Multiple sequence alignment - TraesCS7D01G541600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G541600 chr7D 100.000 4046 0 0 1 4046 630971519 630975564 0.000000e+00 7472.0
1 TraesCS7D01G541600 chr7D 81.079 1427 146 57 469 1832 630706082 630707447 0.000000e+00 1026.0
2 TraesCS7D01G541600 chr7D 85.935 647 66 13 104 747 631337764 631337140 0.000000e+00 667.0
3 TraesCS7D01G541600 chr7D 94.415 376 13 6 1998 2372 595918879 595919247 4.540000e-159 571.0
4 TraesCS7D01G541600 chr7D 94.415 376 13 6 1998 2372 595920252 595920620 4.540000e-159 571.0
5 TraesCS7D01G541600 chr7D 94.149 376 14 6 1998 2372 595921625 595921993 2.110000e-157 566.0
6 TraesCS7D01G541600 chr7D 89.325 459 29 4 1122 1580 631336805 631336367 3.530000e-155 558.0
7 TraesCS7D01G541600 chr7D 93.351 376 17 6 1998 2372 595922997 595923365 2.130000e-152 549.0
8 TraesCS7D01G541600 chr7D 85.801 493 58 8 2478 2966 630707545 630708029 2.790000e-141 512.0
9 TraesCS7D01G541600 chr7D 90.426 376 15 8 1998 2372 595924370 595924725 3.660000e-130 475.0
10 TraesCS7D01G541600 chr7D 95.276 127 6 0 832 958 631337006 631336880 6.860000e-48 202.0
11 TraesCS7D01G541600 chr7D 90.083 121 12 0 3598 3718 631335789 631335669 1.510000e-34 158.0
12 TraesCS7D01G541600 chr7D 85.057 87 11 2 3719 3804 548815789 548815704 2.000000e-13 87.9
13 TraesCS7D01G541600 chr7D 89.474 57 3 2 1852 1905 630707494 630707550 7.260000e-08 69.4
14 TraesCS7D01G541600 chr7B 85.317 1042 119 23 2480 3507 733377367 733376346 0.000000e+00 1046.0
15 TraesCS7D01G541600 chr7B 82.363 1117 130 45 494 1567 733378721 733377629 0.000000e+00 909.0
16 TraesCS7D01G541600 chr7B 92.000 75 5 1 1958 2031 64415968 64415894 1.990000e-18 104.0
17 TraesCS7D01G541600 chr7B 90.667 75 6 1 1958 2031 64417410 64417336 9.250000e-17 99.0
18 TraesCS7D01G541600 chrUn 84.705 1033 107 27 832 1832 83675499 83674486 0.000000e+00 985.0
19 TraesCS7D01G541600 chrUn 93.939 462 24 3 3585 4044 88623929 88624388 0.000000e+00 695.0
20 TraesCS7D01G541600 chrUn 90.639 438 41 0 2478 2915 88621334 88621771 2.100000e-162 582.0
21 TraesCS7D01G541600 chrUn 84.567 473 62 10 2477 2944 83674439 83673973 3.690000e-125 459.0
22 TraesCS7D01G541600 chrUn 89.676 339 23 5 3171 3507 88622166 88622494 4.840000e-114 422.0
23 TraesCS7D01G541600 chrUn 81.122 392 32 19 469 832 83675904 83675527 3.980000e-70 276.0
24 TraesCS7D01G541600 chrUn 83.168 202 27 6 2979 3174 88621888 88622088 1.160000e-40 178.0
25 TraesCS7D01G541600 chrUn 85.034 147 20 2 598 743 88614825 88614970 9.060000e-32 148.0
26 TraesCS7D01G541600 chrUn 77.778 243 31 10 1665 1905 88621118 88621339 1.180000e-25 128.0
27 TraesCS7D01G541600 chr7A 87.231 744 62 13 832 1561 726658029 726658753 0.000000e+00 817.0
28 TraesCS7D01G541600 chr7A 87.231 744 62 13 832 1561 726669945 726670669 0.000000e+00 817.0
29 TraesCS7D01G541600 chr7A 85.811 740 75 22 832 1561 727003189 727002470 0.000000e+00 758.0
30 TraesCS7D01G541600 chr7A 85.217 460 58 7 2502 2957 726673766 726674219 7.920000e-127 464.0
31 TraesCS7D01G541600 chr7A 83.902 410 49 8 2488 2893 727048014 727047618 3.820000e-100 375.0
32 TraesCS7D01G541600 chr7A 89.595 173 18 0 1362 1534 726673588 726673760 1.890000e-53 220.0
33 TraesCS7D01G541600 chr7A 89.017 173 19 0 1362 1534 726661672 726661844 8.810000e-52 215.0
34 TraesCS7D01G541600 chr7A 83.012 259 23 9 594 832 727003474 727003217 8.810000e-52 215.0
35 TraesCS7D01G541600 chr7A 91.597 119 10 0 2502 2620 726661850 726661968 9.000000e-37 165.0
36 TraesCS7D01G541600 chr7A 79.245 159 17 4 1677 1832 726675187 726675332 3.330000e-16 97.1
37 TraesCS7D01G541600 chr7A 86.207 87 10 2 3719 3804 634351653 634351568 4.310000e-15 93.5
38 TraesCS7D01G541600 chr6A 92.500 560 27 4 1901 2459 44985755 44985210 0.000000e+00 787.0
39 TraesCS7D01G541600 chr6A 88.636 88 10 0 3717 3804 608160994 608160907 1.540000e-19 108.0
40 TraesCS7D01G541600 chr5D 88.245 587 36 22 1906 2472 27256289 27256862 0.000000e+00 671.0
41 TraesCS7D01G541600 chr2D 89.103 468 40 11 1952 2415 42075508 42075968 4.540000e-159 571.0
42 TraesCS7D01G541600 chr2D 96.875 32 1 0 1905 1936 536435159 536435128 2.000000e-03 54.7
43 TraesCS7D01G541600 chr2D 96.875 32 1 0 1905 1936 536436514 536436483 2.000000e-03 54.7
44 TraesCS7D01G541600 chr3B 82.883 444 46 22 2047 2472 115250766 115251197 4.940000e-99 372.0
45 TraesCS7D01G541600 chr3B 81.755 433 54 18 2047 2467 115275143 115275562 5.010000e-89 339.0
46 TraesCS7D01G541600 chr3B 92.000 100 7 1 1998 2096 747621628 747621727 5.450000e-29 139.0
47 TraesCS7D01G541600 chr3B 89.041 73 2 6 1910 1978 747621560 747621630 7.210000e-13 86.1
48 TraesCS7D01G541600 chr3B 94.444 54 3 0 3737 3790 391108856 391108803 2.590000e-12 84.2
49 TraesCS7D01G541600 chr4B 94.309 123 7 0 1906 2028 661532291 661532169 5.340000e-44 189.0
50 TraesCS7D01G541600 chr6B 82.051 195 8 13 1906 2096 677765775 677765946 1.520000e-29 141.0
51 TraesCS7D01G541600 chr6B 81.026 195 10 14 1906 2096 677889662 677889833 3.280000e-26 130.0
52 TraesCS7D01G541600 chr6B 81.287 171 15 14 2308 2465 715183315 715183481 5.490000e-24 122.0
53 TraesCS7D01G541600 chr6B 88.764 89 10 0 3956 4044 146430249 146430161 4.280000e-20 110.0
54 TraesCS7D01G541600 chr6B 88.312 77 3 6 1906 1978 678066407 678066481 2.000000e-13 87.9
55 TraesCS7D01G541600 chr3A 95.775 71 3 0 3956 4026 405687657 405687727 9.190000e-22 115.0
56 TraesCS7D01G541600 chr5B 86.458 96 13 0 3709 3804 230015812 230015907 5.530000e-19 106.0
57 TraesCS7D01G541600 chr2A 91.026 78 5 1 3956 4031 723195645 723195568 1.990000e-18 104.0
58 TraesCS7D01G541600 chr2B 86.957 92 11 1 3718 3808 694267954 694267863 7.150000e-18 102.0
59 TraesCS7D01G541600 chr2B 83.505 97 15 1 3709 3805 327172925 327173020 5.570000e-14 89.8
60 TraesCS7D01G541600 chr2B 100.000 28 0 0 3440 3467 409927929 409927956 7.000000e-03 52.8
61 TraesCS7D01G541600 chr6D 92.857 42 3 0 3723 3764 303981317 303981358 1.210000e-05 62.1
62 TraesCS7D01G541600 chr5A 86.441 59 3 4 1905 1963 212074087 212074034 4.370000e-05 60.2
63 TraesCS7D01G541600 chr5A 100.000 29 0 0 3072 3100 616610623 616610651 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G541600 chr7D 630971519 630975564 4045 False 7472.000000 7472 100.000000 1 4046 1 chr7D.!!$F1 4045
1 TraesCS7D01G541600 chr7D 595918879 595924725 5846 False 546.400000 571 93.351200 1998 2372 5 chr7D.!!$F2 374
