2352 2409 1.305549 AAGGGGCAATGGAAGCTGG 60.306 57.895 0.00 0.00 0.00 4.85
2390 2447 0.594602 GCTTCCAAACGTACCCCAAC 59.405 55.000 0.00 0.00 0.00 3.77
2406 2463 1.469251 CCAACGGAGACACATACCTCG 60.469 57.143 0.00 0.00 0.00 4.63
2457 2514 0.908910 TGGTAGGTACACATGGGCAG 59.091 55.000 0.00 0.00 0.00 4.85
2463 2520 1.026718 GTACACATGGGCAGCAGACC 61.027 60.000 0.00 0.00 46.36 3.85
2567 2624 3.858868 GAACTGGCTCGGCGACACA 62.859 63.158 4.99 7.07 0.00 3.72
2573 2630 2.753966 GCTCGGCGACACAATGCAT 61.754 57.895 4.99 0.00 0.00 3.96
2582 2639 0.037590 ACACAATGCATGGGTACGGT 59.962 50.000 5.94 0.00 46.31 4.83
2598 2655 0.947180 CGGTTTGTACACGTGGGAGG 60.947 60.000 21.57 0.00 0.00 4.30
2663 2720 2.556286 GAAGGGCACTTTCTTCCCG 58.444 57.895 0.84 0.00 44.70 5.14
2683 2740 1.313812 AAATCTCGCGGAGTCCTCGT 61.314 55.000 20.35 0.00 0.00 4.18
2741 2798 1.271054 GGTGTTCTGCCTGACATCACT 60.271 52.381 0.00 0.00 0.00 3.41
2764 2821 2.362736 TGTCATGCAATGCTCCTCTTC 58.637 47.619 6.82 0.00 46.21 2.87
2771 2828 2.548875 CAATGCTCCTCTTCCTTCGAG 58.451 52.381 0.00 0.00 0.00 4.04
2846 2903 5.179045 ACAACTTGAGTTTTGATCAGCAG 57.821 39.130 0.00 0.00 35.83 4.24
2865 2922 4.026300 CTCCCTCAGAGAAGCCGT 57.974 61.111 0.00 0.00 46.50 5.68
2877 2934 0.793250 GAAGCCGTCTTTGCAGAGAC 59.207 55.000 23.90 23.90 42.05 3.36
3003 3060 1.550327 AGGTGTTCTGATCAGCGAGA 58.450 50.000 18.36 4.84 38.18 4.04
3032 3089 0.655733 ACAACGGCAACTCAGAAACG 59.344 50.000 0.00 0.00 0.00 3.60
3115 3172 4.130118 GAGACGATAATCAAAGGGCACAT 58.870 43.478 0.00 0.00 0.00 3.21
3140 3197 3.933955 GCTATGATCTAATGCTCAGCCTG 59.066 47.826 0.00 0.00 0.00 4.85
3160 3217 3.282021 TGCAGCTTGGAATCAGGTAATC 58.718 45.455 0.00 0.00 0.00 1.75
3162 3219 3.889815 CAGCTTGGAATCAGGTAATCCA 58.110 45.455 0.00 0.00 41.36 3.41
3177 3234 8.638873 TCAGGTAATCCATACATGTAGTACAAG 58.361 37.037 11.91 5.45 44.58 3.16
3234 3291 7.128883 AGAGGACTTTCTTCTCTCTATCTACCT 59.871 40.741 0.00 0.00 33.01 3.08
3235 3292 7.060421 AGGACTTTCTTCTCTCTATCTACCTG 58.940 42.308 0.00 0.00 0.00 4.00
3263 3320 3.149436 GCGGTTGCATTGACATGTAAT 57.851 42.857 0.00 0.00 37.34 1.89
3369 3426 4.021456 GGGGTTTCTTGTTGAATACCCAAG 60.021 45.833 19.81 0.00 46.28 3.61
3545 3602 1.815421 CGGCTTACTCCTGCGCATT 60.815 57.895 12.24 0.00 0.00 3.56
3546 3603 1.723870 GGCTTACTCCTGCGCATTG 59.276 57.895 12.24 5.48 0.00 2.82
3778 3835 5.988561 CCTCATTTGAATAGCTAGTCAGACC 59.011 44.000 21.77 0.00 31.51 3.85
3791 3848 5.480073 GCTAGTCAGACCTCCTCATGATATT 59.520 44.000 0.00 0.00 0.00 1.28
3948 4005 1.373570 CCGGAAAGAGTGGAAGCATC 58.626 55.000 0.00 0.00 0.00 3.91
3954 4011 5.465051 GGAAAGAGTGGAAGCATCTTTTTC 58.535 41.667 1.38 0.00 41.95 2.29
4168 4225 6.374333 TGGTTTTGTAGCTCACTTATTGATCC 59.626 38.462 0.00 0.00 32.17 3.36
4558 4615 6.961359 TGTTTCTCTAACATATCACGGTTG 57.039 37.500 0.00 0.00 41.73 3.77
4727 4798 5.218885 TGATTGTTTGTATTTGCAGTTCCG 58.781 37.500 0.00 0.00 0.00 4.30
4728 4799 4.902443 TTGTTTGTATTTGCAGTTCCGA 57.098 36.364 0.00 0.00 0.00 4.55
4888 4959 7.987458 TGAACTATTCATTTTATCTCGAGCCTT 59.013 33.333 7.81 0.00 34.08 4.35
4954 5025 8.065473 TGACAAAAATGTATTGCCATGACTAT 57.935 30.769 0.00 0.00 0.00 2.12
4963 5034 8.121305 TGTATTGCCATGACTATTTTTGAGTT 57.879 30.769 0.00 0.00 0.00 3.01
5063 5134 3.507622 GGATTACAGCTTGCTTCTTGGTT 59.492 43.478 0.00 0.00 0.00 3.67
5124 5195 1.985473 TGCCATGAAAGTCTTGTGCT 58.015 45.000 0.00 0.00 0.00 4.40
5135 5206 4.672587 AGTCTTGTGCTAGACAAACTGA 57.327 40.909 14.17 0.00 44.14 3.41
5139 5210 3.552132 TGTGCTAGACAAACTGACCAA 57.448 42.857 0.00 0.00 0.00 3.67
5163 5234 5.081728 TCTTACAGAAGGTGGTAAGCACTA 58.918 41.667 6.67 0.00 43.79 2.74
5277 5348 7.223582 TGTGTTGGTTAATTGTTGCTAATGTTG 59.776 33.333 0.00 0.00 0.00 3.33
5621 5692 3.311486 AGAGCGGAGAAACAAGAAGAG 57.689 47.619 0.00 0.00 0.00 2.85
5795 5866 2.826128 ACCACAATTCTACTCAGAGCGA 59.174 45.455 0.00 0.00 30.73 4.93
5955 6026 9.883142 TTCTATGTTGATGTACATGTGTATGAA 57.117 29.630 14.43 6.80 39.06 2.57
6009 6081 5.841957 AGCATGGTTTTGACATAGGATTC 57.158 39.130 0.00 0.00 0.00 2.52
6092 6164 4.574828 TCCTTATAGCCTTTTTCATGCGAC 59.425 41.667 0.00 0.00 0.00 5.19
6096 6168 1.890174 CCTTTTTCATGCGACCCCC 59.110 57.895 0.00 0.00 0.00 5.40
6126 6198 4.450053 GCTGGTAGCTCATGATCTTCTTT 58.550 43.478 4.07 0.00 38.45 2.52
6168 6240 3.282831 ACGAAGTTGCATAACCTTTGC 57.717 42.857 0.00 0.00 37.78 3.68
6180 6252 8.789825 TGCATAACCTTTGCATATTGAAATTT 57.210 26.923 0.00 0.00 44.73 1.82
6181 6253 9.228949 TGCATAACCTTTGCATATTGAAATTTT 57.771 25.926 0.00 0.00 44.73 1.82
6298 6370 7.493645 AGAAAGGAAAAAGATGCAACTTCAAAG 59.506 33.333 9.90 0.00 0.00 2.77
6311 6384 5.617751 GCAACTTCAAAGCGTCAGTGATAAT 60.618 40.000 0.00 0.00 0.00 1.28
6359 6432 7.042335 CAGTTTTCGAGGGTAGAGTATTCAAT 58.958 38.462 0.00 0.00 0.00 2.57
6394 6467 0.821711 CGACACAAGGGGAGCCAAAA 60.822 55.000 0.00 0.00 0.00 2.44
