Multiple sequence alignment - TraesCS7D01G542400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G542400 chr7D 100.000 2339 0 0 1 2339 631474104 631471766 0 4320
1 TraesCS7D01G542400 chr7D 87.664 1370 160 8 1 1366 149106978 149105614 0 1585
2 TraesCS7D01G542400 chr7D 87.637 1367 161 7 1 1364 232924947 232926308 0 1581
3 TraesCS7D01G542400 chr7D 91.598 726 59 1 1616 2339 8548390 8547665 0 1002
4 TraesCS7D01G542400 chr7D 91.609 727 58 2 1616 2339 162007696 162006970 0 1002
5 TraesCS7D01G542400 chr5D 89.620 1368 133 9 1 1363 273068788 273067425 0 1731
6 TraesCS7D01G542400 chr5D 91.609 727 58 2 1616 2339 44577232 44576506 0 1002
7 TraesCS7D01G542400 chr3D 88.596 1368 145 8 1 1365 126363271 126364630 0 1652
8 TraesCS7D01G542400 chr3D 91.884 727 56 2 1616 2339 563585481 563584755 0 1013
9 TraesCS7D01G542400 chr3D 91.575 724 58 2 1616 2336 43518701 43519424 0 996
10 TraesCS7D01G542400 chr3D 91.472 727 59 2 1616 2339 571543059 571542333 0 996
11 TraesCS7D01G542400 chr6A 88.523 1368 148 8 1 1364 371337482 371338844 0 1648
12 TraesCS7D01G542400 chr3B 88.538 1361 146 10 2 1360 418735711 418734359 0 1640
13 TraesCS7D01G542400 chr1B 88.442 1367 148 9 1 1363 611789588 611790948 0 1640
14 TraesCS7D01G542400 chr2D 87.783 1367 161 6 1 1365 104915585 104916947 0 1594
15 TraesCS7D01G542400 chr2D 87.792 1368 159 7 1 1364 273017911 273019274 0 1594
16 TraesCS7D01G542400 chr2A 91.918 730 56 2 1610 2336 19886696 19887425 0 1018
17 TraesCS7D01G542400 chr1D 91.884 727 56 2 1616 2339 427878408 427877682 0 1013
18 TraesCS7D01G542400 chr6D 91.609 727 58 2 1616 2339 16698054 16697328 0 1002


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G542400 chr7D 631471766 631474104 2338 True 4320 4320 100.000 1 2339 1 chr7D.!!$R4 2338
1 TraesCS7D01G542400 chr7D 149105614 149106978 1364 True 1585 1585 87.664 1 1366 1 chr7D.!!$R2 1365
2 TraesCS7D01G542400 chr7D 232924947 232926308 1361 False 1581 1581 87.637 1 1364 1 chr7D.!!$F1 1363
3 TraesCS7D01G542400 chr7D 8547665 8548390 725 True 1002 1002 91.598 1616 2339 1 chr7D.!!$R1 723
4 TraesCS7D01G542400 chr7D 162006970 162007696 726 True 1002 1002 91.609 1616 2339 1 chr7D.!!$R3 723
5 TraesCS7D01G542400 chr5D 273067425 273068788 1363 True 1731 1731 89.620 1 1363 1 chr5D.!!$R2 1362
6 TraesCS7D01G542400 chr5D 44576506 44577232 726 True 1002 1002 91.609 1616 2339 1 chr5D.!!$R1 723
7 TraesCS7D01G542400 chr3D 126363271 126364630 1359 False 1652 1652 88.596 1 1365 1 chr3D.!!$F2 1364
8 TraesCS7D01G542400 chr3D 563584755 563585481 726 True 1013 1013 91.884 1616 2339 1 chr3D.!!$R1 723
9 TraesCS7D01G542400 chr3D 43518701 43519424 723 False 996 996 91.575 1616 2336 1 chr3D.!!$F1 720
10 TraesCS7D01G542400 chr3D 571542333 571543059 726 True 996 996 91.472 1616 2339 1 chr3D.!!$R2 723
11 TraesCS7D01G542400 chr6A 371337482 371338844 1362 False 1648 1648 88.523 1 1364 1 chr6A.!!$F1 1363
12 TraesCS7D01G542400 chr3B 418734359 418735711 1352 True 1640 1640 88.538 2 1360 1 chr3B.!!$R1 1358
13 TraesCS7D01G542400 chr1B 611789588 611790948 1360 False 1640 1640 88.442 1 1363 1 chr1B.!!$F1 1362
14 TraesCS7D01G542400 chr2D 104915585 104916947 1362 False 1594 1594 87.783 1 1365 1 chr2D.!!$F1 1364
15 TraesCS7D01G542400 chr2D 273017911 273019274 1363 False 1594 1594 87.792 1 1364 1 chr2D.!!$F2 1363
16 TraesCS7D01G542400 chr2A 19886696 19887425 729 False 1018 1018 91.918 1610 2336 1 chr2A.!!$F1 726
17 TraesCS7D01G542400 chr1D 427877682 427878408 726 True 1013 1013 91.884 1616 2339 1 chr1D.!!$R1 723
18 TraesCS7D01G542400 chr6D 16697328 16698054 726 True 1002 1002 91.609 1616 2339 1 chr6D.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
