Multiple sequence alignment - TraesCS7D01G541100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G541100 chr7D 100.000 3257 0 0 1 3257 630705677 630708933 0.000000e+00 6015.0
1 TraesCS7D01G541100 chr7D 81.079 1427 146 57 406 1771 630971987 630973350 0.000000e+00 1026.0
2 TraesCS7D01G541100 chr7D 80.000 765 67 38 1046 1757 631336808 631336077 1.360000e-133 486.0
3 TraesCS7D01G541100 chr7D 79.700 601 61 23 406 954 631337412 631336821 8.530000e-101 377.0
4 TraesCS7D01G541100 chr7D 88.722 133 12 2 1673 1805 631336082 631335953 3.360000e-35 159.0
5 TraesCS7D01G541100 chr7D 89.474 57 3 2 1818 1874 630973370 630973423 5.830000e-08 69.4
6 TraesCS7D01G541100 chrUn 88.069 1559 94 46 285 1773 83676020 83674484 0.000000e+00 1764.0
7 TraesCS7D01G541100 chrUn 92.817 529 33 3 1807 2334 83674496 83673972 0.000000e+00 761.0
8 TraesCS7D01G541100 chrUn 90.591 457 35 6 1806 2260 88621275 88621725 1.670000e-167 599.0
9 TraesCS7D01G541100 chrUn 93.583 187 9 2 521 704 88614825 88615011 3.200000e-70 276.0
10 TraesCS7D01G541100 chrUn 87.500 112 14 0 1662 1773 88621177 88621288 2.640000e-26 130.0
11 TraesCS7D01G541100 chr7A 88.519 1472 131 15 1806 3257 726659045 726660498 0.000000e+00 1748.0
12 TraesCS7D01G541100 chr7A 88.519 1472 131 15 1806 3257 726670961 726672414 0.000000e+00 1748.0
13 TraesCS7D01G541100 chr7A 88.205 1382 111 16 1892 3256 726673765 726675111 0.000000e+00 1602.0
14 TraesCS7D01G541100 chr7A 86.492 1488 155 18 1806 3256 726675321 726676799 0.000000e+00 1592.0
15 TraesCS7D01G541100 chr7A 84.958 1549 99 59 322 1773 726657547 726659058 0.000000e+00 1447.0
16 TraesCS7D01G541100 chr7A 84.958 1549 99 59 322 1773 726669463 726670974 0.000000e+00 1447.0
17 TraesCS7D01G541100 chr7A 86.830 1344 82 36 504 1773 727003487 727002165 0.000000e+00 1413.0
18 TraesCS7D01G541100 chr7A 83.398 1024 107 21 2286 3248 727047198 727046177 0.000000e+00 891.0
19 TraesCS7D01G541100 chr7A 91.887 530 42 1 1806 2334 727002178 727001649 0.000000e+00 739.0
20 TraesCS7D01G541100 chr7A 88.517 418 37 4 1877 2294 727048016 727047610 2.260000e-136 496.0
21 TraesCS7D01G541100 chr7A 92.056 214 17 0 1241 1454 726661631 726661844 5.280000e-78 302.0
22 TraesCS7D01G541100 chr7A 83.478 230 24 8 285 507 727003872 727003650 5.510000e-48 202.0
23 TraesCS7D01G541100 chr7A 92.913 127 9 0 1892 2018 726661849 726661975 5.550000e-43 185.0
24 TraesCS7D01G541100 chr7A 94.872 78 4 0 285 362 727004553 727004476 4.410000e-24 122.0
25 TraesCS7D01G541100 chr7A 98.305 59 1 0 1715 1773 726675276 726675334 1.600000e-18 104.0
26 TraesCS7D01G541100 chr7A 100.000 47 0 0 316 362 727004199 727004153 1.610000e-13 87.9
27 TraesCS7D01G541100 chr7B 84.629 1132 101 33 446 1538 733378688 733377591 0.000000e+00 1059.0
28 TraesCS7D01G541100 chr7B 89.150 553 48 9 1808 2353 733377429 733376882 0.000000e+00 678.0
29 TraesCS7D01G541100 chr4A 80.000 175 31 4 2757 2930 638769108 638769279 3.410000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G541100 chr7D 630705677 630708933 3256 False 6015.000000 6015 100.000000 1 3257 1 chr7D.!!$F1 3256
1 TraesCS7D01G541100 chr7D 630971987 630973423 1436 False 547.700000 1026 85.276500 406 1874 2 chr7D.!!$F2 1468
2 TraesCS7D01G541100 chr7D 631335953 631337412 1459 True 340.666667 486 82.807333 406 1805 3 chr7D.!!$R1 1399
3 TraesCS7D01G541100 chrUn 83673972 83676020 2048 True 1262.500000 1764 90.443000 285 2334 2 chrUn.!!$R1 2049
4 TraesCS7D01G541100 chrUn 88621177 88621725 548 False 364.500000 599 89.045500 1662 2260 2 chrUn.!!$F2 598
5 TraesCS7D01G541100 chr7A 726669463 726676799 7336 False 1298.600000 1748 89.295800 322 3257 5 chr7A.!!$F2 2935
6 TraesCS7D01G541100 chr7A 726657547 726661975 4428 False 920.500000 1748 89.611500 322 3257 4 chr7A.!!$F1 2935
7 TraesCS7D01G541100 chr7A 727046177 727048016 1839 True 693.500000 891 85.957500 1877 3248 2 chr7A.!!$R2 1371
8 TraesCS7D01G541100 chr7A 727001649 727004553 2904 True 512.780000 1413 91.413400 285 2334 5 chr7A.!!$R1 2049
9 TraesCS7D01G541100 chr7B 733376882 733378688 1806 True 868.500000 1059 86.889500 446 2353 2 chr7B.!!$R1 1907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.038744 CAAGCATGGAGGGGACTTGT 59.961 55.0 0.0 0.0 44.43 3.16 F
177 178 0.038744 AAGCATGGAGGGGACTTGTG 59.961 55.0 0.0 0.0 44.43 3.33 F
1477 2483 0.112412 TTCCAAACCTCCCTTCTGGC 59.888 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 2472 0.622665 ATTGTCCAGCCAGAAGGGAG 59.377 55.0 0.0 0.0 40.01 4.30 R
1660 2724 0.666274 TGCAGGTCGAAGCGTACAAG 60.666 55.0 0.0 0.0 0.00 3.16 R
2920 7284 0.257328 TGGTCACCTTTTGTCCAGCA 59.743 50.0 0.0 0.0 38.37 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 8.839310 AATAATACTAGCTCCTGCATAAAGTG 57.161 34.615 0.00 0.00 42.74 3.16
66 67 4.361451 CATAAAGTGCACATTCCTGGTC 57.639 45.455 21.04 0.00 0.00 4.02
67 68 2.664402 AAAGTGCACATTCCTGGTCT 57.336 45.000 21.04 0.00 0.00 3.85
68 69 2.664402 AAGTGCACATTCCTGGTCTT 57.336 45.000 21.04 0.00 0.00 3.01
69 70 2.191128 AGTGCACATTCCTGGTCTTC 57.809 50.000 21.04 0.00 0.00 2.87
70 71 0.798776 GTGCACATTCCTGGTCTTCG 59.201 55.000 13.17 0.00 0.00 3.79
71 72 0.684535 TGCACATTCCTGGTCTTCGA 59.315 50.000 0.00 0.00 0.00 3.71
72 73 1.278985 TGCACATTCCTGGTCTTCGAT 59.721 47.619 0.00 0.00 0.00 3.59
73 74 2.499693 TGCACATTCCTGGTCTTCGATA 59.500 45.455 0.00 0.00 0.00 2.92
74 75 3.134623 TGCACATTCCTGGTCTTCGATAT 59.865 43.478 0.00 0.00 0.00 1.63
75 76 3.496130 GCACATTCCTGGTCTTCGATATG 59.504 47.826 0.00 0.00 0.00 1.78
76 77 4.697514 CACATTCCTGGTCTTCGATATGT 58.302 43.478 0.00 0.00 0.00 2.29
77 78 4.747108 CACATTCCTGGTCTTCGATATGTC 59.253 45.833 0.00 0.00 0.00 3.06
78 79 4.405680 ACATTCCTGGTCTTCGATATGTCA 59.594 41.667 0.00 0.00 0.00 3.58
79 80 4.386867 TTCCTGGTCTTCGATATGTCAC 57.613 45.455 0.00 0.00 0.00 3.67
80 81 2.357952 TCCTGGTCTTCGATATGTCACG 59.642 50.000 0.00 0.00 0.00 4.35
81 82 2.099263 CCTGGTCTTCGATATGTCACGT 59.901 50.000 0.00 0.00 0.00 4.49
