Multiple sequence alignment - TraesCS7D01G541200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G541200 chr7D 100.000 4098 0 0 1 4098 630712262 630716359 0.000000e+00 7568.0
1 TraesCS7D01G541200 chr7D 92.572 2006 113 21 623 2606 631023724 631025715 0.000000e+00 2846.0
2 TraesCS7D01G541200 chr7D 92.490 1691 97 20 623 2294 630328358 630326679 0.000000e+00 2392.0
3 TraesCS7D01G541200 chr7D 92.866 827 56 2 2280 3105 630325753 630324929 0.000000e+00 1197.0
4 TraesCS7D01G541200 chr7D 89.437 871 54 10 2608 3450 631034478 631035338 0.000000e+00 1064.0
5 TraesCS7D01G541200 chr7D 88.565 892 66 13 40 922 631019825 631020689 0.000000e+00 1050.0
6 TraesCS7D01G541200 chr7D 79.277 719 101 33 2536 3240 638682250 638681566 3.730000e-125 459.0
7 TraesCS7D01G541200 chr7D 89.041 365 29 9 3737 4098 27617014 27616658 3.760000e-120 442.0
8 TraesCS7D01G541200 chr7D 87.052 363 25 3 3311 3672 630324781 630324440 1.380000e-104 390.0
9 TraesCS7D01G541200 chr7D 88.400 250 29 0 2287 2536 631613084 631613333 6.660000e-78 302.0
10 TraesCS7D01G541200 chr7D 89.231 195 20 1 3543 3736 631035364 631035558 4.090000e-60 243.0
11 TraesCS7D01G541200 chr7D 92.063 63 2 2 3145 3206 630324921 630324861 7.300000e-13 86.1
12 TraesCS7D01G541200 chr7D 100.000 38 0 0 3700 3737 630324439 630324402 2.040000e-08 71.3
13 TraesCS7D01G541200 chr7A 94.042 2014 101 13 527 2536 726859976 726857978 0.000000e+00 3037.0
14 TraesCS7D01G541200 chr7A 85.029 688 83 17 2567 3243 726857921 726857243 0.000000e+00 682.0
15 TraesCS7D01G541200 chr7B 91.347 1745 95 15 366 2104 733360122 733358428 0.000000e+00 2335.0
16 TraesCS7D01G541200 chr7B 86.190 2223 194 48 357 2536 733749777 733751929 0.000000e+00 2300.0
17 TraesCS7D01G541200 chr7B 86.422 1635 150 36 623 2219 733787552 733789152 0.000000e+00 1724.0
18 TraesCS7D01G541200 chr7B 87.234 987 71 14 2779 3737 733334236 733333277 0.000000e+00 1074.0
19 TraesCS7D01G541200 chr7B 95.022 462 23 0 2101 2562 733358172 733357711 0.000000e+00 726.0
20 TraesCS7D01G541200 chr7B 86.199 442 53 7 2797 3234 733789958 733790395 4.790000e-129 472.0
21 TraesCS7D01G541200 chr7B 85.973 442 54 8 2797 3234 733752328 733752765 2.230000e-127 466.0
22 TraesCS7D01G541200 chr7B 91.200 250 22 0 2287 2536 733789310 733789559 1.410000e-89 340.0
23 TraesCS7D01G541200 chr7B 86.667 300 16 5 40 339 733360671 733360396 1.110000e-80 311.0
24 TraesCS7D01G541200 chr7B 90.558 233 20 2 2550 2781 733343117 733342886 1.430000e-79 307.0
25 TraesCS7D01G541200 chr7B 90.830 229 19 2 2554 2781 733348257 733348030 5.150000e-79 305.0
26 TraesCS7D01G541200 chr7B 90.393 229 20 2 2554 2781 733353403 733353176 2.390000e-77 300.0
27 TraesCS7D01G541200 chr7B 85.333 300 20 7 40 339 733749511 733749786 5.180000e-74 289.0
28 TraesCS7D01G541200 chr2B 83.093 1041 135 36 1030 2057 412990217 412991229 0.000000e+00 909.0
29 TraesCS7D01G541200 chr2B 85.153 229 28 2 1001 1223 413062381 413062609 3.190000e-56 230.0
30 TraesCS7D01G541200 chr2B 88.776 98 11 0 2848 2945 412992062 412992159 2.000000e-23 121.0
31 TraesCS7D01G541200 chr2D 81.020 1196 165 45 1030 2219 347791948 347793087 0.000000e+00 894.0
32 TraesCS7D01G541200 chr2A 80.952 1197 167 42 1030 2219 461389363 461390505 0.000000e+00 891.0
33 TraesCS7D01G541200 chr2A 90.305 361 25 6 3736 4095 429646497 429646848 8.020000e-127 464.0
34 TraesCS7D01G541200 chr3D 90.556 360 26 5 3737 4095 594540457 594540105 1.720000e-128 470.0
35 TraesCS7D01G541200 chr4B 89.617 366 30 8 3737 4098 547574322 547573961 3.730000e-125 459.0
36 TraesCS7D01G541200 chr5D 89.589 365 26 9 3736 4098 515802239 515801885 1.740000e-123 453.0
37 TraesCS7D01G541200 chr5D 88.981 363 28 10 3734 4095 410304031 410304382 4.860000e-119 438.0
38 TraesCS7D01G541200 chr5D 88.618 369 29 9 3736 4098 135757112 135756751 1.750000e-118 436.0
39 TraesCS7D01G541200 chr1B 88.705 363 32 6 3737 4098 626852272 626851918 6.290000e-118 435.0
40 TraesCS7D01G541200 chr3A 88.643 361 33 6 3737 4095 24412677 24413031 2.260000e-117 433.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G541200 chr7D 630712262 630716359 4097 False 7568.000000 7568 100.000000 1 4098 1 chr7D.!!$F1 4097
1 TraesCS7D01G541200 chr7D 631019825 631025715 5890 False 1948.000000 2846 90.568500 40 2606 2 chr7D.!!$F3 2566
2 TraesCS7D01G541200 chr7D 630324402 630328358 3956 True 827.280000 2392 92.894200 623 3737 5 chr7D.!!$R3 3114
3 TraesCS7D01G541200 chr7D 631034478 631035558 1080 False 653.500000 1064 89.334000 2608 3736 2 chr7D.!!$F4 1128
4 TraesCS7D01G541200 chr7D 638681566 638682250 684 True 459.000000 459 79.277000 2536 3240 1 chr7D.!!$R2 704
5 TraesCS7D01G541200 chr7A 726857243 726859976 2733 True 1859.500000 3037 89.535500 527 3243 2 chr7A.!!$R1 2716
6 TraesCS7D01G541200 chr7B 733357711 733360671 2960 True 1124.000000 2335 91.012000 40 2562 3 chr7B.!!$R5 2522
7 TraesCS7D01G541200 chr7B 733333277 733334236 959 True 1074.000000 1074 87.234000 2779 3737 1 chr7B.!!$R1 958
8 TraesCS7D01G541200 chr7B 733749511 733752765 3254 False 1018.333333 2300 85.832000 40 3234 3 chr7B.!!$F1 3194
9 TraesCS7D01G541200 chr7B 733787552 733790395 2843 False 845.333333 1724 87.940333 623 3234 3 chr7B.!!$F2 2611
10 TraesCS7D01G541200 chr2B 412990217 412992159 1942 False 515.000000 909 85.934500 1030 2945 2 chr2B.!!$F2 1915
11 TraesCS7D01G541200 chr2D 347791948 347793087 1139 False 894.000000 894 81.020000 1030 2219 1 chr2D.!!$F1 1189
12 TraesCS7D01G541200 chr2A 461389363 461390505 1142 False 891.000000 891 80.952000 1030 2219 1 chr2A.!!$F2 1189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 927 0.179097 TATTGCGCATCTACGTGCCA 60.179 50.0 12.75 0.0 42.06 4.92 F
1809 5455 0.034198 TTGTCGACGGAGGCATTTCA 59.966 50.0 11.62 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 7377 0.510790 TTGTCGTTGCTGTATGCGTG 59.489 50.0 0.0 0.0 46.63 5.34 R