6671 6744 9.599866 CAGTCATAACATAAGGTGATACAGAAA 57.400 33.333 0.00 0.00 0.00 2.52
6733 6806 7.120138 TCCGAATATAGTCATACGTGCTTATGA 59.880 37.037 0.00 0.00 36.34 2.15
6795 6868 1.133792 CAGCGGGGTCCTAATGGAAAT 60.134 52.381 0.00 0.00 45.18 2.17
6986 7059 9.821240 AGATAGGATCAAGAACTCACATATACT 57.179 33.333 0.00 0.00 0.00 2.12
6990 7063 9.821240 AGGATCAAGAACTCACATATACTAGAT 57.179 33.333 0.00 0.00 0.00 1.98
7000 7073 9.191479 ACTCACATATACTAGATAATACCCTGC 57.809 37.037 0.00 0.00 0.00 4.85
7001 7074 8.221965 TCACATATACTAGATAATACCCTGCG 57.778 38.462 0.00 0.00 0.00 5.18
7002 7075 6.918569 CACATATACTAGATAATACCCTGCGC 59.081 42.308 0.00 0.00 0.00 6.09
7003 7076 4.634184 ATACTAGATAATACCCTGCGCG 57.366 45.455 0.00 0.00 0.00 6.86
7004 7077 2.236766 ACTAGATAATACCCTGCGCGT 58.763 47.619 8.43 0.00 0.00 6.01
7005 7078 2.626743 ACTAGATAATACCCTGCGCGTT 59.373 45.455 8.43 0.00 0.00 4.84
7006 7079 1.865865 AGATAATACCCTGCGCGTTG 58.134 50.000 8.43 0.00 0.00 4.10
7007 7080 0.234884 GATAATACCCTGCGCGTTGC 59.765 55.000 8.43 0.00 46.70 4.17
7008 7081 0.179056 ATAATACCCTGCGCGTTGCT 60.179 50.000 8.43 0.00 46.63 3.91
7009 7082 1.087202 TAATACCCTGCGCGTTGCTG 61.087 55.000 8.43 3.00 46.63 4.41
7022 7095 4.961637 TGCTGCGGCATTCATAGT 57.038 50.000 18.37 0.00 44.28 2.12
7023 7096 2.396700 TGCTGCGGCATTCATAGTG 58.603 52.632 18.37 0.00 44.28 2.74
7024 7097 0.392863 TGCTGCGGCATTCATAGTGT 60.393 50.000 18.37 0.00 44.28 3.55
7025 7098 0.028505 GCTGCGGCATTCATAGTGTG 59.971 55.000 14.08 0.00 38.54 3.82
7026 7099 1.655484 CTGCGGCATTCATAGTGTGA 58.345 50.000 1.75 0.00 34.25 3.58
7027 7100 1.596260 CTGCGGCATTCATAGTGTGAG 59.404 52.381 1.75 0.00 38.29 3.51
7028 7101 0.305922 GCGGCATTCATAGTGTGAGC 59.694 55.000 0.00 0.00 38.29 4.26
7029 7102 1.655484 CGGCATTCATAGTGTGAGCA 58.345 50.000 4.00 0.00 38.29 4.26
7030 7103 2.009051 CGGCATTCATAGTGTGAGCAA 58.991 47.619 4.00 0.00 38.29 3.91
7031 7104 2.615447 CGGCATTCATAGTGTGAGCAAT 59.385 45.455 4.00 0.00 38.29 3.56
7032 7105 3.065786 CGGCATTCATAGTGTGAGCAATT 59.934 43.478 4.00 0.00 38.29 2.32
7033 7106 4.439153 CGGCATTCATAGTGTGAGCAATTT 60.439 41.667 4.00 0.00 38.29 1.82
7034 7107 4.802039 GGCATTCATAGTGTGAGCAATTTG 59.198 41.667 4.00 0.00 38.29 2.32
7035 7108 4.802039 GCATTCATAGTGTGAGCAATTTGG 59.198 41.667 0.00 0.00 38.29 3.28
7036 7109 5.393352 GCATTCATAGTGTGAGCAATTTGGA 60.393 40.000 0.00 0.00 38.29 3.53
7037 7110 6.682113 GCATTCATAGTGTGAGCAATTTGGAT 60.682 38.462 0.00 0.00 38.29 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 4.081917 CAGGTTATCTAAGCTAGCCTAGGC 60.082 50.000 27.19 27.19 41.62 3.93
143 144 5.184287 GTCAGGTTATCTAAGCTAGCCTAGG 59.816 48.000 18.25 3.67 41.62 3.02
144 145 5.106475 CGTCAGGTTATCTAAGCTAGCCTAG 60.106 48.000 12.13 12.83 41.62 3.02
145 146 4.760715 CGTCAGGTTATCTAAGCTAGCCTA 59.239 45.833 12.13 1.14 41.62 3.93
147 148 3.318557 ACGTCAGGTTATCTAAGCTAGCC 59.681 47.826 12.13 0.00 41.62 3.93
150 151 5.128205 TGCTACGTCAGGTTATCTAAGCTA 58.872 41.667 0.00 0.00 41.62 3.32
151 152 3.952323 TGCTACGTCAGGTTATCTAAGCT 59.048 43.478 0.00 0.00 44.08 3.74
152 153 4.303086 TGCTACGTCAGGTTATCTAAGC 57.697 45.455 0.00 0.00 0.00 3.09
153 154 6.205853 AGAGATGCTACGTCAGGTTATCTAAG 59.794 42.308 0.00 0.00 0.00 2.18
154 155 6.017026 CAGAGATGCTACGTCAGGTTATCTAA 60.017 42.308 0.00 0.00 0.00 2.10
155 156 5.470437 CAGAGATGCTACGTCAGGTTATCTA 59.530 44.000 0.00 0.00 0.00 1.98
156 157 4.277174 CAGAGATGCTACGTCAGGTTATCT 59.723 45.833 0.00 0.00 0.00 1.98
157 158 4.036971 ACAGAGATGCTACGTCAGGTTATC 59.963 45.833 0.00 0.00 0.00 1.75
158 159 3.954904 ACAGAGATGCTACGTCAGGTTAT 59.045 43.478 0.00 0.00 0.00 1.89
159 160 3.128764 CACAGAGATGCTACGTCAGGTTA 59.871 47.826 0.00 0.00 0.00 2.85
160 161 2.094494 CACAGAGATGCTACGTCAGGTT 60.094 50.000 0.00 0.00 0.00 3.50
161 162 1.474478 CACAGAGATGCTACGTCAGGT 59.526 52.381 0.00 0.00 0.00 4.00
162 163 1.800655 GCACAGAGATGCTACGTCAGG 60.801 57.143 0.00 0.00 42.62 3.86
163 164 1.135286 TGCACAGAGATGCTACGTCAG 60.135 52.381 0.00 0.00 46.28 3.51
164 165 0.887933 TGCACAGAGATGCTACGTCA 59.112 50.000 0.00 0.00 46.28 4.35
165 166 1.857217 CATGCACAGAGATGCTACGTC 59.143 52.381 0.00 0.00 46.28 4.34
166 167 1.931906 CATGCACAGAGATGCTACGT 58.068 50.000 0.00 0.00 46.28 3.57
167 168 0.580578 GCATGCACAGAGATGCTACG 59.419 55.000 14.21 0.00 46.28 3.51
168 169 1.660167 TGCATGCACAGAGATGCTAC 58.340 50.000 18.46 0.00 46.28 3.58
169 170 2.218603 CATGCATGCACAGAGATGCTA 58.781 47.619 25.37 0.00 46.28 3.49
170 171 1.025041 CATGCATGCACAGAGATGCT 58.975 50.000 25.37 0.00 46.28 3.79
244 245 6.564709 ATTATATGATTGTGCGCATCACTT 57.435 33.333 15.91 7.27 45.81 3.16
246 247 5.060077 GCAATTATATGATTGTGCGCATCAC 59.940 40.000 15.91 0.09 45.82 3.06
306 311 9.677567 GACAAAAACTAAAAGAATGTAGCATGA 57.322 29.630 0.00 0.00 0.00 3.07
479 487 1.667756 CGCAACATGCATGCTTCTTGT 60.668 47.619 26.53 13.81 45.36 3.16