185 188 0.100503 GGCCCATTGACGCACAATAC 59.899 55.0 7.85 2.65 46.01 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1458 0.111446 TCCATGTGAAAAGCCCGGAA 59.889 50.0 0.73 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.924111 ACACAACATCAATATTTGGGAAGAC 58.076 36.000 0.00 0.00 0.00 3.01
62 63 1.185315 CCCAAATTGTGCCACTAGGG 58.815 55.000 0.00 0.00 40.85 3.53
70 71 1.340017 TGTGCCACTAGGGAAGATTGC 60.340 52.381 0.00 0.00 36.80 3.56
71 72 0.255890 TGCCACTAGGGAAGATTGCC 59.744 55.000 0.00 0.00 40.01 4.52
134 137 2.773993 TTGACCCGACCTCCAATAAC 57.226 50.000 0.00 0.00 0.00 1.89
136 139 3.104519 TGACCCGACCTCCAATAACTA 57.895 47.619 0.00 0.00 0.00 2.24
147 150 5.151454 CCTCCAATAACTAGGATGAGGACT 58.849 45.833 0.00 0.00 32.53 3.85
149 152 6.239458 CCTCCAATAACTAGGATGAGGACTTC 60.239 46.154 0.00 0.00 32.53 3.01
156 159 7.979786 AACTAGGATGAGGACTTCATTAGAA 57.020 36.000 11.33 0.00 46.51 2.10
185 188 0.100503 GGCCCATTGACGCACAATAC 59.899 55.000 7.85 2.65 46.01 1.89
202 205 6.311200 GCACAATACATTCTTTCAATCCCAAC 59.689 38.462 0.00 0.00 0.00 3.77
224 227 6.589830 ACTTCGCAACATAATATGACAGAC 57.410 37.500 7.33 0.00 0.00 3.51
241 244 2.941720 CAGACTTTATTGCCTGGAGCTC 59.058 50.000 4.71 4.71 44.23 4.09
305 308 5.665360 TGTGGAGTGGAATTATCAGTATGGA 59.335 40.000 0.00 0.00 36.16 3.41
311 314 9.482627 GAGTGGAATTATCAGTATGGAAGTAAG 57.517 37.037 0.00 0.00 36.16 2.34
357 360 3.118665 GCGAACCACACCTAACCCTATAA 60.119 47.826 0.00 0.00 0.00 0.98
387 390 6.549736 TCAGATATGGAAGTTATCTTGTCCGA 59.450 38.462 0.00 0.00 34.85 4.55
398 401 6.710744 AGTTATCTTGTCCGACAAAAGTCAAT 59.289 34.615 14.74 5.24 37.69 2.57
403 409 6.750039 TCTTGTCCGACAAAAGTCAATTTTTC 59.250 34.615 14.74 0.00 39.11 2.29
442 450 1.450312 CACTCTTCCATGTCGGGCC 60.450 63.158 0.00 0.00 34.36 5.80
445 453 2.438434 CTTCCATGTCGGGCCACC 60.438 66.667 4.39 0.00 34.36 4.61
460 468 1.212935 GCCACCCTCACCAATAGACAT 59.787 52.381 0.00 0.00 0.00 3.06
483 491 1.915769 AGGTCTCGCCTCTTTGCCT 60.916 57.895 0.00 0.00 46.96 4.75
490 498 0.321653 CGCCTCTTTGCCTTACCTGT 60.322 55.000 0.00 0.00 0.00 4.00
533 541 4.911610 CGAAACACTTGCTTTTCCTATGTG 59.088 41.667 0.00 0.00 0.00 3.21
547 555 3.894427 TCCTATGTGCAAAAGCAAAGGAA 59.106 39.130 12.35 1.51 0.00 3.36
550 558 4.935352 ATGTGCAAAAGCAAAGGAAGTA 57.065 36.364 0.00 0.00 0.00 2.24
560 568 4.740902 AGCAAAGGAAGTATGGAAAAGGT 58.259 39.130 0.00 0.00 0.00 3.50
573 581 2.959030 GGAAAAGGTTAGGGATGGATGC 59.041 50.000 0.00 0.00 0.00 3.91
653 661 7.403231 ACCTTTTACTCCTTCCAGATCAAGATA 59.597 37.037 0.00 0.00 0.00 1.98
762 770 7.147312 CACAAGGAATTAACTCAGAATGCAAA 58.853 34.615 0.00 0.00 34.76 3.68
876 886 0.458669 CTAGGGGCTTCGCGAAACTA 59.541 55.000 23.54 19.02 0.00 2.24
918 928 3.073798 ACCATGACATGTTGAAGGGTACA 59.926 43.478 14.26 0.00 0.00 2.90
924 935 1.917872 TGTTGAAGGGTACAATGGGC 58.082 50.000 0.00 0.00 0.00 5.36
927 938 2.437716 AAGGGTACAATGGGCGCG 60.438 61.111 0.00 0.00 0.00 6.86
939 950 2.496817 GGCGCGGTCTTGAGAGAT 59.503 61.111 8.83 0.00 33.70 2.75
992 1004 2.337749 AAGATCGACTACTGCGCGGG 62.338 60.000 22.44 10.07 0.00 6.13
996 1008 2.506438 GACTACTGCGCGGGTGTC 60.506 66.667 22.44 22.07 0.00 3.67
1034 1046 4.578105 CCTAGCTCTCAAATTTGGCCTAAG 59.422 45.833 17.90 7.80 0.00 2.18
1128 1140 3.775654 GGAGGACAGTCAGCGGGG 61.776 72.222 2.17 0.00 0.00 5.73
1129 1141 2.680352 GAGGACAGTCAGCGGGGA 60.680 66.667 2.17 0.00 0.00 4.81
1171 1183 5.789643 TGACTGCTATCACTATGCATGTA 57.210 39.130 10.16 0.00 36.07 2.29
1263 1275 9.389755 AGATTAGCTAGATTTTCTTCAACTTCC 57.610 33.333 0.00 0.00 0.00 3.46
1318 1330 6.756542 TGTAATGATCCTCACAAACGATGTAG 59.243 38.462 0.00 0.00 41.46 2.74
1381 1393 1.739067 AAACTGGCCTATTCACTCGC 58.261 50.000 3.32 0.00 0.00 5.03
1382 1394 0.905357 AACTGGCCTATTCACTCGCT 59.095 50.000 3.32 0.00 0.00 4.93
