Multiple sequence alignment - TraesCS7D01G541000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G541000 | chr7D | 100.000 | 3082 | 0 | 0 | 1 | 3082 | 630683638 | 630686719 | 0.000000e+00 | 5692.0 |
1 | TraesCS7D01G541000 | chr7D | 94.759 | 1450 | 62 | 10 | 1 | 1443 | 631251523 | 631252965 | 0.000000e+00 | 2244.0 |
2 | TraesCS7D01G541000 | chr7D | 90.965 | 819 | 70 | 4 | 2267 | 3082 | 267431288 | 267432105 | 0.000000e+00 | 1099.0 |
3 | TraesCS7D01G541000 | chr7D | 90.223 | 583 | 34 | 10 | 1514 | 2074 | 631252974 | 631253555 | 0.000000e+00 | 739.0 |
4 | TraesCS7D01G541000 | chr7D | 87.136 | 583 | 67 | 5 | 1232 | 1813 | 630833763 | 630833188 | 0.000000e+00 | 654.0 |
5 | TraesCS7D01G541000 | chr7D | 87.136 | 583 | 67 | 5 | 1232 | 1813 | 631361197 | 631361772 | 0.000000e+00 | 654.0 |
6 | TraesCS7D01G541000 | chr7D | 83.798 | 574 | 77 | 10 | 1230 | 1795 | 630678226 | 630678791 | 5.850000e-147 | 531.0 |
7 | TraesCS7D01G541000 | chr7D | 89.157 | 166 | 14 | 3 | 337 | 500 | 454079409 | 454079246 | 1.450000e-48 | 204.0 |
8 | TraesCS7D01G541000 | chr7D | 93.651 | 63 | 4 | 0 | 2012 | 2074 | 631253394 | 631253456 | 9.100000e-16 | 95.3 |
9 | TraesCS7D01G541000 | chr3D | 92.176 | 818 | 57 | 4 | 2267 | 3082 | 537066744 | 537067556 | 0.000000e+00 | 1149.0 |
10 | TraesCS7D01G541000 | chr3D | 90.876 | 822 | 63 | 10 | 2267 | 3082 | 327248740 | 327249555 | 0.000000e+00 | 1092.0 |
11 | TraesCS7D01G541000 | chr3D | 90.709 | 818 | 72 | 4 | 2267 | 3082 | 314376733 | 314377548 | 0.000000e+00 | 1086.0 |
12 | TraesCS7D01G541000 | chr3D | 83.898 | 118 | 14 | 5 | 1946 | 2060 | 589707612 | 589707727 | 1.170000e-19 | 108.0 |
13 | TraesCS7D01G541000 | chr5D | 90.987 | 821 | 67 | 7 | 2267 | 3082 | 328287753 | 328288571 | 0.000000e+00 | 1099.0 |
14 | TraesCS7D01G541000 | chr5D | 84.559 | 136 | 20 | 1 | 1928 | 2062 | 340103320 | 340103455 | 1.930000e-27 | 134.0 |
15 | TraesCS7D01G541000 | chr5D | 75.839 | 149 | 22 | 11 | 1036 | 1177 | 443628291 | 443628150 | 2.570000e-06 | 63.9 |
16 | TraesCS7D01G541000 | chr1B | 90.965 | 819 | 66 | 8 | 2267 | 3081 | 403819755 | 403818941 | 0.000000e+00 | 1096.0 |
17 | TraesCS7D01G541000 | chr1A | 90.732 | 820 | 73 | 3 | 2266 | 3082 | 245248524 | 245249343 | 0.000000e+00 | 1090.0 |
18 | TraesCS7D01G541000 | chr1A | 86.207 | 87 | 11 | 1 | 2114 | 2199 | 408070566 | 408070652 | 3.270000e-15 | 93.5 |
19 | TraesCS7D01G541000 | chr2D | 90.610 | 820 | 71 | 6 | 2267 | 3082 | 255595104 | 255594287 | 0.000000e+00 | 1083.0 |
20 | TraesCS7D01G541000 | chr6D | 90.587 | 818 | 71 | 6 | 2267 | 3082 | 371181708 | 371180895 | 0.000000e+00 | 1079.0 |
21 | TraesCS7D01G541000 | chr6D | 86.905 | 84 | 8 | 3 | 933 | 1013 | 412724865 | 412724948 | 1.180000e-14 | 91.6 |
22 | TraesCS7D01G541000 | chr6D | 84.211 | 76 | 11 | 1 | 937 | 1012 | 412477910 | 412477984 | 4.260000e-09 | 73.1 |
23 | TraesCS7D01G541000 | chrUn | 83.130 | 575 | 79 | 12 | 1230 | 1795 | 88643203 | 88643768 | 2.740000e-140 | 508.0 |
24 | TraesCS7D01G541000 | chrUn | 83.130 | 575 | 79 | 12 | 1230 | 1795 | 283733294 | 283733859 | 2.740000e-140 | 508.0 |
25 | TraesCS7D01G541000 | chrUn | 85.401 | 137 | 11 | 7 | 1231 | 1358 | 364243352 | 364243216 | 1.930000e-27 | 134.0 |
26 | TraesCS7D01G541000 | chr7A | 82.948 | 563 | 81 | 12 | 1230 | 1781 | 727038229 | 727037671 | 7.680000e-136 | 494.0 |
27 | TraesCS7D01G541000 | chr6B | 90.909 | 165 | 13 | 1 | 337 | 499 | 583446147 | 583445983 | 1.440000e-53 | 220.0 |
28 | TraesCS7D01G541000 | chr6B | 88.757 | 169 | 15 | 3 | 335 | 500 | 83138380 | 83138547 | 1.450000e-48 | 204.0 |
29 | TraesCS7D01G541000 | chr6B | 88.690 | 168 | 14 | 4 | 335 | 499 | 36133500 | 36133665 | 1.870000e-47 | 200.0 |
30 | TraesCS7D01G541000 | chr6B | 89.024 | 164 | 14 | 3 | 338 | 499 | 226361518 | 226361679 | 1.870000e-47 | 200.0 |
31 | TraesCS7D01G541000 | chr5A | 89.697 | 165 | 13 | 3 | 337 | 499 | 320214406 | 320214244 | 1.120000e-49 | 207.0 |
32 | TraesCS7D01G541000 | chr3B | 89.091 | 165 | 16 | 1 | 337 | 499 | 752695446 | 752695282 | 1.450000e-48 | 204.0 |
33 | TraesCS7D01G541000 | chr4D | 89.024 | 164 | 14 | 3 | 338 | 499 | 479687421 | 479687260 | 1.870000e-47 | 200.0 |
34 | TraesCS7D01G541000 | chr4D | 85.833 | 120 | 13 | 3 | 1947 | 2062 | 52830301 | 52830182 | 1.160000e-24 | 124.0 |
35 | TraesCS7D01G541000 | chr5B | 82.353 | 170 | 27 | 3 | 1895 | 2062 | 554510213 | 554510381 | 8.910000e-31 | 145.0 |
36 | TraesCS7D01G541000 | chr5B | 85.000 | 60 | 8 | 1 | 2204 | 2263 | 437806483 | 437806541 | 3.320000e-05 | 60.2 |
37 | TraesCS7D01G541000 | chr7B | 79.263 | 217 | 31 | 12 | 1860 | 2073 | 179332586 | 179332791 | 4.140000e-29 | 139.0 |
38 | TraesCS7D01G541000 | chr7B | 84.559 | 136 | 20 | 1 | 1928 | 2062 | 750052364 | 750052499 | 1.930000e-27 | 134.0 |
39 | TraesCS7D01G541000 | chr2B | 87.611 | 113 | 13 | 1 | 1951 | 2062 | 38848172 | 38848060 | 2.490000e-26 | 130.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7D01G541000 | chr7D | 630683638 | 630686719 | 3081 | False | 5692.0 | 5692 | 100.000000 | 1 | 3082 | 1 | chr7D.!!$F3 | 3081 |
1 | TraesCS7D01G541000 | chr7D | 267431288 | 267432105 | 817 | False | 1099.0 | 1099 | 90.965000 | 2267 | 3082 | 1 | chr7D.!!$F1 | 815 |
2 | TraesCS7D01G541000 | chr7D | 631251523 | 631253555 | 2032 | False | 1026.1 | 2244 | 92.877667 | 1 | 2074 | 3 | chr7D.!!$F5 | 2073 |
3 | TraesCS7D01G541000 | chr7D | 630833188 | 630833763 | 575 | True | 654.0 | 654 | 87.136000 | 1232 | 1813 | 1 | chr7D.!!$R2 | 581 |
4 | TraesCS7D01G541000 | chr7D | 631361197 | 631361772 | 575 | False | 654.0 | 654 | 87.136000 | 1232 | 1813 | 1 | chr7D.!!$F4 | 581 |
5 | TraesCS7D01G541000 | chr7D | 630678226 | 630678791 | 565 | False | 531.0 | 531 | 83.798000 | 1230 | 1795 | 1 | chr7D.!!$F2 | 565 |