82 83 3.314357 CCTGGTCTTCGATATGTCACGTA 59.686 47.826 0.00 0.00 0.00 3.57
83 84 4.528504 CTGGTCTTCGATATGTCACGTAG 58.471 47.826 0.00 0.00 0.00 3.51
84 85 3.242969 TGGTCTTCGATATGTCACGTAGC 60.243 47.826 0.00 0.00 0.00 3.58
85 86 3.242969 GGTCTTCGATATGTCACGTAGCA 60.243 47.826 0.00 0.00 0.00 3.49
86 87 4.537965 GTCTTCGATATGTCACGTAGCAT 58.462 43.478 8.70 8.70 0.00 3.79
87 88 4.976731 GTCTTCGATATGTCACGTAGCATT 59.023 41.667 8.92 0.00 0.00 3.56
88 89 6.140786 GTCTTCGATATGTCACGTAGCATTA 58.859 40.000 8.92 0.00 0.00 1.90
89 90 6.303496 GTCTTCGATATGTCACGTAGCATTAG 59.697 42.308 8.92 3.11 0.00 1.73
90 91 4.473199 TCGATATGTCACGTAGCATTAGC 58.527 43.478 8.92 0.00 42.56 3.09
112 113 7.277174 AGCTACTATTTTGTTTATCCATGCC 57.723 36.000 0.00 0.00 0.00 4.40
113 114 7.062957 AGCTACTATTTTGTTTATCCATGCCT 58.937 34.615 0.00 0.00 0.00 4.75
114 115 7.013655 AGCTACTATTTTGTTTATCCATGCCTG 59.986 37.037 0.00 0.00 0.00 4.85
115 116 6.469782 ACTATTTTGTTTATCCATGCCTGG 57.530 37.500 0.78 0.78 44.64 4.45
116 117 5.957774 ACTATTTTGTTTATCCATGCCTGGT 59.042 36.000 7.98 0.00 43.61 4.00
117 118 4.533919 TTTTGTTTATCCATGCCTGGTG 57.466 40.909 7.98 0.00 43.61 4.17
118 119 3.448093 TTGTTTATCCATGCCTGGTGA 57.552 42.857 7.98 0.00 43.61 4.02
119 120 3.003394 TGTTTATCCATGCCTGGTGAG 57.997 47.619 7.98 0.00 43.61 3.51
120 121 2.308570 TGTTTATCCATGCCTGGTGAGT 59.691 45.455 7.98 0.00 43.61 3.41
121 122 3.521531 TGTTTATCCATGCCTGGTGAGTA 59.478 43.478 7.98 0.00 43.61 2.59
122 123 4.130118 GTTTATCCATGCCTGGTGAGTAG 58.870 47.826 7.98 0.00 43.61 2.57
123 124 2.180946 ATCCATGCCTGGTGAGTAGA 57.819 50.000 7.98 0.00 43.61 2.59
124 125 1.489481 TCCATGCCTGGTGAGTAGAG 58.511 55.000 7.98 0.00 43.61 2.43
125 126 1.007118 TCCATGCCTGGTGAGTAGAGA 59.993 52.381 7.98 0.00 43.61 3.10
126 127 2.045524 CCATGCCTGGTGAGTAGAGAT 58.954 52.381 0.00 0.00 37.79 2.75
127 128 3.117131 TCCATGCCTGGTGAGTAGAGATA 60.117 47.826 7.98 0.00 43.61 1.98
128 129 3.837146 CCATGCCTGGTGAGTAGAGATAT 59.163 47.826 0.00 0.00 37.79 1.63
129 130 4.322574 CCATGCCTGGTGAGTAGAGATATG 60.323 50.000 0.00 0.00 37.79 1.78
130 131 3.916035 TGCCTGGTGAGTAGAGATATGT 58.084 45.455 0.00 0.00 0.00 2.29
131 132 5.061721 TGCCTGGTGAGTAGAGATATGTA 57.938 43.478 0.00 0.00 0.00 2.29
132 133 5.645201 TGCCTGGTGAGTAGAGATATGTAT 58.355 41.667 0.00 0.00 0.00 2.29
133 134 6.077993 TGCCTGGTGAGTAGAGATATGTATT 58.922 40.000 0.00 0.00 0.00 1.89
134 135 6.554982 TGCCTGGTGAGTAGAGATATGTATTT 59.445 38.462 0.00 0.00 0.00 1.40
135 136 6.870965 GCCTGGTGAGTAGAGATATGTATTTG 59.129 42.308 0.00 0.00 0.00 2.32
136 137 7.472100 GCCTGGTGAGTAGAGATATGTATTTGT 60.472 40.741 0.00 0.00 0.00 2.83
137 138 9.078990 CCTGGTGAGTAGAGATATGTATTTGTA 57.921 37.037 0.00 0.00 0.00 2.41
139 140 8.577296 TGGTGAGTAGAGATATGTATTTGTAGC 58.423 37.037 0.00 0.00 0.00 3.58
140 141 8.030106 GGTGAGTAGAGATATGTATTTGTAGCC 58.970 40.741 0.00 0.00 0.00 3.93
141 142 8.577296 GTGAGTAGAGATATGTATTTGTAGCCA 58.423 37.037 0.00 0.00 0.00 4.75
142 143 9.314133 TGAGTAGAGATATGTATTTGTAGCCAT 57.686 33.333 0.00 0.00 0.00 4.40
145 146 9.522804 GTAGAGATATGTATTTGTAGCCATAGC 57.477 37.037 0.00 0.00 40.32 2.97
146 147 7.560368 AGAGATATGTATTTGTAGCCATAGCC 58.440 38.462 0.00 0.00 41.25 3.93
147 148 6.653989 AGATATGTATTTGTAGCCATAGCCC 58.346 40.000 0.00 0.00 41.25 5.19
148 149 6.445139 AGATATGTATTTGTAGCCATAGCCCT 59.555 38.462 0.00 0.00 41.25 5.19
149 150 4.788925 TGTATTTGTAGCCATAGCCCTT 57.211 40.909 0.00 0.00 41.25 3.95
150 151 5.897851 TGTATTTGTAGCCATAGCCCTTA 57.102 39.130 0.00 0.00 41.25 2.69
151 152 5.865085 TGTATTTGTAGCCATAGCCCTTAG 58.135 41.667 0.00 0.00 41.25 2.18
152 153 3.857157 TTTGTAGCCATAGCCCTTAGG 57.143 47.619 0.00 0.00 41.25 2.69
175 176 2.877975 CAAGCATGGAGGGGACTTG 58.122 57.895 0.00 0.00 44.43 3.16
176 177 0.038744 CAAGCATGGAGGGGACTTGT 59.961 55.000 0.00 0.00 44.43 3.16
177 178 0.038744 AAGCATGGAGGGGACTTGTG 59.961 55.000 0.00 0.00 44.43 3.33
178 179 1.136329 AGCATGGAGGGGACTTGTGT 61.136 55.000 0.00 0.00 44.43 3.72
179 180 0.618458 GCATGGAGGGGACTTGTGTA 59.382 55.000 0.00 0.00 44.43 2.90
180 181 1.004277 GCATGGAGGGGACTTGTGTAA 59.996 52.381 0.00 0.00 44.43 2.41
181 182 2.711542 CATGGAGGGGACTTGTGTAAC 58.288 52.381 0.00 0.00 44.43 2.50
206 207 9.631257 ACATAATACCAGAATTTCATGTCATGA 57.369 29.630 11.62 11.62 37.55 3.07
207 208 9.888878 CATAATACCAGAATTTCATGTCATGAC 57.111 33.333 19.27 19.27 39.39 3.06
208 209 7.943079 AATACCAGAATTTCATGTCATGACA 57.057 32.000 29.67 29.67 46.44 3.58
209 210 5.633830 ACCAGAATTTCATGTCATGACAC 57.366 39.130 30.09 15.53 45.05 3.67
210 211 5.072055 ACCAGAATTTCATGTCATGACACA 58.928 37.500 30.09 17.10 45.05 3.72
211 212 5.713389 ACCAGAATTTCATGTCATGACACAT 59.287 36.000 30.09 13.46 45.05 3.21
221 222 4.754372 GTCATGACACATGACAACACAT 57.246 40.909 28.37 0.00 45.61 3.21
222 223 5.112220 GTCATGACACATGACAACACATT 57.888 39.130 28.37 0.00 45.61 2.71
223 224 5.522456 GTCATGACACATGACAACACATTT 58.478 37.500 28.37 0.00 45.61 2.32
224 225 5.978919 GTCATGACACATGACAACACATTTT 59.021 36.000 28.37 0.00 45.61 1.82
225 226 6.142798 GTCATGACACATGACAACACATTTTC 59.857 38.462 28.37 7.18 45.61 2.29
226 227 5.833406 TGACACATGACAACACATTTTCT 57.167 34.783 0.00 0.00 0.00 2.52
227 228 5.820131 TGACACATGACAACACATTTTCTC 58.180 37.500 0.00 0.00 0.00 2.87
228 229 5.589855 TGACACATGACAACACATTTTCTCT 59.410 36.000 0.00 0.00 0.00 3.10
229 230 6.765512 TGACACATGACAACACATTTTCTCTA 59.234 34.615 0.00 0.00 0.00 2.43
230 231 7.041848 TGACACATGACAACACATTTTCTCTAG 60.042 37.037 0.00 0.00 0.00 2.43
231 232 6.082338 CACATGACAACACATTTTCTCTAGC 58.918 40.000 0.00 0.00 0.00 3.42
232 233 6.000219 ACATGACAACACATTTTCTCTAGCT 59.000 36.000 0.00 0.00 0.00 3.32
233 234 7.118245 CACATGACAACACATTTTCTCTAGCTA 59.882 37.037 0.00 0.00 0.00 3.32
234 235 7.826252 ACATGACAACACATTTTCTCTAGCTAT 59.174 33.333 0.00 0.00 0.00 2.97
235 236 7.601073 TGACAACACATTTTCTCTAGCTATG 57.399 36.000 0.00 0.00 0.00 2.23
236 237 7.386059 TGACAACACATTTTCTCTAGCTATGA 58.614 34.615 0.00 0.00 0.00 2.15