2 TraesCS7D01G541600 chr7D 630706082 630708029 1947 False 535.800000 1026 85.451333 469 2966 3 chr7D.!!$F3 2497
3 TraesCS7D01G541600 chr7D 631335669 631337764 2095 True 396.250000 667 90.154750 104 3718 4 chr7D.!!$R2 3614
4 TraesCS7D01G541600 chr7B 733376346 733378721 2375 True 977.500000 1046 83.840000 494 3507 2 chr7B.!!$R2 3013
5 TraesCS7D01G541600 chrUn 83673973 83675904 1931 True 573.333333 985 83.464667 469 2944 3 chrUn.!!$R1 2475
6 TraesCS7D01G541600 chrUn 88621118 88624388 3270 False 401.000000 695 87.040000 1665 4044 5 chrUn.!!$F2 2379
7 TraesCS7D01G541600 chr7A 727002470 727003474 1004 True 486.500000 758 84.411500 594 1561 2 chr7A.!!$R3 967
8 TraesCS7D01G541600 chr7A 726669945 726675332 5387 False 399.525000 817 85.322000 832 2957 4 chr7A.!!$F2 2125
9 TraesCS7D01G541600 chr7A 726658029 726661968 3939 False 399.000000 817 89.281667 832 2620 3 chr7A.!!$F1 1788
10 TraesCS7D01G541600 chr6A 44985210 44985755 545 True 787.000000 787 92.500000 1901 2459 1 chr6A.!!$R1 558
11 TraesCS7D01G541600 chr5D 27256289 27256862 573 False 671.000000 671 88.245000 1906 2472 1 chr5D.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.111061 AACCATGCCAAGTCAGCAGA 59.889 50.0 0.00 0.00 44.9 4.26 F
391 392 0.242017 GGCTCACAGGTTGCAACATC 59.758 55.0 29.55 14.27 0.0 3.06 F
1976 2353 0.105964 GTGTGTAGTGTGTCTGGCCA 59.894 55.0 4.71 4.71 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2354 0.469331 CCTGGACTATGGCCGGACTA 60.469 60.000 9.82 0.0 33.45 2.59 R
1978 2355 1.762460 CCTGGACTATGGCCGGACT 60.762 63.158 9.82 0.0 33.45 3.85 R
3262 9674 0.108472 GGGAAAAGACGGACGGTAGG 60.108 60.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.358707 GTGCCCGCGCTTGGTTTA 61.359 61.111 5.56 0.00 35.36 2.01
21 22 3.358707 TGCCCGCGCTTGGTTTAC 61.359 61.111 5.56 0.00 35.36 2.01
22 23 4.111016 GCCCGCGCTTGGTTTACC 62.111 66.667 5.56 0.00 0.00 2.85
23 24 3.795342 CCCGCGCTTGGTTTACCG 61.795 66.667 5.56 0.00 39.43 4.02
24 25 3.045492 CCGCGCTTGGTTTACCGT 61.045 61.111 5.56 0.00 39.43 4.83
25 26 2.472934 CGCGCTTGGTTTACCGTC 59.527 61.111 5.56 0.00 39.43 4.79
26 27 2.025418 CGCGCTTGGTTTACCGTCT 61.025 57.895 5.56 0.00 39.43 4.18
27 28 1.785951 GCGCTTGGTTTACCGTCTC 59.214 57.895 0.00 0.00 39.43 3.36
28 29 1.952266 GCGCTTGGTTTACCGTCTCG 61.952 60.000 0.00 0.00 39.43 4.04
29 30 0.665369 CGCTTGGTTTACCGTCTCGT 60.665 55.000 0.00 0.00 39.43 4.18
30 31 1.505425 GCTTGGTTTACCGTCTCGTT 58.495 50.000 0.00 0.00 39.43 3.85
31 32 1.869132 GCTTGGTTTACCGTCTCGTTT 59.131 47.619 0.00 0.00 39.43 3.60
32 33 2.349155 GCTTGGTTTACCGTCTCGTTTG 60.349 50.000 0.00 0.00 39.43 2.93
33 34 1.219646 TGGTTTACCGTCTCGTTTGC 58.780 50.000 0.00 0.00 39.43 3.68
34 35 0.514255 GGTTTACCGTCTCGTTTGCC 59.486 55.000 0.00 0.00 0.00 4.52
35 36 1.219646 GTTTACCGTCTCGTTTGCCA 58.780 50.000 0.00 0.00 0.00 4.92
36 37 1.193874 GTTTACCGTCTCGTTTGCCAG 59.806 52.381 0.00 0.00 0.00 4.85
37 38 0.320073 TTACCGTCTCGTTTGCCAGG 60.320 55.000 0.00 0.00 0.00 4.45
38 39 1.466025 TACCGTCTCGTTTGCCAGGT 61.466 55.000 0.00 0.00 0.00 4.00
39 40 1.597027 CCGTCTCGTTTGCCAGGTT 60.597 57.895 0.00 0.00 0.00 3.50
40 41 1.569493 CGTCTCGTTTGCCAGGTTG 59.431 57.895 0.00 0.00 0.00 3.77
41 42 0.878523 CGTCTCGTTTGCCAGGTTGA 60.879 55.000 0.00 0.00 0.00 3.18
42 43 0.586802 GTCTCGTTTGCCAGGTTGAC 59.413 55.000 0.00 0.00 0.00 3.18
43 44 0.878523 TCTCGTTTGCCAGGTTGACG 60.879 55.000 4.77 4.77 35.24 4.35
44 45 1.153329 TCGTTTGCCAGGTTGACGT 60.153 52.632 0.00 0.00 35.42 4.34
45 46 0.745128 TCGTTTGCCAGGTTGACGTT 60.745 50.000 9.46 0.00 35.42 3.99
46 47 0.591236 CGTTTGCCAGGTTGACGTTG 60.591 55.000 0.00 0.00 0.00 4.10
47 48 0.736053 GTTTGCCAGGTTGACGTTGA 59.264 50.000 0.00 0.00 0.00 3.18
48 49 0.736053 TTTGCCAGGTTGACGTTGAC 59.264 50.000 0.00 0.00 0.00 3.18
49 50 1.098712 TTGCCAGGTTGACGTTGACC 61.099 55.000 12.01 12.01 36.15 4.02
50 51 2.604174 GCCAGGTTGACGTTGACCG 61.604 63.158 13.54 9.58 40.89 4.79
51 52 1.959226 CCAGGTTGACGTTGACCGG 60.959 63.158 13.54 0.00 40.89 5.28
52 53 1.227438 CAGGTTGACGTTGACCGGT 60.227 57.895 6.92 6.92 40.89 5.28
53 54 1.068585 AGGTTGACGTTGACCGGTC 59.931 57.895 28.17 28.17 40.89 4.79
54 55 1.227321 GGTTGACGTTGACCGGTCA 60.227 57.895 33.23 33.23 42.24 4.02
55 56 0.810823 GGTTGACGTTGACCGGTCAA 60.811 55.000 39.59 39.59 46.27 3.18
64 65 2.350057 TGACCGGTCAAAACCAATCA 57.650 45.000 34.60 8.10 46.86 2.57
65 66 2.656002 TGACCGGTCAAAACCAATCAA 58.344 42.857 34.60 6.79 46.86 2.57
66 67 3.024547 TGACCGGTCAAAACCAATCAAA 58.975 40.909 34.60 6.57 46.86 2.69
67 68 3.447586 TGACCGGTCAAAACCAATCAAAA 59.552 39.130 34.60 6.08 46.86 2.44
68 69 4.081642 TGACCGGTCAAAACCAATCAAAAA 60.082 37.500 34.60 5.35 46.86 1.94
69 70 4.185394 ACCGGTCAAAACCAATCAAAAAC 58.815 39.130 0.00 0.00 46.86 2.43
70 71 3.558006 CCGGTCAAAACCAATCAAAAACC 59.442 43.478 0.00 0.00 46.86 3.27
71 72 4.184629 CGGTCAAAACCAATCAAAAACCA 58.815 39.130 0.00 0.00 46.86 3.67
72 73 4.813697 CGGTCAAAACCAATCAAAAACCAT 59.186 37.500 0.00 0.00 46.86 3.55
73 74 5.277250 CGGTCAAAACCAATCAAAAACCATG 60.277 40.000 0.00 0.00 46.86 3.66
74 75 5.505489 GGTCAAAACCAATCAAAAACCATGC 60.505 40.000 0.00 0.00 45.68 4.06
75 76 4.578105 TCAAAACCAATCAAAAACCATGCC 59.422 37.500 0.00 0.00 0.00 4.40
76 77 3.853355 AACCAATCAAAAACCATGCCA 57.147 38.095 0.00 0.00 0.00 4.92
77 78 3.853355 ACCAATCAAAAACCATGCCAA 57.147 38.095 0.00 0.00 0.00 4.52
78 79 3.742385 ACCAATCAAAAACCATGCCAAG 58.258 40.909 0.00 0.00 0.00 3.61
79 80 3.136260 ACCAATCAAAAACCATGCCAAGT 59.864 39.130 0.00 0.00 0.00 3.16
80 81 3.747529 CCAATCAAAAACCATGCCAAGTC 59.252 43.478 0.00 0.00 0.00 3.01
81 82 4.378774 CAATCAAAAACCATGCCAAGTCA 58.621 39.130 0.00 0.00 0.00 3.41
82 83 3.731652 TCAAAAACCATGCCAAGTCAG 57.268 42.857 0.00 0.00 0.00 3.51
83 84 2.137523 CAAAAACCATGCCAAGTCAGC 58.862 47.619 0.00 0.00 0.00 4.26
84 85 1.412079 AAAACCATGCCAAGTCAGCA 58.588 45.000 0.00 0.00 45.94 4.41
85 86 0.963962 AAACCATGCCAAGTCAGCAG 59.036 50.000 0.00 0.00 44.90 4.24
86 87 0.111061 AACCATGCCAAGTCAGCAGA 59.889 50.000 0.00 0.00 44.90 4.26
87 88 0.330604 ACCATGCCAAGTCAGCAGAT 59.669 50.000 0.00 0.00 44.90 2.90
88 89 0.738975 CCATGCCAAGTCAGCAGATG 59.261 55.000 0.00 0.00 44.90 2.90
89 90 0.738975 CATGCCAAGTCAGCAGATGG 59.261 55.000 0.00 0.00 44.90 3.51
90 91 0.395311 ATGCCAAGTCAGCAGATGGG 60.395 55.000 1.44 0.00 44.90 4.00
91 92 1.300963 GCCAAGTCAGCAGATGGGA 59.699 57.895 1.44 0.00 33.45 4.37
92 93 1.028868 GCCAAGTCAGCAGATGGGAC 61.029 60.000 1.44 0.00 33.45 4.46
109 110 2.157085 GGGACATCTTCGTCGACAAAAC 59.843 50.000 17.16 0.00 36.73 2.43