6 | TraesCS7D01G541000 | chr3D | 537066744 | 537067556 | 812 | False | 1149.0 | 1149 | 92.176000 | 2267 | 3082 | 1 | chr3D.!!$F3 | 815 |
7 | TraesCS7D01G541000 | chr3D | 327248740 | 327249555 | 815 | False | 1092.0 | 1092 | 90.876000 | 2267 | 3082 | 1 | chr3D.!!$F2 | 815 |
8 | TraesCS7D01G541000 | chr3D | 314376733 | 314377548 | 815 | False | 1086.0 | 1086 | 90.709000 | 2267 | 3082 | 1 | chr3D.!!$F1 | 815 |
9 | TraesCS7D01G541000 | chr5D | 328287753 | 328288571 | 818 | False | 1099.0 | 1099 | 90.987000 | 2267 | 3082 | 1 | chr5D.!!$F1 | 815 |
10 | TraesCS7D01G541000 | chr1B | 403818941 | 403819755 | 814 | True | 1096.0 | 1096 | 90.965000 | 2267 | 3081 | 1 | chr1B.!!$R1 | 814 |
11 | TraesCS7D01G541000 | chr1A | 245248524 | 245249343 | 819 | False | 1090.0 | 1090 | 90.732000 | 2266 | 3082 | 1 | chr1A.!!$F1 | 816 |
12 | TraesCS7D01G541000 | chr2D | 255594287 | 255595104 | 817 | True | 1083.0 | 1083 | 90.610000 | 2267 | 3082 | 1 | chr2D.!!$R1 | 815 |
13 | TraesCS7D01G541000 | chr6D | 371180895 | 371181708 | 813 | True | 1079.0 | 1079 | 90.587000 | 2267 | 3082 | 1 | chr6D.!!$R1 | 815 |
14 | TraesCS7D01G541000 | chrUn | 88643203 | 88643768 | 565 | False | 508.0 | 508 | 83.130000 | 1230 | 1795 | 1 | chrUn.!!$F1 | 565 |
15 | TraesCS7D01G541000 | chrUn | 283733294 | 283733859 | 565 | False | 508.0 | 508 | 83.130000 | 1230 | 1795 | 1 | chrUn.!!$F2 | 565 |
16 | TraesCS7D01G541000 | chr7A | 727037671 | 727038229 | 558 | True | 494.0 | 494 | 82.948000 | 1230 | 1781 | 1 | chr7A.!!$R1 | 551 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
29 | 30 | 2.925724 | TCGCAAAAAGAGGAAGGTTCA | 58.074 | 42.857 | 0.00 | 0.0 | 0.00 | 3.18 | F |
1662 | 1680 | 0.394899 | CTTCAGGAAGGGCATGGTCC | 60.395 | 60.000 | 1.01 | 0.0 | 34.87 | 4.46 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1907 | 1926 | 0.681733 | GAATGGGATAGCTCGCCAGA | 59.318 | 55.0 | 7.05 | 0.0 | 33.54 | 3.86 | R |
2772 | 2826 | 0.178953 | AGGGCAGCAAGGTTGATGTT | 60.179 | 50.0 | 9.53 | 0.0 | 45.71 | 2.71 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 2.925724 | TCGCAAAAAGAGGAAGGTTCA | 58.074 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
173 | 175 | 6.067263 | TCCCTTTATGAAGAAACAACAACG | 57.933 | 37.500 | 0.00 | 0.00 | 34.71 | 4.10 |
178 | 180 | 8.318167 | CCTTTATGAAGAAACAACAACGAAAAC | 58.682 | 33.333 | 0.00 | 0.00 | 34.71 | 2.43 |
441 | 445 | 6.939163 | AGTGTAGATTCACTCATTTTGCTTCT | 59.061 | 34.615 | 0.00 | 0.00 | 44.07 | 2.85 |
496 | 500 | 7.578203 | AGAGTTTTATTTAGGAATGGAGGGAG | 58.422 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
552 | 556 | 8.695456 | CCTAAAAAGGAATGTATTAGTGGCATT | 58.305 | 33.333 | 0.00 | 0.00 | 35.78 | 3.56 |
759 | 763 | 9.063615 | TGGTGTTAATCTTTAAGAAGAAAGGAC | 57.936 | 33.333 | 0.00 | 0.00 | 44.61 | 3.85 |
1245 | 1253 | 2.202987 | GCATCTGCTGGGAGTCCG | 60.203 | 66.667 | 2.26 | 0.00 | 38.21 | 4.79 |
1297 | 1305 | 2.502692 | AAGAAGGTAGTCGCCCACGC | 62.503 | 60.000 | 0.00 | 0.00 | 39.84 | 5.34 |
1298 | 1306 | 2.995574 | AAGGTAGTCGCCCACGCT | 60.996 | 61.111 | 0.00 | 0.00 | 39.84 | 5.07 |
1445 | 1462 | 1.346068 | GACAAGGTGCTCTTCCTCAGT | 59.654 | 52.381 | 0.00 | 0.00 | 33.76 | 3.41 |
1469 | 1486 | 4.819761 | GAGATGCTGCGCGACCCA | 62.820 | 66.667 | 12.10 | 2.24 | 0.00 | 4.51 |
1504 | 1522 | 4.329545 | GCTGGTGCGGTTCCTGGA | 62.330 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1518 | 1536 | 3.220999 | CTGGAGTGCCCGTTCACGA | 62.221 | 63.158 | 0.00 | 0.00 | 43.02 | 4.35 |
1662 | 1680 | 0.394899 | CTTCAGGAAGGGCATGGTCC | 60.395 | 60.000 | 1.01 | 0.00 | 34.87 | 4.46 |
1677 | 1695 | 4.717629 | TCCGCGACTGGAGCAACG | 62.718 | 66.667 | 8.23 | 0.00 | 33.05 | 4.10 |
1791 | 1809 | 1.219393 | GAAGAAGGTGCTCCTCCGG | 59.781 | 63.158 | 7.99 | 0.00 | 44.35 | 5.14 |
1807 | 1825 | 2.202892 | GGAGATCGGTTGACGGGC | 60.203 | 66.667 | 0.00 | 0.00 | 44.45 | 6.13 |
1827 | 1845 | 4.210328 | GGGCGAAAGTTTTTATTGTGTTGG | 59.790 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
1872 | 1890 | 0.883833 | TACTATAAGGGCGCGCTACC | 59.116 | 55.000 | 32.29 | 24.42 | 0.00 | 3.18 |
1893 | 1912 | 2.739913 | CGGTCGGCAACTGATTCTTTTA | 59.260 | 45.455 | 0.00 | 0.00 | 36.22 | 1.52 |
1901 | 1920 | 7.807907 | TCGGCAACTGATTCTTTTAAAAAGATC | 59.192 | 33.333 | 1.66 | 8.68 | 0.00 | 2.75 |
1907 | 1926 | 7.172703 | ACTGATTCTTTTAAAAAGATCCGTCGT | 59.827 | 33.333 | 15.31 | 8.39 | 0.00 | 4.34 |
1926 | 1945 | 0.681733 | TCTGGCGAGCTATCCCATTC | 59.318 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
1927 | 1946 | 0.683973 | CTGGCGAGCTATCCCATTCT | 59.316 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1938 | 1957 | 2.890808 | TCCCATTCTGTGATACGAGC | 57.109 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1939 | 1958 | 1.412710 | TCCCATTCTGTGATACGAGCC | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1940 | 1959 | 1.138859 | CCCATTCTGTGATACGAGCCA | 59.861 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
1942 | 1961 | 3.062763 | CCATTCTGTGATACGAGCCATC | 58.937 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1943 | 1962 | 3.493176 | CCATTCTGTGATACGAGCCATCA | 60.493 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
1944 | 1963 | 3.885724 | TTCTGTGATACGAGCCATCAA | 57.114 | 42.857 | 0.00 | 0.00 | 34.32 | 2.57 |
1945 | 1964 | 4.406648 | TTCTGTGATACGAGCCATCAAT | 57.593 | 40.909 | 0.00 | 0.00 | 34.32 | 2.57 |
1947 | 1966 | 4.769688 | TCTGTGATACGAGCCATCAATTT | 58.230 | 39.130 | 0.00 | 0.00 | 34.32 | 1.82 |
1950 | 1978 | 5.185454 | TGTGATACGAGCCATCAATTTCTT | 58.815 | 37.500 | 0.00 | 0.00 | 34.32 | 2.52 |
2074 | 2114 | 4.036262 | TGCAACAAGTCACCTGTTACAATC | 59.964 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
2075 | 2115 | 4.275936 | GCAACAAGTCACCTGTTACAATCT | 59.724 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