237 238 8.043113 TGACAACACATTTTCTCTAGCTATGAT 58.957 33.333 0.00 0.00 0.00 2.45
238 239 8.430801 ACAACACATTTTCTCTAGCTATGATC 57.569 34.615 0.00 0.00 0.00 2.92
239 240 8.263640 ACAACACATTTTCTCTAGCTATGATCT 58.736 33.333 0.00 0.00 0.00 2.75
240 241 8.763356 CAACACATTTTCTCTAGCTATGATCTC 58.237 37.037 0.00 0.00 0.00 2.75
241 242 8.016301 ACACATTTTCTCTAGCTATGATCTCA 57.984 34.615 0.00 0.00 0.00 3.27
242 243 8.481314 ACACATTTTCTCTAGCTATGATCTCAA 58.519 33.333 0.00 0.00 0.00 3.02
243 244 8.763356 CACATTTTCTCTAGCTATGATCTCAAC 58.237 37.037 0.00 0.00 0.00 3.18
244 245 8.481314 ACATTTTCTCTAGCTATGATCTCAACA 58.519 33.333 0.00 0.00 0.00 3.33
245 246 9.322773 CATTTTCTCTAGCTATGATCTCAACAA 57.677 33.333 0.00 0.00 0.00 2.83
246 247 8.709386 TTTTCTCTAGCTATGATCTCAACAAC 57.291 34.615 0.00 0.00 0.00 3.32
247 248 6.398234 TCTCTAGCTATGATCTCAACAACC 57.602 41.667 0.00 0.00 0.00 3.77
248 249 5.303078 TCTCTAGCTATGATCTCAACAACCC 59.697 44.000 0.00 0.00 0.00 4.11
249 250 5.211973 TCTAGCTATGATCTCAACAACCCT 58.788 41.667 0.00 0.00 0.00 4.34
250 251 6.373759 TCTAGCTATGATCTCAACAACCCTA 58.626 40.000 0.00 0.00 0.00 3.53
251 252 7.013220 TCTAGCTATGATCTCAACAACCCTAT 58.987 38.462 0.00 0.00 0.00 2.57
252 253 5.862845 AGCTATGATCTCAACAACCCTATG 58.137 41.667 0.00 0.00 0.00 2.23
253 254 4.999950 GCTATGATCTCAACAACCCTATGG 59.000 45.833 0.00 0.00 37.80 2.74
254 255 3.281727 TGATCTCAACAACCCTATGGC 57.718 47.619 0.00 0.00 33.59 4.40
255 256 2.846206 TGATCTCAACAACCCTATGGCT 59.154 45.455 0.00 0.00 33.59 4.75
256 257 3.118261 TGATCTCAACAACCCTATGGCTC 60.118 47.826 0.00 0.00 33.59 4.70
257 258 2.265367 TCTCAACAACCCTATGGCTCA 58.735 47.619 0.00 0.00 33.59 4.26
258 259 2.237143 TCTCAACAACCCTATGGCTCAG 59.763 50.000 0.00 0.00 33.59 3.35
259 260 1.985159 TCAACAACCCTATGGCTCAGT 59.015 47.619 0.00 0.00 33.59 3.41
260 261 3.178046 TCAACAACCCTATGGCTCAGTA 58.822 45.455 0.00 0.00 33.59 2.74
261 262 3.055385 TCAACAACCCTATGGCTCAGTAC 60.055 47.826 0.00 0.00 33.59 2.73
262 263 1.838077 ACAACCCTATGGCTCAGTACC 59.162 52.381 0.00 0.00 33.59 3.34
263 264 1.837439 CAACCCTATGGCTCAGTACCA 59.163 52.381 0.00 0.00 42.61 3.25
264 265 1.794714 ACCCTATGGCTCAGTACCAG 58.205 55.000 0.00 0.00 41.46 4.00
265 266 1.291033 ACCCTATGGCTCAGTACCAGA 59.709 52.381 0.00 0.00 41.46 3.86
266 267 1.689273 CCCTATGGCTCAGTACCAGAC 59.311 57.143 0.00 0.00 41.46 3.51
267 268 2.672098 CCTATGGCTCAGTACCAGACT 58.328 52.381 0.00 0.00 41.46 3.24
268 269 3.034635 CCTATGGCTCAGTACCAGACTT 58.965 50.000 0.00 0.00 41.46 3.01
269 270 3.452627 CCTATGGCTCAGTACCAGACTTT 59.547 47.826 0.00 0.00 41.46 2.66
270 271 4.649674 CCTATGGCTCAGTACCAGACTTTA 59.350 45.833 0.00 0.00 41.46 1.85
271 272 5.305644 CCTATGGCTCAGTACCAGACTTTAT 59.694 44.000 0.00 0.00 41.46 1.40
272 273 5.700402 ATGGCTCAGTACCAGACTTTATT 57.300 39.130 0.00 0.00 41.46 1.40
273 274 4.832248 TGGCTCAGTACCAGACTTTATTG 58.168 43.478 0.00 0.00 35.64 1.90
274 275 4.286032 TGGCTCAGTACCAGACTTTATTGT 59.714 41.667 0.00 0.00 35.64 2.71
275 276 5.482526 TGGCTCAGTACCAGACTTTATTGTA 59.517 40.000 0.00 0.00 35.64 2.41
276 277 6.156256 TGGCTCAGTACCAGACTTTATTGTAT 59.844 38.462 0.00 0.00 35.64 2.29
277 278 6.480320 GGCTCAGTACCAGACTTTATTGTATG 59.520 42.308 0.00 0.00 35.64 2.39
278 279 7.265673 GCTCAGTACCAGACTTTATTGTATGA 58.734 38.462 0.00 0.00 35.64 2.15
279 280 7.928706 GCTCAGTACCAGACTTTATTGTATGAT 59.071 37.037 0.00 0.00 35.64 2.45
280 281 9.254133 CTCAGTACCAGACTTTATTGTATGATG 57.746 37.037 0.00 0.00 35.64 3.07
281 282 7.710907 TCAGTACCAGACTTTATTGTATGATGC 59.289 37.037 0.00 0.00 35.64 3.91
282 283 7.712639 CAGTACCAGACTTTATTGTATGATGCT 59.287 37.037 0.00 0.00 35.64 3.79
283 284 8.267894 AGTACCAGACTTTATTGTATGATGCTT 58.732 33.333 0.00 0.00 33.13 3.91
292 293 3.751479 TGTATGATGCTTCCGCTATGT 57.249 42.857 0.00 0.00 36.97 2.29
297 298 2.168313 TGATGCTTCCGCTATGTCTTGA 59.832 45.455 0.00 0.00 36.97 3.02
299 300 1.275010 TGCTTCCGCTATGTCTTGACA 59.725 47.619 5.89 5.89 36.97 3.58
314 315 5.769662 TGTCTTGACAGCAATACATTTCCTT 59.230 36.000 0.00 0.00 36.54 3.36
375 693 6.094048 GCCTTTGAGTAAGAGTAATGCATTCA 59.906 38.462 16.86 1.05 35.80 2.57
378 696 5.118990 TGAGTAAGAGTAATGCATTCAGGC 58.881 41.667 16.86 5.23 0.00 4.85
383 1062 2.481952 GAGTAATGCATTCAGGCGATCC 59.518 50.000 16.86 0.00 36.28 3.36
388 1067 0.602372 GCATTCAGGCGATCCTCTCC 60.602 60.000 0.00 0.00 41.93 3.71
394 1073 3.934962 GCGATCCTCTCCCCCAGC 61.935 72.222 0.00 0.00 0.00 4.85
397 1076 3.758133 GATCCTCTCCCCCAGCGGA 62.758 68.421 0.00 0.00 40.48 5.54
398 1077 3.106859 ATCCTCTCCCCCAGCGGAT 62.107 63.158 0.00 0.00 40.59 4.18
399 1078 3.554342 CCTCTCCCCCAGCGGATG 61.554 72.222 0.00 0.00 0.00 3.51
400 1079 2.444706 CTCTCCCCCAGCGGATGA 60.445 66.667 0.00 0.00 0.00 2.92
401 1080 2.040442 TCTCCCCCAGCGGATGAA 59.960 61.111 0.00 0.00 0.00 2.57
403 1082 1.228063 CTCCCCCAGCGGATGAATG 60.228 63.158 0.00 0.00 0.00 2.67
481 1178 5.945784 TCCGAAAATTTGATGGAAGAGTCAT 59.054 36.000 4.34 0.00 0.00 3.06
507 1370 1.212688 TGACATCCCCAAGCTGGTATG 59.787 52.381 0.00 0.56 35.17 2.39
625 1490 5.690865 TGGAATAATACCTTCCATGGACAC 58.309 41.667 15.91 0.00 45.56 3.67
627 1492 6.126409 GGAATAATACCTTCCATGGACACAA 58.874 40.000 15.91 0.00 41.55 3.33
709 1579 5.595952 GTCTTCCTGGAATGGAATATGCTTT 59.404 40.000 10.03 0.00 44.17 3.51
710 1580 5.595542 TCTTCCTGGAATGGAATATGCTTTG 59.404 40.000 10.03 0.00 44.17 2.77
809 1721 0.974383 CCAAAGTCCACCGTACCTCT 59.026 55.000 0.00 0.00 0.00 3.69
812 1724 1.254954 AAGTCCACCGTACCTCTCAC 58.745 55.000 0.00 0.00 0.00 3.51
834 1767 8.727100 TCACATGGATAATATAGTCAGTTCCT 57.273 34.615 0.00 0.00 0.00 3.36
939 1881 2.112297 GTTGCCTCCCCACAACGA 59.888 61.111 0.00 0.00 37.08 3.85
964 1922 5.844004 ACCGTATCTCCATTAAAGTAGCTG 58.156 41.667 0.00 0.00 0.00 4.24
965 1923 5.597182 ACCGTATCTCCATTAAAGTAGCTGA 59.403 40.000 0.00 0.00 0.00 4.26
982 1940 4.691860 GCTGAGAGAGCTTGCATTTTTA 57.308 40.909 0.00 0.00 45.21 1.52
1230 2207 2.549064 TCATCATCCGCCATAAGGTG 57.451 50.000 0.00 0.00 45.25 4.00