110 111 3.057734 GGACATCTTCGTCGACAAAACT 58.942 45.455 17.16 0.00 36.73 2.66
118 119 5.924254 TCTTCGTCGACAAAACTGTATTCAT 59.076 36.000 17.16 0.00 0.00 2.57
122 123 5.118664 CGTCGACAAAACTGTATTCATGTCT 59.881 40.000 17.16 0.00 36.05 3.41
125 126 7.115805 GTCGACAAAACTGTATTCATGTCTGTA 59.884 37.037 11.55 0.00 36.05 2.74
133 134 6.890268 ACTGTATTCATGTCTGTAGACTACCA 59.110 38.462 10.14 1.66 44.99 3.25
140 141 1.736126 TCTGTAGACTACCAAGCGACG 59.264 52.381 10.14 0.00 0.00 5.12
143 144 1.736681 GTAGACTACCAAGCGACGACT 59.263 52.381 0.00 0.00 0.00 4.18
146 147 0.445436 ACTACCAAGCGACGACTACG 59.555 55.000 0.00 0.00 45.75 3.51
158 159 1.883084 GACTACGAGCAATGGGGCG 60.883 63.158 0.00 0.00 39.27 6.13
161 162 2.852495 CTACGAGCAATGGGGCGTGT 62.852 60.000 0.00 0.00 37.56 4.49
163 164 2.359850 GAGCAATGGGGCGTGTCA 60.360 61.111 0.00 0.00 39.27 3.58
167 168 1.586028 CAATGGGGCGTGTCAAAGG 59.414 57.895 0.00 0.00 0.00 3.11
170 171 0.623723 ATGGGGCGTGTCAAAGGTAT 59.376 50.000 0.00 0.00 0.00 2.73
175 176 2.007608 GGCGTGTCAAAGGTATTCTCC 58.992 52.381 0.00 0.00 0.00 3.71
176 177 1.659098 GCGTGTCAAAGGTATTCTCCG 59.341 52.381 0.00 0.00 0.00 4.63
196 197 1.685765 TGCTGGACGCCCTGTATCT 60.686 57.895 0.00 0.00 38.05 1.98
235 236 2.581216 TCGTACCTCTCACAAGGACT 57.419 50.000 0.00 0.00 38.87 3.85
256 257 8.852135 AGGACTAAAGTTCTAGTATATGCACTC 58.148 37.037 0.00 0.00 30.53 3.51
294 295 1.574526 CCCAGCTTCCCTCCATTCCA 61.575 60.000 0.00 0.00 0.00 3.53
295 296 0.332632 CCAGCTTCCCTCCATTCCAA 59.667 55.000 0.00 0.00 0.00 3.53
297 298 1.075601 AGCTTCCCTCCATTCCAACA 58.924 50.000 0.00 0.00 0.00 3.33
358 359 1.682867 TTGTAGCATCGACAAGCGCG 61.683 55.000 0.00 0.00 40.61 6.86
359 360 2.582226 TAGCATCGACAAGCGCGG 60.582 61.111 8.83 0.00 40.61 6.46
391 392 0.242017 GGCTCACAGGTTGCAACATC 59.758 55.000 29.55 14.27 0.00 3.06
401 402 2.144833 TTGCAACATCCTTGGCGCAG 62.145 55.000 10.83 0.00 36.09 5.18
402 403 2.879907 CAACATCCTTGGCGCAGG 59.120 61.111 10.83 8.91 34.86 4.85
450 451 6.206634 CAGCTCCAATTAGGTGAGTTGTTTAA 59.793 38.462 1.88 0.00 45.70 1.52
461 462 5.163774 GGTGAGTTGTTTAACACCGTAACAA 60.164 40.000 0.00 0.00 42.20 2.83
531 532 1.316735 GAAAGACGACGTTCCGAATCG 59.683 52.381 0.13 0.00 41.60 3.34
591 599 1.083806 TCCGAAGCTGCTATGTTGCG 61.084 55.000 0.90 0.52 35.36 4.85
605 613 2.959516 TGTTGCGATGTCAAGAGTAGG 58.040 47.619 0.00 0.00 0.00 3.18
616 624 7.653713 CGATGTCAAGAGTAGGCTATTACAAAT 59.346 37.037 0.00 0.00 0.00 2.32
707 716 8.677870 ATAATACCTTCCATGAATAGAGCTCT 57.322 34.615 22.17 22.17 0.00 4.09
708 717 7.385894 AATACCTTCCATGAATAGAGCTCTT 57.614 36.000 23.84 4.14 0.00 2.85
710 719 8.677870 ATACCTTCCATGAATAGAGCTCTTAT 57.322 34.615 23.84 11.31 0.00 1.73
723 733 6.724893 AGAGCTCTTATAGGAAGGAGAAAC 57.275 41.667 11.45 0.00 0.00 2.78
747 757 5.344743 TCGATCTGACAGGCTTAAATCTT 57.655 39.130 1.81 0.00 0.00 2.40
776 796 4.913355 TCCTCCTGGAATGGAATATGCTTA 59.087 41.667 2.33 0.00 39.87 3.09
821 876 4.957296 TCTTTTTGACGGAGCTTTACTCT 58.043 39.130 0.00 0.00 45.48 3.24
824 879 2.631418 TGACGGAGCTTTACTCTTCG 57.369 50.000 0.00 0.00 45.48 3.79
827 882 1.140407 CGGAGCTTTACTCTTCGCCG 61.140 60.000 0.00 0.00 45.48 6.46
830 885 1.921230 GAGCTTTACTCTTCGCCGAAG 59.079 52.381 20.46 20.46 42.62 3.79
846 935 0.816373 GAAGAGTCCACCGTACCTCC 59.184 60.000 0.00 0.00 0.00 4.30
847 936 0.408700 AAGAGTCCACCGTACCTCCT 59.591 55.000 0.00 0.00 0.00 3.69
853 965 0.750850 CCACCGTACCTCCTACATGG 59.249 60.000 0.00 0.00 37.10 3.66
855 967 1.407979 CACCGTACCTCCTACATGGAC 59.592 57.143 0.00 0.00 40.56 4.02
869 981 6.323996 TCCTACATGGACAAATCCTAGTACTG 59.676 42.308 5.39 0.00 46.43 2.74
952 1070 9.976511 CATATGCTTCAAATATTCCAAACTGAT 57.023 29.630 0.00 0.00 0.00 2.90
977 1112 0.255890 ATAACAATGTGGCGCCTCCT 59.744 50.000 29.70 14.82 35.26 3.69
1001 1136 4.803613 CACAAAACGATCGTATCTCCATGA 59.196 41.667 23.04 0.00 0.00 3.07
1016 1151 2.158711 TCCATGACTCATTGGCTCCATC 60.159 50.000 0.00 0.00 0.00 3.51
1057 1200 3.790416 TTTGCGAGCCAAGCCAGGT 62.790 57.895 0.00 0.00 34.34 4.00
1098 1241 0.898320 TTCGGGAAGAGGCTCAAGAG 59.102 55.000 18.26 4.07 0.00 2.85
1162 1305 0.949105 CGTACAAGCGCCTCAAGGTT 60.949 55.000 2.29 0.00 37.57 3.50
1256 1399 0.314302 CGAGGTCGACAGGTTCAACT 59.686 55.000 18.91 1.79 43.02 3.16
1312 1455 1.338973 CGCCACAGGGTACGTACATAT 59.661 52.381 26.02 9.17 36.17 1.78
1335 1479 5.069318 TCATGCCTACTGTTGAATGTTGAA 58.931 37.500 0.00 0.00 0.00 2.69
1337 1481 4.713553 TGCCTACTGTTGAATGTTGAAGA 58.286 39.130 0.00 0.00 0.00 2.87
1338 1482 5.316167 TGCCTACTGTTGAATGTTGAAGAT 58.684 37.500 0.00 0.00 0.00 2.40
1340 1484 5.182001 GCCTACTGTTGAATGTTGAAGATGT 59.818 40.000 0.00 0.00 0.00 3.06
1341 1485 6.605849 CCTACTGTTGAATGTTGAAGATGTG 58.394 40.000 0.00 0.00 0.00 3.21
1342 1486 6.205464 CCTACTGTTGAATGTTGAAGATGTGT 59.795 38.462 0.00 0.00 0.00 3.72
1343 1487 6.455360 ACTGTTGAATGTTGAAGATGTGTT 57.545 33.333 0.00 0.00 0.00 3.32
1344 1488 6.498304 ACTGTTGAATGTTGAAGATGTGTTC 58.502 36.000 0.00 0.00 0.00 3.18
1346 1490 6.861144 TGTTGAATGTTGAAGATGTGTTCAA 58.139 32.000 1.65 1.65 42.79 2.69
1347 1491 7.318893 TGTTGAATGTTGAAGATGTGTTCAAA 58.681 30.769 6.87 0.26 45.65 2.69
1348 1492 7.980662 TGTTGAATGTTGAAGATGTGTTCAAAT 59.019 29.630 6.87 2.21 45.65 2.32
1349 1493 8.819974 GTTGAATGTTGAAGATGTGTTCAAATT 58.180 29.630 6.87 8.83 45.65 1.82
1350 1494 8.945481 TGAATGTTGAAGATGTGTTCAAATTT 57.055 26.923 6.87 4.58 45.65 1.82
1351 1495 9.381033 TGAATGTTGAAGATGTGTTCAAATTTT 57.619 25.926 6.87 2.56 45.65 1.82
1407 1572 0.543410 TAAGGGAGACGGTGAAGGCA 60.543 55.000 0.00 0.00 0.00 4.75
1661 1917 6.258068 GGAATTCAGAGGTTTATACGAACAGG 59.742 42.308 7.93 0.00 0.00 4.00
1719 1979 5.163602 TGTCATACAAAAAGCCACTTTCGTT 60.164 36.000 0.00 0.00 31.99 3.85
1732 1992 4.442705 CACTTTCGTTAACTGTACGCTTG 58.557 43.478 3.71 0.00 38.81 4.01
1744 2004 2.507110 TACGCTTGGACCTGCAGAGC 62.507 60.000 17.39 14.77 0.00 4.09
1764 2028 2.754867 GCCTAGTCTCTACTCAGCCCAT 60.755 54.545 0.00 0.00 37.15 4.00
1795 2138 3.746045 AGTCGTAGCTTTTCTCCACAA 57.254 42.857 0.00 0.00 0.00 3.33
1802 2145 3.631250 AGCTTTTCTCCACAAGACCAAA 58.369 40.909 0.00 0.00 32.27 3.28
1804 2147 5.385198 AGCTTTTCTCCACAAGACCAAATA 58.615 37.500 0.00 0.00 32.27 1.40
1832 2175 8.000709 TCTTATAACTTGGCCAAGATCATTGAT 58.999 33.333 44.50 26.89 40.79 2.57
1833 2176 9.288576 CTTATAACTTGGCCAAGATCATTGATA 57.711 33.333 44.50 25.95 40.79 2.15
1834 2177 7.756395 ATAACTTGGCCAAGATCATTGATAG 57.244 36.000 44.50 20.39 40.79 2.08