2076 | 2116 | 5.221048 | GCAACAAGTCACCTGTTACAATCTT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2077 | 2117 | 6.430451 | CAACAAGTCACCTGTTACAATCTTC | 58.570 | 40.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2078 | 2118 | 4.750098 | ACAAGTCACCTGTTACAATCTTCG | 59.250 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
2079 | 2119 | 3.326747 | AGTCACCTGTTACAATCTTCGC | 58.673 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
2080 | 2120 | 2.415512 | GTCACCTGTTACAATCTTCGCC | 59.584 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
2081 | 2121 | 2.037902 | TCACCTGTTACAATCTTCGCCA | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 5.69 |
2082 | 2122 | 2.811431 | CACCTGTTACAATCTTCGCCAA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
2083 | 2123 | 3.252215 | CACCTGTTACAATCTTCGCCAAA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
2084 | 2124 | 3.886505 | ACCTGTTACAATCTTCGCCAAAA | 59.113 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
2085 | 2125 | 4.339814 | ACCTGTTACAATCTTCGCCAAAAA | 59.660 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
2108 | 2148 | 5.830000 | AAGTCAACTGTTACAAAACCTCC | 57.170 | 39.130 | 0.00 | 0.00 | 34.49 | 4.30 |
2109 | 2149 | 5.112129 | AGTCAACTGTTACAAAACCTCCT | 57.888 | 39.130 | 0.00 | 0.00 | 34.49 | 3.69 |
2110 | 2150 | 5.123936 | AGTCAACTGTTACAAAACCTCCTC | 58.876 | 41.667 | 0.00 | 0.00 | 34.49 | 3.71 |
2111 | 2151 | 5.104485 | AGTCAACTGTTACAAAACCTCCTCT | 60.104 | 40.000 | 0.00 | 0.00 | 34.49 | 3.69 |
2112 | 2152 | 5.589050 | GTCAACTGTTACAAAACCTCCTCTT | 59.411 | 40.000 | 0.00 | 0.00 | 34.49 | 2.85 |
2113 | 2153 | 6.095021 | GTCAACTGTTACAAAACCTCCTCTTT | 59.905 | 38.462 | 0.00 | 0.00 | 34.49 | 2.52 |
2114 | 2154 | 6.317893 | TCAACTGTTACAAAACCTCCTCTTTC | 59.682 | 38.462 | 0.00 | 0.00 | 34.49 | 2.62 |
2115 | 2155 | 6.002653 | ACTGTTACAAAACCTCCTCTTTCT | 57.997 | 37.500 | 0.00 | 0.00 | 34.49 | 2.52 |
2116 | 2156 | 7.133133 | ACTGTTACAAAACCTCCTCTTTCTA | 57.867 | 36.000 | 0.00 | 0.00 | 34.49 | 2.10 |
2117 | 2157 | 7.571025 | ACTGTTACAAAACCTCCTCTTTCTAA | 58.429 | 34.615 | 0.00 | 0.00 | 34.49 | 2.10 |
2118 | 2158 | 8.218488 | ACTGTTACAAAACCTCCTCTTTCTAAT | 58.782 | 33.333 | 0.00 | 0.00 | 34.49 | 1.73 |
2119 | 2159 | 8.990163 | TGTTACAAAACCTCCTCTTTCTAATT | 57.010 | 30.769 | 0.00 | 0.00 | 34.49 | 1.40 |
2120 | 2160 | 9.416284 | TGTTACAAAACCTCCTCTTTCTAATTT | 57.584 | 29.630 | 0.00 | 0.00 | 34.49 | 1.82 |
2143 | 2183 | 7.899648 | TTTTTATAACAAGACCCTTGTGGAA | 57.100 | 32.000 | 12.42 | 5.50 | 38.00 | 3.53 |
2144 | 2184 | 7.899648 | TTTTATAACAAGACCCTTGTGGAAA | 57.100 | 32.000 | 12.42 | 10.14 | 38.00 | 3.13 |
2145 | 2185 | 7.899648 | TTTATAACAAGACCCTTGTGGAAAA | 57.100 | 32.000 | 12.42 | 10.01 | 38.00 | 2.29 |
2146 | 2186 | 7.899648 | TTATAACAAGACCCTTGTGGAAAAA | 57.100 | 32.000 | 12.42 | 2.50 | 38.00 | 1.94 |
2147 | 2187 | 6.994421 | ATAACAAGACCCTTGTGGAAAAAT | 57.006 | 33.333 | 12.42 | 0.00 | 38.00 | 1.82 |
2148 | 2188 | 5.692115 | AACAAGACCCTTGTGGAAAAATT | 57.308 | 34.783 | 12.42 | 0.00 | 38.00 | 1.82 |
2149 | 2189 | 5.022282 | ACAAGACCCTTGTGGAAAAATTG | 57.978 | 39.130 | 11.10 | 0.00 | 38.00 | 2.32 |
2150 | 2190 | 3.751479 | AGACCCTTGTGGAAAAATTGC | 57.249 | 42.857 | 0.00 | 0.00 | 38.00 | 3.56 |
2151 | 2191 | 3.037549 | AGACCCTTGTGGAAAAATTGCA | 58.962 | 40.909 | 0.00 | 0.00 | 38.00 | 4.08 |
2152 | 2192 | 3.454082 | AGACCCTTGTGGAAAAATTGCAA | 59.546 | 39.130 | 0.00 | 0.00 | 38.00 | 4.08 |
2153 | 2193 | 4.102996 | AGACCCTTGTGGAAAAATTGCAAT | 59.897 | 37.500 | 5.99 | 5.99 | 38.00 | 3.56 |
2154 | 2194 | 5.306678 | AGACCCTTGTGGAAAAATTGCAATA | 59.693 | 36.000 | 13.39 | 0.00 | 38.00 | 1.90 |
2155 | 2195 | 5.934781 | ACCCTTGTGGAAAAATTGCAATAA | 58.065 | 33.333 | 13.39 | 0.00 | 38.00 | 1.40 |
2156 | 2196 | 5.762711 | ACCCTTGTGGAAAAATTGCAATAAC | 59.237 | 36.000 | 13.39 | 5.51 | 38.00 | 1.89 |
2157 | 2197 | 5.762218 | CCCTTGTGGAAAAATTGCAATAACA | 59.238 | 36.000 | 13.39 | 7.92 | 35.39 | 2.41 |
2158 | 2198 | 6.430616 | CCCTTGTGGAAAAATTGCAATAACAT | 59.569 | 34.615 | 13.39 | 0.00 | 35.39 | 2.71 |
2159 | 2199 | 7.361116 | CCCTTGTGGAAAAATTGCAATAACATC | 60.361 | 37.037 | 13.39 | 8.85 | 35.39 | 3.06 |
2160 | 2200 | 7.388500 | CCTTGTGGAAAAATTGCAATAACATCT | 59.612 | 33.333 | 13.39 | 0.00 | 34.57 | 2.90 |
2161 | 2201 | 7.887996 | TGTGGAAAAATTGCAATAACATCTC | 57.112 | 32.000 | 13.39 | 4.14 | 30.97 | 2.75 |
2162 | 2202 | 6.873076 | TGTGGAAAAATTGCAATAACATCTCC | 59.127 | 34.615 | 13.39 | 12.80 | 30.97 | 3.71 |
2163 | 2203 | 6.034898 | GTGGAAAAATTGCAATAACATCTCCG | 59.965 | 38.462 | 13.39 | 0.00 | 30.97 | 4.63 |
2164 | 2204 | 5.519927 | GGAAAAATTGCAATAACATCTCCGG | 59.480 | 40.000 | 13.39 | 0.00 | 0.00 | 5.14 |
2165 | 2205 | 3.715628 | AATTGCAATAACATCTCCGGC | 57.284 | 42.857 | 13.39 | 0.00 | 0.00 | 6.13 |
2166 | 2206 | 1.388547 | TTGCAATAACATCTCCGGCC | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2167 | 2207 | 0.813610 | TGCAATAACATCTCCGGCCG | 60.814 | 55.000 | 21.04 | 21.04 | 0.00 | 6.13 |
2168 | 2208 | 1.941812 | CAATAACATCTCCGGCCGC | 59.058 | 57.895 | 22.85 | 0.00 | 0.00 | 6.53 |
2169 | 2209 | 0.813610 | CAATAACATCTCCGGCCGCA | 60.814 | 55.000 | 22.85 | 2.88 | 0.00 | 5.69 |
2170 | 2210 | 0.108585 | AATAACATCTCCGGCCGCAT | 59.891 | 50.000 | 22.85 | 8.27 | 0.00 | 4.73 |
2171 | 2211 | 0.320771 | ATAACATCTCCGGCCGCATC | 60.321 | 55.000 | 22.85 | 0.00 | 0.00 | 3.91 |
2172 | 2212 | 1.681486 | TAACATCTCCGGCCGCATCA | 61.681 | 55.000 | 22.85 | 2.69 | 0.00 | 3.07 |
2173 | 2213 | 2.969238 | CATCTCCGGCCGCATCAC | 60.969 | 66.667 | 22.85 | 0.00 | 0.00 | 3.06 |
2174 | 2214 | 3.469970 | ATCTCCGGCCGCATCACA | 61.470 | 61.111 | 22.85 | 0.00 | 0.00 | 3.58 |
2175 | 2215 | 3.740128 | ATCTCCGGCCGCATCACAC | 62.740 | 63.158 | 22.85 | 0.00 | 0.00 | 3.82 |
2176 | 2216 | 4.758251 | CTCCGGCCGCATCACACA | 62.758 | 66.667 | 22.85 | 0.00 | 0.00 | 3.72 |