1245 2243 2.496899 AGGTGCCTACTGTTGATTGG 57.503 50.000 0.00 0.00 0.00 3.16
1271 2277 8.391106 GGAAAATATACTGAAACAGTGCAGTAG 58.609 37.037 17.08 0.00 46.96 2.57
1289 2295 5.508489 GCAGTAGCCTGTAACGGATGTAATA 60.508 44.000 0.00 0.00 41.02 0.98
1294 2300 7.316544 AGCCTGTAACGGATGTAATAAAAAG 57.683 36.000 0.00 0.00 0.00 2.27
1462 2468 3.452990 TCAACTACACAGGTCTGTTTCCA 59.547 43.478 0.20 0.00 42.83 3.53
1463 2469 4.080807 TCAACTACACAGGTCTGTTTCCAA 60.081 41.667 0.20 0.00 42.83 3.53
1464 2470 4.497291 ACTACACAGGTCTGTTTCCAAA 57.503 40.909 0.20 0.00 42.83 3.28
1465 2471 4.196971 ACTACACAGGTCTGTTTCCAAAC 58.803 43.478 0.20 0.00 42.83 2.93
1466 2472 2.375146 ACACAGGTCTGTTTCCAAACC 58.625 47.619 0.20 0.00 42.83 3.27
1477 2483 0.112412 TTCCAAACCTCCCTTCTGGC 59.888 55.000 0.00 0.00 0.00 4.85
1478 2484 0.772124 TCCAAACCTCCCTTCTGGCT 60.772 55.000 0.00 0.00 0.00 4.75
1479 2485 0.610232 CCAAACCTCCCTTCTGGCTG 60.610 60.000 0.00 0.00 0.00 4.85
1480 2486 0.610232 CAAACCTCCCTTCTGGCTGG 60.610 60.000 0.00 0.00 34.74 4.85
1481 2487 0.772124 AAACCTCCCTTCTGGCTGGA 60.772 55.000 0.00 0.00 33.40 3.86
1530 2567 1.864565 AACATTTTTGGGCACGCTTC 58.135 45.000 0.00 0.00 0.00 3.86
1611 2675 4.558538 ATTCAGAGCTTCACACAAACAC 57.441 40.909 0.00 0.00 0.00 3.32
1660 2724 9.122613 CTGCTTTAACTTTCTCATAGAAAAAGC 57.877 33.333 19.81 19.81 45.38 3.51
1682 2762 0.179134 GTACGCTTCGACCTGCAGAT 60.179 55.000 17.39 0.00 0.00 2.90
1692 2855 2.550606 CGACCTGCAGATACTAGTCTCC 59.449 54.545 17.39 0.00 0.00 3.71
1759 2922 2.749621 CAACTGGTCTTATGACTTGGCC 59.250 50.000 8.51 0.00 42.54 5.36
1760 2923 1.985159 ACTGGTCTTATGACTTGGCCA 59.015 47.619 0.00 0.00 42.54 5.36
1761 2924 2.375174 ACTGGTCTTATGACTTGGCCAA 59.625 45.455 19.25 19.25 42.54 4.52
1762 2925 3.012518 CTGGTCTTATGACTTGGCCAAG 58.987 50.000 38.30 38.30 42.54 3.61
1763 2926 2.642311 TGGTCTTATGACTTGGCCAAGA 59.358 45.455 44.50 27.96 42.54 3.02
1764 2927 3.266772 TGGTCTTATGACTTGGCCAAGAT 59.733 43.478 44.50 31.68 42.54 2.40
1765 2928 3.879892 GGTCTTATGACTTGGCCAAGATC 59.120 47.826 44.50 34.73 42.54 2.75
1766 2929 4.517285 GTCTTATGACTTGGCCAAGATCA 58.483 43.478 44.50 38.00 40.79 2.92
1767 2930 5.128919 GTCTTATGACTTGGCCAAGATCAT 58.871 41.667 44.50 40.07 40.79 2.45
1768 2931 5.591877 GTCTTATGACTTGGCCAAGATCATT 59.408 40.000 38.86 29.74 40.79 2.57
1769 2932 5.591472 TCTTATGACTTGGCCAAGATCATTG 59.409 40.000 38.86 33.21 40.79 2.82
1770 2933 3.438216 TGACTTGGCCAAGATCATTGA 57.562 42.857 44.50 19.24 40.79 2.57
1771 2934 3.765381 TGACTTGGCCAAGATCATTGAA 58.235 40.909 44.50 21.39 40.79 2.69
1772 2935 3.507233 TGACTTGGCCAAGATCATTGAAC 59.493 43.478 44.50 23.82 40.79 3.18
1773 2936 3.760684 GACTTGGCCAAGATCATTGAACT 59.239 43.478 44.50 22.91 40.79 3.01
1774 2937 4.154942 ACTTGGCCAAGATCATTGAACTT 58.845 39.130 44.50 20.04 40.79 2.66
1775 2938 4.590222 ACTTGGCCAAGATCATTGAACTTT 59.410 37.500 44.50 19.84 40.79 2.66
1776 2939 5.070847 ACTTGGCCAAGATCATTGAACTTTT 59.929 36.000 44.50 19.41 40.79 2.27
1777 2940 5.549742 TGGCCAAGATCATTGAACTTTTT 57.450 34.783 0.61 0.00 0.00 1.94
1837 3024 3.670311 ACATCTAGTGCTACACGTACG 57.330 47.619 15.01 15.01 39.64 3.67
1985 3172 2.512515 GTGCGAGGAGACCATGGC 60.513 66.667 13.04 4.70 0.00 4.40
2018 3205 1.145156 CCGACAACAGTGGTGACCA 59.855 57.895 16.89 0.00 0.00 4.02
2048 3235 3.349006 GTGCTGCACCGACACTGG 61.349 66.667 21.78 0.00 0.00 4.00
2065 3252 1.900498 GGCATGGCTCCTATGGCAC 60.900 63.158 12.86 0.00 46.71 5.01
2271 3469 3.070878 TGGTTTGACAGAGTGCATGAGTA 59.929 43.478 0.00 0.00 0.00 2.59
2284 3902 8.361139 AGAGTGCATGAGTATAATTGTAGGTAC 58.639 37.037 0.00 0.00 0.00 3.34
2338 3956 8.880265 CGATTATATGATACGAGTAACGCATAC 58.120 37.037 0.00 0.00 46.94 2.39
2388 4010 8.579682 AGAAAAGCCGCAAATATAATTGATTC 57.420 30.769 4.66 0.07 31.84 2.52
2392 4015 8.947055 AAGCCGCAAATATAATTGATTCTTTT 57.053 26.923 4.66 0.00 31.84 2.27
2411 4034 8.574196 TTCTTTTAAAGAAAACAGTAGCATGC 57.426 30.769 16.64 10.51 44.10 4.06
2494 4117 5.865552 CGATCATCTTTTGCCTTCAATTGTT 59.134 36.000 5.13 0.00 31.33 2.83
2500 4123 3.815856 TTGCCTTCAATTGTTTGCTGA 57.184 38.095 5.13 0.00 32.61 4.26
2523 4146 3.984633 CCGCCGAAGCTTAAAAATTTCAA 59.015 39.130 0.00 0.00 36.60 2.69
2526 4149 6.309251 CCGCCGAAGCTTAAAAATTTCAATAA 59.691 34.615 0.00 0.00 36.60 1.40
2547 4170 2.437895 GGTGGTAAGCGGAAGGGC 60.438 66.667 0.00 0.00 0.00 5.19
2600 4223 3.093814 TGAAGACCGTAATAGCCACTCA 58.906 45.455 0.00 0.00 0.00 3.41
2603 4226 0.458669 ACCGTAATAGCCACTCACCG 59.541 55.000 0.00 0.00 0.00 4.94
2612 4235 1.019805 GCCACTCACCGCTAGAAACC 61.020 60.000 0.00 0.00 0.00 3.27
2657 4280 9.885743 CGTGAAAAAGTTTGAAGTTGAAATAAG 57.114 29.630 0.00 0.00 0.00 1.73
2691 4314 1.649390 TTGTGTGTGAAAAGCGGCGT 61.649 50.000 9.37 0.00 0.00 5.68
2726 4372 1.570813 CATGATACTTCGCCGCAGAA 58.429 50.000 0.00 0.00 0.00 3.02
2777 4423 3.181468 TGAAGTGCATCATGTTTTTGCCA 60.181 39.130 0.00 0.00 35.51 4.92
2781 4427 4.931002 AGTGCATCATGTTTTTGCCATAAC 59.069 37.500 0.00 0.00 35.51 1.89
2842 4488 3.705051 AGACATCATGCCAAGTTCCATT 58.295 40.909 0.00 0.00 0.00 3.16
2855 7219 6.404293 GCCAAGTTCCATTAATTTCGAAGCTA 60.404 38.462 0.00 0.00 0.00 3.32
2863 7227 6.251376 CCATTAATTTCGAAGCTAGTTTGCAC 59.749 38.462 0.00 0.00 34.99 4.57
2877 7241 6.347888 GCTAGTTTGCACGTTATTTGGAACTA 60.348 38.462 0.00 0.00 0.00 2.24
2889 7253 7.377662 CGTTATTTGGAACTAAAGAGCGTTTTT 59.622 33.333 6.43 0.00 33.08 1.94
2891 7255 4.823790 TGGAACTAAAGAGCGTTTTTCC 57.176 40.909 9.48 9.48 0.00 3.13
2908 7272 6.426633 CGTTTTTCCCTTTTTAATTGCTGGAT 59.573 34.615 0.00 0.00 0.00 3.41
2922 7286 9.748708 TTAATTGCTGGATAATCAGTTAATTGC 57.251 29.630 13.75 0.00 36.00 3.56
2924 7288 6.381481 TGCTGGATAATCAGTTAATTGCTG 57.619 37.500 5.74 5.74 37.12 4.41
3006 7385 7.749539 AAAAGTTTGAAGTTGAAATGTACCG 57.250 32.000 0.00 0.00 0.00 4.02
3011 7390 8.126700 AGTTTGAAGTTGAAATGTACCGTAAAG 58.873 33.333 0.00 0.00 0.00 1.85
3018 7397 5.366460 TGAAATGTACCGTAAAGACAACCA 58.634 37.500 0.00 0.00 0.00 3.67
3020 7399 5.934935 AATGTACCGTAAAGACAACCAAG 57.065 39.130 0.00 0.00 0.00 3.61
