Multiple sequence alignment - TraesCS7D01G539800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G539800 chr7D 100.000 2462 0 0 1 2462 629945905 629943444 0.000000e+00 4547.0
1 TraesCS7D01G539800 chr7D 74.132 2161 480 60 302 2427 630456211 630458327 0.000000e+00 821.0
2 TraesCS7D01G539800 chr7D 78.008 773 139 25 316 1071 417916012 417916770 8.020000e-125 457.0
3 TraesCS7D01G539800 chr3D 74.977 2202 471 66 301 2462 611194183 611192022 0.000000e+00 941.0
4 TraesCS7D01G539800 chr3B 73.803 2088 468 68 414 2461 730828748 730826700 0.000000e+00 752.0
5 TraesCS7D01G539800 chr3B 100.000 32 0 0 1481 1512 96642505 96642474 2.640000e-05 60.2
6 TraesCS7D01G539800 chr1B 73.645 1753 387 59 496 2207 215536770 215538488 2.090000e-170 608.0
7 TraesCS7D01G539800 chr6B 75.068 1107 245 19 4 1096 632494772 632493683 1.020000e-133 486.0
8 TraesCS7D01G539800 chr7A 77.243 457 100 4 2008 2462 80969252 80968798 5.220000e-67 265.0
9 TraesCS7D01G539800 chr3A 76.972 469 94 11 2000 2462 18770528 18770068 3.140000e-64 255.0
10 TraesCS7D01G539800 chr3A 74.340 265 53 11 801 1054 706549075 706549335 5.600000e-17 99.0
11 TraesCS7D01G539800 chr2A 77.179 390 76 9 699 1078 115763206 115762820 5.330000e-52 215.0
12 TraesCS7D01G539800 chr4D 70.356 759 188 26 319 1056 17854998 17854256 1.200000e-23 121.0
13 TraesCS7D01G539800 chr2B 72.087 412 103 11 2057 2462 182136565 182136970 2.000000e-21 113.0
14 TraesCS7D01G539800 chr2D 70.171 761 187 30 319 1056 357280022 357280765 7.200000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G539800 chr7D 629943444 629945905 2461 True 4547 4547 100.000 1 2462 1 chr7D.!!$R1 2461
1 TraesCS7D01G539800 chr7D 630456211 630458327 2116 False 821 821 74.132 302 2427 1 chr7D.!!$F2 2125
2 TraesCS7D01G539800 chr7D 417916012 417916770 758 False 457 457 78.008 316 1071 1 chr7D.!!$F1 755
3 TraesCS7D01G539800 chr3D 611192022 611194183 2161 True 941 941 74.977 301 2462 1 chr3D.!!$R1 2161
4 TraesCS7D01G539800 chr3B 730826700 730828748 2048 True 752 752 73.803 414 2461 1 chr3B.!!$R2 2047
5 TraesCS7D01G539800 chr1B 215536770 215538488 1718 False 608 608 73.645 496 2207 1 chr1B.!!$F1 1711
6 TraesCS7D01G539800 chr6B 632493683 632494772 1089 True 486 486 75.068 4 1096 1 chr6B.!!$R1 1092

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.032813 AATCCTGCTCCACAATGGGG 60.033 55.0 0.0 0.0 42.32 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2065 0.109532 GGGGCTTTCTAGATCCAGGC 59.89 60.0 10.59 10.59 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.761711 TTGACCCTATCCCCACCAAA 58.238 50.000 0.00 0.00 0.00 3.28
32 33 2.243736 TGACCCTATCCCCACCAAATTC 59.756 50.000 0.00 0.00 0.00 2.17
35 36 2.023501 CCCTATCCCCACCAAATTCCAA 60.024 50.000 0.00 0.00 0.00 3.53