3746 8894 0.034896 TTCCACCAAACCTCTCGCTC 59.965 55.0 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.970332 ATATGCAGAGGCCGTGGA 58.030 55.556 9.89 7.48 40.13 4.02
18 19 2.456627 ATATGCAGAGGCCGTGGAT 58.543 52.632 17.17 17.17 40.13 3.41
19 20 1.644509 ATATGCAGAGGCCGTGGATA 58.355 50.000 19.75 19.75 40.13 2.59
20 21 0.679505 TATGCAGAGGCCGTGGATAC 59.320 55.000 15.43 0.00 40.13 2.24
21 22 1.337384 ATGCAGAGGCCGTGGATACA 61.337 55.000 12.52 1.83 42.67 2.29
22 23 1.337384 TGCAGAGGCCGTGGATACAT 61.337 55.000 9.89 0.00 45.78 2.29
23 24 3.242705 TGCAGAGGCCGTGGATACATC 62.243 57.143 9.89 0.00 45.78 3.06
64 65 9.739276 AAAGAGTGATTGTTACTTCATATGGAA 57.261 29.630 2.13 0.00 0.00 3.53
76 77 6.674694 CTTCATATGGAAGTTCAGTCTTGG 57.325 41.667 5.01 0.00 46.49 3.61
99 100 1.741706 CACTGTGGCAGGATGATTCAC 59.258 52.381 0.00 0.00 39.69 3.18
104 105 0.590195 GGCAGGATGATTCACGCATC 59.410 55.000 0.00 0.00 39.69 3.91
165 166 4.103311 AGGAGGGTAATTTCAGCAGTATCC 59.897 45.833 0.00 0.00 0.00 2.59
181 182 1.485294 ATCCGTAGTTGGGGTGTGCA 61.485 55.000 0.00 0.00 0.00 4.57
182 183 1.964373 CCGTAGTTGGGGTGTGCAC 60.964 63.158 10.75 10.75 0.00 4.57
194 195 2.977405 GTGTGCACCTTCTCATTGTC 57.023 50.000 15.69 0.00 0.00 3.18
195 196 2.498167 GTGTGCACCTTCTCATTGTCT 58.502 47.619 15.69 0.00 0.00 3.41
196 197 2.481952 GTGTGCACCTTCTCATTGTCTC 59.518 50.000 15.69 0.00 0.00 3.36
197 198 2.104622 TGTGCACCTTCTCATTGTCTCA 59.895 45.455 15.69 0.00 0.00 3.27
198 199 3.244665 TGTGCACCTTCTCATTGTCTCAT 60.245 43.478 15.69 0.00 0.00 2.90
199 200 3.755378 GTGCACCTTCTCATTGTCTCATT 59.245 43.478 5.22 0.00 0.00 2.57
200 201 3.754850 TGCACCTTCTCATTGTCTCATTG 59.245 43.478 0.00 0.00 0.00 2.82
201 202 3.755378 GCACCTTCTCATTGTCTCATTGT 59.245 43.478 0.00 0.00 0.00 2.71
202 203 4.142730 GCACCTTCTCATTGTCTCATTGTC 60.143 45.833 0.00 0.00 0.00 3.18
203 204 4.999311 CACCTTCTCATTGTCTCATTGTCA 59.001 41.667 0.00 0.00 0.00 3.58
204 205 5.121925 CACCTTCTCATTGTCTCATTGTCAG 59.878 44.000 0.00 0.00 0.00 3.51
205 206 5.221803 ACCTTCTCATTGTCTCATTGTCAGT 60.222 40.000 0.00 0.00 0.00 3.41
206 207 6.014242 ACCTTCTCATTGTCTCATTGTCAGTA 60.014 38.462 0.00 0.00 0.00 2.74
207 208 6.312426 CCTTCTCATTGTCTCATTGTCAGTAC 59.688 42.308 0.00 0.00 0.00 2.73
208 209 5.724328 TCTCATTGTCTCATTGTCAGTACC 58.276 41.667 0.00 0.00 0.00 3.34
209 210 5.481824 TCTCATTGTCTCATTGTCAGTACCT 59.518 40.000 0.00 0.00 0.00 3.08
210 211 5.724328 TCATTGTCTCATTGTCAGTACCTC 58.276 41.667 0.00 0.00 0.00 3.85
275 276 4.217118 AGTTGAGGATTGAAATGTGCACTC 59.783 41.667 19.41 8.06 0.00 3.51
291 292 7.187824 TGTGCACTCCTCTCTATAAGAAAAT 57.812 36.000 19.41 0.00 32.23 1.82
328 329 1.541379 TTGTAGCTCAGCGGTGTCTA 58.459 50.000 15.22 13.69 0.00 2.59
383 631 7.073208 TCTGTATATCCACCTAACTCCAATGA 58.927 38.462 0.00 0.00 0.00 2.57
472 725 5.151297 TGGATCTTTGAAAATGCCCTTTC 57.849 39.130 0.00 1.60 36.11 2.62
513 766 0.681733 AGCACGTGAGTTGGTCAGAT 59.318 50.000 22.23 0.00 46.40 2.90
523 776 2.501723 AGTTGGTCAGATACGCCAGAAT 59.498 45.455 0.00 0.00 33.41 2.40
524 777 3.704566 AGTTGGTCAGATACGCCAGAATA 59.295 43.478 0.00 0.00 33.41 1.75
529 782 6.119536 TGGTCAGATACGCCAGAATAAAAAT 58.880 36.000 0.00 0.00 0.00 1.82
530 783 7.276658 TGGTCAGATACGCCAGAATAAAAATA 58.723 34.615 0.00 0.00 0.00 1.40
587 841 5.182950 TGTGTTCAAAAGTTGTGACAGTGAT 59.817 36.000 0.00 0.00 31.97 3.06
605 859 4.892934 AGTGATAACAAGTGGGCAAAAAGA 59.107 37.500 0.00 0.00 0.00 2.52
660 914 5.851047 TCATCATGCTGATTAGTATTGCG 57.149 39.130 0.00 0.00 34.28 4.85
673 927 0.179097 TATTGCGCATCTACGTGCCA 60.179 50.000 12.75 0.00 42.06 4.92
675 929 1.428370 TTGCGCATCTACGTGCCATC 61.428 55.000 12.75 0.00 42.06 3.51
678 932 0.578683 CGCATCTACGTGCCATCAAG 59.421 55.000 0.00 0.00 42.06 3.02
680 934 1.328680 GCATCTACGTGCCATCAAGTG 59.671 52.381 0.00 0.00 39.18 3.16
907 4536 5.121925 CCACTTGACTGATGTTCTCTGAATG 59.878 44.000 0.00 0.00 0.00 2.67
914 4544 4.582869 TGATGTTCTCTGAATGGTTCCAG 58.417 43.478 0.00 0.00 0.00 3.86
983 4620 4.929146 AAATCAGCACCTAGGTACCTTT 57.071 40.909 22.11 6.61 0.00 3.11
993 4630 6.527423 CACCTAGGTACCTTTGTTTCAACTA 58.473 40.000 22.11 0.00 0.00 2.24
999 4636 6.715264 AGGTACCTTTGTTTCAACTATCAAGG 59.285 38.462 9.21 0.00 0.00 3.61
1080 4717 2.978018 GCAGTTGTACCTTGCCGGC 61.978 63.158 22.73 22.73 35.61 6.13
1143 4780 1.745232 TATCCGTCATGTTTGTGGGC 58.255 50.000 0.00 0.00 0.00 5.36
1634 5280 2.515523 GCTCGGGCATCACAGCAT 60.516 61.111 0.00 0.00 38.54 3.79
1684 5330 1.623811 GTCTACAAGCTTGGTCTGGGA 59.376 52.381 29.18 14.30 0.00 4.37
1759 5405 2.591923 CTGGCTCTCTACATCAGGCTA 58.408 52.381 0.00 0.00 33.90 3.93
1780 5426 1.199327 TCTCCGTCTTGTAAGAGCACG 59.801 52.381 0.00 0.00 35.32 5.34
1809 5455 0.034198 TTGTCGACGGAGGCATTTCA 59.966 50.000 11.62 0.00 0.00 2.69
1817 5463 1.740380 CGGAGGCATTTCACGACATCT 60.740 52.381 0.00 0.00 0.00 2.90
1876 5522 3.631686 TGGTTTGGTGAGTTTGATGTCTG 59.368 43.478 0.00 0.00 0.00 3.51
1878 5524 4.498009 GGTTTGGTGAGTTTGATGTCTGTG 60.498 45.833 0.00 0.00 0.00 3.66
1903 5554 4.672413 GCTATATGTCGCAAGTGCAAATTC 59.328 41.667 3.87 0.00 42.21 2.17
1911 5562 2.927871 GCAAGTGCAAATTCGCCATCTT 60.928 45.455 0.00 0.00 41.59 2.40
2151 6070 8.196802 TGATAGTAACATCCAGTTGAATTTCG 57.803 34.615 0.00 0.00 41.50 3.46
2187 6106 4.715297 ACTATCTCGTTGGTATTCAGGGTT 59.285 41.667 0.00 0.00 0.00 4.11
2409 7356 3.508762 TCGGTTTCTCTTGCTATCGTTC 58.491 45.455 0.00 0.00 0.00 3.95
2430 7377 2.203337 TGCGCAATCTATGGGGGC 60.203 61.111 8.16 0.00 42.02 5.80
2581 7575 4.786507 TCATGCGTGCTGAAAATATATGC 58.213 39.130 0.00 0.00 0.00 3.14
2636 7632 1.471684 GGCTGTGGCTTTCAGAAGATG 59.528 52.381 8.54 0.00 38.73 2.90
2642 7638 2.376518 TGGCTTTCAGAAGATGGGTTCT 59.623 45.455 0.00 0.00 37.25 3.01
2699 7697 1.643868 CGGCGGCTCTATGTTTTGCA 61.644 55.000 7.61 0.00 0.00 4.08
2873 7976 1.064017 GGGCTGTGGATGGGAATAACA 60.064 52.381 0.00 0.00 0.00 2.41
2882 7985 1.378531 TGGGAATAACATGCGCACTC 58.621 50.000 14.90 0.00 0.00 3.51