1835 2178 3.887716 ACTTGGCCAAGATCATTGATAGC 59.112 43.478 44.50 1.07 40.79 2.97
1836 2179 2.497138 TGGCCAAGATCATTGATAGCG 58.503 47.619 0.61 0.00 0.00 4.26
1837 2180 2.104622 TGGCCAAGATCATTGATAGCGA 59.895 45.455 0.61 0.00 0.00 4.93
1839 2182 3.126514 GGCCAAGATCATTGATAGCGATG 59.873 47.826 0.00 1.47 37.27 3.84
1840 2183 3.126514 GCCAAGATCATTGATAGCGATGG 59.873 47.826 8.34 5.45 36.68 3.51
1844 2187 6.427853 CCAAGATCATTGATAGCGATGGTTTA 59.572 38.462 8.34 0.00 36.68 2.01
1845 2188 7.041167 CCAAGATCATTGATAGCGATGGTTTAA 60.041 37.037 8.34 0.00 36.68 1.52
1847 2190 9.725019 AAGATCATTGATAGCGATGGTTTAATA 57.275 29.630 8.34 0.00 36.68 0.98
1848 2191 9.896645 AGATCATTGATAGCGATGGTTTAATAT 57.103 29.630 8.34 0.00 36.68 1.28
1876 2253 1.079819 GAGCTTACACGCTGCAGGA 60.080 57.895 17.12 0.00 41.08 3.86
1972 2349 0.317519 TCGCGTGTGTAGTGTGTCTG 60.318 55.000 5.77 0.00 0.00 3.51
1973 2350 1.275471 CGCGTGTGTAGTGTGTCTGG 61.275 60.000 0.00 0.00 0.00 3.86
1974 2351 1.557443 GCGTGTGTAGTGTGTCTGGC 61.557 60.000 0.00 0.00 0.00 4.85
1975 2352 0.944311 CGTGTGTAGTGTGTCTGGCC 60.944 60.000 0.00 0.00 0.00 5.36
1976 2353 0.105964 GTGTGTAGTGTGTCTGGCCA 59.894 55.000 4.71 4.71 0.00 5.36
1977 2354 1.055849 TGTGTAGTGTGTCTGGCCAT 58.944 50.000 5.51 0.00 0.00 4.40
1978 2355 2.028476 GTGTGTAGTGTGTCTGGCCATA 60.028 50.000 5.51 0.00 0.00 2.74
1979 2356 2.233676 TGTGTAGTGTGTCTGGCCATAG 59.766 50.000 5.51 0.00 0.00 2.23
1980 2357 2.233922 GTGTAGTGTGTCTGGCCATAGT 59.766 50.000 5.51 0.00 0.00 2.12
1981 2358 2.496070 TGTAGTGTGTCTGGCCATAGTC 59.504 50.000 5.51 0.00 0.00 2.59
1982 2359 0.905357 AGTGTGTCTGGCCATAGTCC 59.095 55.000 5.51 0.00 0.00 3.85
2106 5239 0.743345 GTTAGCTGGTTAGTGGCCGG 60.743 60.000 0.00 0.00 35.53 6.13
2109 5242 4.388499 CTGGTTAGTGGCCGGCGT 62.388 66.667 22.54 10.32 0.00 5.68
2110 5243 4.690719 TGGTTAGTGGCCGGCGTG 62.691 66.667 22.54 0.00 0.00 5.34
2111 5244 4.692475 GGTTAGTGGCCGGCGTGT 62.692 66.667 22.54 9.49 0.00 4.49
2112 5245 3.419759 GTTAGTGGCCGGCGTGTG 61.420 66.667 22.54 0.00 0.00 3.82
2113 5246 3.931247 TTAGTGGCCGGCGTGTGT 61.931 61.111 22.54 5.44 0.00 3.72
2135 5284 1.227292 TGCGTGCGTTGGTCAGTTA 60.227 52.632 0.00 0.00 0.00 2.24
2416 5573 7.841956 TCGTTCATCCTTCTTCTTTCTTCTAT 58.158 34.615 0.00 0.00 0.00 1.98
2424 5581 7.233553 TCCTTCTTCTTTCTTCTATGTCTGTGA 59.766 37.037 0.00 0.00 0.00 3.58
2425 5590 7.545265 CCTTCTTCTTTCTTCTATGTCTGTGAG 59.455 40.741 0.00 0.00 0.00 3.51
2440 5605 4.081420 GTCTGTGAGAGAGAGAGAGAGAGT 60.081 50.000 0.00 0.00 0.00 3.24
2462 5627 0.555769 AGGTGAGGAGGAGAGCTAGG 59.444 60.000 0.00 0.00 0.00 3.02
2475 5640 3.026431 GCTAGGGCTACGGCAACCA 62.026 63.158 0.00 0.00 40.87 3.67
2476 5641 1.153429 CTAGGGCTACGGCAACCAC 60.153 63.158 0.00 0.00 40.87 4.16
2477 5642 1.895020 CTAGGGCTACGGCAACCACA 61.895 60.000 0.00 0.00 40.87 4.17
2478 5643 2.175035 TAGGGCTACGGCAACCACAC 62.175 60.000 0.00 0.00 40.87 3.82
2480 5645 2.356553 GCTACGGCAACCACACGA 60.357 61.111 0.00 0.00 38.54 4.35
2481 5646 2.664436 GCTACGGCAACCACACGAC 61.664 63.158 0.00 0.00 38.54 4.34
2482 5647 1.300311 CTACGGCAACCACACGACA 60.300 57.895 0.00 0.00 0.00 4.35
2483 5648 0.876777 CTACGGCAACCACACGACAA 60.877 55.000 0.00 0.00 0.00 3.18
2484 5649 0.876777 TACGGCAACCACACGACAAG 60.877 55.000 0.00 0.00 0.00 3.16
2485 5650 2.331451 GGCAACCACACGACAAGC 59.669 61.111 0.00 0.00 0.00 4.01
2486 5651 2.477176 GGCAACCACACGACAAGCA 61.477 57.895 0.00 0.00 0.00 3.91
2487 5652 1.654220 GCAACCACACGACAAGCAT 59.346 52.632 0.00 0.00 0.00 3.79
2489 5654 1.399727 GCAACCACACGACAAGCATAC 60.400 52.381 0.00 0.00 0.00 2.39
2490 5655 1.136363 CAACCACACGACAAGCATACG 60.136 52.381 0.00 0.00 0.00 3.06
2493 5658 1.079405 ACACGACAAGCATACGGGG 60.079 57.895 0.00 0.00 34.62 5.73
2494 5659 2.125269 ACGACAAGCATACGGGGC 60.125 61.111 0.00 0.00 0.00 5.80
2495 5660 3.261951 CGACAAGCATACGGGGCG 61.262 66.667 0.00 0.00 36.08 6.13
2496 5661 2.895372 GACAAGCATACGGGGCGG 60.895 66.667 0.00 0.00 36.08 6.13
2498 5663 4.856801 CAAGCATACGGGGCGGCT 62.857 66.667 9.56 0.00 38.45 5.52
2500 5665 2.516888 AAGCATACGGGGCGGCTAT 61.517 57.895 9.56 0.00 35.11 2.97
2524 5815 1.680522 GCTGCCCTTCATCGAGGAGA 61.681 60.000 0.00 0.00 39.25 3.71
2620 5911 0.038892 GTTCGCCTCCGACAACAGTA 60.039 55.000 0.00 0.00 44.30 2.74
2623 5914 0.806868 CGCCTCCGACAACAGTACTA 59.193 55.000 0.00 0.00 36.29 1.82
2654 5945 3.345808 GAAGCGCTGCACCGACAA 61.346 61.111 12.58 0.00 0.00 3.18
2665 5956 2.289631 TGCACCGACAATGAGATGACTT 60.290 45.455 0.00 0.00 0.00 3.01
2685 5976 0.325933 CCATGTCAACAGAGCAGGGA 59.674 55.000 0.00 0.00 36.30 4.20
2766 6083 1.805254 GTACGGGCACTTCTCGCTA 59.195 57.895 0.00 0.00 0.00 4.26
2814 6131 1.091771 CGGAGCATGTGTCCATCCAC 61.092 60.000 14.47 0.00 33.14 4.02
2916 9275 1.347221 GTTTCGATGGCCGCTTACG 59.653 57.895 0.00 0.00 38.37 3.18
2927 9286 2.420043 GCTTACGGGCGCCAGATA 59.580 61.111 33.66 17.79 0.00 1.98
2958 9317 3.050619 GAGTAACTCATATTGCGGACCG 58.949 50.000 10.29 10.29 0.00 4.79
2968 9374 1.893544 TTGCGGACCGTTTTTATGGA 58.106 45.000 16.73 0.00 0.00 3.41
2971 9377 2.937799 TGCGGACCGTTTTTATGGATAC 59.062 45.455 16.73 0.00 0.00 2.24
2982 9388 5.881923 TTTTATGGATACGGCTAGGTCTT 57.118 39.130 0.00 0.00 42.51 3.01
2984 9390 6.585695 TTTATGGATACGGCTAGGTCTTAG 57.414 41.667 0.00 0.00 42.51 2.18
2988 9394 5.448654 TGGATACGGCTAGGTCTTAGTTTA 58.551 41.667 0.00 0.00 42.51 2.01
2989 9395 5.533903 TGGATACGGCTAGGTCTTAGTTTAG 59.466 44.000 0.00 0.00 42.51 1.85
2990 9396 5.534278 GGATACGGCTAGGTCTTAGTTTAGT 59.466 44.000 0.00 0.00 0.00 2.24
2991 9397 4.715527 ACGGCTAGGTCTTAGTTTAGTG 57.284 45.455 0.00 0.00 0.00 2.74
2992 9398 4.338879 ACGGCTAGGTCTTAGTTTAGTGA 58.661 43.478 0.00 0.00 0.00 3.41
2993 9399 4.954826 ACGGCTAGGTCTTAGTTTAGTGAT 59.045 41.667 0.00 0.00 0.00 3.06
2994 9400 6.125029 ACGGCTAGGTCTTAGTTTAGTGATA 58.875 40.000 0.00 0.00 0.00 2.15
2995 9401 6.776603 ACGGCTAGGTCTTAGTTTAGTGATAT 59.223 38.462 0.00 0.00 0.00 1.63
2996 9402 7.941238 ACGGCTAGGTCTTAGTTTAGTGATATA 59.059 37.037 0.00 0.00 0.00 0.86
2997 9403 8.790718 CGGCTAGGTCTTAGTTTAGTGATATAA 58.209 37.037 0.00 0.00 0.00 0.98
2998 9404 9.911138 GGCTAGGTCTTAGTTTAGTGATATAAC 57.089 37.037 0.00 0.00 0.00 1.89
3021 9427 8.926715 AACATGTAAGAAAGAAACAGAAAACC 57.073 30.769 0.00 0.00 0.00 3.27
3022 9428 8.062065 ACATGTAAGAAAGAAACAGAAAACCA 57.938 30.769 0.00 0.00 0.00 3.67
3023 9429 8.527810 ACATGTAAGAAAGAAACAGAAAACCAA 58.472 29.630 0.00 0.00 0.00 3.67