36 37 3.031013 CCTATCCCCACCAAATTCCAAC 58.969 50.000 0.00 0.00 0.00 3.77
39 40 4.625225 ATCCCCACCAAATTCCAACTAT 57.375 40.909 0.00 0.00 0.00 2.12
41 42 3.596046 TCCCCACCAAATTCCAACTATCT 59.404 43.478 0.00 0.00 0.00 1.98
45 46 5.009631 CCACCAAATTCCAACTATCTGTGA 58.990 41.667 0.00 0.00 0.00 3.58
47 48 4.695455 ACCAAATTCCAACTATCTGTGACG 59.305 41.667 0.00 0.00 0.00 4.35
50 51 0.535335 TCCAACTATCTGTGACGGGC 59.465 55.000 0.00 0.00 0.00 6.13
54 55 0.108138 ACTATCTGTGACGGGCTTGC 60.108 55.000 0.00 0.00 0.00 4.01
65 66 2.685999 GGCTTGCCCCTTGGATCT 59.314 61.111 0.00 0.00 0.00 2.75
67 68 0.179006 GGCTTGCCCCTTGGATCTAG 60.179 60.000 0.00 0.00 0.00 2.43
68 69 0.548510 GCTTGCCCCTTGGATCTAGT 59.451 55.000 0.00 0.00 0.00 2.57
76 77 4.860022 CCCCTTGGATCTAGTTCATTTGT 58.140 43.478 3.30 0.00 0.00 2.83
77 78 5.631481 GCCCCTTGGATCTAGTTCATTTGTA 60.631 44.000 3.30 0.00 0.00 2.41
80 81 7.420680 CCCCTTGGATCTAGTTCATTTGTAGAT 60.421 40.741 3.30 0.00 36.43 1.98
82 83 7.989741 CCTTGGATCTAGTTCATTTGTAGATGT 59.010 37.037 3.30 0.00 34.35 3.06
83 84 8.722480 TTGGATCTAGTTCATTTGTAGATGTG 57.278 34.615 3.30 0.00 34.35 3.21
91 92 6.652481 AGTTCATTTGTAGATGTGGTGAAGAG 59.348 38.462 0.00 0.00 0.00 2.85
94 95 6.211384 TCATTTGTAGATGTGGTGAAGAGAGA 59.789 38.462 0.00 0.00 0.00 3.10
101 102 3.095332 TGTGGTGAAGAGAGAGATGGAG 58.905 50.000 0.00 0.00 0.00 3.86
110 111 3.117701 AGAGAGAGATGGAGAATCGTGGA 60.118 47.826 0.00 0.00 40.54 4.02
115 116 3.099905 AGATGGAGAATCGTGGACAGAA 58.900 45.455 0.00 0.00 40.54 3.02
117 118 2.248248 TGGAGAATCGTGGACAGAACT 58.752 47.619 0.00 0.00 34.37 3.01
118 119 3.427573 TGGAGAATCGTGGACAGAACTA 58.572 45.455 0.00 0.00 34.37 2.24
119 120 3.192844 TGGAGAATCGTGGACAGAACTAC 59.807 47.826 0.00 0.00 34.37 2.73
122 123 0.815734 ATCGTGGACAGAACTACCGG 59.184 55.000 0.00 0.00 0.00 5.28
127 128 1.475280 TGGACAGAACTACCGGAATCG 59.525 52.381 9.46 0.00 0.00 3.34
137 138 2.885644 CGGAATCGGCGTCCACAG 60.886 66.667 15.68 0.00 34.56 3.66
150 151 2.109126 CCACAGCCGCCTAAGAAGC 61.109 63.158 0.00 0.00 0.00 3.86
151 152 1.375908 CACAGCCGCCTAAGAAGCA 60.376 57.895 0.00 0.00 0.00 3.91
155 156 0.830648 AGCCGCCTAAGAAGCATGTA 59.169 50.000 0.00 0.00 0.00 2.29
157 158 1.583054 CCGCCTAAGAAGCATGTACC 58.417 55.000 0.00 0.00 0.00 3.34
159 160 1.933853 CGCCTAAGAAGCATGTACCAC 59.066 52.381 0.00 0.00 0.00 4.16
160 161 2.289565 GCCTAAGAAGCATGTACCACC 58.710 52.381 0.00 0.00 0.00 4.61
164 165 0.036388 AGAAGCATGTACCACCACCG 60.036 55.000 0.00 0.00 0.00 4.94
165 166 1.002624 AAGCATGTACCACCACCGG 60.003 57.895 0.00 0.00 0.00 5.28
166 167 1.774894 AAGCATGTACCACCACCGGT 61.775 55.000 0.00 0.00 43.46 5.28
172 173 0.904394 GTACCACCACCGGTAGGGAA 60.904 60.000 21.35 8.66 42.23 3.97
174 175 1.298667 CCACCACCGGTAGGGAAAG 59.701 63.158 17.49 6.85 43.47 2.62