2982 8088 2.154963 TGTTTCGTTCGCTTCTCATTCG 59.845 45.455 0.00 0.00 0.00 3.34
3086 8193 2.842645 TACTTCCCTACCTCTGGACC 57.157 55.000 0.00 0.00 0.00 4.46
3096 8203 1.043116 CCTCTGGACCTGGCGACATA 61.043 60.000 0.00 0.00 41.51 2.29
3139 8250 7.115947 GCATATTTTTCTATGCCAAAGAGATGC 59.884 37.037 5.03 0.00 45.35 3.91
3161 8272 2.095372 GCAGGGAAATAAGGAAACGACG 59.905 50.000 0.00 0.00 0.00 5.12
3164 8275 4.634443 CAGGGAAATAAGGAAACGACGAAT 59.366 41.667 0.00 0.00 0.00 3.34
3165 8276 5.123344 CAGGGAAATAAGGAAACGACGAATT 59.877 40.000 0.00 0.00 0.00 2.17
3166 8277 5.123344 AGGGAAATAAGGAAACGACGAATTG 59.877 40.000 0.00 0.00 0.00 2.32
3167 8278 5.122711 GGGAAATAAGGAAACGACGAATTGA 59.877 40.000 0.00 0.00 0.00 2.57
3168 8279 6.348704 GGGAAATAAGGAAACGACGAATTGAA 60.349 38.462 0.00 0.00 0.00 2.69
3169 8280 7.248437 GGAAATAAGGAAACGACGAATTGAAT 58.752 34.615 0.00 0.00 0.00 2.57
3171 8282 8.669394 AAATAAGGAAACGACGAATTGAATTC 57.331 30.769 7.83 7.83 35.94 2.17
3207 8321 1.537202 GCTTCTTGTCCATGTCACCAC 59.463 52.381 0.00 0.00 0.00 4.16
3248 8362 9.197694 TCACGGAAATAATAAAATGTTTGTTGG 57.802 29.630 0.00 0.00 0.00 3.77
3252 8366 7.962373 GGAAATAATAAAATGTTTGTTGGCTGC 59.038 33.333 0.00 0.00 0.00 5.25
3259 8373 1.530419 TTTGTTGGCTGCCATCCGT 60.530 52.632 24.03 0.00 31.53 4.69
3332 8472 2.480555 GTCAAATCCCGCACGCAG 59.519 61.111 0.00 0.00 0.00 5.18
3402 8546 5.835280 AGACAATTCAACATGGAAAGGAAGT 59.165 36.000 0.00 0.00 0.00 3.01
3412 8556 3.143728 TGGAAAGGAAGTTAAAGCCGAC 58.856 45.455 0.00 0.00 0.00 4.79
3455 8599 4.640771 TTTTAGCAGAGTGATGAAGGGT 57.359 40.909 0.00 0.00 0.00 4.34
3490 8634 5.350504 TTCTTGGATAGCTTGAAGGAGAG 57.649 43.478 0.00 0.00 0.00 3.20
3516 8660 4.104086 TGCTCCTTTCAAGAGAATAGGGA 58.896 43.478 0.00 0.00 35.02 4.20
3518 8662 5.905331 TGCTCCTTTCAAGAGAATAGGGATA 59.095 40.000 0.00 0.00 35.02 2.59
3520 8664 7.072961 TGCTCCTTTCAAGAGAATAGGGATATT 59.927 37.037 0.00 0.00 35.02 1.28
3525 8669 9.859152 CTTTCAAGAGAATAGGGATATTTCCTT 57.141 33.333 1.99 0.00 36.54 3.36
3536 8682 4.142556 GGGATATTTCCTTCGAAAAACGCA 60.143 41.667 0.00 0.00 41.25 5.24
3568 8715 4.887071 ACGGCTATTTGATAAAATGCCTCA 59.113 37.500 18.91 0.00 35.80 3.86
3585 8732 6.254281 TGCCTCACTTTACTTTGCTTATTC 57.746 37.500 0.00 0.00 0.00 1.75
3630 8777 7.925483 TGACCAATTTTACTTTGTCCATTTGAG 59.075 33.333 0.00 0.00 0.00 3.02
3672 8820 8.608844 TTTTCACAAGTTTCTCTCTCTAATCC 57.391 34.615 0.00 0.00 0.00 3.01
3685 8833 5.598830 TCTCTCTAATCCCACACCTACAATC 59.401 44.000 0.00 0.00 0.00 2.67
3737 8885 5.827267 TCTCTCCTCTCTAATCTCACATGTG 59.173 44.000 20.18 20.18 0.00 3.21
3738 8886 5.514169 TCTCCTCTCTAATCTCACATGTGT 58.486 41.667 24.63 8.76 0.00 3.72
3739 8887 5.954752 TCTCCTCTCTAATCTCACATGTGTT 59.045 40.000 24.63 14.56 0.00 3.32
3740 8888 7.119387 TCTCCTCTCTAATCTCACATGTGTTA 58.881 38.462 24.63 14.89 0.00 2.41
3741 8889 7.284261 TCTCCTCTCTAATCTCACATGTGTTAG 59.716 40.741 24.63 22.29 0.00 2.34
3742 8890 7.119387 TCCTCTCTAATCTCACATGTGTTAGA 58.881 38.462 24.64 24.64 33.39 2.10
3743 8891 7.615757 TCCTCTCTAATCTCACATGTGTTAGAA 59.384 37.037 25.49 18.75 32.71 2.10
3744 8892 7.920151 CCTCTCTAATCTCACATGTGTTAGAAG 59.080 40.741 25.49 23.21 32.71 2.85
3745 8893 7.776107 TCTCTAATCTCACATGTGTTAGAAGG 58.224 38.462 25.49 19.06 32.71 3.46
3746 8894 6.878317 TCTAATCTCACATGTGTTAGAAGGG 58.122 40.000 24.34 15.51 32.71 3.95
3747 8895 5.762179 AATCTCACATGTGTTAGAAGGGA 57.238 39.130 24.63 3.87 32.71 4.20
3748 8896 4.808414 TCTCACATGTGTTAGAAGGGAG 57.192 45.455 24.63 11.74 0.00 4.30
3749 8897 3.055819 TCTCACATGTGTTAGAAGGGAGC 60.056 47.826 24.63 0.00 0.00 4.70
3750 8898 2.002586 CACATGTGTTAGAAGGGAGCG 58.997 52.381 18.03 0.00 0.00 5.03
3751 8899 1.899814 ACATGTGTTAGAAGGGAGCGA 59.100 47.619 0.00 0.00 0.00 4.93
3752 8900 2.093973 ACATGTGTTAGAAGGGAGCGAG 60.094 50.000 0.00 0.00 0.00 5.03
3753 8901 1.919240 TGTGTTAGAAGGGAGCGAGA 58.081 50.000 0.00 0.00 0.00 4.04
3754 8902 1.819288 TGTGTTAGAAGGGAGCGAGAG 59.181 52.381 0.00 0.00 0.00 3.20
3755 8903 1.135333 GTGTTAGAAGGGAGCGAGAGG 59.865 57.143 0.00 0.00 0.00 3.69
3757 8905 1.826096 GTTAGAAGGGAGCGAGAGGTT 59.174 52.381 0.00 0.00 45.11 3.50
3758 8906 2.233305 TAGAAGGGAGCGAGAGGTTT 57.767 50.000 0.00 0.00 45.11 3.27
3759 8907 0.610687 AGAAGGGAGCGAGAGGTTTG 59.389 55.000 0.00 0.00 45.11 2.93
3760 8908 0.391793 GAAGGGAGCGAGAGGTTTGG 60.392 60.000 0.00 0.00 45.11 3.28
3761 8909 1.128188 AAGGGAGCGAGAGGTTTGGT 61.128 55.000 0.00 0.00 45.11 3.67
3762 8910 1.376037 GGGAGCGAGAGGTTTGGTG 60.376 63.158 0.00 0.00 45.11 4.17
3763 8911 1.376037 GGAGCGAGAGGTTTGGTGG 60.376 63.158 0.00 0.00 45.11 4.61
3764 8912 1.671742 GAGCGAGAGGTTTGGTGGA 59.328 57.895 0.00 0.00 45.11 4.02
3765 8913 0.034896 GAGCGAGAGGTTTGGTGGAA 59.965 55.000 0.00 0.00 45.11 3.53
3766 8914 0.693049 AGCGAGAGGTTTGGTGGAAT 59.307 50.000 0.00 0.00 40.01 3.01
3767 8915 1.906574 AGCGAGAGGTTTGGTGGAATA 59.093 47.619 0.00 0.00 40.01 1.75
3768 8916 2.093447 AGCGAGAGGTTTGGTGGAATAG 60.093 50.000 0.00 0.00 40.01 1.73
3769 8917 2.354805 GCGAGAGGTTTGGTGGAATAGT 60.355 50.000 0.00 0.00 0.00 2.12
3770 8918 3.868754 GCGAGAGGTTTGGTGGAATAGTT 60.869 47.826 0.00 0.00 0.00 2.24
3771 8919 4.324267 CGAGAGGTTTGGTGGAATAGTTT 58.676 43.478 0.00 0.00 0.00 2.66
3772 8920 4.760204 CGAGAGGTTTGGTGGAATAGTTTT 59.240 41.667 0.00 0.00 0.00 2.43
3773 8921 5.240844 CGAGAGGTTTGGTGGAATAGTTTTT 59.759 40.000 0.00 0.00 0.00 1.94
3792 8940 3.829886 TTTTGTATTGCTTGAGCCTCG 57.170 42.857 0.00 0.00 41.18 4.63
3793 8941 2.472695 TTGTATTGCTTGAGCCTCGT 57.527 45.000 0.00 0.00 41.18 4.18
3794 8942 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
3795 8943 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
3796 8944 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
3811 8959 6.716934 CCTCGTGGGCATATATATAGAAGT 57.283 41.667 0.00 0.00 0.00 3.01
3812 8960 7.818997 CCTCGTGGGCATATATATAGAAGTA 57.181 40.000 0.00 0.00 0.00 2.24