502 510 1.738432 CAGCTCGCAGATGCCTAGA 59.262 57.895 0.00 0.00 37.91 2.43
503 511 4.340076 CAGCTCGCAGATGCCTAG 57.660 61.111 0.00 0.00 37.91 3.02
508 516 1.362768 TACAAAGCAGCTCGCAGATG 58.637 50.000 0.00 8.02 46.13 2.90
509 517 2.322355 ATACAAAGCAGCTCGCAGAT 57.678 45.000 0.00 0.00 46.13 2.90
511 519 1.733912 TGAATACAAAGCAGCTCGCAG 59.266 47.619 0.00 3.36 46.13 5.18
513 521 2.900122 TTGAATACAAAGCAGCTCGC 57.100 45.000 0.00 0.47 42.91 5.03
514 522 5.725110 ACTATTGAATACAAAGCAGCTCG 57.275 39.130 0.00 0.00 39.54 5.03
515 523 9.050601 AGAATACTATTGAATACAAAGCAGCTC 57.949 33.333 0.00 0.00 39.54 4.09
516 524 8.970859 AGAATACTATTGAATACAAAGCAGCT 57.029 30.769 0.00 0.00 39.54 4.24
517 525 9.050601 AGAGAATACTATTGAATACAAAGCAGC 57.949 33.333 0.00 0.00 39.54 5.25
519 527 9.547753 GGAGAGAATACTATTGAATACAAAGCA 57.452 33.333 0.00 0.00 39.54 3.91
520 528 8.704234 CGGAGAGAATACTATTGAATACAAAGC 58.296 37.037 0.00 0.00 39.54 3.51
521 529 9.751542 ACGGAGAGAATACTATTGAATACAAAG 57.248 33.333 0.00 0.00 39.54 2.77
523 531 9.745880 GAACGGAGAGAATACTATTGAATACAA 57.254 33.333 0.00 0.00 40.42 2.41
524 532 8.358148 GGAACGGAGAGAATACTATTGAATACA 58.642 37.037 0.00 0.00 0.00 2.29
525 533 8.358148 TGGAACGGAGAGAATACTATTGAATAC 58.642 37.037 0.00 0.00 0.00 1.89
546 554 2.004733 GGGCGTACTACATTGTGGAAC 58.995 52.381 7.20 0.00 37.35 3.62
569 577 9.503427 CTAAATTTATGGTCAAAGATCGGAAAC 57.497 33.333 0.00 0.00 0.00 2.78
570 578 8.188139 GCTAAATTTATGGTCAAAGATCGGAAA 58.812 33.333 0.00 0.00 0.00 3.13
571 579 7.201785 GGCTAAATTTATGGTCAAAGATCGGAA 60.202 37.037 0.00 0.00 0.00 4.30
572 580 6.262273 GGCTAAATTTATGGTCAAAGATCGGA 59.738 38.462 0.00 0.00 0.00 4.55
573 581 6.039270 TGGCTAAATTTATGGTCAAAGATCGG 59.961 38.462 0.00 0.00 0.00 4.18
574 582 7.026631 TGGCTAAATTTATGGTCAAAGATCG 57.973 36.000 0.00 0.00 0.00 3.69
575 583 7.432252 CGTTGGCTAAATTTATGGTCAAAGATC 59.568 37.037 10.25 0.00 0.00 2.75
576 584 7.122055 TCGTTGGCTAAATTTATGGTCAAAGAT 59.878 33.333 12.87 0.00 0.00 2.40
577 585 6.431543 TCGTTGGCTAAATTTATGGTCAAAGA 59.568 34.615 12.87 12.87 0.00 2.52
578 586 6.616947 TCGTTGGCTAAATTTATGGTCAAAG 58.383 36.000 6.17 8.14 0.00 2.77
582 590 5.585047 AGTCTCGTTGGCTAAATTTATGGTC 59.415 40.000 0.00 0.00 0.00 4.02
584 592 5.584649 TCAGTCTCGTTGGCTAAATTTATGG 59.415 40.000 0.00 0.00 0.00 2.74
586 594 7.336931 ACAATCAGTCTCGTTGGCTAAATTTAT 59.663 33.333 0.00 0.00 0.00 1.40
595 603 0.798776 CCACAATCAGTCTCGTTGGC 59.201 55.000 0.00 0.00 0.00 4.52
605 613 2.420628 TTTGCTTTCGCCACAATCAG 57.579 45.000 0.00 0.00 34.43 2.90
609 617 6.701841 TGTTATAATTTTTGCTTTCGCCACAA 59.298 30.769 0.00 0.00 34.43 3.33
632 640 9.577110 TTCGTACTTTCGATATGAATTAAGTGT 57.423 29.630 5.37 0.00 39.57 3.55
663 671 2.941428 CGGGAGCAAAAATTGTACCAC 58.059 47.619 0.00 0.00 32.60 4.16
693 701 7.117241 TGATCGTCAGTTTAATCAACAAGAC 57.883 36.000 0.00 0.00 38.42 3.01
697 705 7.490962 AGTTTGATCGTCAGTTTAATCAACA 57.509 32.000 0.00 0.00 37.73 3.33
702 710 9.003658 AGATTCAAGTTTGATCGTCAGTTTAAT 57.996 29.630 0.00 0.00 37.00 1.40
710 718 3.307242 CCCGAGATTCAAGTTTGATCGTC 59.693 47.826 12.57 5.48 36.19 4.20
716 724 2.159653 CGCTTCCCGAGATTCAAGTTTG 60.160 50.000 0.00 0.00 40.02 2.93
740 748 2.226437 CCATTCCACAATATAGTGCGCC 59.774 50.000 4.18 0.00 38.18 6.53
749 757 4.631234 ACTACTCCCTCCATTCCACAATA 58.369 43.478 0.00 0.00 0.00 1.90
761 769 6.755607 CCGACAAAATTTACTACTACTCCCTC 59.244 42.308 0.00 0.00 0.00 4.30
802 810 2.037251 AGTAGAGCCAAACGAAGAAGCA 59.963 45.455 0.00 0.00 0.00 3.91
803 811 2.689646 AGTAGAGCCAAACGAAGAAGC 58.310 47.619 0.00 0.00 0.00 3.86
804 812 7.169982 CCAATATAGTAGAGCCAAACGAAGAAG 59.830 40.741 0.00 0.00 0.00 2.85
805 813 6.984474 CCAATATAGTAGAGCCAAACGAAGAA 59.016 38.462 0.00 0.00 0.00 2.52
806 814 6.513180 CCAATATAGTAGAGCCAAACGAAGA 58.487 40.000 0.00 0.00 0.00 2.87
807 815 5.177696 GCCAATATAGTAGAGCCAAACGAAG 59.822 44.000 0.00 0.00 0.00 3.79
808 816 5.054477 GCCAATATAGTAGAGCCAAACGAA 58.946 41.667 0.00 0.00 0.00 3.85
809 817 4.100344 TGCCAATATAGTAGAGCCAAACGA 59.900 41.667 0.00 0.00 0.00 3.85
810 818 4.377021 TGCCAATATAGTAGAGCCAAACG 58.623 43.478 0.00 0.00 0.00 3.60
811 819 5.368989 ACTGCCAATATAGTAGAGCCAAAC 58.631 41.667 0.00 0.00 0.00 2.93
812 820 5.630415 ACTGCCAATATAGTAGAGCCAAA 57.370 39.130 0.00 0.00 0.00 3.28
813 821 5.130311 TGAACTGCCAATATAGTAGAGCCAA 59.870 40.000 0.00 0.00 0.00 4.52
814 822 4.653801 TGAACTGCCAATATAGTAGAGCCA 59.346 41.667 0.00 0.00 0.00 4.75
815 823 4.991687 GTGAACTGCCAATATAGTAGAGCC 59.008 45.833 0.00 0.00 0.00 4.70
816 824 4.991687 GGTGAACTGCCAATATAGTAGAGC 59.008 45.833 0.00 0.00 0.00 4.09
817 825 6.412362 AGGTGAACTGCCAATATAGTAGAG 57.588 41.667 0.00 0.00 0.00 2.43
818 826 5.304614 GGAGGTGAACTGCCAATATAGTAGA 59.695 44.000 0.00 0.00 0.00 2.59
819 827 5.542779 GGAGGTGAACTGCCAATATAGTAG 58.457 45.833 0.00 0.00 0.00 2.57