1383 1395 0.176680 ACTGGCCTATTCACTCGCTG 59.823 55.000 3.32 0.00 0.00 5.18
1384 1396 0.176680 CTGGCCTATTCACTCGCTGT 59.823 55.000 3.32 0.00 0.00 4.40
1396 1408 3.951979 ACTCGCTGTGAAACTTTCTTG 57.048 42.857 3.22 0.00 38.04 3.02
1397 1409 2.614057 ACTCGCTGTGAAACTTTCTTGG 59.386 45.455 3.22 0.00 38.04 3.61
1398 1410 2.872245 CTCGCTGTGAAACTTTCTTGGA 59.128 45.455 3.22 0.00 38.04 3.53
1399 1411 3.275143 TCGCTGTGAAACTTTCTTGGAA 58.725 40.909 3.22 0.00 38.04 3.53
1400 1412 3.882888 TCGCTGTGAAACTTTCTTGGAAT 59.117 39.130 3.22 0.00 38.04 3.01
1401 1413 5.060506 TCGCTGTGAAACTTTCTTGGAATA 58.939 37.500 3.22 0.00 38.04 1.75
1402 1414 5.529430 TCGCTGTGAAACTTTCTTGGAATAA 59.471 36.000 3.22 0.00 38.04 1.40
1403 1415 6.038825 TCGCTGTGAAACTTTCTTGGAATAAA 59.961 34.615 3.22 0.00 38.04 1.40
1404 1416 6.863126 CGCTGTGAAACTTTCTTGGAATAAAT 59.137 34.615 3.22 0.00 38.04 1.40
1405 1417 7.061094 CGCTGTGAAACTTTCTTGGAATAAATC 59.939 37.037 3.22 0.00 38.04 2.17
1406 1418 8.084684 GCTGTGAAACTTTCTTGGAATAAATCT 58.915 33.333 3.22 0.00 38.04 2.40
1433 1445 7.090953 ACTACAGTATAGAAGAAGCACTGTC 57.909 40.000 8.79 0.00 44.90 3.51
1434 1446 5.331876 ACAGTATAGAAGAAGCACTGTCC 57.668 43.478 0.03 0.00 44.90 4.02
1435 1447 4.772624 ACAGTATAGAAGAAGCACTGTCCA 59.227 41.667 0.03 0.00 44.90 4.02
1436 1448 5.105554 ACAGTATAGAAGAAGCACTGTCCAG 60.106 44.000 0.03 0.00 44.90 3.86
1437 1449 2.751166 TAGAAGAAGCACTGTCCAGC 57.249 50.000 0.00 0.00 0.00 4.85
1438 1450 0.761187 AGAAGAAGCACTGTCCAGCA 59.239 50.000 0.00 0.00 0.00 4.41
1448 1460 2.985406 CTGTCCAGCAGCTTTCTTTC 57.015 50.000 0.00 0.00 38.52 2.62
1449 1461 1.538950 CTGTCCAGCAGCTTTCTTTCC 59.461 52.381 0.00 0.00 38.52 3.13
1450 1462 0.519077 GTCCAGCAGCTTTCTTTCCG 59.481 55.000 0.00 0.00 0.00 4.30
1451 1463 0.606401 TCCAGCAGCTTTCTTTCCGG 60.606 55.000 0.00 0.00 0.00 5.14
1452 1464 1.589716 CCAGCAGCTTTCTTTCCGGG 61.590 60.000 0.00 0.00 0.00 5.73
1453 1465 1.973812 AGCAGCTTTCTTTCCGGGC 60.974 57.895 0.00 0.00 0.00 6.13
1454 1466 1.973812 GCAGCTTTCTTTCCGGGCT 60.974 57.895 0.00 0.00 0.00 5.19
1455 1467 1.527433 GCAGCTTTCTTTCCGGGCTT 61.527 55.000 0.00 0.00 0.00 4.35
1456 1468 0.961753 CAGCTTTCTTTCCGGGCTTT 59.038 50.000 0.00 0.00 0.00 3.51
1457 1469 1.341209 CAGCTTTCTTTCCGGGCTTTT 59.659 47.619 0.00 0.00 0.00 2.27
1458 1470 1.613925 AGCTTTCTTTCCGGGCTTTTC 59.386 47.619 0.00 0.00 0.00 2.29
1459 1471 1.339929 GCTTTCTTTCCGGGCTTTTCA 59.660 47.619 0.00 0.00 0.00 2.69
1460 1472 2.862530 GCTTTCTTTCCGGGCTTTTCAC 60.863 50.000 0.00 0.00 0.00 3.18
1461 1473 2.060050 TTCTTTCCGGGCTTTTCACA 57.940 45.000 0.00 0.00 0.00 3.58
1462 1474 2.286365 TCTTTCCGGGCTTTTCACAT 57.714 45.000 0.00 0.00 0.00 3.21
1463 1475 1.885887 TCTTTCCGGGCTTTTCACATG 59.114 47.619 0.00 0.00 0.00 3.21
1464 1476 0.965439 TTTCCGGGCTTTTCACATGG 59.035 50.000 0.00 0.00 0.00 3.66
1465 1477 0.111446 TTCCGGGCTTTTCACATGGA 59.889 50.000 0.00 0.00 0.00 3.41
1466 1478 0.111446 TCCGGGCTTTTCACATGGAA 59.889 50.000 0.00 0.00 0.00 3.53
1467 1479 1.185315 CCGGGCTTTTCACATGGAAT 58.815 50.000 0.00 0.00 34.91 3.01
1480 1492 2.273538 ATGGAATGATGCTCTGAGGC 57.726 50.000 6.83 0.00 0.00 4.70
1481 1493 0.913924 TGGAATGATGCTCTGAGGCA 59.086 50.000 6.83 5.59 46.63 4.75
1489 1501 2.975732 TGCTCTGAGGCATAGTGAAG 57.024 50.000 6.83 0.00 37.29 3.02
1490 1502 2.460669 TGCTCTGAGGCATAGTGAAGA 58.539 47.619 6.83 0.00 37.29 2.87
1491 1503 2.833943 TGCTCTGAGGCATAGTGAAGAA 59.166 45.455 6.83 0.00 37.29 2.52
1492 1504 3.194062 GCTCTGAGGCATAGTGAAGAAC 58.806 50.000 6.83 0.00 0.00 3.01
1493 1505 3.368843 GCTCTGAGGCATAGTGAAGAACA 60.369 47.826 6.83 0.00 0.00 3.18
1494 1506 7.806695 TGCTCTGAGGCATAGTGAAGAACAC 62.807 48.000 6.83 0.00 42.17 3.32