3813 8961 7.649973 CCTCGTGGGCATATATATAGAAGTAC 58.350 42.308 0.00 0.00 0.00 2.73
3814 8962 7.284716 CCTCGTGGGCATATATATAGAAGTACA 59.715 40.741 0.00 0.00 0.00 2.90
3815 8963 8.762481 TCGTGGGCATATATATAGAAGTACAT 57.238 34.615 0.00 0.00 0.00 2.29
3816 8964 8.630037 TCGTGGGCATATATATAGAAGTACATG 58.370 37.037 0.00 0.00 0.00 3.21
3817 8965 8.630037 CGTGGGCATATATATAGAAGTACATGA 58.370 37.037 0.00 0.00 0.00 3.07
3831 8979 8.228035 AGAAGTACATGATCTACTTGGAGTAC 57.772 38.462 10.91 0.00 35.08 2.73
3832 8980 7.834681 AGAAGTACATGATCTACTTGGAGTACA 59.165 37.037 10.91 0.00 35.08 2.90
3833 8981 7.956328 AGTACATGATCTACTTGGAGTACAA 57.044 36.000 0.00 0.00 37.55 2.41
3841 8989 3.339547 TTGGAGTACAAGGCAAGCC 57.660 52.632 2.02 2.02 33.18 4.35
3842 8990 0.476338 TTGGAGTACAAGGCAAGCCA 59.524 50.000 14.40 0.00 38.92 4.75
3843 8991 0.476338 TGGAGTACAAGGCAAGCCAA 59.524 50.000 14.40 0.00 38.92 4.52
3844 8992 1.133637 TGGAGTACAAGGCAAGCCAAA 60.134 47.619 14.40 0.00 38.92 3.28
3845 8993 1.960689 GGAGTACAAGGCAAGCCAAAA 59.039 47.619 14.40 0.00 38.92 2.44
3846 8994 2.562738 GGAGTACAAGGCAAGCCAAAAT 59.437 45.455 14.40 0.00 38.92 1.82
3847 8995 3.761752 GGAGTACAAGGCAAGCCAAAATA 59.238 43.478 14.40 0.00 38.92 1.40
3848 8996 4.402474 GGAGTACAAGGCAAGCCAAAATAT 59.598 41.667 14.40 0.00 38.92 1.28
3849 8997 5.105351 GGAGTACAAGGCAAGCCAAAATATT 60.105 40.000 14.40 0.00 38.92 1.28
3850 8998 6.358974 AGTACAAGGCAAGCCAAAATATTT 57.641 33.333 14.40 0.00 38.92 1.40
3851 8999 6.398095 AGTACAAGGCAAGCCAAAATATTTC 58.602 36.000 14.40 0.00 38.92 2.17
3852 9000 4.578871 ACAAGGCAAGCCAAAATATTTCC 58.421 39.130 14.40 0.00 38.92 3.13
3853 9001 4.286808 ACAAGGCAAGCCAAAATATTTCCT 59.713 37.500 14.40 0.00 38.92 3.36
3854 9002 5.483583 ACAAGGCAAGCCAAAATATTTCCTA 59.516 36.000 14.40 0.00 38.92 2.94
3855 9003 5.859205 AGGCAAGCCAAAATATTTCCTAG 57.141 39.130 14.40 0.00 38.92 3.02
3856 9004 5.272402 AGGCAAGCCAAAATATTTCCTAGT 58.728 37.500 14.40 0.00 38.92 2.57
3857 9005 5.360999 AGGCAAGCCAAAATATTTCCTAGTC 59.639 40.000 14.40 0.00 38.92 2.59
3858 9006 5.360999 GGCAAGCCAAAATATTTCCTAGTCT 59.639 40.000 6.14 0.00 35.81 3.24
3859 9007 6.546034 GGCAAGCCAAAATATTTCCTAGTCTA 59.454 38.462 6.14 0.00 35.81 2.59
3860 9008 7.255277 GGCAAGCCAAAATATTTCCTAGTCTAG 60.255 40.741 6.14 0.00 35.81 2.43
3861 9009 7.643579 CAAGCCAAAATATTTCCTAGTCTAGC 58.356 38.462 0.10 0.00 0.00 3.42
3862 9010 6.299922 AGCCAAAATATTTCCTAGTCTAGCC 58.700 40.000 0.10 0.00 0.00 3.93
3863 9011 6.101881 AGCCAAAATATTTCCTAGTCTAGCCT 59.898 38.462 0.10 0.00 0.00 4.58
3864 9012 7.292591 AGCCAAAATATTTCCTAGTCTAGCCTA 59.707 37.037 0.10 0.00 0.00 3.93
3865 9013 8.103935 GCCAAAATATTTCCTAGTCTAGCCTAT 58.896 37.037 0.10 0.00 0.00 2.57
3866 9014 9.442047 CCAAAATATTTCCTAGTCTAGCCTATG 57.558 37.037 0.10 0.00 0.00 2.23
3872 9020 7.490657 TTTCCTAGTCTAGCCTATGTTTTCA 57.509 36.000 0.86 0.00 0.00 2.69
3873 9021 7.490657 TTCCTAGTCTAGCCTATGTTTTCAA 57.509 36.000 0.86 0.00 0.00 2.69
3874 9022 7.676683 TCCTAGTCTAGCCTATGTTTTCAAT 57.323 36.000 0.86 0.00 0.00 2.57
3875 9023 8.777578 TCCTAGTCTAGCCTATGTTTTCAATA 57.222 34.615 0.86 0.00 0.00 1.90
3876 9024 9.381038 TCCTAGTCTAGCCTATGTTTTCAATAT 57.619 33.333 0.86 0.00 0.00 1.28
3914 9062 4.619227 CCCCGCAGTCACAACGGT 62.619 66.667 7.64 0.00 45.49 4.83
3915 9063 2.340809 CCCGCAGTCACAACGGTA 59.659 61.111 7.64 0.00 45.49 4.02
3916 9064 1.736645 CCCGCAGTCACAACGGTAG 60.737 63.158 7.64 0.00 45.49 3.18
3917 9065 1.006571 CCGCAGTCACAACGGTAGT 60.007 57.895 0.43 0.00 42.01 2.73
3918 9066 1.282248 CCGCAGTCACAACGGTAGTG 61.282 60.000 0.43 0.00 42.01 2.74
3919 9067 0.318360 CGCAGTCACAACGGTAGTGA 60.318 55.000 2.21 2.21 43.23 3.41
3922 9070 4.639824 TCACAACGGTAGTGACGC 57.360 55.556 2.21 0.00 40.80 5.19
3923 9071 1.734748 TCACAACGGTAGTGACGCA 59.265 52.632 2.21 0.00 40.80 5.24
3924 9072 0.318360 TCACAACGGTAGTGACGCAG 60.318 55.000 2.21 0.00 40.80 5.18
3925 9073 0.318360 CACAACGGTAGTGACGCAGA 60.318 55.000 0.00 0.00 39.30 4.26
3926 9074 0.318445 ACAACGGTAGTGACGCAGAC 60.318 55.000 0.00 0.00 34.00 3.51
3928 9076 2.202440 CGGTAGTGACGCAGACGG 60.202 66.667 0.00 0.00 46.04 4.79
3929 9077 2.960170 GGTAGTGACGCAGACGGT 59.040 61.111 0.00 0.00 46.04 4.83
3930 9078 1.443872 GGTAGTGACGCAGACGGTG 60.444 63.158 0.00 0.00 46.04 4.94
3931 9079 1.577922 GTAGTGACGCAGACGGTGA 59.422 57.895 0.00 0.00 46.04 4.02
3932 9080 0.454620 GTAGTGACGCAGACGGTGAG 60.455 60.000 0.00 0.00 46.04 3.51
3933 9081 0.604511 TAGTGACGCAGACGGTGAGA 60.605 55.000 0.00 0.00 46.04 3.27
3934 9082 1.729838 GTGACGCAGACGGTGAGAC 60.730 63.158 0.00 0.00 46.04 3.36
3935 9083 1.897137 TGACGCAGACGGTGAGACT 60.897 57.895 0.00 0.00 46.04 3.24
3936 9084 1.442857 GACGCAGACGGTGAGACTG 60.443 63.158 0.00 0.00 46.04 3.51
3937 9085 2.126307 CGCAGACGGTGAGACTGG 60.126 66.667 0.00 0.00 41.73 4.00
3938 9086 2.626780 CGCAGACGGTGAGACTGGA 61.627 63.158 0.00 0.00 41.73 3.86
3939 9087 1.214062 GCAGACGGTGAGACTGGAG 59.786 63.158 0.00 0.00 41.73 3.86
3940 9088 1.244697 GCAGACGGTGAGACTGGAGA 61.245 60.000 0.00 0.00 41.73 3.71
3941 9089 1.248486 CAGACGGTGAGACTGGAGAA 58.752 55.000 0.00 0.00 38.63 2.87
3942 9090 1.201181 CAGACGGTGAGACTGGAGAAG 59.799 57.143 0.00 0.00 38.63 2.85
3943 9091 1.074084 AGACGGTGAGACTGGAGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
3944 9092 1.887198 GACGGTGAGACTGGAGAAGAA 59.113 52.381 0.00 0.00 0.00 2.52
3945 9093 2.494073 GACGGTGAGACTGGAGAAGAAT 59.506 50.000 0.00 0.00 0.00 2.40
3946 9094 2.494073 ACGGTGAGACTGGAGAAGAATC 59.506 50.000 0.00 0.00 0.00 2.52
3947 9095 2.159170 CGGTGAGACTGGAGAAGAATCC 60.159 54.545 0.00 0.00 40.03 3.01
3948 9096 2.159170 GGTGAGACTGGAGAAGAATCCG 60.159 54.545 0.00 0.00 42.77 4.18
3949 9097 2.755655 GTGAGACTGGAGAAGAATCCGA 59.244 50.000 0.00 0.00 42.77 4.55
3950 9098 3.193691 GTGAGACTGGAGAAGAATCCGAA 59.806 47.826 0.00 0.00 42.77 4.30