820 828 4.038763 CGGAGGTGAACTGCCAATATAGTA 59.961 45.833 0.00 0.00 33.31 1.82
821 829 3.181465 CGGAGGTGAACTGCCAATATAGT 60.181 47.826 0.00 0.00 33.31 2.12
822 830 3.181465 ACGGAGGTGAACTGCCAATATAG 60.181 47.826 0.00 0.00 33.31 1.31
823 831 2.769663 ACGGAGGTGAACTGCCAATATA 59.230 45.455 0.00 0.00 33.31 0.86
824 832 1.559682 ACGGAGGTGAACTGCCAATAT 59.440 47.619 0.00 0.00 33.31 1.28
825 833 0.981183 ACGGAGGTGAACTGCCAATA 59.019 50.000 0.00 0.00 33.31 1.90
826 834 1.761174 ACGGAGGTGAACTGCCAAT 59.239 52.632 0.00 0.00 33.31 3.16
827 835 3.236391 ACGGAGGTGAACTGCCAA 58.764 55.556 0.00 0.00 33.31 4.52
833 841 7.630082 ATACTAAATGTACTCACGGAGGTGAAC 60.630 40.741 5.98 0.00 41.53 3.18
834 842 6.379133 ATACTAAATGTACTCACGGAGGTGAA 59.621 38.462 5.98 0.00 41.53 3.18
835 843 5.889853 ATACTAAATGTACTCACGGAGGTGA 59.110 40.000 5.98 0.00 41.30 4.02
836 844 4.451629 ACTAAATGTACTCACGGAGGTG 57.548 45.455 5.98 0.00 45.78 4.00
837 845 7.059156 ACTATACTAAATGTACTCACGGAGGT 58.941 38.462 5.98 0.00 33.35 3.85
838 846 7.507733 ACTATACTAAATGTACTCACGGAGG 57.492 40.000 5.98 0.00 33.35 4.30
839 847 8.229137 GCTACTATACTAAATGTACTCACGGAG 58.771 40.741 0.00 0.03 33.45 4.63
840 848 7.935755 AGCTACTATACTAAATGTACTCACGGA 59.064 37.037 0.00 0.00 33.45 4.69
841 849 8.097078 AGCTACTATACTAAATGTACTCACGG 57.903 38.462 0.00 0.00 33.45 4.94
869 877 8.404765 CAACTTGGCAAACATTTAGGAATTTTT 58.595 29.630 0.00 0.00 0.00 1.94
870 878 7.468494 GCAACTTGGCAAACATTTAGGAATTTT 60.468 33.333 0.00 0.00 0.00 1.82
871 879 6.017192 GCAACTTGGCAAACATTTAGGAATTT 60.017 34.615 0.00 0.00 0.00 1.82
872 880 5.469760 GCAACTTGGCAAACATTTAGGAATT 59.530 36.000 0.00 0.00 0.00 2.17
873 881 4.996758 GCAACTTGGCAAACATTTAGGAAT 59.003 37.500 0.00 0.00 0.00 3.01
874 882 4.100808 AGCAACTTGGCAAACATTTAGGAA 59.899 37.500 0.00 0.00 35.83 3.36
875 883 3.640967 AGCAACTTGGCAAACATTTAGGA 59.359 39.130 0.00 0.00 35.83 2.94
876 884 3.993920 AGCAACTTGGCAAACATTTAGG 58.006 40.909 0.00 0.00 35.83 2.69
877 885 4.318974 GCAAGCAACTTGGCAAACATTTAG 60.319 41.667 9.23 0.00 41.31 1.85
878 886 3.559242 GCAAGCAACTTGGCAAACATTTA 59.441 39.130 9.23 0.00 41.31 1.40
879 887 2.355444 GCAAGCAACTTGGCAAACATTT 59.645 40.909 9.23 0.00 41.31 2.32
880 888 1.941975 GCAAGCAACTTGGCAAACATT 59.058 42.857 9.23 0.00 41.31 2.71
881 889 1.139455 AGCAAGCAACTTGGCAAACAT 59.861 42.857 9.23 0.00 41.31 2.71
882 890 0.536260 AGCAAGCAACTTGGCAAACA 59.464 45.000 9.23 0.00 41.31 2.83
883 891 1.594397 GAAGCAAGCAACTTGGCAAAC 59.406 47.619 9.23 0.00 41.31 2.93
884 892 1.802136 CGAAGCAAGCAACTTGGCAAA 60.802 47.619 9.23 0.00 41.31 3.68
885 893 0.248990 CGAAGCAAGCAACTTGGCAA 60.249 50.000 9.23 0.00 41.31 4.52
886 894 1.359833 CGAAGCAAGCAACTTGGCA 59.640 52.632 9.23 0.00 41.31 4.92
887 895 0.661483 GACGAAGCAAGCAACTTGGC 60.661 55.000 9.23 2.35 41.31 4.52
888 896 0.947244 AGACGAAGCAAGCAACTTGG 59.053 50.000 9.23 0.00 41.31 3.61
889 897 1.334419 CCAGACGAAGCAAGCAACTTG 60.334 52.381 2.95 2.95 43.57 3.16
890 898 0.947244 CCAGACGAAGCAAGCAACTT 59.053 50.000 0.00 0.00 0.00 2.66
891 899 1.510480 GCCAGACGAAGCAAGCAACT 61.510 55.000 0.00 0.00 0.00 3.16
892 900 1.081840 GCCAGACGAAGCAAGCAAC 60.082 57.895 0.00 0.00 0.00 4.17
893 901 2.260869 GGCCAGACGAAGCAAGCAA 61.261 57.895 0.00 0.00 0.00 3.91
935 943 9.781633 CTCAATGTGGACTAGTAGTAGTAGTAT 57.218 37.037 16.13 5.28 39.78 2.12
936 944 8.766476 ACTCAATGTGGACTAGTAGTAGTAGTA 58.234 37.037 16.13 3.27 39.78 1.82
937 945 7.631933 ACTCAATGTGGACTAGTAGTAGTAGT 58.368 38.462 16.10 16.10 39.78 2.73
938 946 9.781633 ATACTCAATGTGGACTAGTAGTAGTAG 57.218 37.037 10.28 10.04 39.78 2.57
939 947 9.775854 GATACTCAATGTGGACTAGTAGTAGTA 57.224 37.037 10.28 5.40 39.78 1.82
1007 1015 3.748048 GCTCTGCTATGTCAAGTGAAACA 59.252 43.478 0.00 0.00 41.43 2.83
1017 1025 1.340889 CCTCCTCTGCTCTGCTATGTC 59.659 57.143 0.00 0.00 0.00 3.06
1049 1057 2.122167 CGACGAGAGGGAGGAAGGG 61.122 68.421 0.00 0.00 0.00 3.95
1050 1058 2.776913 GCGACGAGAGGGAGGAAGG 61.777 68.421 0.00 0.00 0.00 3.46
1051 1059 2.776913 GGCGACGAGAGGGAGGAAG 61.777 68.421 0.00 0.00 0.00 3.46
1052 1060 2.754658 GGCGACGAGAGGGAGGAA 60.755 66.667 0.00 0.00 0.00 3.36
1053 1061 3.700831 GAGGCGACGAGAGGGAGGA 62.701 68.421 0.00 0.00 0.00 3.71
1054 1062 3.213402 GAGGCGACGAGAGGGAGG 61.213 72.222 0.00 0.00 0.00 4.30
1055 1063 3.578272 CGAGGCGACGAGAGGGAG 61.578 72.222 0.00 0.00 35.09 4.30
1075 1083 0.254178 AGGGATGCTTACCTGTGCTG 59.746 55.000 1.67 0.00 35.30 4.41
1099 1117 3.700831 GACGGCGAGAGAGGGAGGA 62.701 68.421 16.62 0.00 0.00 3.71
1127 1145 1.378250 GAGGAGTGGCATGCAGCTT 60.378 57.895 21.36 1.02 44.79 3.74
1161 1179 3.740495 TAGAGCTGGCCGGAGAGGG 62.740 68.421 18.31 0.00 41.48 4.30
1169 1187 1.377725 TTGCTGCTTAGAGCTGGCC 60.378 57.895 0.00 0.00 42.97 5.36
1170 1188 1.799383 GTTGCTGCTTAGAGCTGGC 59.201 57.895 0.00 9.34 42.97 4.85