3027 7406 6.235664 ACCGTAAAGACAACCAAGACAATAT 58.764 36.000 0.00 0.00 0.00 1.28
3075 7454 8.680903 CATAGCACTTCCAAAACATAGATCTTT 58.319 33.333 0.00 0.00 0.00 2.52
3077 7456 5.574443 GCACTTCCAAAACATAGATCTTTGC 59.426 40.000 12.51 0.00 0.00 3.68
3083 7462 0.532862 ACATAGATCTTTGCCGCCCG 60.533 55.000 12.51 0.00 0.00 6.13
3087 7466 2.033448 ATCTTTGCCGCCCGTCAA 59.967 55.556 0.00 0.00 0.00 3.18
3097 7476 2.461110 GCCCGTCAATGCTACCACG 61.461 63.158 0.00 0.00 0.00 4.94
3102 7481 0.953471 GTCAATGCTACCACGCACCA 60.953 55.000 0.00 0.00 43.61 4.17
3108 7487 1.451387 CTACCACGCACCATTCCCC 60.451 63.158 0.00 0.00 0.00 4.81
3113 7492 2.519302 CGCACCATTCCCCATCCC 60.519 66.667 0.00 0.00 0.00 3.85
3131 7510 5.105595 CCATCCCAAAATTTCAGAGAACTCC 60.106 44.000 0.00 0.00 0.00 3.85
3145 7524 3.442076 AGAACTCCCACTCGACCTATTT 58.558 45.455 0.00 0.00 0.00 1.40
3146 7525 3.195825 AGAACTCCCACTCGACCTATTTG 59.804 47.826 0.00 0.00 0.00 2.32
3168 7547 1.825281 TTGGCCAAATCAAAGCCCGG 61.825 55.000 17.98 0.00 46.55 5.73
3178 7557 2.754465 TCAAAGCCCGGACTAGGAATA 58.246 47.619 0.73 0.00 0.00 1.75
3185 7564 2.317040 CCGGACTAGGAATAGAAGGCA 58.683 52.381 0.00 0.00 0.00 4.75
3194 7573 2.300437 GGAATAGAAGGCAGCGACCTAT 59.700 50.000 0.58 0.00 39.93 2.57
3196 7575 4.381079 GGAATAGAAGGCAGCGACCTATAG 60.381 50.000 0.58 0.00 39.93 1.31
3249 9317 1.677966 TCGTTGGTCCTCCTCCTCG 60.678 63.158 0.00 0.00 34.23 4.63
3256 9324 1.038681 GTCCTCCTCCTCGTCTTCCC 61.039 65.000 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.277783 CACTTTATGCAGGAGCTAGTATTATTT 57.722 33.333 0.00 0.00 42.74 1.40
28 29 8.839310 CACTTTATGCAGGAGCTAGTATTATT 57.161 34.615 0.00 0.00 42.74 1.40
45 46 4.012374 AGACCAGGAATGTGCACTTTATG 58.988 43.478 19.41 17.87 0.00 1.90
46 47 4.307032 AGACCAGGAATGTGCACTTTAT 57.693 40.909 19.41 7.55 0.00 1.40
47 48 3.788227 AGACCAGGAATGTGCACTTTA 57.212 42.857 19.41 0.00 0.00 1.85
48 49 2.664402 AGACCAGGAATGTGCACTTT 57.336 45.000 19.41 18.17 0.00 2.66
49 50 2.508526 GAAGACCAGGAATGTGCACTT 58.491 47.619 19.41 9.21 0.00 3.16
50 51 1.609061 CGAAGACCAGGAATGTGCACT 60.609 52.381 19.41 0.00 0.00 4.40
51 52 0.798776 CGAAGACCAGGAATGTGCAC 59.201 55.000 10.75 10.75 0.00 4.57
52 53 0.684535 TCGAAGACCAGGAATGTGCA 59.315 50.000 0.00 0.00 0.00 4.57
53 54 2.029838 ATCGAAGACCAGGAATGTGC 57.970 50.000 0.00 0.00 42.51 4.57
54 55 4.697514 ACATATCGAAGACCAGGAATGTG 58.302 43.478 0.00 0.00 42.51 3.21
55 56 4.405680 TGACATATCGAAGACCAGGAATGT 59.594 41.667 0.00 0.00 42.51 2.71
56 57 4.747108 GTGACATATCGAAGACCAGGAATG 59.253 45.833 0.00 0.00 42.51 2.67
57 58 4.499865 CGTGACATATCGAAGACCAGGAAT 60.500 45.833 0.00 0.00 42.51 3.01
58 59 3.181490 CGTGACATATCGAAGACCAGGAA 60.181 47.826 0.00 0.00 42.51 3.36
59 60 2.357952 CGTGACATATCGAAGACCAGGA 59.642 50.000 0.00 0.00 42.51 3.86
60 61 2.099263 ACGTGACATATCGAAGACCAGG 59.901 50.000 0.00 0.00 42.51 4.45
61 62 3.422417 ACGTGACATATCGAAGACCAG 57.578 47.619 0.00 0.00 42.51 4.00
62 63 3.242969 GCTACGTGACATATCGAAGACCA 60.243 47.826 0.00 0.00 42.51 4.02
63 64 3.242969 TGCTACGTGACATATCGAAGACC 60.243 47.826 0.00 0.00 42.51 3.85
64 65 3.948851 TGCTACGTGACATATCGAAGAC 58.051 45.455 0.00 0.00 42.51 3.01
65 66 4.830826 ATGCTACGTGACATATCGAAGA 57.169 40.909 0.00 0.00 45.75 2.87
66 67 5.059832 GCTAATGCTACGTGACATATCGAAG 59.940 44.000 0.00 0.00 36.03 3.79
67 68 4.915667 GCTAATGCTACGTGACATATCGAA 59.084 41.667 0.00 0.00 36.03 3.71
68 69 4.473199 GCTAATGCTACGTGACATATCGA 58.527 43.478 0.00 0.00 36.03 3.59
69 70 4.807754 GCTAATGCTACGTGACATATCG 57.192 45.455 0.00 0.00 36.03 2.92
86 87 8.846211 GGCATGGATAAACAAAATAGTAGCTAA 58.154 33.333 0.00 0.00 0.00 3.09
87 88 8.217799 AGGCATGGATAAACAAAATAGTAGCTA 58.782 33.333 0.00 0.00 0.00 3.32
88 89 7.013655 CAGGCATGGATAAACAAAATAGTAGCT 59.986 37.037 0.00 0.00 0.00 3.32
89 90 7.141363 CAGGCATGGATAAACAAAATAGTAGC 58.859 38.462 0.00 0.00 0.00 3.58
107 108 4.282957 ACATATCTCTACTCACCAGGCATG 59.717 45.833 0.00 0.00 0.00 4.06
108 109 4.487804 ACATATCTCTACTCACCAGGCAT 58.512 43.478 0.00 0.00 0.00 4.40
109 110 3.916035 ACATATCTCTACTCACCAGGCA 58.084 45.455 0.00 0.00 0.00 4.75
110 111 6.597832 AATACATATCTCTACTCACCAGGC 57.402 41.667 0.00 0.00 0.00 4.85
111 112 7.957002 ACAAATACATATCTCTACTCACCAGG 58.043 38.462 0.00 0.00 0.00 4.45
113 114 8.577296 GCTACAAATACATATCTCTACTCACCA 58.423 37.037 0.00 0.00 0.00 4.17
114 115 8.030106 GGCTACAAATACATATCTCTACTCACC 58.970 40.741 0.00 0.00 0.00 4.02
115 116 8.577296 TGGCTACAAATACATATCTCTACTCAC 58.423 37.037 0.00 0.00 0.00 3.51
116 117 8.706322 TGGCTACAAATACATATCTCTACTCA 57.294 34.615 0.00 0.00 0.00 3.41
119 120 9.522804 GCTATGGCTACAAATACATATCTCTAC 57.477 37.037 0.00 0.00 35.22 2.59
120 121 8.696374 GGCTATGGCTACAAATACATATCTCTA 58.304 37.037 0.00 0.00 38.73 2.43
121 122 7.365117 GGGCTATGGCTACAAATACATATCTCT 60.365 40.741 0.00 0.00 38.73 3.10
122 123 6.763610 GGGCTATGGCTACAAATACATATCTC 59.236 42.308 0.00 0.00 38.73 2.75
123 124 6.445139 AGGGCTATGGCTACAAATACATATCT 59.555 38.462 0.00 0.00 38.73 1.98
124 125 6.653989 AGGGCTATGGCTACAAATACATATC 58.346 40.000 0.00 0.00 38.73 1.63
125 126 6.642733 AGGGCTATGGCTACAAATACATAT 57.357 37.500 0.00 0.00 38.73 1.78
126 127 6.448369 AAGGGCTATGGCTACAAATACATA 57.552 37.500 0.00 0.00 38.73 2.29
127 128 5.324832 AAGGGCTATGGCTACAAATACAT 57.675 39.130 0.00 0.00 38.73 2.29
128 129 4.788925 AAGGGCTATGGCTACAAATACA 57.211 40.909 0.00 0.00 38.73 2.29
129 130 5.246307 CCTAAGGGCTATGGCTACAAATAC 58.754 45.833 0.00 0.00 38.73 1.89
130 131 4.288626 CCCTAAGGGCTATGGCTACAAATA 59.711 45.833 0.00 0.00 35.35 1.40
131 132 3.074538 CCCTAAGGGCTATGGCTACAAAT 59.925 47.826 0.00 0.00 35.35 2.32
132 133 2.441750 CCCTAAGGGCTATGGCTACAAA 59.558 50.000 0.00 0.00 35.35 2.83
133 134 2.054799 CCCTAAGGGCTATGGCTACAA 58.945 52.381 0.00 0.00 35.35 2.41
134 135 1.729586 CCCTAAGGGCTATGGCTACA 58.270 55.000 0.00 0.00 35.35 2.74
146 147 1.039233 CCATGCTTGGTGCCCTAAGG 61.039 60.000 10.48 0.00 42.00 2.69