3024 9430 9.364989 CATGTAAGAAAGAAACAGAAAACCAAA 57.635 29.630 0.00 0.00 0.00 3.28
3025 9431 9.936759 ATGTAAGAAAGAAACAGAAAACCAAAA 57.063 25.926 0.00 0.00 0.00 2.44
3026 9432 9.765795 TGTAAGAAAGAAACAGAAAACCAAAAA 57.234 25.926 0.00 0.00 0.00 1.94
3069 9475 8.628280 TCTCAATGTAAGATCTCATGAGTACAG 58.372 37.037 21.92 11.77 0.00 2.74
3075 9481 1.734163 TCTCATGAGTACAGCGTCGA 58.266 50.000 21.92 0.00 0.00 4.20
3076 9482 2.289565 TCTCATGAGTACAGCGTCGAT 58.710 47.619 21.92 0.00 0.00 3.59
3077 9483 2.683362 TCTCATGAGTACAGCGTCGATT 59.317 45.455 21.92 0.00 0.00 3.34
3078 9484 2.786027 CTCATGAGTACAGCGTCGATTG 59.214 50.000 14.95 0.00 0.00 2.67
3087 9493 3.243336 ACAGCGTCGATTGAGACTTAAC 58.757 45.455 0.00 0.00 38.90 2.01
3112 9518 9.442047 ACCAAGTCTCATTCAACTAAGATTTAG 57.558 33.333 0.00 0.00 0.00 1.85
3117 9523 9.155975 GTCTCATTCAACTAAGATTTAGCAAGA 57.844 33.333 0.00 0.00 0.00 3.02
3119 9525 8.268850 TCATTCAACTAAGATTTAGCAAGACC 57.731 34.615 0.00 0.00 0.00 3.85
3120 9526 7.882791 TCATTCAACTAAGATTTAGCAAGACCA 59.117 33.333 0.00 0.00 0.00 4.02
3123 9529 8.044060 TCAACTAAGATTTAGCAAGACCATTG 57.956 34.615 0.00 0.00 0.00 2.82
3217 9627 5.617528 TGTACTGTACCAAGGAAAGACAA 57.382 39.130 14.91 0.00 0.00 3.18
3225 9635 3.387050 ACCAAGGAAAGACAACTAGACGT 59.613 43.478 0.00 0.00 0.00 4.34
3230 9640 7.307219 CCAAGGAAAGACAACTAGACGTAAAAG 60.307 40.741 0.00 0.00 0.00 2.27
3236 9648 8.483307 AAGACAACTAGACGTAAAAGAAAACA 57.517 30.769 0.00 0.00 0.00 2.83
3291 9703 2.159627 CCGTCTTTTCCCTTCGATTGTG 59.840 50.000 0.00 0.00 0.00 3.33
3300 9712 1.150827 CTTCGATTGTGCACTGCTCA 58.849 50.000 19.41 1.77 0.00 4.26
3303 9715 1.878775 GATTGTGCACTGCTCACCC 59.121 57.895 19.41 0.00 31.72 4.61
3310 9722 1.860484 GCACTGCTCACCCAAGCTTC 61.860 60.000 0.00 0.00 42.94 3.86
3326 9738 5.237779 CCAAGCTTCAAAATTGCACTGAATT 59.762 36.000 0.00 0.00 0.00 2.17
3342 9754 5.411361 CACTGAATTGACGGTAATGGAAAGA 59.589 40.000 0.00 0.00 0.00 2.52
3353 9765 1.251251 ATGGAAAGAAGCACCTGCAC 58.749 50.000 0.00 0.00 45.16 4.57
3355 9767 0.312102 GGAAAGAAGCACCTGCACAC 59.688 55.000 0.00 0.00 45.16 3.82
3372 9784 7.069455 ACCTGCACACGCCAGATTATATATATA 59.931 37.037 0.00 0.00 37.32 0.86
3414 9826 5.065218 CCATTTACCTGCGCCAGATTATATC 59.935 44.000 4.18 0.00 32.44 1.63
3419 9833 3.859961 CCTGCGCCAGATTATATCTTACG 59.140 47.826 4.18 0.00 37.58 3.18
3437 9851 3.159353 ACGAGTAACGCATATTGCAGA 57.841 42.857 0.00 0.00 45.36 4.26
3438 9852 3.717707 ACGAGTAACGCATATTGCAGAT 58.282 40.909 0.00 0.00 45.36 2.90
3507 9921 4.822685 TTGGACGCCACTACCTAATAAA 57.177 40.909 0.00 0.00 30.78 1.40
3511 9925 6.181908 TGGACGCCACTACCTAATAAAAATT 58.818 36.000 0.00 0.00 0.00 1.82
3524 9980 4.918810 ATAAAAATTGAGCGTCCCATCC 57.081 40.909 0.00 0.00 0.00 3.51
3535 9991 2.193248 CCCATCCGCCTCCTTTCC 59.807 66.667 0.00 0.00 0.00 3.13
3553 10009 2.272146 GCCCTTGCCGAAGATGGA 59.728 61.111 0.00 0.00 0.00 3.41
3555 10011 0.965363 GCCCTTGCCGAAGATGGAAA 60.965 55.000 0.00 0.00 0.00 3.13
3571 10029 3.420893 TGGAAACAATGTCCACCTGATC 58.579 45.455 0.00 0.00 40.33 2.92
3576 10034 3.831323 ACAATGTCCACCTGATCACAAA 58.169 40.909 0.00 0.00 0.00 2.83
3577 10035 3.822735 ACAATGTCCACCTGATCACAAAG 59.177 43.478 0.00 0.00 0.00 2.77
3578 10036 3.795688 ATGTCCACCTGATCACAAAGT 57.204 42.857 0.00 0.00 0.00 2.66
3579 10037 2.849942 TGTCCACCTGATCACAAAGTG 58.150 47.619 0.00 0.00 33.13 3.16
3580 10038 2.172505 TGTCCACCTGATCACAAAGTGT 59.827 45.455 0.00 0.00 34.79 3.55
3712 11882 4.771903 TGCCCGCAACTAATATAAACTCA 58.228 39.130 0.00 0.00 0.00 3.41
3713 11883 5.373222 TGCCCGCAACTAATATAAACTCAT 58.627 37.500 0.00 0.00 0.00 2.90
3800 12335 6.906848 AGATATTTATTTTGGGACGAAGGGA 58.093 36.000 0.00 0.00 0.00 4.20
3836 12371 7.384932 TGACACATTCGATGGCTATTAATACTG 59.615 37.037 0.00 0.00 33.60 2.74
3837 12372 7.441836 ACACATTCGATGGCTATTAATACTGA 58.558 34.615 0.00 0.00 33.60 3.41
3839 12374 8.223769 CACATTCGATGGCTATTAATACTGAAC 58.776 37.037 0.00 0.00 33.60 3.18
3888 12532 6.751514 TTTACTGTTCGGTAATGATTGCAT 57.248 33.333 5.27 0.00 35.92 3.96
4003 12647 1.067295 AGCCAAGTGGGAGATGTTGA 58.933 50.000 0.00 0.00 40.01 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.358707 TAAACCAAGCGCGGGCAC 61.359 61.111 27.20 0.00 43.41 5.01
5 6 4.111016 GGTAAACCAAGCGCGGGC 62.111 66.667 17.92 17.92 36.10 6.13
6 7 3.795342 CGGTAAACCAAGCGCGGG 61.795 66.667 18.00 18.00 35.14 6.13
7 8 3.018840 GACGGTAAACCAAGCGCGG 62.019 63.158 8.83 0.00 43.87 6.46
8 9 1.952266 GAGACGGTAAACCAAGCGCG 61.952 60.000 0.00 0.00 43.87 6.86
9 10 1.785951 GAGACGGTAAACCAAGCGC 59.214 57.895 0.00 0.00 43.87 5.92
10 11 0.665369 ACGAGACGGTAAACCAAGCG 60.665 55.000 0.00 0.22 45.44 4.68
11 12 1.505425 AACGAGACGGTAAACCAAGC 58.495 50.000 0.00 0.00 35.14 4.01
12 13 2.349155 GCAAACGAGACGGTAAACCAAG 60.349 50.000 0.00 0.00 35.14 3.61
13 14 1.598601 GCAAACGAGACGGTAAACCAA 59.401 47.619 0.00 0.00 35.14 3.67
14 15 1.219646 GCAAACGAGACGGTAAACCA 58.780 50.000 0.00 0.00 35.14 3.67
15 16 0.514255 GGCAAACGAGACGGTAAACC 59.486 55.000 0.00 0.00 0.00 3.27
16 17 1.193874 CTGGCAAACGAGACGGTAAAC 59.806 52.381 0.00 0.00 0.00 2.01
17 18 1.504359 CTGGCAAACGAGACGGTAAA 58.496 50.000 0.00 0.00 0.00 2.01
18 19 0.320073 CCTGGCAAACGAGACGGTAA 60.320 55.000 0.00 0.00 0.00 2.85
19 20 1.290955 CCTGGCAAACGAGACGGTA 59.709 57.895 0.00 0.00 0.00 4.02
20 21 2.030562 CCTGGCAAACGAGACGGT 59.969 61.111 0.00 0.00 0.00 4.83
21 22 1.597027 AACCTGGCAAACGAGACGG 60.597 57.895 0.00 0.00 0.00 4.79
22 23 0.878523 TCAACCTGGCAAACGAGACG 60.879 55.000 0.00 0.00 0.00 4.18
23 24 0.586802 GTCAACCTGGCAAACGAGAC 59.413 55.000 0.00 0.00 0.00 3.36
24 25 0.878523 CGTCAACCTGGCAAACGAGA 60.879 55.000 9.02 0.00 35.45 4.04
25 26 1.157870 ACGTCAACCTGGCAAACGAG 61.158 55.000 18.32 0.00 37.13 4.18
26 27 0.745128 AACGTCAACCTGGCAAACGA 60.745 50.000 18.32 0.00 37.13 3.85
27 28 0.591236 CAACGTCAACCTGGCAAACG 60.591 55.000 12.09 12.09 39.16 3.60
28 29 0.736053 TCAACGTCAACCTGGCAAAC 59.264 50.000 0.00 0.00 0.00 2.93
29 30 0.736053 GTCAACGTCAACCTGGCAAA 59.264 50.000 0.00 0.00 0.00 3.68
30 31 1.098712 GGTCAACGTCAACCTGGCAA 61.099 55.000 11.11 0.00 32.54 4.52
31 32 1.525077 GGTCAACGTCAACCTGGCA 60.525 57.895 11.11 0.00 32.54 4.92
32 33 2.604174 CGGTCAACGTCAACCTGGC 61.604 63.158 15.10 0.00 37.93 4.85
33 34 1.959226 CCGGTCAACGTCAACCTGG 60.959 63.158 15.10 13.58 42.24 4.45
34 35 1.219522 GACCGGTCAACGTCAACCTG 61.220 60.000 29.75 11.81 42.24 4.00
35 36 1.068585 GACCGGTCAACGTCAACCT 59.931 57.895 29.75 0.00 42.24 3.50