3951 9099 3.445450 TGAGACTGGAGAAGAATCCGAAG 59.555 47.826 0.00 0.00 42.77 3.79
3997 9145 3.760693 CCCCCTCACAGTCATAACG 57.239 57.895 0.00 0.00 0.00 3.18
3998 9146 0.178068 CCCCCTCACAGTCATAACGG 59.822 60.000 0.00 0.00 0.00 4.44
3999 9147 0.902531 CCCCTCACAGTCATAACGGT 59.097 55.000 0.00 0.00 33.83 4.83
4000 9148 1.134788 CCCCTCACAGTCATAACGGTC 60.135 57.143 0.00 0.00 30.93 4.79
4001 9149 1.469251 CCCTCACAGTCATAACGGTCG 60.469 57.143 0.00 0.00 30.93 4.79
4002 9150 1.471287 CCTCACAGTCATAACGGTCGA 59.529 52.381 0.00 0.00 30.93 4.20
4003 9151 2.099263 CCTCACAGTCATAACGGTCGAT 59.901 50.000 0.00 0.00 30.93 3.59
4004 9152 3.108881 CTCACAGTCATAACGGTCGATG 58.891 50.000 0.00 0.00 30.93 3.84
4005 9153 1.588404 CACAGTCATAACGGTCGATGC 59.412 52.381 0.00 0.00 30.93 3.91
4006 9154 1.203758 ACAGTCATAACGGTCGATGCA 59.796 47.619 0.00 0.00 0.00 3.96
4007 9155 2.159099 ACAGTCATAACGGTCGATGCAT 60.159 45.455 0.00 0.00 0.00 3.96
4008 9156 2.472861 CAGTCATAACGGTCGATGCATC 59.527 50.000 17.10 17.10 0.00 3.91
4017 9165 2.536619 CGATGCATCGCGAAGTCG 59.463 61.111 33.70 16.37 43.84 4.18
4018 9166 2.224217 CGATGCATCGCGAAGTCGT 61.224 57.895 33.70 6.54 43.84 4.34
4019 9167 1.742900 CGATGCATCGCGAAGTCGTT 61.743 55.000 33.70 0.00 43.84 3.85
4020 9168 0.314578 GATGCATCGCGAAGTCGTTG 60.315 55.000 15.24 6.87 42.22 4.10
4021 9169 1.695893 ATGCATCGCGAAGTCGTTGG 61.696 55.000 15.24 0.00 42.22 3.77
4022 9170 2.380410 GCATCGCGAAGTCGTTGGT 61.380 57.895 15.24 0.00 42.22 3.67
4023 9171 1.416049 CATCGCGAAGTCGTTGGTG 59.584 57.895 15.24 0.00 42.22 4.17
4024 9172 1.736645 ATCGCGAAGTCGTTGGTGG 60.737 57.895 15.24 0.00 42.22 4.61
4025 9173 2.149803 ATCGCGAAGTCGTTGGTGGA 62.150 55.000 15.24 0.00 42.22 4.02
4026 9174 2.372690 CGCGAAGTCGTTGGTGGAG 61.373 63.158 0.00 0.00 42.22 3.86
4027 9175 1.300697 GCGAAGTCGTTGGTGGAGT 60.301 57.895 2.25 0.00 42.22 3.85
4028 9176 1.557443 GCGAAGTCGTTGGTGGAGTG 61.557 60.000 2.25 0.00 42.22 3.51
4029 9177 0.944311 CGAAGTCGTTGGTGGAGTGG 60.944 60.000 0.00 0.00 34.11 4.00
4030 9178 0.391597 GAAGTCGTTGGTGGAGTGGA 59.608 55.000 0.00 0.00 0.00 4.02
4031 9179 0.834612 AAGTCGTTGGTGGAGTGGAA 59.165 50.000 0.00 0.00 0.00 3.53
4032 9180 0.834612 AGTCGTTGGTGGAGTGGAAA 59.165 50.000 0.00 0.00 0.00 3.13
4033 9181 0.942252 GTCGTTGGTGGAGTGGAAAC 59.058 55.000 0.00 0.00 0.00 2.78
4034 9182 0.179040 TCGTTGGTGGAGTGGAAACC 60.179 55.000 0.00 0.00 34.38 3.27
4035 9183 1.503818 CGTTGGTGGAGTGGAAACCG 61.504 60.000 0.00 0.00 36.73 4.44
4036 9184 0.179040 GTTGGTGGAGTGGAAACCGA 60.179 55.000 0.00 0.00 36.73 4.69
4037 9185 0.179040 TTGGTGGAGTGGAAACCGAC 60.179 55.000 0.00 0.00 36.73 4.79
4038 9186 1.666872 GGTGGAGTGGAAACCGACG 60.667 63.158 0.00 0.00 0.00 5.12
4039 9187 1.364901 GTGGAGTGGAAACCGACGA 59.635 57.895 0.00 0.00 0.00 4.20
4040 9188 0.666577 GTGGAGTGGAAACCGACGAG 60.667 60.000 0.00 0.00 0.00 4.18
4050 9198 3.862124 CCGACGAGGTTGCTCAAG 58.138 61.111 0.00 0.00 34.51 3.02
4051 9199 2.383527 CCGACGAGGTTGCTCAAGC 61.384 63.158 0.00 3.81 38.96 4.01
4061 9209 3.741476 GCTCAAGCAAGGCGGTGG 61.741 66.667 0.00 0.00 41.59 4.61
4062 9210 3.741476 CTCAAGCAAGGCGGTGGC 61.741 66.667 0.00 0.00 38.90 5.01
4079 9227 3.215642 GCCCTTTGTGCCATTTGTC 57.784 52.632 0.00 0.00 0.00 3.18
4080 9228 0.667184 GCCCTTTGTGCCATTTGTCG 60.667 55.000 0.00 0.00 0.00 4.35
4081 9229 0.958091 CCCTTTGTGCCATTTGTCGA 59.042 50.000 0.00 0.00 0.00 4.20
4082 9230 1.068333 CCCTTTGTGCCATTTGTCGAG 60.068 52.381 0.00 0.00 0.00 4.04
4083 9231 1.068333 CCTTTGTGCCATTTGTCGAGG 60.068 52.381 0.00 0.00 0.00 4.63
4084 9232 1.608590 CTTTGTGCCATTTGTCGAGGT 59.391 47.619 0.00 0.00 0.00 3.85
4085 9233 2.552599 TTGTGCCATTTGTCGAGGTA 57.447 45.000 0.00 0.00 0.00 3.08
4086 9234 2.093306 TGTGCCATTTGTCGAGGTAG 57.907 50.000 0.00 0.00 0.00 3.18
4087 9235 0.727398 GTGCCATTTGTCGAGGTAGC 59.273 55.000 0.00 0.00 0.00 3.58
4088 9236 0.392461 TGCCATTTGTCGAGGTAGCC 60.392 55.000 0.00 0.00 0.00 3.93
4089 9237 1.429148 GCCATTTGTCGAGGTAGCCG 61.429 60.000 0.00 0.00 0.00 5.52
4090 9238 0.174845 CCATTTGTCGAGGTAGCCGA 59.825 55.000 2.07 2.07 0.00 5.54
4091 9239 1.560923 CATTTGTCGAGGTAGCCGAG 58.439 55.000 5.87 0.00 36.66 4.63
4092 9240 1.134367 CATTTGTCGAGGTAGCCGAGA 59.866 52.381 5.87 2.84 36.66 4.04
4093 9241 0.809385 TTTGTCGAGGTAGCCGAGAG 59.191 55.000 5.87 0.00 36.66 3.20
4094 9242 1.654954 TTGTCGAGGTAGCCGAGAGC 61.655 60.000 5.87 0.00 44.25 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.679505 GTATCCACGGCCTCTGCATA 59.320 55.000 0.00 0.00 40.13 3.14
4 5 0.601311 GATGTATCCACGGCCTCTGC 60.601 60.000 0.00 0.00 0.00 4.26
5 6 0.034059 GGATGTATCCACGGCCTCTG 59.966 60.000 0.00 0.00 46.38 3.35
6 7 2.442056 GGATGTATCCACGGCCTCT 58.558 57.895 0.00 0.00 46.38 3.69
37 38 9.739276 TCCATATGAAGTAACAATCACTCTTTT 57.261 29.630 3.65 0.00 0.00 2.27
38 39 9.739276 TTCCATATGAAGTAACAATCACTCTTT 57.261 29.630 3.65 0.00 0.00 2.52
55 56 5.762179 ACCAAGACTGAACTTCCATATGA 57.238 39.130 3.65 0.00 0.00 2.15
56 57 5.939883 TGAACCAAGACTGAACTTCCATATG 59.060 40.000 0.00 0.00 0.00 1.78
64 65 3.535561 CACAGTGAACCAAGACTGAACT 58.464 45.455 0.00 0.00 41.90 3.01
76 77 2.119801 ATCATCCTGCCACAGTGAAC 57.880 50.000 0.62 0.00 0.00 3.18
99 100 6.682863 CCTAAAAATAAAACGAGTCAGATGCG 59.317 38.462 0.00 0.00 0.00 4.73
104 105 6.072673 AGGTGCCTAAAAATAAAACGAGTCAG 60.073 38.462 0.00 0.00 0.00 3.51
165 166 1.964373 GGTGCACACCCCAACTACG 60.964 63.158 20.43 0.00 45.68 3.51
181 182 5.221803 ACTGACAATGAGACAATGAGAAGGT 60.222 40.000 0.00 0.00 0.00 3.50
182 183 5.243981 ACTGACAATGAGACAATGAGAAGG 58.756 41.667 0.00 0.00 0.00 3.46
186 187 5.728471 AGGTACTGACAATGAGACAATGAG 58.272 41.667 0.00 0.00 37.18 2.90
187 188 5.622233 CGAGGTACTGACAATGAGACAATGA 60.622 44.000 0.00 0.00 41.55 2.57
188 189 4.564372 CGAGGTACTGACAATGAGACAATG 59.436 45.833 0.00 0.00 41.55 2.82
189 190 4.748892 CGAGGTACTGACAATGAGACAAT 58.251 43.478 0.00 0.00 41.55 2.71