147 148 0.034186 TCCATGCTTGGTGCCCTAAG 60.034 55.000 17.54 0.00 44.06 2.18
148 149 0.034186 CTCCATGCTTGGTGCCCTAA 60.034 55.000 17.54 0.00 44.06 2.69
149 150 1.609239 CTCCATGCTTGGTGCCCTA 59.391 57.895 17.54 0.00 44.06 3.53
150 151 2.357836 CTCCATGCTTGGTGCCCT 59.642 61.111 17.54 0.00 44.06 5.19
151 152 2.757099 CCTCCATGCTTGGTGCCC 60.757 66.667 17.54 0.00 44.06 5.36
152 153 2.757099 CCCTCCATGCTTGGTGCC 60.757 66.667 17.54 0.00 44.06 5.01
153 154 2.757099 CCCCTCCATGCTTGGTGC 60.757 66.667 17.54 0.00 44.06 5.01
154 155 1.379044 GTCCCCTCCATGCTTGGTG 60.379 63.158 17.54 14.90 44.06 4.17
155 156 1.142688 AAGTCCCCTCCATGCTTGGT 61.143 55.000 17.54 0.00 44.06 3.67
156 157 0.682209 CAAGTCCCCTCCATGCTTGG 60.682 60.000 12.41 12.41 45.15 3.61
157 158 0.038744 ACAAGTCCCCTCCATGCTTG 59.961 55.000 5.70 5.70 41.40 4.01
158 159 0.038744 CACAAGTCCCCTCCATGCTT 59.961 55.000 0.00 0.00 0.00 3.91
159 160 1.136329 ACACAAGTCCCCTCCATGCT 61.136 55.000 0.00 0.00 0.00 3.79
160 161 0.618458 TACACAAGTCCCCTCCATGC 59.382 55.000 0.00 0.00 0.00 4.06
161 162 2.039746 TGTTACACAAGTCCCCTCCATG 59.960 50.000 0.00 0.00 0.00 3.66
162 163 2.344592 TGTTACACAAGTCCCCTCCAT 58.655 47.619 0.00 0.00 0.00 3.41
163 164 1.809133 TGTTACACAAGTCCCCTCCA 58.191 50.000 0.00 0.00 0.00 3.86
164 165 4.563140 TTATGTTACACAAGTCCCCTCC 57.437 45.455 0.00 0.00 0.00 4.30
165 166 6.053650 GGTATTATGTTACACAAGTCCCCTC 58.946 44.000 0.00 0.00 0.00 4.30
166 167 5.489637 TGGTATTATGTTACACAAGTCCCCT 59.510 40.000 0.00 0.00 0.00 4.79
167 168 5.747342 TGGTATTATGTTACACAAGTCCCC 58.253 41.667 0.00 0.00 0.00 4.81
168 169 6.646267 TCTGGTATTATGTTACACAAGTCCC 58.354 40.000 0.00 0.00 0.00 4.46
169 170 8.732746 ATTCTGGTATTATGTTACACAAGTCC 57.267 34.615 0.00 0.00 0.00 3.85
180 181 9.631257 TCATGACATGAAATTCTGGTATTATGT 57.369 29.630 15.83 0.00 36.11 2.29
181 182 9.888878 GTCATGACATGAAATTCTGGTATTATG 57.111 33.333 21.07 0.00 41.69 1.90
182 183 9.631257 TGTCATGACATGAAATTCTGGTATTAT 57.369 29.630 24.56 0.00 41.69 1.28
183 184 8.892723 GTGTCATGACATGAAATTCTGGTATTA 58.107 33.333 30.10 0.00 43.97 0.98
184 185 7.394077 TGTGTCATGACATGAAATTCTGGTATT 59.606 33.333 30.10 0.00 43.97 1.89
185 186 6.885918 TGTGTCATGACATGAAATTCTGGTAT 59.114 34.615 30.10 0.00 43.97 2.73
186 187 6.237154 TGTGTCATGACATGAAATTCTGGTA 58.763 36.000 30.10 0.04 43.97 3.25
187 188 5.072055 TGTGTCATGACATGAAATTCTGGT 58.928 37.500 30.10 0.00 43.97 4.00
188 189 5.632244 TGTGTCATGACATGAAATTCTGG 57.368 39.130 30.10 0.00 43.97 3.86
200 201 4.754372 ATGTGTTGTCATGTGTCATGAC 57.246 40.909 26.15 26.15 46.28 3.06
201 202 5.771153 AAATGTGTTGTCATGTGTCATGA 57.229 34.783 8.14 8.14 0.00 3.07
202 203 6.210796 AGAAAATGTGTTGTCATGTGTCATG 58.789 36.000 3.65 3.65 0.00 3.07
203 204 6.263842 AGAGAAAATGTGTTGTCATGTGTCAT 59.736 34.615 0.00 0.00 0.00 3.06
204 205 5.589855 AGAGAAAATGTGTTGTCATGTGTCA 59.410 36.000 0.00 0.00 0.00 3.58
205 206 6.064846 AGAGAAAATGTGTTGTCATGTGTC 57.935 37.500 0.00 0.00 0.00 3.67
206 207 6.293626 GCTAGAGAAAATGTGTTGTCATGTGT 60.294 38.462 0.00 0.00 0.00 3.72
207 208 6.072838 AGCTAGAGAAAATGTGTTGTCATGTG 60.073 38.462 0.00 0.00 0.00 3.21
208 209 6.000219 AGCTAGAGAAAATGTGTTGTCATGT 59.000 36.000 0.00 0.00 0.00 3.21
209 210 6.492007 AGCTAGAGAAAATGTGTTGTCATG 57.508 37.500 0.00 0.00 0.00 3.07
210 211 8.043113 TCATAGCTAGAGAAAATGTGTTGTCAT 58.957 33.333 0.00 0.00 0.00 3.06
211 212 7.386059 TCATAGCTAGAGAAAATGTGTTGTCA 58.614 34.615 0.00 0.00 0.00 3.58
212 213 7.834068 TCATAGCTAGAGAAAATGTGTTGTC 57.166 36.000 0.00 0.00 0.00 3.18
213 214 8.263640 AGATCATAGCTAGAGAAAATGTGTTGT 58.736 33.333 0.00 0.00 0.00 3.32
214 215 8.659925 AGATCATAGCTAGAGAAAATGTGTTG 57.340 34.615 0.00 0.00 0.00 3.33
215 216 8.481314 TGAGATCATAGCTAGAGAAAATGTGTT 58.519 33.333 0.00 0.00 0.00 3.32
216 217 8.016301 TGAGATCATAGCTAGAGAAAATGTGT 57.984 34.615 0.00 0.00 0.00 3.72
217 218 8.763356 GTTGAGATCATAGCTAGAGAAAATGTG 58.237 37.037 0.00 0.00 0.00 3.21
218 219 8.481314 TGTTGAGATCATAGCTAGAGAAAATGT 58.519 33.333 0.00 0.00 0.00 2.71
219 220 8.883954 TGTTGAGATCATAGCTAGAGAAAATG 57.116 34.615 0.00 0.00 0.00 2.32
220 221 9.323985 GTTGTTGAGATCATAGCTAGAGAAAAT 57.676 33.333 0.00 0.00 0.00 1.82
221 222 7.766278 GGTTGTTGAGATCATAGCTAGAGAAAA 59.234 37.037 0.00 0.00 0.00 2.29
222 223 7.268586 GGTTGTTGAGATCATAGCTAGAGAAA 58.731 38.462 0.00 0.00 0.00 2.52
223 224 6.183360 GGGTTGTTGAGATCATAGCTAGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
224 225 5.303078 GGGTTGTTGAGATCATAGCTAGAGA 59.697 44.000 0.00 0.00 0.00 3.10
225 226 5.304101 AGGGTTGTTGAGATCATAGCTAGAG 59.696 44.000 0.00 0.00 0.00 2.43
226 227 5.211973 AGGGTTGTTGAGATCATAGCTAGA 58.788 41.667 0.00 0.00 0.00 2.43
227 228 5.543507 AGGGTTGTTGAGATCATAGCTAG 57.456 43.478 0.00 0.00 0.00 3.42
228 229 6.014242 CCATAGGGTTGTTGAGATCATAGCTA 60.014 42.308 0.00 0.00 0.00 3.32
229 230 5.221803 CCATAGGGTTGTTGAGATCATAGCT 60.222 44.000 0.00 0.00 0.00 3.32
230 231 4.999950 CCATAGGGTTGTTGAGATCATAGC 59.000 45.833 0.00 0.00 0.00 2.97
231 232 4.999950 GCCATAGGGTTGTTGAGATCATAG 59.000 45.833 0.00 0.00 36.17 2.23
232 233 4.660303 AGCCATAGGGTTGTTGAGATCATA 59.340 41.667 0.00 0.00 36.17 2.15
233 234 3.461085 AGCCATAGGGTTGTTGAGATCAT 59.539 43.478 0.00 0.00 36.17 2.45
234 235 2.846206 AGCCATAGGGTTGTTGAGATCA 59.154 45.455 0.00 0.00 36.17 2.92
235 236 3.118261 TGAGCCATAGGGTTGTTGAGATC 60.118 47.826 0.00 0.00 36.17 2.75
236 237 2.846206 TGAGCCATAGGGTTGTTGAGAT 59.154 45.455 0.00 0.00 36.17 2.75
237 238 2.237143 CTGAGCCATAGGGTTGTTGAGA 59.763 50.000 0.00 0.00 36.17 3.27
238 239 2.026822 ACTGAGCCATAGGGTTGTTGAG 60.027 50.000 0.00 0.00 36.17 3.02
239 240 1.985159 ACTGAGCCATAGGGTTGTTGA 59.015 47.619 0.00 0.00 36.17 3.18
240 241 2.496899 ACTGAGCCATAGGGTTGTTG 57.503 50.000 0.00 0.00 36.17 3.33
241 242 2.238898 GGTACTGAGCCATAGGGTTGTT 59.761 50.000 0.00 0.00 36.17 2.83
242 243 1.838077 GGTACTGAGCCATAGGGTTGT 59.162 52.381 0.00 0.00 36.17 3.32
243 244 1.837439 TGGTACTGAGCCATAGGGTTG 59.163 52.381 0.00 0.00 36.17 3.77