1171 1189 1.364626 CCGTTGCTGCTTAGAGCTGG 61.365 60.000 0.00 0.42 42.97 4.85
1172 1190 1.364626 CCCGTTGCTGCTTAGAGCTG 61.365 60.000 0.00 2.14 42.97 4.24
1173 1191 1.078848 CCCGTTGCTGCTTAGAGCT 60.079 57.895 0.00 0.00 42.97 4.09
1174 1192 2.754995 GCCCGTTGCTGCTTAGAGC 61.755 63.158 0.00 0.00 42.82 4.09
1175 1193 0.745845 ATGCCCGTTGCTGCTTAGAG 60.746 55.000 0.00 0.00 42.00 2.43
1176 1194 1.026182 CATGCCCGTTGCTGCTTAGA 61.026 55.000 0.00 0.00 42.00 2.10
1177 1195 1.430632 CATGCCCGTTGCTGCTTAG 59.569 57.895 0.00 0.00 42.00 2.18
1178 1196 2.045708 CCATGCCCGTTGCTGCTTA 61.046 57.895 0.00 0.00 42.00 3.09
1179 1197 3.376078 CCATGCCCGTTGCTGCTT 61.376 61.111 0.00 0.00 42.00 3.91
1180 1198 4.349503 TCCATGCCCGTTGCTGCT 62.350 61.111 0.00 0.00 42.00 4.24
1181 1199 3.818787 CTCCATGCCCGTTGCTGC 61.819 66.667 0.00 0.00 42.00 5.25
1182 1200 3.136123 CCTCCATGCCCGTTGCTG 61.136 66.667 0.00 0.00 42.00 4.41
1183 1201 4.431131 CCCTCCATGCCCGTTGCT 62.431 66.667 0.00 0.00 42.00 3.91
1185 1203 2.572333 ATTCCCCTCCATGCCCGTTG 62.572 60.000 0.00 0.00 0.00 4.10
1186 1204 1.874299 AATTCCCCTCCATGCCCGTT 61.874 55.000 0.00 0.00 0.00 4.44
1187 1205 2.284515 GAATTCCCCTCCATGCCCGT 62.285 60.000 0.00 0.00 0.00 5.28
1188 1206 1.529244 GAATTCCCCTCCATGCCCG 60.529 63.158 0.00 0.00 0.00 6.13
1189 1207 0.189327 ATGAATTCCCCTCCATGCCC 59.811 55.000 2.27 0.00 0.00 5.36
1190 1208 2.092598 AATGAATTCCCCTCCATGCC 57.907 50.000 2.27 0.00 0.00 4.40
1191 1209 4.834496 TGAATAATGAATTCCCCTCCATGC 59.166 41.667 2.27 0.00 42.97 4.06
1192 1210 6.070995 CCATGAATAATGAATTCCCCTCCATG 60.071 42.308 2.27 9.25 42.97 3.66
1193 1211 6.021030 CCATGAATAATGAATTCCCCTCCAT 58.979 40.000 2.27 0.00 42.97 3.41
1194 1212 5.135876 TCCATGAATAATGAATTCCCCTCCA 59.864 40.000 2.27 0.00 42.97 3.86
1195 1213 5.644188 TCCATGAATAATGAATTCCCCTCC 58.356 41.667 2.27 0.00 42.97 4.30
1196 1214 5.713861 CCTCCATGAATAATGAATTCCCCTC 59.286 44.000 2.27 0.00 42.97 4.30
1197 1215 5.460127 CCCTCCATGAATAATGAATTCCCCT 60.460 44.000 2.27 0.00 42.97 4.79
1198 1216 4.774200 CCCTCCATGAATAATGAATTCCCC 59.226 45.833 2.27 0.00 42.97 4.81
1199 1217 4.221482 GCCCTCCATGAATAATGAATTCCC 59.779 45.833 2.27 0.00 42.97 3.97
1200 1218 4.834496 TGCCCTCCATGAATAATGAATTCC 59.166 41.667 2.27 0.00 42.97 3.01
1201 1219 6.409524 TTGCCCTCCATGAATAATGAATTC 57.590 37.500 0.00 0.00 43.77 2.17
1202 1220 6.687139 GCTTTGCCCTCCATGAATAATGAATT 60.687 38.462 0.00 0.00 38.72 2.17
1203 1221 5.221581 GCTTTGCCCTCCATGAATAATGAAT 60.222 40.000 0.00 0.00 38.72 2.57
1204 1222 4.099881 GCTTTGCCCTCCATGAATAATGAA 59.900 41.667 0.00 0.00 38.72 2.57
1205 1223 3.638160 GCTTTGCCCTCCATGAATAATGA 59.362 43.478 0.00 0.00 38.72 2.57
1206 1224 3.640029 AGCTTTGCCCTCCATGAATAATG 59.360 43.478 0.00 0.00 35.89 1.90
1207 1225 3.919834 AGCTTTGCCCTCCATGAATAAT 58.080 40.909 0.00 0.00 0.00 1.28
1208 1226 3.386932 AGCTTTGCCCTCCATGAATAA 57.613 42.857 0.00 0.00 0.00 1.40
1209 1227 3.748668 GCTAGCTTTGCCCTCCATGAATA 60.749 47.826 7.70 0.00 0.00 1.75
1210 1228 2.941480 CTAGCTTTGCCCTCCATGAAT 58.059 47.619 0.00 0.00 0.00 2.57
1211 1229 1.683011 GCTAGCTTTGCCCTCCATGAA 60.683 52.381 7.70 0.00 0.00 2.57
1212 1230 0.107017 GCTAGCTTTGCCCTCCATGA 60.107 55.000 7.70 0.00 0.00 3.07
1213 1231 0.106819 AGCTAGCTTTGCCCTCCATG 60.107 55.000 12.68 0.00 0.00 3.66
1214 1232 0.106819 CAGCTAGCTTTGCCCTCCAT 60.107 55.000 16.46 0.00 0.00 3.41
1215 1233 1.300963 CAGCTAGCTTTGCCCTCCA 59.699 57.895 16.46 0.00 0.00 3.86
1216 1234 1.452833 CCAGCTAGCTTTGCCCTCC 60.453 63.158 16.46 0.00 0.00 4.30
1217 1235 0.182299 ATCCAGCTAGCTTTGCCCTC 59.818 55.000 16.46 0.00 0.00 4.30
1218 1236 1.511613 TATCCAGCTAGCTTTGCCCT 58.488 50.000 16.46 0.00 0.00 5.19
1219 1237 2.225467 CTTATCCAGCTAGCTTTGCCC 58.775 52.381 16.46 0.00 0.00 5.36
1220 1238 1.606189 GCTTATCCAGCTAGCTTTGCC 59.394 52.381 16.46 0.00 46.27 4.52
1230 1248 5.906113 TCTAGTATAGCAGCTTATCCAGC 57.094 43.478 0.00 0.00 43.57 4.85
1231 1249 6.096705 AGCATCTAGTATAGCAGCTTATCCAG 59.903 42.308 0.00 0.00 42.89 3.86
1232 1250 5.954752 AGCATCTAGTATAGCAGCTTATCCA 59.045 40.000 0.00 0.00 42.89 3.41
1233 1251 6.463995 AGCATCTAGTATAGCAGCTTATCC 57.536 41.667 0.00 0.00 42.89 2.59
1238 1256 5.774690 AGAGAAAGCATCTAGTATAGCAGCT 59.225 40.000 0.00 0.00 45.78 4.24
1239 1257 6.024552 AGAGAAAGCATCTAGTATAGCAGC 57.975 41.667 0.00 0.00 38.96 5.25
1240 1258 7.594758 GTGAAGAGAAAGCATCTAGTATAGCAG 59.405 40.741 0.00 0.00 38.96 4.24
1241 1259 7.286546 AGTGAAGAGAAAGCATCTAGTATAGCA 59.713 37.037 0.00 0.00 38.96 3.49
1242 1260 7.594758 CAGTGAAGAGAAAGCATCTAGTATAGC 59.405 40.741 0.00 0.00 38.96 2.97
1243 1261 7.594758 GCAGTGAAGAGAAAGCATCTAGTATAG 59.405 40.741 0.00 0.00 38.96 1.31
1244 1262 7.068716 TGCAGTGAAGAGAAAGCATCTAGTATA 59.931 37.037 0.00 0.00 38.96 1.47
1245 1263 6.127225 TGCAGTGAAGAGAAAGCATCTAGTAT 60.127 38.462 0.00 0.00 38.96 2.12