190 191 3.614150 GCGAGGTACTGACAATGAGACAA 60.614 47.826 0.00 0.00 41.55 3.18
191 192 2.094700 GCGAGGTACTGACAATGAGACA 60.095 50.000 0.00 0.00 41.55 3.41
192 193 2.531206 GCGAGGTACTGACAATGAGAC 58.469 52.381 0.00 0.00 41.55 3.36
193 194 1.476891 GGCGAGGTACTGACAATGAGA 59.523 52.381 0.00 0.00 41.55 3.27
194 195 1.799181 CGGCGAGGTACTGACAATGAG 60.799 57.143 0.00 0.00 41.55 2.90
195 196 0.172578 CGGCGAGGTACTGACAATGA 59.827 55.000 0.00 0.00 41.55 2.57
196 197 0.806102 CCGGCGAGGTACTGACAATG 60.806 60.000 9.30 0.00 41.55 2.82
197 198 1.515954 CCGGCGAGGTACTGACAAT 59.484 57.895 9.30 0.00 41.55 2.71
198 199 2.967397 CCGGCGAGGTACTGACAA 59.033 61.111 9.30 0.00 41.55 3.18
208 209 1.463444 CCTCAGTTTAAAACCGGCGAG 59.537 52.381 9.30 0.06 0.00 5.03
209 210 1.515081 CCTCAGTTTAAAACCGGCGA 58.485 50.000 9.30 0.00 0.00 5.54
210 211 0.519961 CCCTCAGTTTAAAACCGGCG 59.480 55.000 0.00 0.00 0.00 6.46
312 313 1.835494 AACTAGACACCGCTGAGCTA 58.165 50.000 1.78 0.00 0.00 3.32
328 329 4.762251 GCTCCTATGGTGTTCTTCAAAACT 59.238 41.667 0.00 0.00 0.00 2.66
415 668 5.122869 CGAATCAATTCATTAGGATCCGCAT 59.877 40.000 5.98 0.00 36.61 4.73
421 674 7.362401 GCCATTAGCGAATCAATTCATTAGGAT 60.362 37.037 3.81 0.00 36.61 3.24
429 682 4.293415 CAAGGCCATTAGCGAATCAATTC 58.707 43.478 5.01 0.00 45.17 2.17
472 725 6.015095 TGCTCTGACCTACTTCATACATATGG 60.015 42.308 7.80 0.00 34.50 2.74
513 766 7.830940 TTCGTTCTATTTTTATTCTGGCGTA 57.169 32.000 0.00 0.00 0.00 4.42
524 777 9.836076 GCTACCTACAAAATTCGTTCTATTTTT 57.164 29.630 0.00 0.00 34.01 1.94
529 782 8.689061 TGATAGCTACCTACAAAATTCGTTCTA 58.311 33.333 0.00 0.00 0.00 2.10
530 783 7.553334 TGATAGCTACCTACAAAATTCGTTCT 58.447 34.615 0.00 0.00 0.00 3.01
575 829 4.133820 CCCACTTGTTATCACTGTCACAA 58.866 43.478 0.00 0.00 0.00 3.33
587 841 6.227298 TGAAATCTTTTTGCCCACTTGTTA 57.773 33.333 0.00 0.00 0.00 2.41
660 914 1.328680 CACTTGATGGCACGTAGATGC 59.671 52.381 0.00 0.00 45.34 3.91
696 950 7.360861 CGAGCAGAACAAGATTACCATTTAACA 60.361 37.037 0.00 0.00 0.00 2.41
697 951 6.961554 CGAGCAGAACAAGATTACCATTTAAC 59.038 38.462 0.00 0.00 0.00 2.01
698 952 6.876789 TCGAGCAGAACAAGATTACCATTTAA 59.123 34.615 0.00 0.00 0.00 1.52
699 953 6.403049 TCGAGCAGAACAAGATTACCATTTA 58.597 36.000 0.00 0.00 0.00 1.40
727 997 7.001674 AGTGAGGTGGACAATTAACAATACAA 58.998 34.615 0.00 0.00 0.00 2.41
907 4536 2.229792 TGTTTGAGCATGACTGGAACC 58.770 47.619 0.00 0.00 0.00 3.62
914 4544 6.668541 ACATGTACTATGTTTGAGCATGAC 57.331 37.500 0.00 0.00 36.65 3.06
983 4620 5.250543 TCCTCCATCCTTGATAGTTGAAACA 59.749 40.000 0.00 0.00 0.00 2.83
993 4630 1.064824 GGGGCTCCTCCATCCTTGAT 61.065 60.000 0.00 0.00 36.21 2.57
999 4636 0.394899 CAACAAGGGGCTCCTCCATC 60.395 60.000 5.00 0.00 44.07 3.51
1029 4666 0.033011 TCACTACCAGGCTCTCCTCC 60.033 60.000 0.00 0.00 41.93 4.30
1080 4717 1.066587 GCTTCCGACGATGAGAGGG 59.933 63.158 0.00 0.00 0.00 4.30
1270 4909 4.035814 AGTTGATGATGATGTCCAGGAGA 58.964 43.478 0.00 0.00 0.00 3.71
1387 5027 3.071602 GGATTGCCCTCTGCTTGTAGATA 59.928 47.826 0.00 0.00 42.00 1.98
1684 5330 4.705482 AAGGCAGCACCCTTGTTT 57.295 50.000 7.07 0.00 43.43 2.83
1759 5405 2.159366 CGTGCTCTTACAAGACGGAGAT 60.159 50.000 0.00 0.00 0.00 2.75
1780 5426 2.356673 GTCGACAACCCCGTCCAC 60.357 66.667 11.55 0.00 31.91 4.02
1817 5463 0.951558 GCAAGCCTCAAGAAACCGAA 59.048 50.000 0.00 0.00 0.00 4.30
1876 5522 2.285834 GCACTTGCGACATATAGCACAC 60.286 50.000 0.00 0.00 43.69 3.82
1878 5524 1.933181 TGCACTTGCGACATATAGCAC 59.067 47.619 0.00 0.00 43.69 4.40
1903 5554 8.909708 TTACTTAAATCAATCAAAAGATGGCG 57.090 30.769 0.00 0.00 0.00 5.69
1954 5610 1.536073 CCACTCCCAGCTTCTCGTGA 61.536 60.000 4.94 0.00 0.00 4.35
1961 5617 2.883828 CGACCACCACTCCCAGCTT 61.884 63.158 0.00 0.00 0.00 3.74
2138 6057 3.354089 AACTGCACGAAATTCAACTGG 57.646 42.857 0.00 0.00 0.00 4.00
2151 6070 6.455646 CCAACGAGATAGTATTCAAACTGCAC 60.456 42.308 0.00 0.00 0.00 4.57
2187 6106 1.202806 GCTGCACTAAGCCCATATGGA 60.203 52.381 24.00 1.68 44.83 3.41
2409 7356 1.168407 CCCCATAGATTGCGCACCAG 61.168 60.000 11.12 0.00 0.00 4.00
2430 7377 0.510790 TTGTCGTTGCTGTATGCGTG 59.489 50.000 0.00 0.00 46.63 5.34
2563 7557 8.948853 TTAATAAGCATATATTTTCAGCACGC 57.051 30.769 0.00 0.00 0.00 5.34
2636 7632 4.333926 GCACTGAGATTGACATAAGAACCC 59.666 45.833 0.00 0.00 0.00 4.11
2642 7638 5.324784 AGTACGCACTGAGATTGACATAA 57.675 39.130 0.00 0.00 32.25 1.90
2966 8072 1.078759 AGGCGAATGAGAAGCGAACG 61.079 55.000 0.00 0.00 0.00 3.95
2982 8088 0.383231 GGACATGCATGCAGTAAGGC 59.617 55.000 26.69 16.87 0.00 4.35
3086 8193 1.337728 TGTGTGTCCTTATGTCGCCAG 60.338 52.381 0.00 0.00 0.00 4.85
3096 8203 2.346766 TGCATCTTGTGTGTGTCCTT 57.653 45.000 0.00 0.00 0.00 3.36
3131 8242 3.209410 CTTATTTCCCTGCGCATCTCTT 58.791 45.455 12.24 0.00 0.00 2.85
3139 8250 2.095372 GTCGTTTCCTTATTTCCCTGCG 59.905 50.000 0.00 0.00 0.00 5.18
3207 8321 1.432514 CGTGAAGGAGTGACACATGG 58.567 55.000 8.59 0.00 34.69 3.66
3248 8362 2.080286 AATATACGACGGATGGCAGC 57.920 50.000 1.83 0.00 0.00 5.25
3252 8366 6.981762 AGTCTAGTAATATACGACGGATGG 57.018 41.667 1.83 0.00 0.00 3.51
3281 8395 9.370930 TCCTTGCCATTATATTCTTTCATGAAT 57.629 29.630 9.40 0.00 39.63 2.57
3332 8472 2.224257 TGCCACTTGCTGGAAAAATTCC 60.224 45.455 2.12 2.12 43.95 3.01
3402 8546 0.323629 CCTCCCACTGTCGGCTTTAA 59.676 55.000 0.00 0.00 0.00 1.52
3412 8556 2.654863 ACAAGTCAAAACCTCCCACTG 58.345 47.619 0.00 0.00 0.00 3.66
3455 8599 6.772716 AGCTATCCAAGAAAGAAACAACTCAA 59.227 34.615 0.00 0.00 0.00 3.02
3490 8634 5.990996 CCTATTCTCTTGAAAGGAGCATCTC 59.009 44.000 0.00 0.00 34.94 2.75
3516 8660 4.083696 ACGTGCGTTTTTCGAAGGAAATAT 60.084 37.500 0.00 0.00 41.54 1.28
3518 8662 2.032426 ACGTGCGTTTTTCGAAGGAAAT 59.968 40.909 0.00 0.00 41.54 2.17
3520 8664 1.004715 GACGTGCGTTTTTCGAAGGAA 60.005 47.619 0.00 0.00 42.86 3.36
3525 8669 1.563111 AGAAGACGTGCGTTTTTCGA 58.437 45.000 0.00 0.00 42.86 3.71
3536 8682 7.709613 ATTTTATCAAATAGCCGTAGAAGACGT 59.290 33.333 0.00 0.00 39.19 4.34