1542 1554 5.869649 AAAAACACCTTAGCATGGAAACT 57.130 34.783 0.00 0.00 0.00 2.66
1543 1555 6.969993 AAAAACACCTTAGCATGGAAACTA 57.030 33.333 0.00 0.00 0.00 2.24
1544 1556 5.959618 AAACACCTTAGCATGGAAACTAC 57.040 39.130 0.00 0.00 0.00 2.73
1545 1557 4.910458 ACACCTTAGCATGGAAACTACT 57.090 40.909 0.00 0.00 0.00 2.57
1546 1558 5.242795 ACACCTTAGCATGGAAACTACTT 57.757 39.130 0.00 0.00 0.00 2.24
1547 1559 6.368779 ACACCTTAGCATGGAAACTACTTA 57.631 37.500 0.00 0.00 0.00 2.24
1548 1560 6.775708 ACACCTTAGCATGGAAACTACTTAA 58.224 36.000 0.00 0.00 0.00 1.85
1549 1561 7.228590 ACACCTTAGCATGGAAACTACTTAAA 58.771 34.615 0.00 0.00 0.00 1.52
1550 1562 7.888546 ACACCTTAGCATGGAAACTACTTAAAT 59.111 33.333 0.00 0.00 0.00 1.40
1551 1563 8.184192 CACCTTAGCATGGAAACTACTTAAATG 58.816 37.037 0.00 0.00 0.00 2.32
1552 1564 7.888546 ACCTTAGCATGGAAACTACTTAAATGT 59.111 33.333 0.00 0.00 0.00 2.71
1553 1565 8.739972 CCTTAGCATGGAAACTACTTAAATGTT 58.260 33.333 0.00 0.00 0.00 2.71
1557 1569 8.088365 AGCATGGAAACTACTTAAATGTTTTCC 58.912 33.333 0.00 4.31 34.55 3.13
1558 1570 7.330946 GCATGGAAACTACTTAAATGTTTTCCC 59.669 37.037 8.12 6.93 34.55 3.97
1559 1571 8.585018 CATGGAAACTACTTAAATGTTTTCCCT 58.415 33.333 8.12 0.00 34.55 4.20
1560 1572 9.816787 ATGGAAACTACTTAAATGTTTTCCCTA 57.183 29.630 8.12 0.00 34.55 3.53
1561 1573 9.816787 TGGAAACTACTTAAATGTTTTCCCTAT 57.183 29.630 8.12 0.00 34.55 2.57
1565 1577 7.982224 ACTACTTAAATGTTTTCCCTATTCGC 58.018 34.615 0.00 0.00 0.00 4.70
1566 1578 6.827586 ACTTAAATGTTTTCCCTATTCGCA 57.172 33.333 0.00 0.00 0.00 5.10
1567 1579 7.404671 ACTTAAATGTTTTCCCTATTCGCAT 57.595 32.000 0.00 0.00 0.00 4.73
1568 1580 7.836842 ACTTAAATGTTTTCCCTATTCGCATT 58.163 30.769 0.00 0.00 0.00 3.56
1569 1581 8.962679 ACTTAAATGTTTTCCCTATTCGCATTA 58.037 29.630 0.00 0.00 0.00 1.90
1570 1582 9.796120 CTTAAATGTTTTCCCTATTCGCATTAA 57.204 29.630 0.00 0.00 0.00 1.40
1604 1616 8.127954 TGTTTTTAGGCATTTTGATGAAAAAGC 58.872 29.630 8.78 8.78 42.44 3.51
1609 1621 5.866335 GCATTTTGATGAAAAAGCCATGA 57.134 34.783 6.35 0.00 41.00 3.07
1610 1622 6.243811 GCATTTTGATGAAAAAGCCATGAA 57.756 33.333 6.35 0.00 41.00 2.57
1611 1623 6.848451 GCATTTTGATGAAAAAGCCATGAAT 58.152 32.000 6.35 0.00 41.00 2.57
1612 1624 7.976826 GCATTTTGATGAAAAAGCCATGAATA 58.023 30.769 6.35 0.00 41.00 1.75
1613 1625 8.617809 GCATTTTGATGAAAAAGCCATGAATAT 58.382 29.630 6.35 0.00 41.00 1.28
1653 1665 3.760035 AGGCGCATCCTCGTCGTT 61.760 61.111 10.83 0.00 43.20 3.85
1673 1685 1.137513 CGAGTCGGCGAAGTTCTTTT 58.862 50.000 12.92 0.00 0.00 2.27
1695 1708 1.466851 GCCAAGTGCTGCTTCCCTTT 61.467 55.000 0.00 0.00 34.69 3.11
1738 1753 2.029020 GGATCCGCCTTGCTTTTCTTTT 60.029 45.455 0.00 0.00 0.00 2.27
1741 1756 2.627699 TCCGCCTTGCTTTTCTTTTGAT 59.372 40.909 0.00 0.00 0.00 2.57
1742 1757 3.069443 TCCGCCTTGCTTTTCTTTTGATT 59.931 39.130 0.00 0.00 0.00 2.57
1765 1780 0.171007 CGATCCATTGCGCCTTTGTT 59.829 50.000 4.18 0.00 0.00 2.83
1792 1807 1.368950 GTGCTCACTCACCTCAGCA 59.631 57.895 0.00 0.00 39.58 4.41
1796 1811 0.529833 CTCACTCACCTCAGCATCGT 59.470 55.000 0.00 0.00 0.00 3.73
1809 1824 1.269723 AGCATCGTCGAAACTGAGACA 59.730 47.619 0.00 0.00 37.23 3.41
1937 1952 1.885850 ACGGAGCGCAAAAGTCGTT 60.886 52.632 11.47 0.00 0.00 3.85
1990 2005 2.387445 GCTGCGTATGCCGTTGACA 61.387 57.895 4.05 0.00 41.78 3.58
2020 2035 3.864686 CGGGCGGCAAACTGATCG 61.865 66.667 12.47 0.00 0.00 3.69
2065 2080 1.135915 AGGCACTCGTAGCTTCTCATG 59.864 52.381 0.00 0.00 0.00 3.07
2089 2104 2.576615 GACTGAAGGTGTGCTTCCTTT 58.423 47.619 8.51 0.00 44.19 3.11
2095 2110 1.140252 AGGTGTGCTTCCTTTACACGT 59.860 47.619 0.00 0.00 44.17 4.49
2153 2168 1.608283 CCTCCTTCGCCGAGTTCTTTT 60.608 52.381 0.00 0.00 0.00 2.27
2210 2225 1.202382 AGTAGATCGCTGTTAACGCCC 60.202 52.381 14.03 6.49 0.00 6.13