1246 1264 5.185828 TGCAGTGAAGAGAAAGCATCTAGTA 59.814 40.000 0.00 0.00 38.96 1.82
1247 1265 4.020751 TGCAGTGAAGAGAAAGCATCTAGT 60.021 41.667 0.00 0.00 38.96 2.57
1248 1266 4.502016 TGCAGTGAAGAGAAAGCATCTAG 58.498 43.478 0.00 0.00 38.96 2.43
1249 1267 4.541973 TGCAGTGAAGAGAAAGCATCTA 57.458 40.909 0.00 0.00 38.96 1.98
1250 1268 3.413846 TGCAGTGAAGAGAAAGCATCT 57.586 42.857 0.00 0.00 42.61 2.90
1251 1269 4.698583 AATGCAGTGAAGAGAAAGCATC 57.301 40.909 0.00 0.00 41.37 3.91
1252 1270 4.806330 CAAATGCAGTGAAGAGAAAGCAT 58.194 39.130 0.00 0.00 43.79 3.79
1253 1271 3.551454 GCAAATGCAGTGAAGAGAAAGCA 60.551 43.478 4.40 0.00 41.59 3.91
1254 1272 2.985139 GCAAATGCAGTGAAGAGAAAGC 59.015 45.455 4.40 0.00 41.59 3.51
1279 1297 2.283298 AGAGAAACTGCCGCATGTATG 58.717 47.619 0.00 0.00 0.00 2.39
1309 1327 1.754226 GACAGGAGAAGGAGAAGCGAT 59.246 52.381 0.00 0.00 0.00 4.58
1314 1332 3.580458 CTGAAAGGACAGGAGAAGGAGAA 59.420 47.826 0.00 0.00 34.64 2.87
1357 1379 4.234574 GCAAAGTGAAAATAAACGGAGGG 58.765 43.478 0.00 0.00 0.00 4.30
1519 1542 8.738645 ACTAGGGAATATCAACACTCAAAATC 57.261 34.615 0.00 0.00 0.00 2.17
1525 1548 8.738645 ATTTTGACTAGGGAATATCAACACTC 57.261 34.615 0.00 0.00 30.99 3.51
1526 1549 9.533831 AAATTTTGACTAGGGAATATCAACACT 57.466 29.630 0.00 0.00 30.99 3.55
1527 1550 9.573133 CAAATTTTGACTAGGGAATATCAACAC 57.427 33.333 2.88 0.00 30.99 3.32
1528 1551 8.250332 GCAAATTTTGACTAGGGAATATCAACA 58.750 33.333 13.26 0.00 30.99 3.33
1529 1552 8.470002 AGCAAATTTTGACTAGGGAATATCAAC 58.530 33.333 13.26 0.00 30.99 3.18
1530 1553 8.593945 AGCAAATTTTGACTAGGGAATATCAA 57.406 30.769 13.26 0.00 0.00 2.57
1531 1554 9.120538 GTAGCAAATTTTGACTAGGGAATATCA 57.879 33.333 13.26 0.00 0.00 2.15
1532 1555 9.120538 TGTAGCAAATTTTGACTAGGGAATATC 57.879 33.333 13.26 1.74 0.00 1.63
1533 1556 9.646522 ATGTAGCAAATTTTGACTAGGGAATAT 57.353 29.630 13.26 0.00 0.00 1.28
1535 1558 7.961326 ATGTAGCAAATTTTGACTAGGGAAT 57.039 32.000 13.26 3.93 0.00 3.01
1536 1559 7.775053 AATGTAGCAAATTTTGACTAGGGAA 57.225 32.000 13.26 2.19 0.00 3.97
1537 1560 7.309744 CCAAATGTAGCAAATTTTGACTAGGGA 60.310 37.037 13.26 2.74 32.17 4.20
1538 1561 6.813152 CCAAATGTAGCAAATTTTGACTAGGG 59.187 38.462 13.26 6.90 32.17 3.53
1539 1562 7.378181 ACCAAATGTAGCAAATTTTGACTAGG 58.622 34.615 13.26 11.54 32.17 3.02
1543 1566 9.862585 CTTAAACCAAATGTAGCAAATTTTGAC 57.137 29.630 13.26 3.94 32.17 3.18
1544 1567 9.823647 TCTTAAACCAAATGTAGCAAATTTTGA 57.176 25.926 13.26 0.00 32.17 2.69
1545 1568 9.862585 GTCTTAAACCAAATGTAGCAAATTTTG 57.137 29.630 4.72 4.72 0.00 2.44
1546 1569 9.606631 TGTCTTAAACCAAATGTAGCAAATTTT 57.393 25.926 0.00 0.00 0.00 1.82
1547 1570 9.606631 TTGTCTTAAACCAAATGTAGCAAATTT 57.393 25.926 0.00 0.00 0.00 1.82
1548 1571 9.260002 CTTGTCTTAAACCAAATGTAGCAAATT 57.740 29.630 0.00 0.00 0.00 1.82
1549 1572 8.421002 ACTTGTCTTAAACCAAATGTAGCAAAT 58.579 29.630 0.00 0.00 0.00 2.32
1550 1573 7.777095 ACTTGTCTTAAACCAAATGTAGCAAA 58.223 30.769 0.00 0.00 0.00 3.68
1551 1574 7.284489 AGACTTGTCTTAAACCAAATGTAGCAA 59.716 33.333 0.00 0.00 0.00 3.91
1552 1575 6.770785 AGACTTGTCTTAAACCAAATGTAGCA 59.229 34.615 0.00 0.00 0.00 3.49
1553 1576 7.203255 AGACTTGTCTTAAACCAAATGTAGC 57.797 36.000 0.00 0.00 0.00 3.58
1554 1577 8.621286 ACAAGACTTGTCTTAAACCAAATGTAG 58.379 33.333 15.23 2.41 40.56 2.74
1555 1578 8.514330 ACAAGACTTGTCTTAAACCAAATGTA 57.486 30.769 15.23 0.00 40.56 2.29
1556 1579 7.404671 ACAAGACTTGTCTTAAACCAAATGT 57.595 32.000 15.23 4.79 40.56 2.71
1557 1580 9.398170 CATACAAGACTTGTCTTAAACCAAATG 57.602 33.333 23.79 13.55 44.12 2.32
1558 1581 9.131791 ACATACAAGACTTGTCTTAAACCAAAT 57.868 29.630 23.79 5.68 44.12 2.32
1562 1585 8.923683 GTCTACATACAAGACTTGTCTTAAACC 58.076 37.037 23.79 5.98 44.12 3.27
1580 1607 9.108111 TCCCTCCTTTTCTTTTTAGTCTACATA 57.892 33.333 0.00 0.00 0.00 2.29
1584 1611 6.043938 TGCTCCCTCCTTTTCTTTTTAGTCTA 59.956 38.462 0.00 0.00 0.00 2.59
1592 1619 2.489802 CCAGTGCTCCCTCCTTTTCTTT 60.490 50.000 0.00 0.00 0.00 2.52
1595 1622 0.402121 ACCAGTGCTCCCTCCTTTTC 59.598 55.000 0.00 0.00 0.00 2.29
1597 1624 1.972588 ATACCAGTGCTCCCTCCTTT 58.027 50.000 0.00 0.00 0.00 3.11
1602 1629 4.969359 ACAAAGTATATACCAGTGCTCCCT 59.031 41.667 9.32 0.00 0.00 4.20
1605 1632 6.806751 TCAGACAAAGTATATACCAGTGCTC 58.193 40.000 9.32 6.10 0.00 4.26
1606 1633 6.791867 TCAGACAAAGTATATACCAGTGCT 57.208 37.500 9.32 0.02 0.00 4.40
1608 1635 9.770097 ATTCATCAGACAAAGTATATACCAGTG 57.230 33.333 9.32 7.69 0.00 3.66
1620 1648 9.770503 CAGAGAAAATACATTCATCAGACAAAG 57.229 33.333 0.00 0.00 0.00 2.77
1672 1729 3.999663 AGAGTCAGTAAAGAAGCATGTGC 59.000 43.478 0.00 0.00 42.49 4.57
1673 1730 4.142945 GCAGAGTCAGTAAAGAAGCATGTG 60.143 45.833 0.00 0.00 0.00 3.21
1674 1731 3.999663 GCAGAGTCAGTAAAGAAGCATGT 59.000 43.478 0.00 0.00 0.00 3.21
1675 1732 3.999001 TGCAGAGTCAGTAAAGAAGCATG 59.001 43.478 0.00 0.00 0.00 4.06