3561 8708 6.403636 CGAATAAGCAAAGTAAAGTGAGGCAT 60.404 38.462 0.00 0.00 0.00 4.40
3568 8715 8.185505 TGTCAAAACGAATAAGCAAAGTAAAGT 58.814 29.630 0.00 0.00 0.00 2.66
3635 8782 9.366216 AGAAACTTGTGAAAATTAAAACAGGAC 57.634 29.630 4.22 0.00 0.00 3.85
3672 8820 7.122650 AGGATAAAACAATGATTGTAGGTGTGG 59.877 37.037 11.70 0.00 44.59 4.17
3737 8885 1.476477 ACCTCTCGCTCCCTTCTAAC 58.524 55.000 0.00 0.00 0.00 2.34
3738 8886 2.233305 AACCTCTCGCTCCCTTCTAA 57.767 50.000 0.00 0.00 0.00 2.10
3739 8887 1.825474 CAAACCTCTCGCTCCCTTCTA 59.175 52.381 0.00 0.00 0.00 2.10
3740 8888 0.610687 CAAACCTCTCGCTCCCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
3741 8889 0.391793 CCAAACCTCTCGCTCCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
3742 8890 1.128188 ACCAAACCTCTCGCTCCCTT 61.128 55.000 0.00 0.00 0.00 3.95
3743 8891 1.536662 ACCAAACCTCTCGCTCCCT 60.537 57.895 0.00 0.00 0.00 4.20
3744 8892 1.376037 CACCAAACCTCTCGCTCCC 60.376 63.158 0.00 0.00 0.00 4.30
3745 8893 1.376037 CCACCAAACCTCTCGCTCC 60.376 63.158 0.00 0.00 0.00 4.70
3746 8894 0.034896 TTCCACCAAACCTCTCGCTC 59.965 55.000 0.00 0.00 0.00 5.03
3747 8895 0.693049 ATTCCACCAAACCTCTCGCT 59.307 50.000 0.00 0.00 0.00 4.93
3748 8896 2.280628 CTATTCCACCAAACCTCTCGC 58.719 52.381 0.00 0.00 0.00 5.03
3749 8897 3.611766 ACTATTCCACCAAACCTCTCG 57.388 47.619 0.00 0.00 0.00 4.04
3750 8898 6.650427 AAAAACTATTCCACCAAACCTCTC 57.350 37.500 0.00 0.00 0.00 3.20
3771 8919 3.568007 ACGAGGCTCAAGCAATACAAAAA 59.432 39.130 15.95 0.00 44.36 1.94
3772 8920 3.058293 CACGAGGCTCAAGCAATACAAAA 60.058 43.478 15.95 0.00 44.36 2.44
3773 8921 2.483877 CACGAGGCTCAAGCAATACAAA 59.516 45.455 15.95 0.00 44.36 2.83
3774 8922 2.076100 CACGAGGCTCAAGCAATACAA 58.924 47.619 15.95 0.00 44.36 2.41
3775 8923 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
3776 8924 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
3777 8925 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
3778 8926 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
3779 8927 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
3788 8936 6.716934 ACTTCTATATATATGCCCACGAGG 57.283 41.667 5.44 0.00 39.47 4.63
3789 8937 8.221965 TGTACTTCTATATATATGCCCACGAG 57.778 38.462 5.44 0.00 0.00 4.18
3790 8938 8.630037 CATGTACTTCTATATATATGCCCACGA 58.370 37.037 5.44 0.00 0.00 4.35
3791 8939 8.630037 TCATGTACTTCTATATATATGCCCACG 58.370 37.037 5.44 0.00 0.00 4.94
3805 8953 9.339850 GTACTCCAAGTAGATCATGTACTTCTA 57.660 37.037 4.20 0.00 38.42 2.10
3806 8954 7.834681 TGTACTCCAAGTAGATCATGTACTTCT 59.165 37.037 4.20 1.21 38.42 2.85
3807 8955 7.997482 TGTACTCCAAGTAGATCATGTACTTC 58.003 38.462 4.20 0.00 38.42 3.01
3808 8956 7.956328 TGTACTCCAAGTAGATCATGTACTT 57.044 36.000 1.26 1.26 40.62 2.24
3809 8957 7.956328 TTGTACTCCAAGTAGATCATGTACT 57.044 36.000 0.00 0.00 30.12 2.73
3823 8971 0.476338 TGGCTTGCCTTGTACTCCAA 59.524 50.000 13.18 0.00 0.00 3.53
3824 8972 0.476338 TTGGCTTGCCTTGTACTCCA 59.524 50.000 13.18 0.00 0.00 3.86
3825 8973 1.616159 TTTGGCTTGCCTTGTACTCC 58.384 50.000 13.18 0.00 0.00 3.85
3826 8974 3.942130 ATTTTGGCTTGCCTTGTACTC 57.058 42.857 13.18 0.00 0.00 2.59
3827 8975 6.358974 AAATATTTTGGCTTGCCTTGTACT 57.641 33.333 13.18 0.00 0.00 2.73
3828 8976 5.580691 GGAAATATTTTGGCTTGCCTTGTAC 59.419 40.000 13.18 0.00 0.00 2.90
3829 8977 5.483583 AGGAAATATTTTGGCTTGCCTTGTA 59.516 36.000 13.18 1.89 0.00 2.41
3830 8978 4.286808 AGGAAATATTTTGGCTTGCCTTGT 59.713 37.500 13.18 0.00 0.00 3.16
3831 8979 4.835678 AGGAAATATTTTGGCTTGCCTTG 58.164 39.130 13.18 0.00 0.00 3.61
3832 8980 5.721480 ACTAGGAAATATTTTGGCTTGCCTT 59.279 36.000 13.18 0.00 0.00 4.35
3833 8981 5.272402 ACTAGGAAATATTTTGGCTTGCCT 58.728 37.500 13.18 5.03 0.00 4.75
3834 8982 5.360999 AGACTAGGAAATATTTTGGCTTGCC 59.639 40.000 4.43 4.43 0.00 4.52
3835 8983 6.456795 AGACTAGGAAATATTTTGGCTTGC 57.543 37.500 1.43 0.00 0.00 4.01
3836 8984 7.255277 GGCTAGACTAGGAAATATTTTGGCTTG 60.255 40.741 11.48 3.94 0.00 4.01
3837 8985 6.773200 GGCTAGACTAGGAAATATTTTGGCTT 59.227 38.462 11.48 0.00 0.00 4.35
3838 8986 6.101881 AGGCTAGACTAGGAAATATTTTGGCT 59.898 38.462 11.48 4.03 0.00 4.75
3839 8987 6.299922 AGGCTAGACTAGGAAATATTTTGGC 58.700 40.000 11.48 0.00 0.00 4.52
3840 8988 9.442047 CATAGGCTAGACTAGGAAATATTTTGG 57.558 37.037 12.04 0.00 0.00 3.28
3846 8994 9.209048 TGAAAACATAGGCTAGACTAGGAAATA 57.791 33.333 23.71 3.49 0.00 1.40
3847 8995 8.090788 TGAAAACATAGGCTAGACTAGGAAAT 57.909 34.615 23.71 8.51 0.00 2.17
3848 8996 7.490657 TGAAAACATAGGCTAGACTAGGAAA 57.509 36.000 23.71 0.00 0.00 3.13
3849 8997 7.490657 TTGAAAACATAGGCTAGACTAGGAA 57.509 36.000 23.71 4.34 0.00 3.36
3850 8998 7.676683 ATTGAAAACATAGGCTAGACTAGGA 57.323 36.000 23.71 0.22 0.00 2.94
3900 9048 0.318360 TCACTACCGTTGTGACTGCG 60.318 55.000 11.17 0.00 39.23 5.18
3901 9049 3.580904 TCACTACCGTTGTGACTGC 57.419 52.632 11.17 0.00 39.23 4.40
3905 9053 0.318360 CTGCGTCACTACCGTTGTGA 60.318 55.000 11.17 11.17 41.48 3.58
3906 9054 0.318360 TCTGCGTCACTACCGTTGTG 60.318 55.000 6.76 6.76 36.82 3.33
3907 9055 0.318445 GTCTGCGTCACTACCGTTGT 60.318 55.000 0.00 0.00 0.00 3.32
3908 9056 1.334992 CGTCTGCGTCACTACCGTTG 61.335 60.000 0.00 0.00 0.00 4.10
3909 9057 1.081641 CGTCTGCGTCACTACCGTT 60.082 57.895 0.00 0.00 0.00 4.44
3910 9058 2.559840 CGTCTGCGTCACTACCGT 59.440 61.111 0.00 0.00 0.00 4.83
3911 9059 2.202440 CCGTCTGCGTCACTACCG 60.202 66.667 0.00 0.00 36.15 4.02
3912 9060 1.443872 CACCGTCTGCGTCACTACC 60.444 63.158 0.00 0.00 36.15 3.18
3913 9061 0.454620 CTCACCGTCTGCGTCACTAC 60.455 60.000 0.00 0.00 36.15 2.73
3914 9062 0.604511 TCTCACCGTCTGCGTCACTA 60.605 55.000 0.00 0.00 36.15 2.74
3915 9063 1.897137 TCTCACCGTCTGCGTCACT 60.897 57.895 0.00 0.00 36.15 3.41
3916 9064 1.729838 GTCTCACCGTCTGCGTCAC 60.730 63.158 0.00 0.00 36.15 3.67
3917 9065 1.897137 AGTCTCACCGTCTGCGTCA 60.897 57.895 0.00 0.00 36.15 4.35