2231 2246 0.677731 ACGATCCGTCCGGTACTTCA 60.678 55.000 0.00 0.00 33.69 3.02
2287 2302 1.817099 GGCATCCCAGAACTCAGCG 60.817 63.158 0.00 0.00 0.00 5.18
2293 2308 2.507992 CAGAACTCAGCGCCCTCG 60.508 66.667 2.29 0.00 39.07 4.63
2297 2312 2.284798 GAACTCAGCGCCCTCGATCA 62.285 60.000 2.29 0.00 38.10 2.92
2298 2313 1.888436 AACTCAGCGCCCTCGATCAA 61.888 55.000 2.29 0.00 38.10 2.57
2308 2323 2.598565 CCCTCGATCAAGACCTCCATA 58.401 52.381 0.00 0.00 0.00 2.74
2309 2324 2.965831 CCCTCGATCAAGACCTCCATAA 59.034 50.000 0.00 0.00 0.00 1.90
2316 2331 5.565637 CGATCAAGACCTCCATAATCATCGT 60.566 44.000 0.00 0.00 0.00 3.73
2331 2346 2.686405 TCATCGTCCATAGTGCGTAGTT 59.314 45.455 0.00 0.00 0.00 2.24
2336 2351 3.181499 CGTCCATAGTGCGTAGTTCTCTT 60.181 47.826 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.036737 GCGTCTTCCCAAATATTGATGTTG 58.963 41.667 0.00 0.00 0.00 3.33
34 35 0.457035 CACAATTTGGGATCCAGGCG 59.543 55.000 15.23 0.00 33.81 5.52
62 63 2.058593 CCTTAGGGGTGGCAATCTTC 57.941 55.000 0.00 0.00 0.00 2.87
134 137 9.103861 GTTTTTCTAATGAAGTCCTCATCCTAG 57.896 37.037 0.00 0.00 44.43 3.02
136 139 7.694093 AGTTTTTCTAATGAAGTCCTCATCCT 58.306 34.615 0.00 0.00 44.43 3.24
147 150 6.013379 TGGGCCACATAGTTTTTCTAATGAA 58.987 36.000 0.00 0.00 31.94 2.57
149 152 5.913137 TGGGCCACATAGTTTTTCTAATG 57.087 39.130 0.00 0.00 31.94 1.90
156 159 2.491693 CGTCAATGGGCCACATAGTTTT 59.508 45.455 9.28 0.00 39.40 2.43
183 186 5.106317 GCGAAGTTGGGATTGAAAGAATGTA 60.106 40.000 0.00 0.00 0.00 2.29
185 188 4.168760 GCGAAGTTGGGATTGAAAGAATG 58.831 43.478 0.00 0.00 0.00 2.67
202 205 6.834959 AGTCTGTCATATTATGTTGCGAAG 57.165 37.500 3.67 0.00 0.00 3.79
224 227 3.126831 CGTAGAGCTCCAGGCAATAAAG 58.873 50.000 10.93 0.00 44.79 1.85
241 244 5.579511 ACCGAGAACATACCATTTTTCGTAG 59.420 40.000 0.00 0.00 0.00 3.51
269 272 4.290093 TCCACTCCACATAGTAAGCAGAT 58.710 43.478 0.00 0.00 0.00 2.90
280 283 6.329986 TCCATACTGATAATTCCACTCCACAT 59.670 38.462 0.00 0.00 0.00 3.21
305 308 6.723977 TCCCATTGGAATGTTTTAGCTTACTT 59.276 34.615 3.62 0.00 37.86 2.24
311 314 4.443315 CCCATCCCATTGGAATGTTTTAGC 60.443 45.833 3.62 0.00 45.98 3.09
357 360 7.126421 ACAAGATAACTTCCATATCTGACACCT 59.874 37.037 0.00 0.00 39.46 4.00
387 390 6.423604 CCGCCATAAGAAAAATTGACTTTTGT 59.576 34.615 0.00 0.00 37.14 2.83
398 401 4.643463 TGTAGTGTCCGCCATAAGAAAAA 58.357 39.130 0.00 0.00 0.00 1.94
403 409 2.483876 CCATGTAGTGTCCGCCATAAG 58.516 52.381 0.00 0.00 0.00 1.73
442 450 5.551305 TCATATGTCTATTGGTGAGGGTG 57.449 43.478 1.90 0.00 0.00 4.61
445 453 6.042552 AGACCTTCATATGTCTATTGGTGAGG 59.957 42.308 1.90 0.00 39.96 3.86
451 459 4.926238 GGCGAGACCTTCATATGTCTATTG 59.074 45.833 1.90 0.00 41.74 1.90
475 483 4.008074 CTGAGAACAGGTAAGGCAAAGA 57.992 45.455 0.00 0.00 40.14 2.52
490 498 7.123098 TGTTTCGTATCTTATACACCCTGAGAA 59.877 37.037 0.00 0.00 0.00 2.87
503 511 6.708949 AGGAAAAGCAAGTGTTTCGTATCTTA 59.291 34.615 0.00 0.00 35.08 2.10
547 555 5.043762 TCCATCCCTAACCTTTTCCATACT 58.956 41.667 0.00 0.00 0.00 2.12
550 558 4.808042 CATCCATCCCTAACCTTTTCCAT 58.192 43.478 0.00 0.00 0.00 3.41
560 568 5.497464 TCAATAATCGCATCCATCCCTAA 57.503 39.130 0.00 0.00 0.00 2.69
573 581 9.378597 CAATCTCACAAGCTTTATCAATAATCG 57.621 33.333 0.00 0.00 0.00 3.34
653 661 6.786959 ACATTTTGGTACCCCATAATATGCAT 59.213 34.615 10.07 3.79 39.50 3.96
762 770 8.578593 AGCTATGATCCCCATTAATATCTGAT 57.421 34.615 0.00 0.00 36.71 2.90
771 779 8.860517 ATATGTAAGAGCTATGATCCCCATTA 57.139 34.615 0.00 0.00 36.71 1.90
803 812 5.240623 ACGCCTTTGAAGATGACACATTTAA 59.759 36.000 0.00 0.00 0.00 1.52
810 819 1.071542 TGGACGCCTTTGAAGATGACA 59.928 47.619 0.00 0.00 0.00 3.58
811 820 1.808411 TGGACGCCTTTGAAGATGAC 58.192 50.000 0.00 0.00 0.00 3.06