2179 | 2219 | 2.125713 | CGGCCGCATCACACACTA | 60.126 | 61.111 | 14.67 | 0.00 | 0.00 | 2.74 |
2180 | 2220 | 1.739929 | CGGCCGCATCACACACTAA | 60.740 | 57.895 | 14.67 | 0.00 | 0.00 | 2.24 |
2181 | 2221 | 1.794222 | GGCCGCATCACACACTAAC | 59.206 | 57.895 | 0.00 | 0.00 | 0.00 | 2.34 |
2182 | 2222 | 0.953471 | GGCCGCATCACACACTAACA | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2183 | 2223 | 1.086696 | GCCGCATCACACACTAACAT | 58.913 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2184 | 2224 | 2.276201 | GCCGCATCACACACTAACATA | 58.724 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
2185 | 2225 | 2.285220 | GCCGCATCACACACTAACATAG | 59.715 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2186 | 2226 | 3.521560 | CCGCATCACACACTAACATAGT | 58.478 | 45.455 | 0.00 | 0.00 | 40.28 | 2.12 |
2187 | 2227 | 3.551890 | CCGCATCACACACTAACATAGTC | 59.448 | 47.826 | 0.00 | 0.00 | 36.76 | 2.59 |
2188 | 2228 | 3.240631 | CGCATCACACACTAACATAGTCG | 59.759 | 47.826 | 0.00 | 0.00 | 36.76 | 4.18 |
2189 | 2229 | 4.174009 | GCATCACACACTAACATAGTCGT | 58.826 | 43.478 | 0.00 | 0.00 | 36.76 | 4.34 |
2190 | 2230 | 4.265556 | GCATCACACACTAACATAGTCGTC | 59.734 | 45.833 | 0.00 | 0.00 | 36.76 | 4.20 |
2191 | 2231 | 5.641709 | CATCACACACTAACATAGTCGTCT | 58.358 | 41.667 | 0.00 | 0.00 | 36.76 | 4.18 |
2192 | 2232 | 5.700722 | TCACACACTAACATAGTCGTCTT | 57.299 | 39.130 | 0.00 | 0.00 | 36.76 | 3.01 |
2193 | 2233 | 6.080648 | TCACACACTAACATAGTCGTCTTT | 57.919 | 37.500 | 0.00 | 0.00 | 36.76 | 2.52 |
2194 | 2234 | 6.147581 | TCACACACTAACATAGTCGTCTTTC | 58.852 | 40.000 | 0.00 | 0.00 | 36.76 | 2.62 |
2195 | 2235 | 5.059343 | CACACACTAACATAGTCGTCTTTCG | 59.941 | 44.000 | 0.00 | 0.00 | 36.76 | 3.46 |
2196 | 2236 | 4.030306 | CACACTAACATAGTCGTCTTTCGC | 59.970 | 45.833 | 0.00 | 0.00 | 36.76 | 4.70 |
2197 | 2237 | 4.082895 | ACACTAACATAGTCGTCTTTCGCT | 60.083 | 41.667 | 0.00 | 0.00 | 36.76 | 4.93 |
2198 | 2238 | 4.263209 | CACTAACATAGTCGTCTTTCGCTG | 59.737 | 45.833 | 0.00 | 0.00 | 36.76 | 5.18 |
2199 | 2239 | 1.630148 | ACATAGTCGTCTTTCGCTGC | 58.370 | 50.000 | 0.00 | 0.00 | 39.67 | 5.25 |
2200 | 2240 | 0.924090 | CATAGTCGTCTTTCGCTGCC | 59.076 | 55.000 | 0.00 | 0.00 | 39.67 | 4.85 |
2201 | 2241 | 0.525668 | ATAGTCGTCTTTCGCTGCCG | 60.526 | 55.000 | 0.00 | 0.00 | 39.67 | 5.69 |
2202 | 2242 | 1.579964 | TAGTCGTCTTTCGCTGCCGA | 61.580 | 55.000 | 0.00 | 0.00 | 42.66 | 5.54 |
2203 | 2243 | 1.805945 | GTCGTCTTTCGCTGCCGAT | 60.806 | 57.895 | 0.00 | 0.00 | 43.97 | 4.18 |
2204 | 2244 | 1.805539 | TCGTCTTTCGCTGCCGATG | 60.806 | 57.895 | 0.00 | 0.00 | 43.97 | 3.84 |
2205 | 2245 | 2.094659 | CGTCTTTCGCTGCCGATGT | 61.095 | 57.895 | 0.00 | 0.00 | 43.97 | 3.06 |
2206 | 2246 | 1.626654 | CGTCTTTCGCTGCCGATGTT | 61.627 | 55.000 | 0.00 | 0.00 | 43.97 | 2.71 |
2207 | 2247 | 0.179215 | GTCTTTCGCTGCCGATGTTG | 60.179 | 55.000 | 0.00 | 0.00 | 43.97 | 3.33 |
2208 | 2248 | 0.602638 | TCTTTCGCTGCCGATGTTGT | 60.603 | 50.000 | 0.00 | 0.00 | 43.97 | 3.32 |
2209 | 2249 | 0.238289 | CTTTCGCTGCCGATGTTGTT | 59.762 | 50.000 | 0.00 | 0.00 | 43.97 | 2.83 |
2210 | 2250 | 0.040514 | TTTCGCTGCCGATGTTGTTG | 60.041 | 50.000 | 0.00 | 0.00 | 43.97 | 3.33 |
2211 | 2251 | 2.456594 | TTCGCTGCCGATGTTGTTGC | 62.457 | 55.000 | 0.00 | 0.00 | 43.97 | 4.17 |
2212 | 2252 | 2.644418 | GCTGCCGATGTTGTTGCA | 59.356 | 55.556 | 0.00 | 0.00 | 0.00 | 4.08 |
2213 | 2253 | 4.853507 | CTGCCGATGTTGTTGCAG | 57.146 | 55.556 | 0.00 | 0.00 | 44.43 | 4.41 |
2214 | 2254 | 4.471761 | TGCCGATGTTGTTGCAGA | 57.528 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2215 | 2255 | 2.712984 | TGCCGATGTTGTTGCAGAA | 58.287 | 47.368 | 0.00 | 0.00 | 0.00 | 3.02 |
2216 | 2256 | 1.028130 | TGCCGATGTTGTTGCAGAAA | 58.972 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2217 | 2257 | 1.268999 | TGCCGATGTTGTTGCAGAAAC | 60.269 | 47.619 | 6.63 | 6.63 | 39.41 | 2.78 |
2218 | 2258 | 1.001378 | GCCGATGTTGTTGCAGAAACT | 60.001 | 47.619 | 12.97 | 1.83 | 39.70 | 2.66 |
2219 | 2259 | 2.543653 | GCCGATGTTGTTGCAGAAACTT | 60.544 | 45.455 | 12.97 | 7.98 | 39.70 | 2.66 |
2220 | 2260 | 3.044986 | CCGATGTTGTTGCAGAAACTTG | 58.955 | 45.455 | 12.97 | 4.96 | 39.70 | 3.16 |
2221 | 2261 | 3.044986 | CGATGTTGTTGCAGAAACTTGG | 58.955 | 45.455 | 12.97 | 6.25 | 39.70 | 3.61 |
2222 | 2262 | 3.243035 | CGATGTTGTTGCAGAAACTTGGA | 60.243 | 43.478 | 12.97 | 0.00 | 39.70 | 3.53 |
2223 | 2263 | 3.781079 | TGTTGTTGCAGAAACTTGGAG | 57.219 | 42.857 | 12.97 | 0.00 | 39.70 | 3.86 |
2224 | 2264 | 3.088532 | TGTTGTTGCAGAAACTTGGAGT | 58.911 | 40.909 | 12.97 | 0.00 | 39.70 | 3.85 |
2225 | 2265 | 3.119531 | TGTTGTTGCAGAAACTTGGAGTG | 60.120 | 43.478 | 12.97 | 0.00 | 39.70 | 3.51 |
2226 | 2266 | 2.023673 | TGTTGCAGAAACTTGGAGTGG | 58.976 | 47.619 | 0.00 | 0.00 | 39.70 | 4.00 |
2227 | 2267 | 2.297701 | GTTGCAGAAACTTGGAGTGGA | 58.702 | 47.619 | 0.00 | 0.00 | 35.75 | 4.02 |
2228 | 2268 | 1.967319 | TGCAGAAACTTGGAGTGGAC | 58.033 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2229 | 2269 | 0.868406 | GCAGAAACTTGGAGTGGACG | 59.132 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2230 | 2270 | 1.810412 | GCAGAAACTTGGAGTGGACGT | 60.810 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
2231 | 2271 | 1.867233 | CAGAAACTTGGAGTGGACGTG | 59.133 | 52.381 | 0.00 | 0.00 | 0.00 | 4.49 |
2232 | 2272 | 1.202651 | AGAAACTTGGAGTGGACGTGG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
2233 | 2273 | 0.834612 | AAACTTGGAGTGGACGTGGA | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2234 | 2274 | 0.106149 | AACTTGGAGTGGACGTGGAC | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2235 | 2275 | 1.046472 | ACTTGGAGTGGACGTGGACA | 61.046 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2236 | 2276 | 0.321671 | CTTGGAGTGGACGTGGACAT | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2237 | 2277 | 1.548719 | CTTGGAGTGGACGTGGACATA | 59.451 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