1676 1733 4.277515 TGCAGAGTCAGTAAAGAAGCAT 57.722 40.909 0.00 0.00 0.00 3.79
1677 1734 3.751479 TGCAGAGTCAGTAAAGAAGCA 57.249 42.857 0.00 0.00 0.00 3.91
1678 1735 5.619625 AAATGCAGAGTCAGTAAAGAAGC 57.380 39.130 0.00 0.00 0.00 3.86
1719 1776 4.572389 GCAGTGGTAATACAGATCACCAAG 59.428 45.833 2.13 0.81 42.48 3.61
1750 1807 1.803334 TCATCGTAGTGGTTGGTTGC 58.197 50.000 0.00 0.00 0.00 4.17
1777 1834 7.448161 TGTTCTCTTTGATTGGAACATGTACAT 59.552 33.333 1.41 1.41 41.68 2.29
1796 1853 3.620488 TGTTTTGGTTGCTCTGTTCTCT 58.380 40.909 0.00 0.00 0.00 3.10
1797 1854 3.627577 TCTGTTTTGGTTGCTCTGTTCTC 59.372 43.478 0.00 0.00 0.00 2.87
1798 1855 3.620488 TCTGTTTTGGTTGCTCTGTTCT 58.380 40.909 0.00 0.00 0.00 3.01
1799 1856 3.243201 CCTCTGTTTTGGTTGCTCTGTTC 60.243 47.826 0.00 0.00 0.00 3.18
1800 1857 2.689983 CCTCTGTTTTGGTTGCTCTGTT 59.310 45.455 0.00 0.00 0.00 3.16
1801 1858 2.301346 CCTCTGTTTTGGTTGCTCTGT 58.699 47.619 0.00 0.00 0.00 3.41
1802 1859 1.000938 GCCTCTGTTTTGGTTGCTCTG 60.001 52.381 0.00 0.00 0.00 3.35
1803 1860 1.322442 GCCTCTGTTTTGGTTGCTCT 58.678 50.000 0.00 0.00 0.00 4.09
1804 1861 1.032014 TGCCTCTGTTTTGGTTGCTC 58.968 50.000 0.00 0.00 0.00 4.26
1805 1862 0.746659 GTGCCTCTGTTTTGGTTGCT 59.253 50.000 0.00 0.00 0.00 3.91
1806 1863 0.459489 TGTGCCTCTGTTTTGGTTGC 59.541 50.000 0.00 0.00 0.00 4.17
1807 1864 2.166254 AGTTGTGCCTCTGTTTTGGTTG 59.834 45.455 0.00 0.00 0.00 3.77
1808 1865 2.456577 AGTTGTGCCTCTGTTTTGGTT 58.543 42.857 0.00 0.00 0.00 3.67
1809 1866 2.143876 AGTTGTGCCTCTGTTTTGGT 57.856 45.000 0.00 0.00 0.00 3.67
1810 1867 2.813061 CAAGTTGTGCCTCTGTTTTGG 58.187 47.619 0.00 0.00 0.00 3.28
1884 1941 5.975693 ATGAGTATCCTAGCTAGCTTCAC 57.024 43.478 24.88 13.22 0.00 3.18
1946 2003 4.142026 GGGGTGTTTTGCATATTTAGGGAC 60.142 45.833 0.00 0.00 0.00 4.46
1962 2019 2.900106 GCAGAGCAGAGGGGGTGTT 61.900 63.158 0.00 0.00 0.00 3.32
2027 2084 1.474855 GCAGCATTTGGGTGGTTTTGT 60.475 47.619 0.00 0.00 45.14 2.83
2089 2146 1.604693 CGTTGGGTAGTGTGAGGTGTC 60.605 57.143 0.00 0.00 0.00 3.67
2111 2168 0.678684 TCGTGCCGGAGTAGATGTCA 60.679 55.000 5.05 0.00 0.00 3.58
2123 2180 2.463620 CCCACATGATGTCGTGCCG 61.464 63.158 0.00 0.00 36.36 5.69
2129 2186 1.208535 TCCGGTAACCCACATGATGTC 59.791 52.381 0.00 0.00 0.00 3.06
2130 2187 1.281419 TCCGGTAACCCACATGATGT 58.719 50.000 0.00 0.00 0.00 3.06
2135 2192 1.226262 GCCATCCGGTAACCCACAT 59.774 57.895 0.00 0.00 33.28 3.21
2156 2213 3.066814 GACCAGACGTACCGGCCT 61.067 66.667 0.00 0.00 34.11 5.19
2159 2216 0.677731 TACCAGACCAGACGTACCGG 60.678 60.000 0.00 0.00 0.00 5.28
2174 2231 0.736636 CGTAGATGCAGACGGTACCA 59.263 55.000 13.54 0.00 35.43 3.25
2182 2239 2.048312 CTCGCCGTCGTAGATGCAGA 62.048 60.000 0.00 0.00 43.31 4.26
2183 2240 1.655654 CTCGCCGTCGTAGATGCAG 60.656 63.158 0.00 0.00 43.31 4.41
2246 2303 2.017782 TCGTAGACAGCTCCTGATGAC 58.982 52.381 0.00 0.00 35.18 3.06
2252 2309 1.729470 CGCCATCGTAGACAGCTCCT 61.729 60.000 0.00 0.00 42.51 3.69
2267 2324 3.006756 GCCAGCAGAGTACTCGCCA 62.007 63.158 25.65 0.00 32.42 5.69
2270 2327 1.095600 TGTAGCCAGCAGAGTACTCG 58.904 55.000 17.07 12.80 34.09 4.18
2273 2330 1.757118 TCCATGTAGCCAGCAGAGTAC 59.243 52.381 0.00 0.00 0.00 2.73
2279 2336 2.290287 ACCGTCCATGTAGCCAGCA 61.290 57.895 0.00 0.00 0.00 4.41
2282 2339 0.249120 CTTCACCGTCCATGTAGCCA 59.751 55.000 0.00 0.00 0.00 4.75
2285 2342 2.028476 TGTTCCTTCACCGTCCATGTAG 60.028 50.000 0.00 0.00 0.00 2.74
2294 2351 0.790207 CGACATGTGTTCCTTCACCG 59.210 55.000 1.15 0.00 37.51 4.94
2315 2372 3.841255 CCTTGTAGGAAGAAGAGGAGGTT 59.159 47.826 0.00 0.00 37.67 3.50
2370 2427 0.537828 TTGGGGTACGTTTGGAAGCC 60.538 55.000 0.00 0.00 0.00 4.35
2373 2430 0.534652 CCGTTGGGGTACGTTTGGAA 60.535 55.000 0.00 0.00 39.81 3.53
2378 2435 1.114722 TGTCTCCGTTGGGGTACGTT 61.115 55.000 0.00 0.00 39.81 3.99
2390 2447 0.815734 AACCGAGGTATGTGTCTCCG 59.184 55.000 0.00 0.00 0.00 4.63
2406 2463 3.608432 GCCTTGAGCCCATGAACC 58.392 61.111 0.00 0.00 34.35 3.62
2457 2514 2.815647 GTAGGTGCTGCGGTCTGC 60.816 66.667 0.00 0.00 46.70 4.26
2480 2537 0.527113 TGGTGCCATTTCTCATTGCG 59.473 50.000 0.00 0.00 0.00 4.85
2558 2615 2.100797 CCATGCATTGTGTCGCCG 59.899 61.111 0.00 0.00 0.00 6.46
2560 2617 0.098728 GTACCCATGCATTGTGTCGC 59.901 55.000 0.00 0.00 0.00 5.19
2562 2619 0.732571 CCGTACCCATGCATTGTGTC 59.267 55.000 0.00 0.00 0.00 3.67
2567 2624 1.917872 ACAAACCGTACCCATGCATT 58.082 45.000 0.00 0.00 0.00 3.56
2582 2639 0.032403 CGTCCTCCCACGTGTACAAA 59.968 55.000 15.65 0.00 34.95 2.83
2598 2655 1.885233 GCCTAGATAGTACCCACCGTC 59.115 57.143 0.00 0.00 0.00 4.79
2663 2720 3.259832 GAGGACTCCGCGAGATTTC 57.740 57.895 8.23 2.95 33.32 2.17
2741 2798 4.160642 AGAGGAGCATTGCATGACATTA 57.839 40.909 11.91 0.00 0.00 1.90
2791 2848 1.987855 CTAGCACCCCCTCGGTTCA 60.988 63.158 0.00 0.00 45.36 3.18
2800 2857 3.904339 TCTTCTGGATAATCTAGCACCCC 59.096 47.826 0.00 0.00 0.00 4.95