849 859 1.395826 CGAAGCCCCTAGGAGGACAG 61.396 65.000 11.48 0.00 37.67 3.51
876 886 4.142271 TGGTCAAAAGAAGCGTCAACATTT 60.142 37.500 1.61 0.00 0.00 2.32
888 898 6.461370 CCTTCAACATGTCATGGTCAAAAGAA 60.461 38.462 17.08 8.70 33.60 2.52
918 928 2.436646 CTCAAGACCGCGCCCATT 60.437 61.111 0.00 0.00 0.00 3.16
924 935 0.171231 TGTCATCTCTCAAGACCGCG 59.829 55.000 0.00 0.00 33.32 6.46
927 938 4.278975 ACCTTTGTCATCTCTCAAGACC 57.721 45.455 0.00 0.00 33.32 3.85
939 950 7.319052 TCCTACAATAAACCTACCTTTGTCA 57.681 36.000 0.00 0.00 33.03 3.58
992 1004 2.475666 GCTTCTGCCATGAGGACAC 58.524 57.895 0.00 0.00 36.89 3.67
1012 1024 5.189180 ACTTAGGCCAAATTTGAGAGCTAG 58.811 41.667 19.86 13.75 0.00 3.42
1034 1046 0.596082 TCTTGCCCTTTGCGCTAAAC 59.404 50.000 9.73 0.26 45.60 2.01
1128 1140 3.718480 GAAAATCGCCGCTGCCGTC 62.718 63.158 0.00 0.00 0.00 4.79
1129 1141 3.799755 GAAAATCGCCGCTGCCGT 61.800 61.111 0.00 0.00 0.00 5.68
1134 1146 0.460284 AGTCATCGAAAATCGCCGCT 60.460 50.000 0.00 0.00 40.21 5.52
1140 1152 7.621013 GCATAGTGATAGCAGTCATCGAAAATC 60.621 40.741 0.00 0.00 0.00 2.17
1365 1377 0.176680 ACAGCGAGTGAATAGGCCAG 59.823 55.000 5.01 0.00 0.00 4.85
1366 1378 2.286826 ACAGCGAGTGAATAGGCCA 58.713 52.632 5.01 0.00 0.00 5.36
1376 1388 2.614057 CCAAGAAAGTTTCACAGCGAGT 59.386 45.455 17.65 0.00 0.00 4.18
1377 1389 2.872245 TCCAAGAAAGTTTCACAGCGAG 59.128 45.455 17.65 0.00 0.00 5.03
1378 1390 2.912771 TCCAAGAAAGTTTCACAGCGA 58.087 42.857 17.65 3.16 0.00 4.93
1379 1391 3.691049 TTCCAAGAAAGTTTCACAGCG 57.309 42.857 17.65 1.39 0.00 5.18
1380 1392 8.084684 AGATTTATTCCAAGAAAGTTTCACAGC 58.915 33.333 17.65 0.00 0.00 4.40
1413 1425 5.330455 TGGACAGTGCTTCTTCTATACTG 57.670 43.478 0.00 0.00 43.20 2.74
1414 1426 4.142049 GCTGGACAGTGCTTCTTCTATACT 60.142 45.833 0.82 0.00 0.00 2.12
1415 1427 4.116238 GCTGGACAGTGCTTCTTCTATAC 58.884 47.826 0.82 0.00 0.00 1.47
1416 1428 3.769300 TGCTGGACAGTGCTTCTTCTATA 59.231 43.478 0.82 0.00 0.00 1.31
1417 1429 2.568956 TGCTGGACAGTGCTTCTTCTAT 59.431 45.455 0.82 0.00 0.00 1.98
1418 1430 1.970640 TGCTGGACAGTGCTTCTTCTA 59.029 47.619 0.82 0.00 0.00 2.10
1419 1431 0.761187 TGCTGGACAGTGCTTCTTCT 59.239 50.000 0.82 0.00 0.00 2.85
1420 1432 1.155042 CTGCTGGACAGTGCTTCTTC 58.845 55.000 0.82 0.00 41.86 2.87
1421 1433 3.319135 CTGCTGGACAGTGCTTCTT 57.681 52.632 0.82 0.00 41.86 2.52
1430 1442 1.609208 GGAAAGAAAGCTGCTGGACA 58.391 50.000 1.35 0.00 0.00 4.02
1431 1443 0.519077 CGGAAAGAAAGCTGCTGGAC 59.481 55.000 1.35 0.00 0.00 4.02
1432 1444 0.606401 CCGGAAAGAAAGCTGCTGGA 60.606 55.000 1.35 0.00 30.96 3.86
1433 1445 1.589716 CCCGGAAAGAAAGCTGCTGG 61.590 60.000 0.73 0.00 0.00 4.85
1434 1446 1.878775 CCCGGAAAGAAAGCTGCTG 59.121 57.895 0.73 0.00 0.00 4.41
1435 1447 1.973812 GCCCGGAAAGAAAGCTGCT 60.974 57.895 0.73 0.00 0.00 4.24
1436 1448 1.527433 AAGCCCGGAAAGAAAGCTGC 61.527 55.000 0.73 0.00 33.18 5.25
1437 1449 0.961753 AAAGCCCGGAAAGAAAGCTG 59.038 50.000 0.73 0.00 33.18 4.24
1438 1450 1.613925 GAAAAGCCCGGAAAGAAAGCT 59.386 47.619 0.73 0.00 34.64 3.74
1439 1451 1.339929 TGAAAAGCCCGGAAAGAAAGC 59.660 47.619 0.73 0.00 0.00 3.51
1440 1452 2.360801 TGTGAAAAGCCCGGAAAGAAAG 59.639 45.455 0.73 0.00 0.00 2.62
1441 1453 2.379972 TGTGAAAAGCCCGGAAAGAAA 58.620 42.857 0.73 0.00 0.00 2.52
1442 1454 2.060050 TGTGAAAAGCCCGGAAAGAA 57.940 45.000 0.73 0.00 0.00 2.52
1443 1455 1.885887 CATGTGAAAAGCCCGGAAAGA 59.114 47.619 0.73 0.00 0.00 2.52
1444 1456 1.067635 CCATGTGAAAAGCCCGGAAAG 60.068 52.381 0.73 0.00 0.00 2.62
1445 1457 0.965439 CCATGTGAAAAGCCCGGAAA 59.035 50.000 0.73 0.00 0.00 3.13
1446 1458 0.111446 TCCATGTGAAAAGCCCGGAA 59.889 50.000 0.73 0.00 0.00 4.30
1447 1459 0.111446 TTCCATGTGAAAAGCCCGGA 59.889 50.000 0.73 0.00 0.00 5.14