2238 | 2278 | 0.892755 | TGGAGTGGACGTGGACATAC | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 2.39 |
2239 | 2279 | 0.892755 | GGAGTGGACGTGGACATACA | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2240 | 2280 | 1.480954 | GGAGTGGACGTGGACATACAT | 59.519 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
2241 | 2281 | 2.481449 | GGAGTGGACGTGGACATACATC | 60.481 | 54.545 | 0.00 | 0.00 | 0.00 | 3.06 |
2242 | 2282 | 2.165641 | GAGTGGACGTGGACATACATCA | 59.834 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2243 | 2283 | 2.766263 | AGTGGACGTGGACATACATCAT | 59.234 | 45.455 | 0.00 | 0.00 | 0.00 | 2.45 |
2244 | 2284 | 2.866156 | GTGGACGTGGACATACATCATG | 59.134 | 50.000 | 0.00 | 0.00 | 40.78 | 3.07 |
2245 | 2285 | 2.158971 | TGGACGTGGACATACATCATGG | 60.159 | 50.000 | 0.00 | 0.00 | 39.13 | 3.66 |
2246 | 2286 | 2.158957 | GGACGTGGACATACATCATGGT | 60.159 | 50.000 | 0.00 | 0.00 | 39.13 | 3.55 |
2247 | 2287 | 2.866156 | GACGTGGACATACATCATGGTG | 59.134 | 50.000 | 3.86 | 3.86 | 39.13 | 4.17 |
2248 | 2288 | 2.499693 | ACGTGGACATACATCATGGTGA | 59.500 | 45.455 | 14.29 | 0.00 | 39.13 | 4.02 |
2249 | 2289 | 2.866156 | CGTGGACATACATCATGGTGAC | 59.134 | 50.000 | 14.29 | 0.00 | 39.13 | 3.67 |
2250 | 2290 | 2.866156 | GTGGACATACATCATGGTGACG | 59.134 | 50.000 | 14.29 | 2.70 | 39.13 | 4.35 |
2251 | 2291 | 2.499693 | TGGACATACATCATGGTGACGT | 59.500 | 45.455 | 14.29 | 6.17 | 39.13 | 4.34 |
2258 | 2298 | 2.359107 | CATGGTGACGTGGCTGCT | 60.359 | 61.111 | 0.00 | 0.00 | 43.88 | 4.24 |
2259 | 2299 | 1.079197 | CATGGTGACGTGGCTGCTA | 60.079 | 57.895 | 0.00 | 0.00 | 43.88 | 3.49 |
2260 | 2300 | 1.079127 | ATGGTGACGTGGCTGCTAC | 60.079 | 57.895 | 6.02 | 6.02 | 0.00 | 3.58 |
2261 | 2301 | 1.544825 | ATGGTGACGTGGCTGCTACT | 61.545 | 55.000 | 14.29 | 1.44 | 0.00 | 2.57 |
2262 | 2302 | 0.896479 | TGGTGACGTGGCTGCTACTA | 60.896 | 55.000 | 14.29 | 0.00 | 0.00 | 1.82 |
2263 | 2303 | 0.458025 | GGTGACGTGGCTGCTACTAC | 60.458 | 60.000 | 14.29 | 9.84 | 0.00 | 2.73 |
2264 | 2304 | 0.797249 | GTGACGTGGCTGCTACTACG | 60.797 | 60.000 | 14.29 | 14.16 | 41.86 | 3.51 |
2281 | 2321 | 0.529378 | ACGGTGATACGTCTCCAACC | 59.471 | 55.000 | 0.00 | 0.00 | 45.08 | 3.77 |
2772 | 2826 | 1.326951 | TTCGATCACGGAGGGCATCA | 61.327 | 55.000 | 0.08 | 0.00 | 40.21 | 3.07 |
2843 | 2898 | 5.618616 | ACCTAAGGGTCCATAGCTAGTAT | 57.381 | 43.478 | 0.00 | 0.00 | 43.38 | 2.12 |
2851 | 2906 | 6.448714 | AGGGTCCATAGCTAGTATCTAGATGA | 59.551 | 42.308 | 15.79 | 0.00 | 0.00 | 2.92 |
2865 | 2920 | 8.713971 | AGTATCTAGATGACTTCTTCTCTCTCA | 58.286 | 37.037 | 15.79 | 0.00 | 35.79 | 3.27 |
2888 | 2943 | 8.812513 | TCAATGATCTTCAATACCATGTTCTT | 57.187 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
3059 | 3114 | 6.532657 | TGTATTTCTCTTCGAATTACCGGTTC | 59.467 | 38.462 | 15.04 | 2.84 | 37.53 | 3.62 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 6.360370 | TGCAACTAACTCACTCCTTCTTAT | 57.640 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
212 | 214 | 6.818281 | AGGGTAATACCAATTGCACTAGTA | 57.182 | 37.500 | 12.03 | 0.00 | 39.39 | 1.82 |
374 | 378 | 5.011738 | ACATCCGTATGTAGTCCCTTATTGG | 59.988 | 44.000 | 0.00 | 0.00 | 44.66 | 3.16 |
470 | 474 | 7.939781 | TCCCTCCATTCCTAAATAAAACTCTT | 58.060 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
471 | 475 | 7.184753 | ACTCCCTCCATTCCTAAATAAAACTCT | 59.815 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
477 | 481 | 5.850028 | CCCTACTCCCTCCATTCCTAAATAA | 59.150 | 44.000 | 0.00 | 0.00 | 0.00 | 1.40 |
496 | 500 | 9.114952 | CTTCCTTTTCTATGAGAATTTCCCTAC | 57.885 | 37.037 | 0.00 | 0.00 | 33.67 | 3.18 |
531 | 535 | 5.957774 | ACCAATGCCACTAATACATTCCTTT | 59.042 | 36.000 | 0.00 | 0.00 | 31.82 | 3.11 |
535 | 539 | 8.512138 | GGTATTACCAATGCCACTAATACATTC | 58.488 | 37.037 | 8.03 | 0.00 | 42.52 | 2.67 |
630 | 634 | 8.396619 | AGGGTAATACCAAAGGTACTAATTCA | 57.603 | 34.615 | 12.03 | 0.00 | 41.31 | 2.57 |
985 | 992 | 7.639378 | TCTTCTTAAAGGGTATGCCACTAATT | 58.361 | 34.615 | 1.04 | 0.00 | 36.17 | 1.40 |
1037 | 1044 | 7.603963 | TCTTCGCATACTATTAAAAAGTGCA | 57.396 | 32.000 | 4.52 | 0.00 | 0.00 | 4.57 |
1127 | 1134 | 7.829224 | TGATCTATGGGTATATTTGGGATGT | 57.171 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1228 | 1236 | 2.202987 | CGGACTCCCAGCAGATGC | 60.203 | 66.667 | 0.00 | 0.00 | 42.49 | 3.91 |
1236 | 1244 | 2.675423 | CACGTCCTCGGACTCCCA | 60.675 | 66.667 | 13.74 | 0.00 | 42.54 | 4.37 |
1245 | 1253 | 1.469940 | CCATGACACTAGCACGTCCTC | 60.470 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
1492 | 1509 | 4.329545 | GGCACTCCAGGAACCGCA | 62.330 | 66.667 | 6.72 | 0.00 | 0.00 | 5.69 |
1518 | 1536 | 2.444895 | GGCATCCTCCTCCTCCGT | 60.445 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
1621 | 1639 | 1.299926 | GCGACGTTGGAGTCAGTGT | 60.300 | 57.895 | 4.64 | 0.00 | 40.98 | 3.55 |
1662 | 1680 | 3.470567 | GTCGTTGCTCCAGTCGCG | 61.471 | 66.667 | 0.00 | 0.00 | 0.00 | 5.87 |
1791 | 1809 | 2.552585 | TTCGCCCGTCAACCGATCTC | 62.553 | 60.000 | 0.00 | 0.00 | 39.56 | 2.75 |
1807 | 1825 | 7.692908 | ATCACCAACACAATAAAAACTTTCG | 57.307 | 32.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1849 | 1867 | 4.516698 | GGTAGCGCGCCCTTATAGTATATA | 59.483 | 45.833 | 30.33 | 5.51 | 0.00 | 0.86 |
1872 | 1890 | 1.156736 | AAAGAATCAGTTGCCGACCG | 58.843 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1893 | 1912 | 1.439679 | GCCAGACGACGGATCTTTTT | 58.560 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1907 | 1926 | 0.681733 | GAATGGGATAGCTCGCCAGA | 59.318 | 55.000 | 7.05 | 0.00 | 33.54 | 3.86 |
1926 | 1945 | 4.813161 | AGAAATTGATGGCTCGTATCACAG | 59.187 | 41.667 | 0.00 | 0.00 | 34.50 | 3.66 |