36 37 0.810823 TTGACCGGTCAACGTCAACC 60.811 55.000 39.59 10.71 43.90 3.77
37 38 2.680429 TTGACCGGTCAACGTCAAC 58.320 52.632 39.59 11.48 43.90 3.18
44 45 2.656002 TGATTGGTTTTGACCGGTCAA 58.344 42.857 39.59 39.59 46.72 3.18
45 46 2.350057 TGATTGGTTTTGACCGGTCA 57.650 45.000 33.23 33.23 37.91 4.02
46 47 3.719173 TTTGATTGGTTTTGACCGGTC 57.281 42.857 28.17 28.17 0.00 4.79
47 48 4.185394 GTTTTTGATTGGTTTTGACCGGT 58.815 39.130 6.92 6.92 0.00 5.28
48 49 3.558006 GGTTTTTGATTGGTTTTGACCGG 59.442 43.478 0.00 0.00 0.00 5.28
49 50 4.184629 TGGTTTTTGATTGGTTTTGACCG 58.815 39.130 0.00 0.00 0.00 4.79
50 51 5.505489 GCATGGTTTTTGATTGGTTTTGACC 60.505 40.000 0.00 0.00 0.00 4.02
51 52 5.505489 GGCATGGTTTTTGATTGGTTTTGAC 60.505 40.000 0.00 0.00 0.00 3.18
52 53 4.578105 GGCATGGTTTTTGATTGGTTTTGA 59.422 37.500 0.00 0.00 0.00 2.69
53 54 4.337555 TGGCATGGTTTTTGATTGGTTTTG 59.662 37.500 0.00 0.00 0.00 2.44
54 55 4.530875 TGGCATGGTTTTTGATTGGTTTT 58.469 34.783 0.00 0.00 0.00 2.43
55 56 4.162040 TGGCATGGTTTTTGATTGGTTT 57.838 36.364 0.00 0.00 0.00 3.27
56 57 3.853355 TGGCATGGTTTTTGATTGGTT 57.147 38.095 0.00 0.00 0.00 3.67
57 58 3.136260 ACTTGGCATGGTTTTTGATTGGT 59.864 39.130 5.31 0.00 0.00 3.67
58 59 3.742385 ACTTGGCATGGTTTTTGATTGG 58.258 40.909 5.31 0.00 0.00 3.16
59 60 4.378774 TGACTTGGCATGGTTTTTGATTG 58.621 39.130 5.31 0.00 0.00 2.67
60 61 4.634199 CTGACTTGGCATGGTTTTTGATT 58.366 39.130 5.31 0.00 0.00 2.57
61 62 3.555586 GCTGACTTGGCATGGTTTTTGAT 60.556 43.478 5.31 0.00 0.00 2.57
62 63 2.224018 GCTGACTTGGCATGGTTTTTGA 60.224 45.455 5.31 0.00 0.00 2.69
63 64 2.137523 GCTGACTTGGCATGGTTTTTG 58.862 47.619 5.31 0.00 0.00 2.44
64 65 1.761784 TGCTGACTTGGCATGGTTTTT 59.238 42.857 5.31 0.00 34.56 1.94
65 66 1.342174 CTGCTGACTTGGCATGGTTTT 59.658 47.619 5.31 0.00 39.07 2.43
66 67 0.963962 CTGCTGACTTGGCATGGTTT 59.036 50.000 5.31 0.00 39.07 3.27
67 68 0.111061 TCTGCTGACTTGGCATGGTT 59.889 50.000 5.31 0.00 39.07 3.67
68 69 0.330604 ATCTGCTGACTTGGCATGGT 59.669 50.000 5.31 0.00 39.07 3.55
69 70 0.738975 CATCTGCTGACTTGGCATGG 59.261 55.000 5.31 0.00 39.07 3.66
70 71 0.738975 CCATCTGCTGACTTGGCATG 59.261 55.000 0.00 0.00 39.07 4.06
71 72 0.395311 CCCATCTGCTGACTTGGCAT 60.395 55.000 7.53 0.00 39.07 4.40
72 73 1.001764 CCCATCTGCTGACTTGGCA 60.002 57.895 7.53 0.00 38.10 4.92
73 74 1.028868 GTCCCATCTGCTGACTTGGC 61.029 60.000 7.53 0.00 0.00 4.52
74 75 0.325933 TGTCCCATCTGCTGACTTGG 59.674 55.000 6.31 6.31 0.00 3.61
75 76 2.093075 AGATGTCCCATCTGCTGACTTG 60.093 50.000 5.96 0.00 0.00 3.16
76 77 2.194859 AGATGTCCCATCTGCTGACTT 58.805 47.619 5.96 0.00 0.00 3.01
77 78 1.876849 AGATGTCCCATCTGCTGACT 58.123 50.000 5.96 0.00 0.00 3.41
78 79 2.559440 GAAGATGTCCCATCTGCTGAC 58.441 52.381 7.46 0.00 0.00 3.51
79 80 1.137675 CGAAGATGTCCCATCTGCTGA 59.862 52.381 7.46 0.00 0.00 4.26
80 81 1.134580 ACGAAGATGTCCCATCTGCTG 60.135 52.381 7.46 5.35 0.00 4.41
81 82 1.137872 GACGAAGATGTCCCATCTGCT 59.862 52.381 7.46 0.00 32.61 4.24
82 83 1.576356 GACGAAGATGTCCCATCTGC 58.424 55.000 7.46 4.96 32.61 4.26
83 84 1.405463 TCGACGAAGATGTCCCATCTG 59.595 52.381 7.46 0.00 35.40 2.90
84 85 1.405821 GTCGACGAAGATGTCCCATCT 59.594 52.381 0.00 0.92 35.40 2.90
85 86 1.134367 TGTCGACGAAGATGTCCCATC 59.866 52.381 11.62 0.00 35.40 3.51
86 87 1.182667 TGTCGACGAAGATGTCCCAT 58.817 50.000 11.62 0.00 35.40 4.00
87 88 0.963225 TTGTCGACGAAGATGTCCCA 59.037 50.000 11.62 0.00 35.40 4.37
88 89 2.074547 TTTGTCGACGAAGATGTCCC 57.925 50.000 14.37 0.00 35.40 4.46
89 90 3.057734 AGTTTTGTCGACGAAGATGTCC 58.942 45.455 17.41 4.38 35.40 4.02
90 91 3.489785 ACAGTTTTGTCGACGAAGATGTC 59.510 43.478 22.50 12.16 29.46 3.06
91 92 3.454375 ACAGTTTTGTCGACGAAGATGT 58.546 40.909 22.50 22.50 29.46 3.06
92 93 5.763444 ATACAGTTTTGTCGACGAAGATG 57.237 39.130 21.56 21.56 38.76 2.90
93 94 5.924254 TGAATACAGTTTTGTCGACGAAGAT 59.076 36.000 17.41 8.30 38.76 2.40
94 95 5.283294 TGAATACAGTTTTGTCGACGAAGA 58.717 37.500 17.41 7.22 38.76 2.87
95 96 5.570262 TGAATACAGTTTTGTCGACGAAG 57.430 39.130 17.41 9.59 38.76 3.79
96 97 5.464057 ACATGAATACAGTTTTGTCGACGAA 59.536 36.000 14.37 14.37 38.76 3.85
97 98 4.986034 ACATGAATACAGTTTTGTCGACGA 59.014 37.500 11.62 6.16 38.76 4.20
98 99 5.118664 AGACATGAATACAGTTTTGTCGACG 59.881 40.000 11.62 0.00 37.38 5.12
99 100 6.073765 ACAGACATGAATACAGTTTTGTCGAC 60.074 38.462 9.11 9.11 37.38 4.20
100 101 5.989168 ACAGACATGAATACAGTTTTGTCGA 59.011 36.000 0.00 0.00 37.38 4.20
101 102 6.228273 ACAGACATGAATACAGTTTTGTCG 57.772 37.500 0.00 0.00 37.38 4.35
102 103 8.436200 GTCTACAGACATGAATACAGTTTTGTC 58.564 37.037 0.00 0.00 44.18 3.18
122 123 1.466167 GTCGTCGCTTGGTAGTCTACA 59.534 52.381 12.08 0.00 0.00 2.74
125 126 1.736681 GTAGTCGTCGCTTGGTAGTCT 59.263 52.381 0.00 0.00 0.00 3.24
133 134 0.170561 ATTGCTCGTAGTCGTCGCTT 59.829 50.000 0.00 0.00 38.33 4.68
140 141 1.883084 CGCCCCATTGCTCGTAGTC 60.883 63.158 0.00 0.00 0.00 2.59
143 144 2.125310 CACGCCCCATTGCTCGTA 60.125 61.111 0.00 0.00 33.51 3.43
146 147 1.523154 TTTGACACGCCCCATTGCTC 61.523 55.000 0.00 0.00 0.00 4.26
158 159 3.000727 CACCGGAGAATACCTTTGACAC 58.999 50.000 9.46 0.00 0.00 3.67
161 162 1.906574 AGCACCGGAGAATACCTTTGA 59.093 47.619 9.46 0.00 0.00 2.69
163 164 1.065418 CCAGCACCGGAGAATACCTTT 60.065 52.381 9.46 0.00 0.00 3.11
167 168 0.527817 CGTCCAGCACCGGAGAATAC 60.528 60.000 9.46 0.00 35.10 1.89
190 191 6.538381 TGTACTTGTCGATACGGTAAGATACA 59.462 38.462 0.00 1.01 0.00 2.29
196 197 4.332543 ACGATGTACTTGTCGATACGGTAA 59.667 41.667 18.10 0.00 40.11 2.85
235 236 8.672823 TCTCGAGTGCATATACTAGAACTTTA 57.327 34.615 13.13 0.00 33.01 1.85
256 257 4.422546 GGGAACCGACTATATTCTCTCG 57.577 50.000 0.00 0.00 40.86 4.04
315 316 1.534595 GCAGGCAAGCGTGGAATATTG 60.535 52.381 15.46 0.00 33.02 1.90
378 379 0.037975 GCCAAGGATGTTGCAACCTG 60.038 55.000 26.14 14.51 36.75 4.00
407 408 2.456119 GCGACGGGAGCAAGTCATG 61.456 63.158 0.00 0.00 37.23 3.07
408 409 2.125512 GCGACGGGAGCAAGTCAT 60.126 61.111 0.00 0.00 37.23 3.06
409 410 3.573772 CTGCGACGGGAGCAAGTCA 62.574 63.158 0.00 0.00 44.67 3.41
410 411 2.811317 CTGCGACGGGAGCAAGTC 60.811 66.667 0.00 0.00 44.67 3.01
419 420 1.154205 CCTAATTGGAGCTGCGACGG 61.154 60.000 0.00 0.00 38.35 4.79
432 433 5.824097 ACGGTGTTAAACAACTCACCTAATT 59.176 36.000 10.66 0.00 45.44 1.40
484 485 5.108517 TGCACAAATCTGGTTGTCTTTTTC 58.891 37.500 0.00 0.00 39.73 2.29
489 490 2.559668 CCATGCACAAATCTGGTTGTCT 59.440 45.455 0.00 0.00 39.73 3.41
531 532 1.548986 CATCAAATTTTCCGAGCGCC 58.451 50.000 2.29 0.00 0.00 6.53