244 245 2.119495 CTGGTACTGAGCCATAGGGTT 58.881 52.381 0.00 0.00 35.19 4.11
245 246 1.291033 TCTGGTACTGAGCCATAGGGT 59.709 52.381 0.00 0.00 35.19 4.34
246 247 1.689273 GTCTGGTACTGAGCCATAGGG 59.311 57.143 0.00 0.00 36.86 3.53
247 248 2.672098 AGTCTGGTACTGAGCCATAGG 58.328 52.381 0.00 0.00 36.93 2.57
248 249 4.744795 AAAGTCTGGTACTGAGCCATAG 57.255 45.455 0.00 0.00 38.88 2.23
249 250 6.156256 ACAATAAAGTCTGGTACTGAGCCATA 59.844 38.462 0.00 0.00 38.88 2.74
250 251 5.045578 ACAATAAAGTCTGGTACTGAGCCAT 60.046 40.000 0.00 0.00 38.88 4.40
251 252 4.286032 ACAATAAAGTCTGGTACTGAGCCA 59.714 41.667 0.00 0.00 38.88 4.75
252 253 4.833390 ACAATAAAGTCTGGTACTGAGCC 58.167 43.478 0.00 0.00 38.88 4.70
253 254 7.265673 TCATACAATAAAGTCTGGTACTGAGC 58.734 38.462 0.00 0.00 38.88 4.26
254 255 9.254133 CATCATACAATAAAGTCTGGTACTGAG 57.746 37.037 0.00 0.00 38.88 3.35
255 256 7.710907 GCATCATACAATAAAGTCTGGTACTGA 59.289 37.037 0.00 0.00 38.88 3.41
256 257 7.712639 AGCATCATACAATAAAGTCTGGTACTG 59.287 37.037 0.00 0.00 38.88 2.74
257 258 7.796054 AGCATCATACAATAAAGTCTGGTACT 58.204 34.615 0.00 0.00 41.49 2.73
258 259 8.438676 AAGCATCATACAATAAAGTCTGGTAC 57.561 34.615 0.00 0.00 0.00 3.34
259 260 7.715249 GGAAGCATCATACAATAAAGTCTGGTA 59.285 37.037 0.00 0.00 0.00 3.25
260 261 6.543831 GGAAGCATCATACAATAAAGTCTGGT 59.456 38.462 0.00 0.00 0.00 4.00
261 262 6.293081 CGGAAGCATCATACAATAAAGTCTGG 60.293 42.308 0.00 0.00 0.00 3.86
262 263 6.653183 CGGAAGCATCATACAATAAAGTCTG 58.347 40.000 0.00 0.00 0.00 3.51
263 264 6.851222 CGGAAGCATCATACAATAAAGTCT 57.149 37.500 0.00 0.00 0.00 3.24
281 282 1.929836 GCTGTCAAGACATAGCGGAAG 59.070 52.381 3.01 0.00 41.01 3.46
282 283 1.275010 TGCTGTCAAGACATAGCGGAA 59.725 47.619 3.01 0.00 41.01 4.30
283 284 0.894835 TGCTGTCAAGACATAGCGGA 59.105 50.000 3.01 0.00 41.01 5.54
292 293 5.335897 GCAAGGAAATGTATTGCTGTCAAGA 60.336 40.000 2.07 0.00 44.57 3.02
314 315 3.181470 TGTTACAAGAGTGCTAGTGTGCA 60.181 43.478 0.00 0.00 41.05 4.57
378 696 3.610669 CGCTGGGGGAGAGGATCG 61.611 72.222 0.00 0.00 42.67 3.69
383 1062 1.414061 ATTCATCCGCTGGGGGAGAG 61.414 60.000 11.17 7.37 40.02 3.20
388 1067 1.185315 AAAACATTCATCCGCTGGGG 58.815 50.000 4.03 4.03 37.02 4.96
432 1116 4.611355 CGTCGTCTTTCTCATGCACAAATT 60.611 41.667 0.00 0.00 0.00 1.82
481 1178 3.355378 CAGCTTGGGGATGTCATGTTTA 58.645 45.455 0.00 0.00 0.00 2.01
496 1193 0.961857 TGGCAGCACATACCAGCTTG 60.962 55.000 0.00 0.00 39.50 4.01
507 1370 2.005451 CTACTCTTGACATGGCAGCAC 58.995 52.381 0.00 0.00 0.00 4.40
625 1490 5.825151 AGTTTTCTCCTTCCTCTTTGAGTTG 59.175 40.000 0.00 0.00 0.00 3.16
627 1492 5.616270 GAGTTTTCTCCTTCCTCTTTGAGT 58.384 41.667 0.00 0.00 40.79 3.41
709 1579 8.679725 AGAGGATGTAGGTAAGAAGATATACCA 58.320 37.037 4.91 0.00 43.32 3.25
710 1580 9.536510 AAGAGGATGTAGGTAAGAAGATATACC 57.463 37.037 0.00 0.00 41.58 2.73
809 1721 8.727100 AGGAACTGACTATATTATCCATGTGA 57.273 34.615 0.00 0.00 37.18 3.58
812 1724 8.976353 AGCTAGGAACTGACTATATTATCCATG 58.024 37.037 0.00 0.00 41.52 3.66
834 1767 0.255890 GTTGGCATGGAGGGAAGCTA 59.744 55.000 0.00 0.00 0.00 3.32
923 1862 2.144078 TCTCGTTGTGGGGAGGCAA 61.144 57.895 0.00 0.00 0.00 4.52
924 1863 2.525629 TCTCGTTGTGGGGAGGCA 60.526 61.111 0.00 0.00 0.00 4.75
939 1881 5.834204 AGCTACTTTAATGGAGATACGGTCT 59.166 40.000 4.78 0.00 40.81 3.85
964 1922 4.390297 ACTCGTAAAAATGCAAGCTCTCTC 59.610 41.667 0.00 0.00 0.00 3.20
965 1923 4.319177 ACTCGTAAAAATGCAAGCTCTCT 58.681 39.130 0.00 0.00 0.00 3.10
982 1940 1.306642 ATCTCGCAACCTCGACTCGT 61.307 55.000 0.00 0.00 34.46 4.18
1141 2118 4.070552 GAGGAGCCGCACGAAGGT 62.071 66.667 0.00 0.00 0.00 3.50
1206 2183 2.839486 TATGGCGGATGATGAACTCC 57.161 50.000 0.00 0.00 0.00 3.85
1230 2207 6.715347 ATATTTTCCCAATCAACAGTAGGC 57.285 37.500 0.00 0.00 0.00 3.93
1245 2243 7.145932 ACTGCACTGTTTCAGTATATTTTCC 57.854 36.000 9.84 0.00 43.43 3.13
1271 2277 7.311364 TCTTTTTATTACATCCGTTACAGGC 57.689 36.000 0.00 0.00 0.00 4.85
1289 2295 5.011023 CCCTTACTTCCTGCACATTCTTTTT 59.989 40.000 0.00 0.00 0.00 1.94
1294 2300 3.055094 TCTCCCTTACTTCCTGCACATTC 60.055 47.826 0.00 0.00 0.00 2.67
1367 2373 2.958355 CTCTCCTCACCTTCCTCATCTC 59.042 54.545 0.00 0.00 0.00 2.75
1462 2468 0.772124 TCCAGCCAGAAGGGAGGTTT 60.772 55.000 0.00 0.00 40.01 3.27
1463 2469 1.151810 TCCAGCCAGAAGGGAGGTT 60.152 57.895 0.00 0.00 40.01 3.50
1464 2470 1.920835 GTCCAGCCAGAAGGGAGGT 60.921 63.158 0.00 0.00 40.01 3.85
1465 2471 1.492133 TTGTCCAGCCAGAAGGGAGG 61.492 60.000 0.00 0.00 40.01 4.30
1466 2472 0.622665 ATTGTCCAGCCAGAAGGGAG 59.377 55.000 0.00 0.00 40.01 4.30
1477 2483 3.567164 GCCTCCATATTGTCATTGTCCAG 59.433 47.826 0.00 0.00 0.00 3.86
1478 2484 3.202818 AGCCTCCATATTGTCATTGTCCA 59.797 43.478 0.00 0.00 0.00 4.02
1479 2485 3.817647 GAGCCTCCATATTGTCATTGTCC 59.182 47.826 0.00 0.00 0.00 4.02
1480 2486 4.712476 AGAGCCTCCATATTGTCATTGTC 58.288 43.478 0.00 0.00 0.00 3.18
1481 2487 4.785346 AGAGCCTCCATATTGTCATTGT 57.215 40.909 0.00 0.00 0.00 2.71
1601 2665 5.567534 GTGTACTCTGTTTTGTGTTTGTGTG 59.432 40.000 0.00 0.00 0.00 3.82
1611 2675 3.555956 AGCTTGTCGTGTACTCTGTTTTG 59.444 43.478 0.00 0.00 0.00 2.44
1643 2707 6.738649 GCGTACAAGCTTTTTCTATGAGAAAG 59.261 38.462 0.00 6.31 44.14 2.62
1659 2723 1.956620 GCAGGTCGAAGCGTACAAGC 61.957 60.000 0.00 0.00 37.41 4.01
1660 2724 0.666274 TGCAGGTCGAAGCGTACAAG 60.666 55.000 0.00 0.00 0.00 3.16
1682 2762 3.398318 TGGGCTGAATGGAGACTAGTA 57.602 47.619 0.00 0.00 0.00 1.82
1713 2876 3.391049 GTGTGGAGAAAAGCTACGACTT 58.609 45.455 0.00 0.00 0.00 3.01
1778 2941 9.653067 CGTATATACTGTGTTTTCAACAAACAA 57.347 29.630 11.05 0.00 44.16 2.83
1779 2942 7.799447 GCGTATATACTGTGTTTTCAACAAACA 59.201 33.333 11.05 0.00 44.16 2.83
1780 2943 7.799447 TGCGTATATACTGTGTTTTCAACAAAC 59.201 33.333 11.05 0.00 44.16 2.93
1781 2944 7.862648 TGCGTATATACTGTGTTTTCAACAAA 58.137 30.769 11.05 0.00 44.16 2.83
1782 2945 7.422878 TGCGTATATACTGTGTTTTCAACAA 57.577 32.000 11.05 0.00 44.16 2.83
1783 2946 7.385478 TCTTGCGTATATACTGTGTTTTCAACA 59.615 33.333 11.05 0.00 39.52 3.33