1927 | 1946 | 4.769688 | AGAAATTGATGGCTCGTATCACA | 58.230 | 39.130 | 0.00 | 0.00 | 34.50 | 3.58 |
1945 | 1964 | 9.868277 | TTGTTGCAGAAAATTAGAGAAAAGAAA | 57.132 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
1973 | 2001 | 7.340487 | AGAGAAGAGGATGTTTTCAACAAAAGT | 59.660 | 33.333 | 0.00 | 0.00 | 45.86 | 2.66 |
2083 | 2123 | 7.039293 | AGGAGGTTTTGTAACAGTTGACTTTTT | 60.039 | 33.333 | 0.00 | 0.00 | 35.92 | 1.94 |
2084 | 2124 | 6.436218 | AGGAGGTTTTGTAACAGTTGACTTTT | 59.564 | 34.615 | 0.00 | 0.00 | 35.92 | 2.27 |
2085 | 2125 | 5.949952 | AGGAGGTTTTGTAACAGTTGACTTT | 59.050 | 36.000 | 0.00 | 0.00 | 35.92 | 2.66 |
2086 | 2126 | 5.506708 | AGGAGGTTTTGTAACAGTTGACTT | 58.493 | 37.500 | 0.00 | 0.00 | 35.92 | 3.01 |
2087 | 2127 | 5.104485 | AGAGGAGGTTTTGTAACAGTTGACT | 60.104 | 40.000 | 0.00 | 0.00 | 35.92 | 3.41 |
2088 | 2128 | 5.123936 | AGAGGAGGTTTTGTAACAGTTGAC | 58.876 | 41.667 | 0.00 | 0.00 | 35.92 | 3.18 |
2089 | 2129 | 5.367945 | AGAGGAGGTTTTGTAACAGTTGA | 57.632 | 39.130 | 0.00 | 0.00 | 35.92 | 3.18 |
2090 | 2130 | 6.318900 | AGAAAGAGGAGGTTTTGTAACAGTTG | 59.681 | 38.462 | 0.00 | 0.00 | 35.92 | 3.16 |
2091 | 2131 | 6.424032 | AGAAAGAGGAGGTTTTGTAACAGTT | 58.576 | 36.000 | 0.00 | 0.00 | 35.92 | 3.16 |
2092 | 2132 | 6.002653 | AGAAAGAGGAGGTTTTGTAACAGT | 57.997 | 37.500 | 0.00 | 0.00 | 35.92 | 3.55 |
2093 | 2133 | 8.622948 | ATTAGAAAGAGGAGGTTTTGTAACAG | 57.377 | 34.615 | 0.00 | 0.00 | 35.92 | 3.16 |
2094 | 2134 | 8.990163 | AATTAGAAAGAGGAGGTTTTGTAACA | 57.010 | 30.769 | 0.00 | 0.00 | 35.92 | 2.41 |
2119 | 2159 | 7.899648 | TTCCACAAGGGTCTTGTTATAAAAA | 57.100 | 32.000 | 10.21 | 0.00 | 38.11 | 1.94 |
2120 | 2160 | 7.899648 | TTTCCACAAGGGTCTTGTTATAAAA | 57.100 | 32.000 | 10.21 | 6.57 | 38.11 | 1.52 |
2121 | 2161 | 7.899648 | TTTTCCACAAGGGTCTTGTTATAAA | 57.100 | 32.000 | 10.21 | 8.49 | 38.11 | 1.40 |
2122 | 2162 | 7.899648 | TTTTTCCACAAGGGTCTTGTTATAA | 57.100 | 32.000 | 10.21 | 3.67 | 38.11 | 0.98 |
2123 | 2163 | 8.364142 | CAATTTTTCCACAAGGGTCTTGTTATA | 58.636 | 33.333 | 10.21 | 0.00 | 38.11 | 0.98 |
2124 | 2164 | 6.994421 | ATTTTTCCACAAGGGTCTTGTTAT | 57.006 | 33.333 | 10.21 | 0.00 | 38.11 | 1.89 |
2125 | 2165 | 6.578023 | CAATTTTTCCACAAGGGTCTTGTTA | 58.422 | 36.000 | 10.21 | 0.58 | 38.11 | 2.41 |
2126 | 2166 | 5.427378 | CAATTTTTCCACAAGGGTCTTGTT | 58.573 | 37.500 | 10.21 | 0.00 | 38.11 | 2.83 |
2127 | 2167 | 4.683129 | GCAATTTTTCCACAAGGGTCTTGT | 60.683 | 41.667 | 7.41 | 7.41 | 38.11 | 3.16 |
2128 | 2168 | 3.809279 | GCAATTTTTCCACAAGGGTCTTG | 59.191 | 43.478 | 6.15 | 6.15 | 38.11 | 3.02 |
2129 | 2169 | 3.454082 | TGCAATTTTTCCACAAGGGTCTT | 59.546 | 39.130 | 0.00 | 0.00 | 38.11 | 3.01 |
2130 | 2170 | 3.037549 | TGCAATTTTTCCACAAGGGTCT | 58.962 | 40.909 | 0.00 | 0.00 | 38.11 | 3.85 |
2131 | 2171 | 3.467374 | TGCAATTTTTCCACAAGGGTC | 57.533 | 42.857 | 0.00 | 0.00 | 38.11 | 4.46 |
2132 | 2172 | 3.922171 | TTGCAATTTTTCCACAAGGGT | 57.078 | 38.095 | 0.00 | 0.00 | 38.11 | 4.34 |
2133 | 2173 | 5.762218 | TGTTATTGCAATTTTTCCACAAGGG | 59.238 | 36.000 | 18.75 | 0.00 | 34.83 | 3.95 |
2134 | 2174 | 6.857777 | TGTTATTGCAATTTTTCCACAAGG | 57.142 | 33.333 | 18.75 | 0.00 | 0.00 | 3.61 |
2135 | 2175 | 8.314143 | AGATGTTATTGCAATTTTTCCACAAG | 57.686 | 30.769 | 18.75 | 0.00 | 0.00 | 3.16 |
2136 | 2176 | 7.387397 | GGAGATGTTATTGCAATTTTTCCACAA | 59.613 | 33.333 | 18.75 | 0.00 | 0.00 | 3.33 |
2137 | 2177 | 6.873076 | GGAGATGTTATTGCAATTTTTCCACA | 59.127 | 34.615 | 18.75 | 11.11 | 0.00 | 4.17 |
2138 | 2178 | 6.034898 | CGGAGATGTTATTGCAATTTTTCCAC | 59.965 | 38.462 | 18.75 | 6.02 | 0.00 | 4.02 |
2139 | 2179 | 6.098679 | CGGAGATGTTATTGCAATTTTTCCA | 58.901 | 36.000 | 18.75 | 7.81 | 0.00 | 3.53 |
2140 | 2180 | 5.519927 | CCGGAGATGTTATTGCAATTTTTCC | 59.480 | 40.000 | 18.75 | 14.19 | 0.00 | 3.13 |
2141 | 2181 | 5.005682 | GCCGGAGATGTTATTGCAATTTTTC | 59.994 | 40.000 | 18.75 | 9.80 | 0.00 | 2.29 |
2142 | 2182 | 4.869861 | GCCGGAGATGTTATTGCAATTTTT | 59.130 | 37.500 | 18.75 | 0.27 | 0.00 | 1.94 |
2143 | 2183 | 4.432712 | GCCGGAGATGTTATTGCAATTTT | 58.567 | 39.130 | 18.75 | 0.00 | 0.00 | 1.82 |
2144 | 2184 | 3.181476 | GGCCGGAGATGTTATTGCAATTT | 60.181 | 43.478 | 18.75 | 0.00 | 0.00 | 1.82 |
2145 | 2185 | 2.362077 | GGCCGGAGATGTTATTGCAATT | 59.638 | 45.455 | 18.75 | 0.00 | 0.00 | 2.32 |
2146 | 2186 | 1.956477 | GGCCGGAGATGTTATTGCAAT | 59.044 | 47.619 | 17.56 | 17.56 | 0.00 | 3.56 |
2147 | 2187 | 1.388547 | GGCCGGAGATGTTATTGCAA | 58.611 | 50.000 | 5.05 | 0.00 | 0.00 | 4.08 |
2148 | 2188 | 0.813610 | CGGCCGGAGATGTTATTGCA | 60.814 | 55.000 | 20.10 | 0.00 | 0.00 | 4.08 |
2149 | 2189 | 1.941812 | CGGCCGGAGATGTTATTGC | 59.058 | 57.895 | 20.10 | 0.00 | 0.00 | 3.56 |
2150 | 2190 | 0.813610 | TGCGGCCGGAGATGTTATTG | 60.814 | 55.000 | 29.38 | 0.00 | 0.00 | 1.90 |
2151 | 2191 | 0.108585 | ATGCGGCCGGAGATGTTATT | 59.891 | 50.000 | 29.38 | 2.58 | 0.00 | 1.40 |
2152 | 2192 | 0.320771 | GATGCGGCCGGAGATGTTAT | 60.321 | 55.000 | 29.38 | 6.87 | 0.00 | 1.89 |
2153 | 2193 | 1.069090 | GATGCGGCCGGAGATGTTA | 59.931 | 57.895 | 29.38 | 0.00 | 0.00 | 2.41 |
2154 | 2194 | 2.203070 | GATGCGGCCGGAGATGTT | 60.203 | 61.111 | 29.38 | 8.72 | 0.00 | 2.71 |
2155 | 2195 | 3.469970 | TGATGCGGCCGGAGATGT | 61.470 | 61.111 | 29.38 | 9.20 | 0.00 | 3.06 |
2156 | 2196 | 2.969238 | GTGATGCGGCCGGAGATG | 60.969 | 66.667 | 29.38 | 0.00 | 0.00 | 2.90 |
2157 | 2197 | 3.469970 | TGTGATGCGGCCGGAGAT | 61.470 | 61.111 | 29.38 | 10.61 | 0.00 | 2.75 |
2158 | 2198 | 4.451150 | GTGTGATGCGGCCGGAGA | 62.451 | 66.667 | 29.38 | 12.70 | 0.00 | 3.71 |
2159 | 2199 | 4.758251 | TGTGTGATGCGGCCGGAG | 62.758 | 66.667 | 29.38 | 0.00 | 0.00 | 4.63 |
2161 | 2201 | 3.657448 | TAGTGTGTGATGCGGCCGG | 62.657 | 63.158 | 29.38 | 8.95 | 0.00 | 6.13 |