538 540 6.017400 TCTGACTCTTGCATCAAATTTTCC 57.983 37.500 0.00 0.00 0.00 3.13
572 574 1.083806 CGCAACATAGCAGCTTCGGA 61.084 55.000 0.00 0.00 0.00 4.55
591 599 8.894768 ATTTGTAATAGCCTACTCTTGACATC 57.105 34.615 0.00 0.00 0.00 3.06
605 613 8.289618 TCGCAATTAATCTGGATTTGTAATAGC 58.710 33.333 1.01 0.00 32.50 2.97
616 624 4.141505 TGGGATCTTCGCAATTAATCTGGA 60.142 41.667 0.00 0.00 36.34 3.86
663 671 1.436179 TTCCATGGTTCCCCGGGAAA 61.436 55.000 26.32 4.18 43.86 3.13
666 674 0.553819 TTATTCCATGGTTCCCCGGG 59.446 55.000 15.80 15.80 0.00 5.73
667 675 2.675658 ATTATTCCATGGTTCCCCGG 57.324 50.000 12.58 0.00 0.00 5.73
699 708 6.778559 GGTTTCTCCTTCCTATAAGAGCTCTA 59.221 42.308 18.59 6.01 0.00 2.43
723 733 3.526931 TTTAAGCCTGTCAGATCGAGG 57.473 47.619 0.00 0.00 0.00 4.63
731 741 5.482908 GACTCAGAAGATTTAAGCCTGTCA 58.517 41.667 0.00 0.00 0.00 3.58
734 744 5.096443 AGGACTCAGAAGATTTAAGCCTG 57.904 43.478 0.00 0.00 0.00 4.85
747 757 1.362584 TCCATTCCAGGAGGACTCAGA 59.637 52.381 1.32 0.00 45.73 3.27
795 850 2.930826 AGCTCCGTCAAAAAGAGGAA 57.069 45.000 0.00 0.00 34.03 3.36
821 876 2.654877 GGTGGACTCTTCGGCGAA 59.345 61.111 22.33 22.33 0.00 4.70
824 879 1.153881 GTACGGTGGACTCTTCGGC 60.154 63.158 0.00 0.00 0.00 5.54
827 882 0.816373 GGAGGTACGGTGGACTCTTC 59.184 60.000 0.00 0.00 0.00 2.87
830 885 1.340405 TGTAGGAGGTACGGTGGACTC 60.340 57.143 0.00 0.00 33.87 3.36
846 935 7.113658 ACAGTACTAGGATTTGTCCATGTAG 57.886 40.000 0.00 0.00 0.00 2.74
847 936 8.777578 ATACAGTACTAGGATTTGTCCATGTA 57.222 34.615 0.00 0.00 0.00 2.29
952 1070 1.201181 GCGCCACATTGTTATGGTTGA 59.799 47.619 0.00 0.00 38.34 3.18
977 1112 4.443913 TGGAGATACGATCGTTTTGTGA 57.556 40.909 27.88 7.42 0.00 3.58
1001 1136 3.446442 ACTTTGATGGAGCCAATGAGT 57.554 42.857 0.00 0.00 0.00 3.41
1057 1200 6.570571 CGAACTTCATCTCTCAACCTCAACTA 60.571 42.308 0.00 0.00 0.00 2.24
1098 1241 3.791586 GGCTCTCCTCCACCTGCC 61.792 72.222 0.00 0.00 0.00 4.85
1120 1263 1.846124 GAACTGGTCCCTCCACCCA 60.846 63.158 0.00 0.00 41.93 4.51
1162 1305 1.447489 GGAGACGAGTCGGACGAGA 60.447 63.158 18.30 0.00 34.09 4.04
1256 1399 2.584673 CCTGCTCGAGGAAGAAGGA 58.415 57.895 15.58 0.00 44.11 3.36
1312 1455 4.650734 TCAACATTCAACAGTAGGCATGA 58.349 39.130 0.00 0.00 0.00 3.07
1417 1582 3.764466 CGCCTCCGACAGCTCCTT 61.764 66.667 0.00 0.00 36.29 3.36
1424 1589 3.680786 CACACTCCGCCTCCGACA 61.681 66.667 0.00 0.00 36.29 4.35
1438 1603 1.191489 TTCCTCATCTGGGTCGCACA 61.191 55.000 0.00 0.00 0.00 4.57
1444 1609 1.577736 CTCACCTTCCTCATCTGGGT 58.422 55.000 0.00 0.00 0.00 4.51
1446 1611 1.761784 CTCCTCACCTTCCTCATCTGG 59.238 57.143 0.00 0.00 0.00 3.86
1589 1818 7.734942 ACAATTTCAAGAAGCTCCCAAATTTA 58.265 30.769 0.00 0.00 0.00 1.40
1601 1857 4.846137 CCGCGAACTTACAATTTCAAGAAG 59.154 41.667 8.23 0.00 0.00 2.85
1647 1903 7.201299 CGTACTCTGTTTCCTGTTCGTATAAAC 60.201 40.741 0.00 0.00 0.00 2.01
1652 1908 3.610114 GCGTACTCTGTTTCCTGTTCGTA 60.610 47.826 0.00 0.00 0.00 3.43
1661 1917 2.904915 GCTTGTTGCGTACTCTGTTTC 58.095 47.619 0.00 0.00 0.00 2.78
1719 1979 1.337447 GCAGGTCCAAGCGTACAGTTA 60.337 52.381 0.00 0.00 0.00 2.24
1732 1992 0.686112 AGACTAGGCTCTGCAGGTCC 60.686 60.000 15.13 14.93 0.00 4.46
1744 2004 2.738587 TGGGCTGAGTAGAGACTAGG 57.261 55.000 0.00 0.00 35.45 3.02
1764 2028 1.972795 AGCTACGACTAACCAACCCAA 59.027 47.619 0.00 0.00 0.00 4.12
1802 2145 8.034313 TGATCTTGGCCAAGTTATAAGACTAT 57.966 34.615 37.97 23.16 39.38 2.12
1804 2147 6.313519 TGATCTTGGCCAAGTTATAAGACT 57.686 37.500 37.97 16.43 39.38 3.24
1812 2155 4.340381 GCTATCAATGATCTTGGCCAAGTT 59.660 41.667 37.97 32.07 39.38 2.66
1844 2187 8.361139 AGCGTGTAAGCTCTAGATGTAAATATT 58.639 33.333 0.00 0.00 45.67 1.28
1845 2188 7.887381 AGCGTGTAAGCTCTAGATGTAAATAT 58.113 34.615 0.00 0.00 45.67 1.28
1847 2190 6.150396 AGCGTGTAAGCTCTAGATGTAAAT 57.850 37.500 0.00 0.00 45.67 1.40
1848 2191 5.578005 AGCGTGTAAGCTCTAGATGTAAA 57.422 39.130 0.00 0.00 45.67 2.01
1876 2253 1.661463 TCTTCAGGATCTTGGCCAGT 58.339 50.000 5.11 0.00 0.00 4.00
1974 2351 0.608640 GGACTATGGCCGGACTATGG 59.391 60.000 9.82 5.11 0.00 2.74
1975 2352 1.273606 CTGGACTATGGCCGGACTATG 59.726 57.143 9.82 0.00 33.45 2.23
1976 2353 1.633774 CTGGACTATGGCCGGACTAT 58.366 55.000 9.82 2.68 33.45 2.12
1977 2354 0.469331 CCTGGACTATGGCCGGACTA 60.469 60.000 9.82 0.00 33.45 2.59
1978 2355 1.762460 CCTGGACTATGGCCGGACT 60.762 63.158 9.82 0.00 33.45 3.85
1979 2356 2.822399 CCTGGACTATGGCCGGAC 59.178 66.667 5.05 0.56 33.45 4.79
1980 2357 3.161450 GCCTGGACTATGGCCGGA 61.161 66.667 5.05 0.00 43.11 5.14
2163 5312 2.438795 GGCCACCAAACAGCCCTA 59.561 61.111 0.00 0.00 41.00 3.53
2183 5332 4.547905 CGCCCGTACGCAGACGAT 62.548 66.667 10.49 0.00 45.82 3.73
2366 5519 2.117206 ACAGGATTTTGCCCGGCA 59.883 55.556 8.43 8.43 36.47 5.69
2416 5573 3.837731 TCTCTCTCTCTCTCTCACAGACA 59.162 47.826 0.00 0.00 0.00 3.41
2424 5581 3.846588 ACCTGAACTCTCTCTCTCTCTCT 59.153 47.826 0.00 0.00 0.00 3.10
2425 5590 3.941483 CACCTGAACTCTCTCTCTCTCTC 59.059 52.174 0.00 0.00 0.00 3.20
2440 5605 0.411452 AGCTCTCCTCCTCACCTGAA 59.589 55.000 0.00 0.00 0.00 3.02
2462 5627 3.419759 CGTGTGGTTGCCGTAGCC 61.420 66.667 0.00 0.00 38.69 3.93
2467 5632 2.631428 CTTGTCGTGTGGTTGCCG 59.369 61.111 0.00 0.00 0.00 5.69
2472 5637 0.669318 CCGTATGCTTGTCGTGTGGT 60.669 55.000 0.00 0.00 0.00 4.16
2473 5638 1.358725 CCCGTATGCTTGTCGTGTGG 61.359 60.000 0.00 0.00 0.00 4.17
2475 5640 1.079405 CCCCGTATGCTTGTCGTGT 60.079 57.895 0.00 0.00 0.00 4.49
2476 5641 2.461110 GCCCCGTATGCTTGTCGTG 61.461 63.158 0.00 0.00 0.00 4.35
2477 5642 2.125269 GCCCCGTATGCTTGTCGT 60.125 61.111 0.00 0.00 0.00 4.34
2478 5643 3.261951 CGCCCCGTATGCTTGTCG 61.262 66.667 0.00 0.00 0.00 4.35
2481 5646 2.731691 ATAGCCGCCCCGTATGCTTG 62.732 60.000 0.00 0.00 35.34 4.01
2482 5647 2.052047 AATAGCCGCCCCGTATGCTT 62.052 55.000 0.00 0.00 35.34 3.91
2483 5648 2.450479 GAATAGCCGCCCCGTATGCT 62.450 60.000 0.00 0.00 37.84 3.79
2484 5649 2.032071 AATAGCCGCCCCGTATGC 59.968 61.111 0.00 0.00 0.00 3.14
2485 5650 1.375523 GGAATAGCCGCCCCGTATG 60.376 63.158 0.00 0.00 0.00 2.39
2486 5651 3.066198 GGAATAGCCGCCCCGTAT 58.934 61.111 0.00 0.00 0.00 3.06
2495 5660 3.421728 AAGGGCAGCCGGAATAGCC 62.422 63.158 5.05 12.28 46.28 3.93
2496 5661 1.894282 GAAGGGCAGCCGGAATAGC 60.894 63.158 5.05 1.81 0.00 2.97
2497 5662 0.109342 ATGAAGGGCAGCCGGAATAG 59.891 55.000 5.05 0.00 0.00 1.73
2498 5663 0.108585 GATGAAGGGCAGCCGGAATA 59.891 55.000 5.05 0.00 0.00 1.75