175 176 1.376812 CACCACCGGTAGGGAAAGC 60.377 63.158 17.49 0.00 43.47 3.51
177 178 1.221021 CCACCGGTAGGGAAAGCTC 59.779 63.158 6.87 0.00 43.47 4.09
179 180 1.229400 ACCGGTAGGGAAAGCTCCA 60.229 57.895 4.49 0.00 44.51 3.86
181 182 1.153349 CGGTAGGGAAAGCTCCAGC 60.153 63.158 0.00 0.00 44.51 4.85
182 183 1.899437 CGGTAGGGAAAGCTCCAGCA 61.899 60.000 0.48 0.00 44.51 4.41
183 184 0.393132 GGTAGGGAAAGCTCCAGCAC 60.393 60.000 0.48 0.00 44.51 4.40
184 185 0.393132 GTAGGGAAAGCTCCAGCACC 60.393 60.000 0.48 1.54 44.51 5.01
185 186 1.562672 TAGGGAAAGCTCCAGCACCC 61.563 60.000 15.98 15.98 44.51 4.61
186 187 2.747855 GGAAAGCTCCAGCACCCG 60.748 66.667 0.48 0.00 45.16 5.28
214 215 0.032813 AATCCTGCTCCACAATGGGG 60.033 55.000 0.00 0.00 42.32 4.96
242 243 3.357079 GCGGGAGGTGCACAACAG 61.357 66.667 20.43 9.59 0.00 3.16
243 244 2.425592 CGGGAGGTGCACAACAGA 59.574 61.111 20.43 0.00 0.00 3.41
246 247 0.886490 GGGAGGTGCACAACAGACAG 60.886 60.000 20.43 0.00 0.00 3.51
248 249 1.835483 GAGGTGCACAACAGACAGCG 61.835 60.000 20.43 0.00 36.92 5.18
249 250 1.887242 GGTGCACAACAGACAGCGA 60.887 57.895 20.43 0.00 0.00 4.93
250 251 1.276844 GTGCACAACAGACAGCGAC 59.723 57.895 13.17 0.00 0.00 5.19
251 252 2.237066 TGCACAACAGACAGCGACG 61.237 57.895 0.00 0.00 0.00 5.12
252 253 1.949133 GCACAACAGACAGCGACGA 60.949 57.895 0.00 0.00 0.00 4.20
253 254 1.487452 GCACAACAGACAGCGACGAA 61.487 55.000 0.00 0.00 0.00 3.85
254 255 1.139989 CACAACAGACAGCGACGAAT 58.860 50.000 0.00 0.00 0.00 3.34
255 256 1.125021 CACAACAGACAGCGACGAATC 59.875 52.381 0.00 0.00 0.00 2.52
259 260 0.456142 CAGACAGCGACGAATCCGAA 60.456 55.000 0.00 0.00 39.50 4.30
260 261 0.179161 AGACAGCGACGAATCCGAAG 60.179 55.000 0.00 0.00 39.50 3.79
263 264 2.508439 GCGACGAATCCGAAGCCA 60.508 61.111 0.00 0.00 39.50 4.75
269 270 0.958382 CGAATCCGAAGCCAAACCCA 60.958 55.000 0.00 0.00 38.22 4.51
270 271 1.253100 GAATCCGAAGCCAAACCCAA 58.747 50.000 0.00 0.00 0.00 4.12
275 276 1.852067 CGAAGCCAAACCCAACTCCG 61.852 60.000 0.00 0.00 0.00 4.63
276 277 0.536460 GAAGCCAAACCCAACTCCGA 60.536 55.000 0.00 0.00 0.00 4.55
277 278 0.112412 AAGCCAAACCCAACTCCGAT 59.888 50.000 0.00 0.00 0.00 4.18
279 280 0.243636 GCCAAACCCAACTCCGATTG 59.756 55.000 0.00 0.00 0.00 2.67
281 282 0.243636 CAAACCCAACTCCGATTGCC 59.756 55.000 0.00 0.00 0.00 4.52
297 298 4.729918 CCCCTGCACCTCAGCCAC 62.730 72.222 0.00 0.00 41.50 5.01
299 300 3.957586 CCTGCACCTCAGCCACCA 61.958 66.667 0.00 0.00 41.50 4.17
332 333 2.625617 GCCCCTGGATCCCAAATACAAA 60.626 50.000 9.90 0.00 30.80 2.83
335 336 4.387891 CCCCTGGATCCCAAATACAAAGAT 60.388 45.833 9.90 0.00 30.80 2.40
368 369 3.091545 CAATTGTAGTTGGCCTGGTCAT 58.908 45.455 0.00 0.00 0.00 3.06
421 422 1.938577 CTTCATCTGTGCTGGGAATCG 59.061 52.381 0.00 0.00 0.00 3.34
450 451 2.779742 TAATTGTGCGGCCTGGGCTT 62.780 55.000 18.81 7.03 41.60 4.35