2162 | 2202 | 1.739929 | TTAGTGTGTGATGCGGCCG | 60.740 | 57.895 | 24.05 | 24.05 | 0.00 | 6.13 |
2163 | 2203 | 0.953471 | TGTTAGTGTGTGATGCGGCC | 60.953 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2164 | 2204 | 1.086696 | ATGTTAGTGTGTGATGCGGC | 58.913 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
2165 | 2205 | 3.521560 | ACTATGTTAGTGTGTGATGCGG | 58.478 | 45.455 | 0.00 | 0.00 | 37.69 | 5.69 |
2166 | 2206 | 3.240631 | CGACTATGTTAGTGTGTGATGCG | 59.759 | 47.826 | 0.00 | 0.00 | 39.59 | 4.73 |
2167 | 2207 | 4.174009 | ACGACTATGTTAGTGTGTGATGC | 58.826 | 43.478 | 0.00 | 0.00 | 39.59 | 3.91 |
2168 | 2208 | 5.641709 | AGACGACTATGTTAGTGTGTGATG | 58.358 | 41.667 | 0.00 | 0.00 | 39.59 | 3.07 |
2169 | 2209 | 5.899120 | AGACGACTATGTTAGTGTGTGAT | 57.101 | 39.130 | 0.00 | 0.00 | 39.59 | 3.06 |
2170 | 2210 | 5.700722 | AAGACGACTATGTTAGTGTGTGA | 57.299 | 39.130 | 0.00 | 0.00 | 39.59 | 3.58 |
2171 | 2211 | 5.059343 | CGAAAGACGACTATGTTAGTGTGTG | 59.941 | 44.000 | 0.00 | 0.00 | 45.77 | 3.82 |
2172 | 2212 | 5.152097 | CGAAAGACGACTATGTTAGTGTGT | 58.848 | 41.667 | 0.00 | 0.00 | 45.77 | 3.72 |
2173 | 2213 | 4.030306 | GCGAAAGACGACTATGTTAGTGTG | 59.970 | 45.833 | 0.00 | 0.00 | 45.77 | 3.82 |
2174 | 2214 | 4.082895 | AGCGAAAGACGACTATGTTAGTGT | 60.083 | 41.667 | 0.00 | 0.00 | 45.77 | 3.55 |
2175 | 2215 | 4.263209 | CAGCGAAAGACGACTATGTTAGTG | 59.737 | 45.833 | 0.00 | 0.00 | 45.77 | 2.74 |
2176 | 2216 | 4.413087 | CAGCGAAAGACGACTATGTTAGT | 58.587 | 43.478 | 0.00 | 0.00 | 45.77 | 2.24 |
2177 | 2217 | 3.240861 | GCAGCGAAAGACGACTATGTTAG | 59.759 | 47.826 | 0.00 | 0.00 | 45.77 | 2.34 |
2178 | 2218 | 3.176708 | GCAGCGAAAGACGACTATGTTA | 58.823 | 45.455 | 0.00 | 0.00 | 45.77 | 2.41 |
2179 | 2219 | 1.993370 | GCAGCGAAAGACGACTATGTT | 59.007 | 47.619 | 0.00 | 0.00 | 45.77 | 2.71 |
2180 | 2220 | 1.630148 | GCAGCGAAAGACGACTATGT | 58.370 | 50.000 | 0.00 | 0.00 | 45.77 | 2.29 |
2181 | 2221 | 0.924090 | GGCAGCGAAAGACGACTATG | 59.076 | 55.000 | 0.00 | 0.00 | 45.77 | 2.23 |
2182 | 2222 | 0.525668 | CGGCAGCGAAAGACGACTAT | 60.526 | 55.000 | 0.00 | 0.00 | 45.77 | 2.12 |
2183 | 2223 | 1.154093 | CGGCAGCGAAAGACGACTA | 60.154 | 57.895 | 0.00 | 0.00 | 45.77 | 2.59 |
2184 | 2224 | 2.214181 | ATCGGCAGCGAAAGACGACT | 62.214 | 55.000 | 2.25 | 0.00 | 45.77 | 4.18 |
2185 | 2225 | 1.805945 | ATCGGCAGCGAAAGACGAC | 60.806 | 57.895 | 2.25 | 0.00 | 45.77 | 4.34 |
2186 | 2226 | 1.805539 | CATCGGCAGCGAAAGACGA | 60.806 | 57.895 | 2.69 | 2.69 | 45.77 | 4.20 |
2187 | 2227 | 1.626654 | AACATCGGCAGCGAAAGACG | 61.627 | 55.000 | 0.00 | 0.00 | 45.66 | 4.18 |
2188 | 2228 | 0.179215 | CAACATCGGCAGCGAAAGAC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2189 | 2229 | 0.602638 | ACAACATCGGCAGCGAAAGA | 60.603 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2190 | 2230 | 0.238289 | AACAACATCGGCAGCGAAAG | 59.762 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
2191 | 2231 | 0.040514 | CAACAACATCGGCAGCGAAA | 60.041 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2192 | 2232 | 1.573932 | CAACAACATCGGCAGCGAA | 59.426 | 52.632 | 0.00 | 0.00 | 0.00 | 4.70 |
2193 | 2233 | 2.965147 | GCAACAACATCGGCAGCGA | 61.965 | 57.895 | 0.00 | 0.00 | 0.00 | 4.93 |
2194 | 2234 | 2.502510 | GCAACAACATCGGCAGCG | 60.503 | 61.111 | 0.00 | 0.00 | 0.00 | 5.18 |
2195 | 2235 | 1.443194 | CTGCAACAACATCGGCAGC | 60.443 | 57.895 | 0.00 | 0.00 | 46.00 | 5.25 |
2196 | 2236 | 4.853507 | CTGCAACAACATCGGCAG | 57.146 | 55.556 | 0.00 | 0.00 | 46.47 | 4.85 |
2197 | 2237 | 1.028130 | TTTCTGCAACAACATCGGCA | 58.972 | 45.000 | 0.00 | 0.00 | 34.66 | 5.69 |
2198 | 2238 | 1.001378 | AGTTTCTGCAACAACATCGGC | 60.001 | 47.619 | 9.69 | 0.00 | 37.93 | 5.54 |
2199 | 2239 | 3.044986 | CAAGTTTCTGCAACAACATCGG | 58.955 | 45.455 | 9.69 | 0.00 | 37.93 | 4.18 |
2200 | 2240 | 3.044986 | CCAAGTTTCTGCAACAACATCG | 58.955 | 45.455 | 9.69 | 0.00 | 37.93 | 3.84 |
2201 | 2241 | 4.202050 | ACTCCAAGTTTCTGCAACAACATC | 60.202 | 41.667 | 9.69 | 0.00 | 37.93 | 3.06 |
2202 | 2242 | 3.701040 | ACTCCAAGTTTCTGCAACAACAT | 59.299 | 39.130 | 9.69 | 0.00 | 37.93 | 2.71 |
2203 | 2243 | 3.088532 | ACTCCAAGTTTCTGCAACAACA | 58.911 | 40.909 | 9.69 | 0.00 | 37.93 | 3.33 |
2204 | 2244 | 3.438360 | CACTCCAAGTTTCTGCAACAAC | 58.562 | 45.455 | 0.00 | 0.00 | 37.93 | 3.32 |
2205 | 2245 | 2.426738 | CCACTCCAAGTTTCTGCAACAA | 59.573 | 45.455 | 0.00 | 0.00 | 37.93 | 2.83 |
2206 | 2246 | 2.023673 | CCACTCCAAGTTTCTGCAACA | 58.976 | 47.619 | 0.00 | 0.00 | 37.93 | 3.33 |
2207 | 2247 | 2.033424 | GTCCACTCCAAGTTTCTGCAAC | 59.967 | 50.000 | 0.00 | 0.00 | 35.32 | 4.17 |
2208 | 2248 | 2.297701 | GTCCACTCCAAGTTTCTGCAA | 58.702 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
2209 | 2249 | 1.810031 | CGTCCACTCCAAGTTTCTGCA | 60.810 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
2210 | 2250 | 0.868406 | CGTCCACTCCAAGTTTCTGC | 59.132 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2211 | 2251 | 1.867233 | CACGTCCACTCCAAGTTTCTG | 59.133 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
2212 | 2252 | 1.202651 | CCACGTCCACTCCAAGTTTCT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
2213 | 2253 | 1.202604 | TCCACGTCCACTCCAAGTTTC | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
2214 | 2254 | 0.834612 | TCCACGTCCACTCCAAGTTT | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2215 | 2255 | 0.106149 | GTCCACGTCCACTCCAAGTT | 59.894 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2216 | 2256 | 1.046472 | TGTCCACGTCCACTCCAAGT | 61.046 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2217 | 2257 | 0.321671 | ATGTCCACGTCCACTCCAAG | 59.678 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2218 | 2258 | 1.274167 | GTATGTCCACGTCCACTCCAA | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