2865 2922 0.037882 CTCCAGCGTCTCTGCAAAGA 60.038 55.000 0.00 0.00 41.50 2.52
2877 2934 2.191513 CCATCCCAATGCTCCAGCG 61.192 63.158 0.00 0.00 45.83 5.18
2878 2935 2.496291 GCCATCCCAATGCTCCAGC 61.496 63.158 0.00 0.00 42.50 4.85
2879 2936 0.475475 TAGCCATCCCAATGCTCCAG 59.525 55.000 0.00 0.00 0.00 3.86
2880 2937 0.925558 TTAGCCATCCCAATGCTCCA 59.074 50.000 0.00 0.00 0.00 3.86
2881 2938 1.683385 GTTTAGCCATCCCAATGCTCC 59.317 52.381 0.00 0.00 0.00 4.70
3032 3089 1.461888 CGACGTCTCGCATTTTTGGAC 60.462 52.381 14.70 0.00 31.91 4.02
3140 3197 2.620585 GGATTACCTGATTCCAAGCTGC 59.379 50.000 0.00 0.00 0.00 5.25
3160 3217 8.585018 TGATGATACCTTGTACTACATGTATGG 58.415 37.037 5.91 1.06 31.08 2.74
3196 3253 8.881262 AGAAGAAAGTCCTCTAAAAGGTATTGA 58.119 33.333 0.00 0.00 46.32 2.57
3198 3255 9.106977 AGAGAAGAAAGTCCTCTAAAAGGTATT 57.893 33.333 0.00 0.00 46.32 1.89
3294 3351 2.942376 TGCGCATGGATTAAAGGTAGTG 59.058 45.455 5.66 0.00 0.00 2.74
3545 3602 4.274602 TCCACTTAAAATCTACCGCACA 57.725 40.909 0.00 0.00 0.00 4.57
3546 3603 5.410439 TCTTTCCACTTAAAATCTACCGCAC 59.590 40.000 0.00 0.00 0.00 5.34
3668 3725 9.911138 GATAAGCCAAGTATAAGGAAGTACTAC 57.089 37.037 0.00 0.00 31.25 2.73
3778 3835 9.565090 TGAAATAGGACAAAATATCATGAGGAG 57.435 33.333 0.09 0.00 0.00 3.69
3888 3945 1.202222 GCATCACTTCCGCAAATGGAG 60.202 52.381 0.00 0.00 39.72 3.86
3948 4005 5.258622 CGGTCATCTTGCGATAAGAAAAAG 58.741 41.667 6.64 0.00 0.00 2.27
3954 4011 2.225068 ACCGGTCATCTTGCGATAAG 57.775 50.000 0.00 0.00 0.00 1.73
4005 4062 6.182507 TCAGTAAGTGGACACAATACCTTT 57.817 37.500 5.14 0.00 30.82 3.11
4340 4397 0.323629 CGCTGGAAGGTTTCACCCTA 59.676 55.000 0.00 0.00 39.75 3.53
4358 4415 6.598753 AATAATGTCATTACCTTTCGACCG 57.401 37.500 7.44 0.00 0.00 4.79
4558 4615 4.743493 ACATTAATTTGACCATCAACCGC 58.257 39.130 0.00 0.00 35.89 5.68
4727 4798 6.515272 ACATGTTTCCCATCACTACAAATC 57.485 37.500 0.00 0.00 0.00 2.17
4728 4799 6.721208 AGAACATGTTTCCCATCACTACAAAT 59.279 34.615 13.36 0.00 0.00 2.32
4876 4947 2.311463 CCTCCAAGAAGGCTCGAGATA 58.689 52.381 18.75 0.00 37.29 1.98
4888 4959 0.700564 AGCAAAGCATCCCTCCAAGA 59.299 50.000 0.00 0.00 0.00 3.02
5124 5195 7.297936 TCTGTAAGATTGGTCAGTTTGTCTA 57.702 36.000 0.00 0.00 38.67 2.59
5135 5206 5.803470 GCTTACCACCTTCTGTAAGATTGGT 60.803 44.000 12.27 12.91 46.36 3.67
5139 5210 4.532521 AGTGCTTACCACCTTCTGTAAGAT 59.467 41.667 12.27 0.00 44.31 2.40
5163 5234 2.030893 CCCGACGAAAATATGCATGCAT 60.031 45.455 33.92 33.92 40.19 3.96
5247 5318 5.911752 AGCAACAATTAACCAACACATTGA 58.088 33.333 0.00 0.00 38.15 2.57
5277 5348 5.568620 ATCTACATTAATCACCACCTCCC 57.431 43.478 0.00 0.00 0.00 4.30
5459 5530 1.180029 ATGAATGACCTTGCTGTGCC 58.820 50.000 0.00 0.00 0.00 5.01
5550 5621 3.067320 GGCAGCCTATCCAATTTGAGAAC 59.933 47.826 3.29 0.00 0.00 3.01
5551 5622 3.290710 GGCAGCCTATCCAATTTGAGAA 58.709 45.455 3.29 0.00 0.00 2.87
5606 5677 3.013219 GCCATCCTCTTCTTGTTTCTCC 58.987 50.000 0.00 0.00 0.00 3.71
5607 5678 3.679389 TGCCATCCTCTTCTTGTTTCTC 58.321 45.455 0.00 0.00 0.00 2.87
5642 5713 7.658261 TGTAGAGTACCACATCATATACTTGC 58.342 38.462 0.00 0.00 0.00 4.01
5795 5866 3.753272 CGGTGTGAATGAACTTGAGGAAT 59.247 43.478 0.00 0.00 0.00 3.01
5933 6004 8.407832 CCATTTCATACACATGTACATCAACAT 58.592 33.333 5.07 0.00 40.75 2.71
5955 6026 3.871594 GCATACAACGCTCTTAGTCCATT 59.128 43.478 0.00 0.00 0.00 3.16
6199 6271 2.440409 ACCTCATGGACTGATTGTTGC 58.560 47.619 0.00 0.00 37.04 4.17
6298 6370 3.262420 ACTTGTGGATTATCACTGACGC 58.738 45.455 0.00 0.00 38.40 5.19
6311 6384 1.968493 GCGATCCCCTATACTTGTGGA 59.032 52.381 0.00 0.00 0.00 4.02
6359 6432 7.312154 CCTTGTGTCGAATCAATAAATTTGGA 58.688 34.615 0.00 0.00 0.00 3.53
6664 6737 8.843262 CATTGATGAATTGGAGCTATTTCTGTA 58.157 33.333 0.00 0.00 0.00 2.74
6671 6744 8.701908 ACATTACATTGATGAATTGGAGCTAT 57.298 30.769 0.00 0.00 0.00 2.97
6733 6806 7.550196 ACAAAAGATGTCATGCAAGTTCTTTTT 59.450 29.630 18.26 8.01 39.75 1.94
6795 6868 6.858792 AAAGGAGGCCTTAATATCCCTTAA 57.141 37.500 17.50 0.00 43.92 1.85
6890 6963 3.263425 AGTGACAATAATCGGGACCACTT 59.737 43.478 0.00 0.00 30.42 3.16
7005 7078 4.883195 TCACACTATGAATGCCGCAGCA 62.883 50.000 0.00 0.00 43.04 4.41
7006 7079 0.028505 CACACTATGAATGCCGCAGC 59.971 55.000 0.00 0.00 40.48 5.25
7007 7080 1.596260 CTCACACTATGAATGCCGCAG 59.404 52.381 0.00 0.00 36.69 5.18
7008 7081 1.655484 CTCACACTATGAATGCCGCA 58.345 50.000 0.00 0.00 36.69 5.69
7009 7082 0.305922 GCTCACACTATGAATGCCGC 59.694 55.000 0.00 0.00 36.69 6.53
7010 7083 1.655484 TGCTCACACTATGAATGCCG 58.345 50.000 0.00 0.00 36.69 5.69
7011 7084 4.644103 AATTGCTCACACTATGAATGCC 57.356 40.909 0.00 0.00 36.69 4.40
7012 7085 4.802039 CCAAATTGCTCACACTATGAATGC 59.198 41.667 0.00 0.00 36.69 3.56
7013 7086 6.198650 TCCAAATTGCTCACACTATGAATG 57.801 37.500 0.00 0.00 36.69 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.