3918 9066 1.442857 CAGTCTCACCGTCTGCGTC 60.443 63.158 0.00 0.00 36.15 5.19
3919 9067 2.645567 CAGTCTCACCGTCTGCGT 59.354 61.111 0.00 0.00 36.15 5.24
3920 9068 2.126307 CCAGTCTCACCGTCTGCG 60.126 66.667 0.00 0.00 37.95 5.18
3921 9069 1.214062 CTCCAGTCTCACCGTCTGC 59.786 63.158 0.00 0.00 0.00 4.26
3922 9070 1.201181 CTTCTCCAGTCTCACCGTCTG 59.799 57.143 0.00 0.00 0.00 3.51
3923 9071 1.074084 TCTTCTCCAGTCTCACCGTCT 59.926 52.381 0.00 0.00 0.00 4.18
3924 9072 1.535833 TCTTCTCCAGTCTCACCGTC 58.464 55.000 0.00 0.00 0.00 4.79
3925 9073 1.996798 TTCTTCTCCAGTCTCACCGT 58.003 50.000 0.00 0.00 0.00 4.83
3926 9074 2.159170 GGATTCTTCTCCAGTCTCACCG 60.159 54.545 0.00 0.00 35.24 4.94
3927 9075 2.159170 CGGATTCTTCTCCAGTCTCACC 60.159 54.545 0.00 0.00 34.78 4.02
3928 9076 2.755655 TCGGATTCTTCTCCAGTCTCAC 59.244 50.000 0.00 0.00 34.78 3.51
3929 9077 3.087370 TCGGATTCTTCTCCAGTCTCA 57.913 47.619 0.00 0.00 34.78 3.27
3930 9078 3.181480 CCTTCGGATTCTTCTCCAGTCTC 60.181 52.174 0.00 0.00 34.78 3.36
3931 9079 2.763448 CCTTCGGATTCTTCTCCAGTCT 59.237 50.000 0.00 0.00 34.78 3.24
3932 9080 2.740256 GCCTTCGGATTCTTCTCCAGTC 60.740 54.545 0.00 0.00 34.78 3.51
3933 9081 1.208293 GCCTTCGGATTCTTCTCCAGT 59.792 52.381 0.00 0.00 34.78 4.00
3934 9082 1.208052 TGCCTTCGGATTCTTCTCCAG 59.792 52.381 0.00 0.00 34.78 3.86
3935 9083 1.066143 GTGCCTTCGGATTCTTCTCCA 60.066 52.381 0.00 0.00 34.78 3.86
3936 9084 1.657822 GTGCCTTCGGATTCTTCTCC 58.342 55.000 0.00 0.00 0.00 3.71
3937 9085 1.281899 CGTGCCTTCGGATTCTTCTC 58.718 55.000 0.00 0.00 0.00 2.87
3938 9086 0.741221 GCGTGCCTTCGGATTCTTCT 60.741 55.000 0.00 0.00 0.00 2.85
3939 9087 1.706287 GGCGTGCCTTCGGATTCTTC 61.706 60.000 2.98 0.00 0.00 2.87
3940 9088 1.745489 GGCGTGCCTTCGGATTCTT 60.745 57.895 2.98 0.00 0.00 2.52
3941 9089 2.125106 GGCGTGCCTTCGGATTCT 60.125 61.111 2.98 0.00 0.00 2.40
3942 9090 3.564027 CGGCGTGCCTTCGGATTC 61.564 66.667 9.55 0.00 0.00 2.52
3943 9091 4.077184 TCGGCGTGCCTTCGGATT 62.077 61.111 6.85 0.00 0.00 3.01
3944 9092 4.814294 GTCGGCGTGCCTTCGGAT 62.814 66.667 6.85 0.00 0.00 4.18
3979 9127 0.178068 CCGTTATGACTGTGAGGGGG 59.822 60.000 0.00 0.00 0.00 5.40
3980 9128 0.902531 ACCGTTATGACTGTGAGGGG 59.097 55.000 0.00 0.00 0.00 4.79
3981 9129 1.469251 CGACCGTTATGACTGTGAGGG 60.469 57.143 0.00 0.00 0.00 4.30
3982 9130 1.471287 TCGACCGTTATGACTGTGAGG 59.529 52.381 0.00 0.00 0.00 3.86
3983 9131 2.913777 TCGACCGTTATGACTGTGAG 57.086 50.000 0.00 0.00 0.00 3.51
3984 9132 2.734175 GCATCGACCGTTATGACTGTGA 60.734 50.000 0.00 0.00 0.00 3.58
3985 9133 1.588404 GCATCGACCGTTATGACTGTG 59.412 52.381 0.00 0.00 0.00 3.66
3986 9134 1.203758 TGCATCGACCGTTATGACTGT 59.796 47.619 0.00 0.00 0.00 3.55
3987 9135 1.921243 TGCATCGACCGTTATGACTG 58.079 50.000 0.00 0.00 0.00 3.51
3988 9136 2.743938 GATGCATCGACCGTTATGACT 58.256 47.619 11.68 0.00 0.00 3.41
4001 9149 0.314578 CAACGACTTCGCGATGCATC 60.315 55.000 20.65 17.10 44.43 3.91
4002 9150 1.695893 CCAACGACTTCGCGATGCAT 61.696 55.000 20.65 0.00 44.43 3.96
4003 9151 2.379634 CCAACGACTTCGCGATGCA 61.380 57.895 20.65 0.00 44.43 3.96
4004 9152 2.380410 ACCAACGACTTCGCGATGC 61.380 57.895 20.65 12.73 44.43 3.91
4005 9153 1.416049 CACCAACGACTTCGCGATG 59.584 57.895 19.32 19.32 44.43 3.84
4006 9154 1.736645 CCACCAACGACTTCGCGAT 60.737 57.895 10.88 0.00 44.43 4.58
4007 9155 2.355363 CCACCAACGACTTCGCGA 60.355 61.111 3.71 3.71 44.43 5.87
4008 9156 2.355363 TCCACCAACGACTTCGCG 60.355 61.111 0.00 0.00 44.43 5.87
4009 9157 1.300697 ACTCCACCAACGACTTCGC 60.301 57.895 0.00 0.00 44.43 4.70
4010 9158 0.944311 CCACTCCACCAACGACTTCG 60.944 60.000 0.00 0.00 46.33 3.79
4011 9159 0.391597 TCCACTCCACCAACGACTTC 59.608 55.000 0.00 0.00 0.00 3.01
4012 9160 0.834612 TTCCACTCCACCAACGACTT 59.165 50.000 0.00 0.00 0.00 3.01
4013 9161 0.834612 TTTCCACTCCACCAACGACT 59.165 50.000 0.00 0.00 0.00 4.18
4014 9162 0.942252 GTTTCCACTCCACCAACGAC 59.058 55.000 0.00 0.00 0.00 4.34
4015 9163 0.179040 GGTTTCCACTCCACCAACGA 60.179 55.000 0.00 0.00 0.00 3.85
4016 9164 1.503818 CGGTTTCCACTCCACCAACG 61.504 60.000 0.00 0.00 0.00 4.10
4017 9165 0.179040 TCGGTTTCCACTCCACCAAC 60.179 55.000 0.00 0.00 0.00 3.77
4018 9166 0.179040 GTCGGTTTCCACTCCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
4019 9167 1.448497 GTCGGTTTCCACTCCACCA 59.552 57.895 0.00 0.00 0.00 4.17
4020 9168 1.666872 CGTCGGTTTCCACTCCACC 60.667 63.158 0.00 0.00 0.00 4.61
4021 9169 0.666577 CTCGTCGGTTTCCACTCCAC 60.667 60.000 0.00 0.00 0.00 4.02
4022 9170 1.663739 CTCGTCGGTTTCCACTCCA 59.336 57.895 0.00 0.00 0.00 3.86
4023 9171 1.080025 CCTCGTCGGTTTCCACTCC 60.080 63.158 0.00 0.00 0.00 3.85
4024 9172 1.664306 ACCTCGTCGGTTTCCACTC 59.336 57.895 0.00 0.00 46.37 3.51
4025 9173 3.866539 ACCTCGTCGGTTTCCACT 58.133 55.556 0.00 0.00 46.37 4.00
4033 9181 2.383527 GCTTGAGCAACCTCGTCGG 61.384 63.158 0.00 0.00 41.13 4.79
4034 9182 3.159984 GCTTGAGCAACCTCGTCG 58.840 61.111 0.00 0.00 41.13 5.12
4044 9192 3.741476 CCACCGCCTTGCTTGAGC 61.741 66.667 0.00 0.00 42.50 4.26
4045 9193 3.741476 GCCACCGCCTTGCTTGAG 61.741 66.667 0.00 0.00 0.00 3.02
4068 9216 0.727398 GCTACCTCGACAAATGGCAC 59.273 55.000 0.00 0.00 0.00 5.01
4069 9217 0.392461 GGCTACCTCGACAAATGGCA 60.392 55.000 0.00 0.00 0.00 4.92
4070 9218 1.429148 CGGCTACCTCGACAAATGGC 61.429 60.000 0.00 0.00 0.00 4.40
4071 9219 0.174845 TCGGCTACCTCGACAAATGG 59.825 55.000 0.00 0.00 0.00 3.16
4072 9220 1.134367 TCTCGGCTACCTCGACAAATG 59.866 52.381 0.00 0.00 32.86 2.32
4073 9221 1.405821 CTCTCGGCTACCTCGACAAAT 59.594 52.381 0.00 0.00 32.86 2.32
4074 9222 0.809385 CTCTCGGCTACCTCGACAAA 59.191 55.000 0.00 0.00 32.86 2.83
4075 9223 1.654954 GCTCTCGGCTACCTCGACAA 61.655 60.000 0.00 0.00 38.06 3.18
4076 9224 2.113433 GCTCTCGGCTACCTCGACA 61.113 63.158 0.00 0.00 38.06 4.35
4077 9225 2.716864 GCTCTCGGCTACCTCGAC 59.283 66.667 0.00 0.00 38.06 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.