2219 | 2259 | 0.892755 | GTATGTCCACGTCCACTCCA | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2220 | 2260 | 0.892755 | TGTATGTCCACGTCCACTCC | 59.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2221 | 2261 | 2.165641 | TGATGTATGTCCACGTCCACTC | 59.834 | 50.000 | 0.00 | 0.00 | 34.17 | 3.51 |
2222 | 2262 | 2.176045 | TGATGTATGTCCACGTCCACT | 58.824 | 47.619 | 0.00 | 0.00 | 34.17 | 4.00 |
2223 | 2263 | 2.665649 | TGATGTATGTCCACGTCCAC | 57.334 | 50.000 | 0.00 | 0.00 | 34.17 | 4.02 |
2224 | 2264 | 2.158971 | CCATGATGTATGTCCACGTCCA | 60.159 | 50.000 | 0.00 | 0.00 | 34.17 | 4.02 |
2225 | 2265 | 2.158957 | ACCATGATGTATGTCCACGTCC | 60.159 | 50.000 | 0.00 | 0.00 | 34.17 | 4.79 |
2226 | 2266 | 2.866156 | CACCATGATGTATGTCCACGTC | 59.134 | 50.000 | 0.00 | 0.00 | 34.87 | 4.34 |
2227 | 2267 | 2.499693 | TCACCATGATGTATGTCCACGT | 59.500 | 45.455 | 0.00 | 0.00 | 34.87 | 4.49 |
2228 | 2268 | 2.866156 | GTCACCATGATGTATGTCCACG | 59.134 | 50.000 | 0.00 | 0.00 | 34.87 | 4.94 |
2229 | 2269 | 2.866156 | CGTCACCATGATGTATGTCCAC | 59.134 | 50.000 | 0.00 | 0.00 | 34.87 | 4.02 |
2230 | 2270 | 2.499693 | ACGTCACCATGATGTATGTCCA | 59.500 | 45.455 | 1.81 | 0.00 | 44.16 | 4.02 |
2231 | 2271 | 2.866156 | CACGTCACCATGATGTATGTCC | 59.134 | 50.000 | 3.44 | 0.00 | 44.17 | 4.02 |
2232 | 2272 | 2.866156 | CCACGTCACCATGATGTATGTC | 59.134 | 50.000 | 3.44 | 0.00 | 44.17 | 3.06 |
2233 | 2273 | 2.905075 | CCACGTCACCATGATGTATGT | 58.095 | 47.619 | 3.44 | 0.00 | 44.17 | 2.29 |
2234 | 2274 | 1.599071 | GCCACGTCACCATGATGTATG | 59.401 | 52.381 | 3.44 | 0.63 | 44.17 | 2.39 |
2235 | 2275 | 1.486310 | AGCCACGTCACCATGATGTAT | 59.514 | 47.619 | 3.44 | 0.00 | 44.17 | 2.29 |
2236 | 2276 | 0.901827 | AGCCACGTCACCATGATGTA | 59.098 | 50.000 | 3.44 | 0.00 | 44.17 | 2.29 |
2237 | 2277 | 0.674581 | CAGCCACGTCACCATGATGT | 60.675 | 55.000 | 0.00 | 0.00 | 46.70 | 3.06 |
2238 | 2278 | 1.985447 | GCAGCCACGTCACCATGATG | 61.985 | 60.000 | 0.00 | 0.00 | 39.24 | 3.07 |
2239 | 2279 | 1.746615 | GCAGCCACGTCACCATGAT | 60.747 | 57.895 | 0.00 | 0.00 | 0.00 | 2.45 |
2240 | 2280 | 1.540435 | TAGCAGCCACGTCACCATGA | 61.540 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2241 | 2281 | 1.079197 | TAGCAGCCACGTCACCATG | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.66 |
2242 | 2282 | 1.079127 | GTAGCAGCCACGTCACCAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
2243 | 2283 | 0.896479 | TAGTAGCAGCCACGTCACCA | 60.896 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2244 | 2284 | 0.458025 | GTAGTAGCAGCCACGTCACC | 60.458 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2245 | 2285 | 0.797249 | CGTAGTAGCAGCCACGTCAC | 60.797 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2246 | 2286 | 1.504900 | CGTAGTAGCAGCCACGTCA | 59.495 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
2247 | 2287 | 1.226603 | CCGTAGTAGCAGCCACGTC | 60.227 | 63.158 | 0.00 | 0.00 | 32.66 | 4.34 |
2248 | 2288 | 1.975407 | ACCGTAGTAGCAGCCACGT | 60.975 | 57.895 | 0.00 | 0.00 | 32.66 | 4.49 |
2249 | 2289 | 1.516386 | CACCGTAGTAGCAGCCACG | 60.516 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
2250 | 2290 | 0.460311 | ATCACCGTAGTAGCAGCCAC | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2251 | 2291 | 1.679680 | GTATCACCGTAGTAGCAGCCA | 59.320 | 52.381 | 0.00 | 0.00 | 0.00 | 4.75 |
2252 | 2292 | 1.334779 | CGTATCACCGTAGTAGCAGCC | 60.335 | 57.143 | 0.00 | 0.00 | 0.00 | 4.85 |
2253 | 2293 | 1.332997 | ACGTATCACCGTAGTAGCAGC | 59.667 | 52.381 | 0.00 | 0.00 | 39.73 | 5.25 |
2254 | 2294 | 2.871022 | AGACGTATCACCGTAGTAGCAG | 59.129 | 50.000 | 0.00 | 0.00 | 41.98 | 4.24 |
2255 | 2295 | 2.868583 | GAGACGTATCACCGTAGTAGCA | 59.131 | 50.000 | 5.07 | 0.00 | 41.98 | 3.49 |
2256 | 2296 | 2.222911 | GGAGACGTATCACCGTAGTAGC | 59.777 | 54.545 | 12.92 | 0.00 | 41.98 | 3.58 |
2257 | 2297 | 3.461061 | TGGAGACGTATCACCGTAGTAG | 58.539 | 50.000 | 12.92 | 0.00 | 41.98 | 2.57 |
2258 | 2298 | 3.541996 | TGGAGACGTATCACCGTAGTA | 57.458 | 47.619 | 12.92 | 0.00 | 41.98 | 1.82 |
2259 | 2299 | 2.408271 | TGGAGACGTATCACCGTAGT | 57.592 | 50.000 | 12.92 | 0.00 | 41.98 | 2.73 |
2260 | 2300 | 2.223433 | GGTTGGAGACGTATCACCGTAG | 60.223 | 54.545 | 12.92 | 0.00 | 41.98 | 3.51 |
2261 | 2301 | 1.745087 | GGTTGGAGACGTATCACCGTA | 59.255 | 52.381 | 12.92 | 0.00 | 41.98 | 4.02 |
2262 | 2302 | 0.529378 | GGTTGGAGACGTATCACCGT | 59.471 | 55.000 | 12.92 | 0.00 | 45.18 | 4.83 |
2263 | 2303 | 0.815734 | AGGTTGGAGACGTATCACCG | 59.184 | 55.000 | 12.92 | 0.00 | 38.37 | 4.94 |
2373 | 2414 | 7.689559 | GCACTGGGCTCTAGGTTAATAAGTTAT | 60.690 | 40.741 | 0.00 | 0.00 | 40.25 | 1.89 |
2441 | 2486 | 8.746052 | ATTCCGTTTGGACTTCATTTGATATA | 57.254 | 30.769 | 0.00 | 0.00 | 46.45 | 0.86 |
2452 | 2497 | 8.852135 | TCATAAAGTTTTATTCCGTTTGGACTT | 58.148 | 29.630 | 0.00 | 0.00 | 46.45 | 3.01 |
2654 | 2708 | 4.524802 | ATTTTGGTGGATGCCTCTGATA | 57.475 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
2696 | 2750 | 2.739943 | TGGGATCTCACGAGAACAGAT | 58.260 | 47.619 | 0.00 | 0.00 | 41.36 | 2.90 |
2772 | 2826 | 0.178953 | AGGGCAGCAAGGTTGATGTT | 60.179 | 50.000 | 9.53 | 0.00 | 45.71 | 2.71 |
2843 | 2898 | 8.052141 | TCATTGAGAGAGAAGAAGTCATCTAGA | 58.948 | 37.037 | 0.00 | 0.00 | 37.42 | 2.43 |
2851 | 2906 | 7.479352 | TGAAGATCATTGAGAGAGAAGAAGT | 57.521 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2865 | 2920 | 9.118300 | GAGAAGAACATGGTATTGAAGATCATT | 57.882 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2888 | 2943 | 5.067936 | GGATAGAACTCCAAGAACATCGAGA | 59.932 | 44.000 | 0.00 | 0.00 | 35.24 | 4.04 |
2996 | 3051 | 9.017509 | TCATGCATAAAAGAGTTCAGAAAAGAT | 57.982 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
3059 | 3114 | 2.919666 | CAATCTAGTTGGCCAAACCG | 57.080 | 50.000 | 22.47 | 11.23 | 43.94 | 4.44 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.