1448 1460 1.135024 CATTCCATGTGAAAAGCCCGG 60.135 52.381 0.00 0.00 36.33 5.73
1449 1461 1.818060 TCATTCCATGTGAAAAGCCCG 59.182 47.619 0.00 0.00 36.33 6.13
1450 1462 3.788937 CATCATTCCATGTGAAAAGCCC 58.211 45.455 0.00 0.00 36.33 5.19
1451 1463 3.118884 AGCATCATTCCATGTGAAAAGCC 60.119 43.478 0.00 0.00 36.33 4.35
1452 1464 4.110482 GAGCATCATTCCATGTGAAAAGC 58.890 43.478 0.00 0.00 36.33 3.51
1453 1465 5.124936 TCAGAGCATCATTCCATGTGAAAAG 59.875 40.000 0.00 0.00 37.82 2.27
1454 1466 5.011586 TCAGAGCATCATTCCATGTGAAAA 58.988 37.500 0.00 0.00 37.82 2.29
1455 1467 4.591929 TCAGAGCATCATTCCATGTGAAA 58.408 39.130 0.00 0.00 37.82 2.69
1456 1468 4.196971 CTCAGAGCATCATTCCATGTGAA 58.803 43.478 0.00 0.00 37.82 3.18
1457 1469 3.433173 CCTCAGAGCATCATTCCATGTGA 60.433 47.826 0.00 0.00 37.82 3.58
1458 1470 2.879026 CCTCAGAGCATCATTCCATGTG 59.121 50.000 0.00 0.00 37.82 3.21
1459 1471 2.748798 GCCTCAGAGCATCATTCCATGT 60.749 50.000 0.00 0.00 37.82 3.21
1460 1472 1.880675 GCCTCAGAGCATCATTCCATG 59.119 52.381 0.00 0.00 37.82 3.66
1461 1473 1.493446 TGCCTCAGAGCATCATTCCAT 59.507 47.619 0.00 0.00 38.00 3.41
1462 1474 0.913924 TGCCTCAGAGCATCATTCCA 59.086 50.000 0.00 0.00 38.00 3.53
1463 1475 3.794737 TGCCTCAGAGCATCATTCC 57.205 52.632 0.00 0.00 38.00 3.01
1470 1482 7.806695 GTGTTCTTCACTATGCCTCAGAGCA 62.807 48.000 0.00 0.00 44.29 4.26
1471 1483 3.194062 GTTCTTCACTATGCCTCAGAGC 58.806 50.000 0.00 0.00 0.00 4.09
1472 1484 4.180057 GTGTTCTTCACTATGCCTCAGAG 58.820 47.826 0.00 0.00 43.13 3.35
1473 1485 3.055819 GGTGTTCTTCACTATGCCTCAGA 60.056 47.826 0.00 0.00 45.50 3.27
1474 1486 3.055530 AGGTGTTCTTCACTATGCCTCAG 60.056 47.826 0.00 0.00 45.50 3.35
1475 1487 2.906389 AGGTGTTCTTCACTATGCCTCA 59.094 45.455 0.00 0.00 45.50 3.86
1476 1488 3.618690 AGGTGTTCTTCACTATGCCTC 57.381 47.619 0.00 0.00 45.50 4.70
1477 1489 4.532521 ACTAAGGTGTTCTTCACTATGCCT 59.467 41.667 0.00 0.00 45.50 4.75
1478 1490 4.833390 ACTAAGGTGTTCTTCACTATGCC 58.167 43.478 0.00 0.00 45.50 4.40
1520 1532 5.869649 AGTTTCCATGCTAAGGTGTTTTT 57.130 34.783 0.00 0.00 0.00 1.94
1521 1533 6.068670 AGTAGTTTCCATGCTAAGGTGTTTT 58.931 36.000 0.00 0.00 0.00 2.43
1522 1534 5.631119 AGTAGTTTCCATGCTAAGGTGTTT 58.369 37.500 0.00 0.00 0.00 2.83
1523 1535 5.242795 AGTAGTTTCCATGCTAAGGTGTT 57.757 39.130 0.00 0.00 0.00 3.32
1524 1536 4.910458 AGTAGTTTCCATGCTAAGGTGT 57.090 40.909 0.00 0.00 0.00 4.16
1525 1537 7.681939 TTTAAGTAGTTTCCATGCTAAGGTG 57.318 36.000 0.00 0.00 0.00 4.00
1526 1538 7.888546 ACATTTAAGTAGTTTCCATGCTAAGGT 59.111 33.333 0.00 0.00 0.00 3.50
1527 1539 8.281212 ACATTTAAGTAGTTTCCATGCTAAGG 57.719 34.615 0.00 0.00 0.00 2.69
1531 1543 8.088365 GGAAAACATTTAAGTAGTTTCCATGCT 58.912 33.333 14.70 0.00 34.64 3.79
1532 1544 7.330946 GGGAAAACATTTAAGTAGTTTCCATGC 59.669 37.037 18.47 5.77 34.64 4.06
1533 1545 8.585018 AGGGAAAACATTTAAGTAGTTTCCATG 58.415 33.333 18.47 2.95 34.64 3.66
1534 1546 8.721133 AGGGAAAACATTTAAGTAGTTTCCAT 57.279 30.769 18.47 12.78 34.64 3.41
1535 1547 9.816787 ATAGGGAAAACATTTAAGTAGTTTCCA 57.183 29.630 18.47 6.85 34.64 3.53
1539 1551 8.456471 GCGAATAGGGAAAACATTTAAGTAGTT 58.544 33.333 0.00 0.00 0.00 2.24
1540 1552 7.608761 TGCGAATAGGGAAAACATTTAAGTAGT 59.391 33.333 0.00 0.00 0.00 2.73
1541 1553 7.981142 TGCGAATAGGGAAAACATTTAAGTAG 58.019 34.615 0.00 0.00 0.00 2.57
1542 1554 7.925043 TGCGAATAGGGAAAACATTTAAGTA 57.075 32.000 0.00 0.00 0.00 2.24
1543 1555 6.827586 TGCGAATAGGGAAAACATTTAAGT 57.172 33.333 0.00 0.00 0.00 2.24
1544 1556 9.796120 TTAATGCGAATAGGGAAAACATTTAAG 57.204 29.630 0.00 0.00 0.00 1.85
1578 1590 8.127954 GCTTTTTCATCAAAATGCCTAAAAACA 58.872 29.630 1.80 0.00 42.66 2.83
1579 1591 8.492920 GCTTTTTCATCAAAATGCCTAAAAAC 57.507 30.769 1.80 0.00 42.66 2.43