1784 2947 7.735500 TCTTGCGTATATACTGTGTTTTCAAC 58.264 34.615 11.05 0.00 0.00 3.18
1785 2948 7.892778 TCTTGCGTATATACTGTGTTTTCAA 57.107 32.000 11.05 3.41 0.00 2.69
1786 2949 7.762159 TGATCTTGCGTATATACTGTGTTTTCA 59.238 33.333 11.05 3.90 0.00 2.69
1787 2950 8.126871 TGATCTTGCGTATATACTGTGTTTTC 57.873 34.615 11.05 1.67 0.00 2.29
1788 2951 8.662781 ATGATCTTGCGTATATACTGTGTTTT 57.337 30.769 11.05 0.00 0.00 2.43
1789 2952 8.551205 CAATGATCTTGCGTATATACTGTGTTT 58.449 33.333 11.05 0.00 0.00 2.83
1790 2953 7.926018 TCAATGATCTTGCGTATATACTGTGTT 59.074 33.333 11.05 0.00 0.00 3.32
1791 2954 7.433680 TCAATGATCTTGCGTATATACTGTGT 58.566 34.615 11.05 0.00 0.00 3.72
1792 2955 7.873739 TCAATGATCTTGCGTATATACTGTG 57.126 36.000 11.05 0.00 0.00 3.66
1793 2956 7.926018 TGTTCAATGATCTTGCGTATATACTGT 59.074 33.333 11.05 0.00 0.00 3.55
1794 2957 8.298030 TGTTCAATGATCTTGCGTATATACTG 57.702 34.615 11.05 5.95 0.00 2.74
1795 2958 9.144747 GATGTTCAATGATCTTGCGTATATACT 57.855 33.333 11.05 0.00 0.00 2.12
1796 2959 9.144747 AGATGTTCAATGATCTTGCGTATATAC 57.855 33.333 2.53 2.53 0.00 1.47
1798 2961 9.363763 CTAGATGTTCAATGATCTTGCGTATAT 57.636 33.333 0.00 0.00 31.29 0.86
1799 2962 8.360390 ACTAGATGTTCAATGATCTTGCGTATA 58.640 33.333 0.00 0.00 31.29 1.47
1800 2963 7.170489 CACTAGATGTTCAATGATCTTGCGTAT 59.830 37.037 0.00 0.00 31.29 3.06
1801 2964 6.476706 CACTAGATGTTCAATGATCTTGCGTA 59.523 38.462 0.00 0.00 31.29 4.42
1802 2965 5.292834 CACTAGATGTTCAATGATCTTGCGT 59.707 40.000 0.00 0.00 31.29 5.24
1803 2966 5.735324 CACTAGATGTTCAATGATCTTGCG 58.265 41.667 0.00 0.00 31.29 4.85
1804 2967 5.296283 AGCACTAGATGTTCAATGATCTTGC 59.704 40.000 0.00 0.00 34.63 4.01
2018 3205 1.668294 CAGCACTTCCTCGTCCACT 59.332 57.895 0.00 0.00 0.00 4.00
2048 3235 1.900498 GGTGCCATAGGAGCCATGC 60.900 63.158 0.00 0.00 0.00 4.06
2065 3252 1.753073 CCTTAAAATGCCCTGCTCTGG 59.247 52.381 0.00 0.00 0.00 3.86
2271 3469 6.990349 CCATCGAAACCTGTACCTACAATTAT 59.010 38.462 0.00 0.00 35.50 1.28
2284 3902 3.195661 GGTAAGTAGCCATCGAAACCTG 58.804 50.000 0.00 0.00 0.00 4.00
2387 4009 7.711846 TGCATGCTACTGTTTTCTTTAAAAGA 58.288 30.769 20.33 0.00 35.29 2.52
2388 4010 7.928908 TGCATGCTACTGTTTTCTTTAAAAG 57.071 32.000 20.33 0.00 35.29 2.27
2392 4015 7.754924 GCTTTATGCATGCTACTGTTTTCTTTA 59.245 33.333 20.33 0.00 42.31 1.85
2395 4018 5.644644 GCTTTATGCATGCTACTGTTTTCT 58.355 37.500 20.33 0.00 42.31 2.52
2411 4034 6.264832 TGTGTCTTGTTGTCTTTGCTTTATG 58.735 36.000 0.00 0.00 0.00 1.90
2464 4087 5.009510 TGAAGGCAAAAGATGATCGTTTTCA 59.990 36.000 3.61 3.32 0.00 2.69
2523 4146 2.766345 TCCGCTTACCACCGTTTTAT 57.234 45.000 0.00 0.00 0.00 1.40
2526 4149 0.604511 CCTTCCGCTTACCACCGTTT 60.605 55.000 0.00 0.00 0.00 3.60
2541 4164 2.575461 GCTTGCATGTGGCCCTTC 59.425 61.111 0.00 0.00 43.89 3.46
2547 4170 3.818787 GAGGGCGCTTGCATGTGG 61.819 66.667 7.64 2.44 41.71 4.17
2600 4223 3.069729 GTCCTGATATGGTTTCTAGCGGT 59.930 47.826 0.00 0.00 0.00 5.68
2603 4226 5.918608 TCAAGTCCTGATATGGTTTCTAGC 58.081 41.667 0.00 0.00 0.00 3.42
2612 4235 4.115516 CACGGTCTTCAAGTCCTGATATG 58.884 47.826 0.00 0.00 32.78 1.78
2657 4280 5.353123 TCACACACAACTCAAGTTTTCTACC 59.647 40.000 0.00 0.00 35.83 3.18
2666 4289 3.100817 CGCTTTTCACACACAACTCAAG 58.899 45.455 0.00 0.00 0.00 3.02
2696 4319 4.335315 GCGAAGTATCATGGTTTCCAATGA 59.665 41.667 0.00 0.00 36.95 2.57
2701 4324 1.597663 CGGCGAAGTATCATGGTTTCC 59.402 52.381 0.00 0.00 0.00 3.13
2708 4331 2.138320 CATTCTGCGGCGAAGTATCAT 58.862 47.619 15.80 0.36 0.00 2.45
2777 4423 6.715344 TTCGTAAAAATGTGAGAGCGTTAT 57.285 33.333 0.00 0.00 0.00 1.89
2781 4427 4.148891 GGTTTCGTAAAAATGTGAGAGCG 58.851 43.478 0.00 0.00 0.00 5.03
2842 4488 4.449743 ACGTGCAAACTAGCTTCGAAATTA 59.550 37.500 0.00 0.00 36.78 1.40
2855 7219 4.911514 AGTTCCAAATAACGTGCAAACT 57.088 36.364 0.00 0.00 34.46 2.66
2863 7227 5.526010 ACGCTCTTTAGTTCCAAATAACG 57.474 39.130 0.00 0.00 34.46 3.18
2877 7241 7.466725 GCAATTAAAAAGGGAAAAACGCTCTTT 60.467 33.333 0.00 0.00 40.92 2.52
2889 7253 7.619302 ACTGATTATCCAGCAATTAAAAAGGGA 59.381 33.333 0.00 0.00 37.68 4.20
2908 7272 7.232534 ACCTTTTGTCCAGCAATTAACTGATTA 59.767 33.333 8.80 0.00 37.32 1.75
2920 7284 0.257328 TGGTCACCTTTTGTCCAGCA 59.743 50.000 0.00 0.00 38.37 4.41
2921 7285 1.398692 TTGGTCACCTTTTGTCCAGC 58.601 50.000 0.00 0.00 43.32 4.85
2922 7286 4.670896 AATTTGGTCACCTTTTGTCCAG 57.329 40.909 0.00 0.00 43.32 3.86
2924 7288 5.017294 TGAAATTTGGTCACCTTTTGTCC 57.983 39.130 0.00 0.00 34.20 4.02
2945 7324 2.093869 CACCTTTGGAAATCCCATGCTG 60.094 50.000 0.00 0.00 46.10 4.41
3006 7385 7.174253 TGACCATATTGTCTTGGTTGTCTTTAC 59.826 37.037 8.29 0.00 46.14 2.01
3011 7390 5.003804 AGTGACCATATTGTCTTGGTTGTC 58.996 41.667 8.29 0.00 46.14 3.18
3018 7397 8.859090 TCAATTTTGAAGTGACCATATTGTCTT 58.141 29.630 8.29 0.00 33.67 3.01
3020 7399 9.474920 TTTCAATTTTGAAGTGACCATATTGTC 57.525 29.630 5.92 0.00 46.68 3.18
3027 7406 9.311916 CTATGTTTTTCAATTTTGAAGTGACCA 57.688 29.630 5.92 2.14 46.68 4.02
3075 7454 4.089239 TAGCATTGACGGGCGGCA 62.089 61.111 12.47 0.00 34.54 5.69
3077 7456 2.895372 GGTAGCATTGACGGGCGG 60.895 66.667 0.00 0.00 34.54 6.13
3097 7476 0.617249 TTTGGGATGGGGAATGGTGC 60.617 55.000 0.00 0.00 0.00 5.01
3102 7481 4.697798 TCTGAAATTTTGGGATGGGGAAT 58.302 39.130 0.00 0.00 0.00 3.01
3108 7487 5.105595 GGGAGTTCTCTGAAATTTTGGGATG 60.106 44.000 0.00 0.00 0.00 3.51
3113 7492 5.334414 CGAGTGGGAGTTCTCTGAAATTTTG 60.334 44.000 0.00 0.00 0.00 2.44
3131 7510 3.065371 GCCAAATCAAATAGGTCGAGTGG 59.935 47.826 0.00 0.00 0.00 4.00
3159 7538 2.698797 TCTATTCCTAGTCCGGGCTTTG 59.301 50.000 17.04 7.97 0.00 2.77
3168 7547 2.623889 TCGCTGCCTTCTATTCCTAGTC 59.376 50.000 0.00 0.00 0.00 2.59
3178 7557 1.133450 TCCTATAGGTCGCTGCCTTCT 60.133 52.381 18.51 0.00 39.94 2.85
3185 7564 2.309162 TCTATGGCTCCTATAGGTCGCT 59.691 50.000 24.69 14.68 36.34 4.93
3214 7594 1.892819 CGACATGAGCTCACCTGGGT 61.893 60.000 20.97 12.22 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.