2500 5665 2.272146 GATGAAGGGCAGCCGGAA 59.728 61.111 5.05 0.00 0.00 4.30
2588 5879 3.499737 CGAACACGGCCTCCATGC 61.500 66.667 0.00 0.00 0.00 4.06
2620 5911 1.466025 TTCCTCGTGCACGGGTTAGT 61.466 55.000 35.06 0.00 38.37 2.24
2623 5914 2.030562 CTTCCTCGTGCACGGGTT 59.969 61.111 35.06 0.00 38.37 4.11
2654 5945 5.046087 TCTGTTGACATGGAAGTCATCTCAT 60.046 40.000 0.00 0.00 46.90 2.90
2665 5956 0.325933 CCCTGCTCTGTTGACATGGA 59.674 55.000 0.00 0.00 0.00 3.41
2685 5976 1.405121 GCGACGGTGTTCCTAAGGATT 60.405 52.381 0.00 0.00 0.00 3.01
2709 6000 2.204136 TCCCTCATGGCCACCAGT 60.204 61.111 8.16 0.00 36.75 4.00
2739 6030 3.307906 TGCCCGTACGTGGAGCTT 61.308 61.111 22.13 0.00 0.00 3.74
2916 9275 3.123804 CGTATCATATTATCTGGCGCCC 58.876 50.000 26.77 6.44 0.00 6.13
2958 9317 5.608449 AGACCTAGCCGTATCCATAAAAAC 58.392 41.667 0.00 0.00 0.00 2.43
2968 9374 6.125029 TCACTAAACTAAGACCTAGCCGTAT 58.875 40.000 0.00 0.00 0.00 3.06
2971 9377 4.978083 TCACTAAACTAAGACCTAGCCG 57.022 45.455 0.00 0.00 0.00 5.52
2996 9402 8.527810 TGGTTTTCTGTTTCTTTCTTACATGTT 58.472 29.630 2.30 0.00 0.00 2.71
2997 9403 8.062065 TGGTTTTCTGTTTCTTTCTTACATGT 57.938 30.769 2.69 2.69 0.00 3.21
2998 9404 8.925161 TTGGTTTTCTGTTTCTTTCTTACATG 57.075 30.769 0.00 0.00 0.00 3.21
2999 9405 9.936759 TTTTGGTTTTCTGTTTCTTTCTTACAT 57.063 25.926 0.00 0.00 0.00 2.29
3000 9406 9.765795 TTTTTGGTTTTCTGTTTCTTTCTTACA 57.234 25.926 0.00 0.00 0.00 2.41
3027 9433 6.446318 ACATTGAGATACGTGCACAATTTTT 58.554 32.000 18.64 0.00 0.00 1.94
3028 9434 6.012658 ACATTGAGATACGTGCACAATTTT 57.987 33.333 18.64 0.00 0.00 1.82
3029 9435 5.627499 ACATTGAGATACGTGCACAATTT 57.373 34.783 18.64 4.77 0.00 1.82
3030 9436 6.593770 TCTTACATTGAGATACGTGCACAATT 59.406 34.615 18.64 2.52 0.00 2.32
3031 9437 6.106003 TCTTACATTGAGATACGTGCACAAT 58.894 36.000 18.64 9.62 0.00 2.71
3032 9438 5.474825 TCTTACATTGAGATACGTGCACAA 58.525 37.500 18.64 4.27 0.00 3.33
3033 9439 5.066968 TCTTACATTGAGATACGTGCACA 57.933 39.130 18.64 0.00 0.00 4.57
3034 9440 5.980116 AGATCTTACATTGAGATACGTGCAC 59.020 40.000 6.82 6.82 34.13 4.57
3044 9450 7.381948 GCTGTACTCATGAGATCTTACATTGAG 59.618 40.741 29.27 14.34 33.01 3.02
3069 9475 2.602878 TGGTTAAGTCTCAATCGACGC 58.397 47.619 0.00 0.00 38.90 5.19
3087 9493 8.394121 GCTAAATCTTAGTTGAATGAGACTTGG 58.606 37.037 0.00 0.00 0.00 3.61
3093 9499 8.394121 GGTCTTGCTAAATCTTAGTTGAATGAG 58.606 37.037 0.00 0.00 0.00 2.90
3100 9506 8.409358 AACAATGGTCTTGCTAAATCTTAGTT 57.591 30.769 0.00 0.00 0.00 2.24
3105 9511 9.023962 TGAATAAACAATGGTCTTGCTAAATCT 57.976 29.630 0.00 0.00 0.00 2.40
3112 9518 9.638239 TTCTAAATGAATAAACAATGGTCTTGC 57.362 29.630 0.00 0.00 0.00 4.01
3171 9578 7.937394 ACATGCTACTGTTTTCCTTAAGTAAGT 59.063 33.333 0.97 0.00 0.00 2.24
3172 9579 8.324163 ACATGCTACTGTTTTCCTTAAGTAAG 57.676 34.615 0.97 0.00 0.00 2.34
3173 9580 9.211485 GTACATGCTACTGTTTTCCTTAAGTAA 57.789 33.333 0.97 0.00 0.00 2.24
3176 9583 7.743104 CAGTACATGCTACTGTTTTCCTTAAG 58.257 38.462 19.20 0.00 39.88 1.85
3217 9627 9.896263 TTTGTTTTGTTTTCTTTTACGTCTAGT 57.104 25.926 0.00 0.00 0.00 2.57
3256 9668 1.051008 AGACGGACGGTAGGGTTTTT 58.949 50.000 0.00 0.00 0.00 1.94
3262 9674 0.108472 GGGAAAAGACGGACGGTAGG 60.108 60.000 0.00 0.00 0.00 3.18
3266 9678 1.012486 CGAAGGGAAAAGACGGACGG 61.012 60.000 0.00 0.00 0.00 4.79
3291 9703 1.860484 GAAGCTTGGGTGAGCAGTGC 61.860 60.000 2.10 7.13 45.12 4.40
3300 9712 2.435437 AGTGCAATTTTGAAGCTTGGGT 59.565 40.909 2.10 0.00 0.00 4.51
3303 9715 5.917541 ATTCAGTGCAATTTTGAAGCTTG 57.082 34.783 2.10 0.00 34.64 4.01
3310 9722 4.050553 ACCGTCAATTCAGTGCAATTTTG 58.949 39.130 0.00 0.00 0.00 2.44
3326 9738 3.071479 GTGCTTCTTTCCATTACCGTCA 58.929 45.455 0.00 0.00 0.00 4.35
3342 9754 4.873810 TGGCGTGTGCAGGTGCTT 62.874 61.111 3.18 0.00 45.35 3.91
3374 9786 9.412460 CAGGTAAATGGCCATTGATACATATAT 57.588 33.333 31.28 13.87 0.00 0.86
3377 9789 5.476599 GCAGGTAAATGGCCATTGATACATA 59.523 40.000 31.28 15.74 0.00 2.29
3378 9790 4.281688 GCAGGTAAATGGCCATTGATACAT 59.718 41.667 31.28 23.47 0.00 2.29
3379 9791 3.636300 GCAGGTAAATGGCCATTGATACA 59.364 43.478 31.28 11.68 0.00 2.29
3380 9792 3.304659 CGCAGGTAAATGGCCATTGATAC 60.305 47.826 31.28 26.82 0.00 2.24
3381 9793 2.884012 CGCAGGTAAATGGCCATTGATA 59.116 45.455 31.28 17.95 0.00 2.15
3382 9794 1.682854 CGCAGGTAAATGGCCATTGAT 59.317 47.619 31.28 19.03 0.00 2.57
3383 9795 1.102154 CGCAGGTAAATGGCCATTGA 58.898 50.000 31.28 22.16 0.00 2.57
3384 9796 0.528249 GCGCAGGTAAATGGCCATTG 60.528 55.000 31.28 19.88 0.00 2.82
3385 9797 1.675720 GGCGCAGGTAAATGGCCATT 61.676 55.000 25.73 25.73 43.23 3.16
3393 9805 5.483685 AGATATAATCTGGCGCAGGTAAA 57.516 39.130 10.83 0.00 38.44 2.01
3398 9810 4.733850 TCGTAAGATATAATCTGGCGCAG 58.266 43.478 10.83 4.99 45.01 5.18
3399 9811 4.776795 TCGTAAGATATAATCTGGCGCA 57.223 40.909 10.83 0.00 45.01 6.09
3507 9921 2.780595 CGGATGGGACGCTCAATTT 58.219 52.632 0.00 0.00 0.00 1.82
3524 9980 4.410400 AAGGGCGGAAAGGAGGCG 62.410 66.667 0.00 0.00 0.00 5.52
3553 10009 3.831323 TGTGATCAGGTGGACATTGTTT 58.169 40.909 0.00 0.00 0.00 2.83
3555 10011 3.507162 TTGTGATCAGGTGGACATTGT 57.493 42.857 0.00 0.00 0.00 2.71
3576 10034 1.623811 GGGTGTCCACATCTACACACT 59.376 52.381 7.78 0.00 44.79 3.55
3577 10035 1.338769 GGGGTGTCCACATCTACACAC 60.339 57.143 7.78 3.79 46.95 3.82
3578 10036 0.981183 GGGGTGTCCACATCTACACA 59.019 55.000 7.78 0.00 46.22 3.72
3579 10037 0.981183 TGGGGTGTCCACATCTACAC 59.019 55.000 0.00 0.00 44.19 2.90
3580 10038 3.485214 TGGGGTGTCCACATCTACA 57.515 52.632 0.00 0.00 41.46 2.74
3661 11831 0.811616 GGAAGGTGGCATGCGTAGAG 60.812 60.000 12.44 0.00 0.00 2.43
3712 11882 8.793592 GTTTAGACACTTATTTTGGGACAGAAT 58.206 33.333 0.00 0.00 45.34 2.40
3713 11883 7.996644 AGTTTAGACACTTATTTTGGGACAGAA 59.003 33.333 0.00 0.00 42.39 3.02
3778 12313 6.669631 ACTCCCTTCGTCCCAAAATAAATAT 58.330 36.000 0.00 0.00 0.00 1.28
3790 12325 5.107824 GTCATTTTAGTACTCCCTTCGTCC 58.892 45.833 0.00 0.00 0.00 4.79
3800 12335 6.037172 GCCATCGAATGTGTCATTTTAGTACT 59.963 38.462 0.00 0.00 0.00 2.73
3836 12371 7.846592 GTCAGATGCTATTTTTAGCTAACGTTC 59.153 37.037 2.82 0.00 43.20 3.95
3837 12372 7.549488 AGTCAGATGCTATTTTTAGCTAACGTT 59.451 33.333 5.45 5.88 43.20 3.99
3839 12374 7.470289 AGTCAGATGCTATTTTTAGCTAACG 57.530 36.000 5.45 0.00 43.20 3.18
3854 12389 5.109903 ACCGAACAGTAAATAGTCAGATGC 58.890 41.667 0.00 0.00 0.00 3.91
3901 12545 5.372373 GGTCCTGCTAGCAATCTTAAATCT 58.628 41.667 19.86 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.