1587 1599 5.866335 TCATGGCTTTTTCATCAAAATGC 57.134 34.783 4.38 4.38 45.48 3.56
1596 1608 9.651913 GGAAGTTTTATATTCATGGCTTTTTCA 57.348 29.630 0.00 0.00 0.00 2.69
1597 1609 9.875691 AGGAAGTTTTATATTCATGGCTTTTTC 57.124 29.630 0.00 0.00 0.00 2.29
1598 1610 9.875691 GAGGAAGTTTTATATTCATGGCTTTTT 57.124 29.630 0.00 0.00 0.00 1.94
1599 1611 8.478066 GGAGGAAGTTTTATATTCATGGCTTTT 58.522 33.333 0.00 0.00 0.00 2.27
1600 1612 7.841222 AGGAGGAAGTTTTATATTCATGGCTTT 59.159 33.333 0.00 0.00 0.00 3.51
1601 1613 7.357471 AGGAGGAAGTTTTATATTCATGGCTT 58.643 34.615 0.00 0.00 0.00 4.35
1602 1614 6.915786 AGGAGGAAGTTTTATATTCATGGCT 58.084 36.000 0.00 0.00 0.00 4.75
1603 1615 6.073003 CGAGGAGGAAGTTTTATATTCATGGC 60.073 42.308 0.00 0.00 0.00 4.40
1604 1616 6.428159 CCGAGGAGGAAGTTTTATATTCATGG 59.572 42.308 0.00 0.00 45.00 3.66
1605 1617 6.992715 ACCGAGGAGGAAGTTTTATATTCATG 59.007 38.462 0.00 0.00 45.00 3.07
1606 1618 6.992715 CACCGAGGAGGAAGTTTTATATTCAT 59.007 38.462 0.00 0.00 45.00 2.57
1607 1619 6.346096 CACCGAGGAGGAAGTTTTATATTCA 58.654 40.000 0.00 0.00 45.00 2.57
1608 1620 5.758784 CCACCGAGGAGGAAGTTTTATATTC 59.241 44.000 0.00 0.00 45.00 1.75
1609 1621 5.191124 ACCACCGAGGAGGAAGTTTTATATT 59.809 40.000 12.54 0.00 45.00 1.28
1610 1622 4.720273 ACCACCGAGGAGGAAGTTTTATAT 59.280 41.667 12.54 0.00 45.00 0.86
1611 1623 4.081309 CACCACCGAGGAGGAAGTTTTATA 60.081 45.833 12.54 0.00 45.00 0.98
1612 1624 2.910977 ACCACCGAGGAGGAAGTTTTAT 59.089 45.455 12.54 0.00 45.00 1.40
1613 1625 2.038033 CACCACCGAGGAGGAAGTTTTA 59.962 50.000 12.54 0.00 45.00 1.52
1614 1626 1.137697 ACCACCGAGGAGGAAGTTTT 58.862 50.000 12.54 0.00 45.00 2.43
1653 1665 0.313043 AAAGAACTTCGCCGACTCGA 59.687 50.000 0.00 0.00 36.60 4.04
1679 1691 0.540597 GGGAAAGGGAAGCAGCACTT 60.541 55.000 0.00 0.00 42.98 3.16
1682 1694 1.729267 AAGGGGAAAGGGAAGCAGCA 61.729 55.000 0.00 0.00 0.00 4.41
1695 1708 2.129555 GAGCAGTGGCAAGAAGGGGA 62.130 60.000 0.00 0.00 44.61 4.81
1784 1799 0.603569 AGTTTCGACGATGCTGAGGT 59.396 50.000 0.00 0.00 0.00 3.85
1789 1804 1.269723 TGTCTCAGTTTCGACGATGCT 59.730 47.619 0.00 0.00 32.93 3.79
1792 1807 5.230942 AGAATTTGTCTCAGTTTCGACGAT 58.769 37.500 0.00 0.00 32.93 3.73
1809 1824 0.391263 GGCCCACGACGAGAGAATTT 60.391 55.000 0.00 0.00 0.00 1.82
1864 1879 2.688507 GAGCAATGTCTCGACCTGAAA 58.311 47.619 0.00 0.00 0.00 2.69
1923 1938 1.647084 GTCCAACGACTTTTGCGCT 59.353 52.632 9.73 0.00 35.99 5.92
1937 1952 1.347707 AGAAGAAGTTGCCATCGTCCA 59.652 47.619 0.00 0.00 0.00 4.02
1945 1960 3.418684 TCAACCCTAGAAGAAGTTGCC 57.581 47.619 0.00 0.00 39.51 4.52
1990 2005 2.943978 CGCCCGTCTCAAGACCCTT 61.944 63.158 4.63 0.00 41.86 3.95
2020 2035 2.743636 TGGATGAAAGTGAGACGGTC 57.256 50.000 0.00 0.00 0.00 4.79
2065 2080 0.398318 AAGCACACCTTCAGTCCCTC 59.602 55.000 0.00 0.00 0.00 4.30
2089 2104 1.001520 CACCAGGGTCATGAACGTGTA 59.998 52.381 26.87 0.00 32.42 2.90
2095 2110 2.465914 ATCCTGCACCAGGGTCATGAA 61.466 52.381 11.10 0.00 41.90 2.57
2153 2168 2.355837 GCTGCAACACCTCGTCGA 60.356 61.111 0.00 0.00 0.00 4.20
2266 2281 0.036010 CTGAGTTCTGGGATGCCGTT 60.036 55.000 0.00 0.00 0.00 4.44
2272 2287 2.586792 GGCGCTGAGTTCTGGGAT 59.413 61.111 7.64 0.00 0.00 3.85
2287 2302 1.330655 TGGAGGTCTTGATCGAGGGC 61.331 60.000 10.19 3.85 0.00 5.19
2293 2308 5.788450 ACGATGATTATGGAGGTCTTGATC 58.212 41.667 0.00 0.00 0.00 2.92
2297 2312 3.967326 TGGACGATGATTATGGAGGTCTT 59.033 43.478 0.00 0.00 0.00 3.01
2298 2313 3.576861 TGGACGATGATTATGGAGGTCT 58.423 45.455 0.00 0.00 0.00 3.85
2308 2323 2.890808 ACGCACTATGGACGATGATT 57.109 45.000 0.00 0.00 0.00 2.57
2309 2324 2.885266 ACTACGCACTATGGACGATGAT 59.115 45.455 0.00 0.00 0.00 2.45
2316 2331 4.014406 TCAAGAGAACTACGCACTATGGA 58.986 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.