461 462 0.754957 CCTGGGCTTGTTCACAACCA 60.755 55.000 11.18 7.41 32.97 3.67
467 468 1.135141 GCTTGTTCACAACCAACAGCA 60.135 47.619 0.00 0.00 35.22 4.41
518 519 3.953612 TGGGCTTTTATCATGTGGATGTC 59.046 43.478 0.00 0.00 36.72 3.06
532 533 0.818296 GATGTCCCTGTAGCGACTGT 59.182 55.000 0.00 0.00 0.00 3.55
534 535 0.538746 TGTCCCTGTAGCGACTGTGA 60.539 55.000 0.00 0.00 0.00 3.58
578 579 0.663153 GTGCTGTGTTGAAGGTGGTC 59.337 55.000 0.00 0.00 0.00 4.02
626 627 2.057137 TGGTGCAGCTAAATGGGATC 57.943 50.000 18.08 0.00 0.00 3.36
650 651 2.660572 TGCAAAACTAAAGAGTGGCCA 58.339 42.857 0.00 0.00 35.52 5.36
668 669 2.103771 GCCATGGCAGATCAGAGAGTTA 59.896 50.000 32.08 0.00 41.49 2.24
673 674 3.295973 GGCAGATCAGAGAGTTAGAGGT 58.704 50.000 0.00 0.00 0.00 3.85
715 717 1.284785 TCCCCATGGAAGAATGTGGAC 59.715 52.381 15.22 0.00 37.86 4.02
717 719 1.382522 CCATGGAAGAATGTGGACGG 58.617 55.000 5.56 0.00 33.53 4.79
742 744 7.872483 GGTCTAATTGAATTCCTTGCTTTTGAA 59.128 33.333 2.27 0.00 0.00 2.69
743 745 9.428097 GTCTAATTGAATTCCTTGCTTTTGAAT 57.572 29.630 2.27 0.00 0.00 2.57
757 759 7.953005 TGCTTTTGAATTACCTATTGATGGA 57.047 32.000 0.00 0.00 0.00 3.41
808 810 6.297582 AGGAATGCTAGATGAATTTGGAGAG 58.702 40.000 0.00 0.00 0.00 3.20
814 816 6.765036 TGCTAGATGAATTTGGAGAGCTTAAG 59.235 38.462 0.00 0.00 0.00 1.85
829 831 2.716217 CTTAAGGAAGCCTGGGTTCAG 58.284 52.381 32.48 20.63 41.18 3.02
893 895 2.790433 CCCAAGTAGCAGGCTGTTTTA 58.210 47.619 17.16 4.00 0.00 1.52
918 928 3.392616 AGGATGTGGACTGGAATGGTATC 59.607 47.826 0.00 0.00 0.00 2.24
961 971 5.863397 ACAATTTCGATAAAAGTGGCATGTG 59.137 36.000 0.00 0.00 45.02 3.21
969 979 1.426251 AAGTGGCATGTGGAGACCCA 61.426 55.000 0.00 0.00 40.95 4.51
987 997 3.457749 ACCCAAGCAAAATTCCCTTTGAA 59.542 39.130 0.39 0.00 38.35 2.69
997 1007 5.966742 AATTCCCTTTGAAAGACTAGTGC 57.033 39.130 6.49 0.00 36.33 4.40
1012 1022 6.529220 AGACTAGTGCAAATGAAGAAGAAGT 58.471 36.000 0.00 0.00 0.00 3.01
1029 1039 7.454225 AGAAGAAGTTGTACCTGCTATTCTTT 58.546 34.615 0.00 0.00 36.08 2.52
1063 1073 5.003804 GCTTTGAACAAGTTGGAGAGGATA 58.996 41.667 7.96 0.00 0.00 2.59
1096 1106 5.224821 TGATGATGACCCTGATCAAGATC 57.775 43.478 0.00 3.12 33.59 2.75
1097 1107 4.657039 TGATGATGACCCTGATCAAGATCA 59.343 41.667 11.87 11.87 44.83 2.92
1098 1108 4.412796 TGATGACCCTGATCAAGATCAC 57.587 45.455 8.61 0.81 42.42 3.06
1099 1109 3.776417 TGATGACCCTGATCAAGATCACA 59.224 43.478 8.61 6.18 42.42 3.58
1100 1110 3.616956 TGACCCTGATCAAGATCACAC 57.383 47.619 8.61 2.52 42.42 3.82
1101 1111 3.176411 TGACCCTGATCAAGATCACACT 58.824 45.455 8.61 0.00 42.42 3.55
1102 1112 3.055602 TGACCCTGATCAAGATCACACTG 60.056 47.826 8.61 0.16 42.42 3.66
1103 1113 3.176411 ACCCTGATCAAGATCACACTGA 58.824 45.455 8.61 0.00 42.42 3.41
1104 1114 3.584406 ACCCTGATCAAGATCACACTGAA 59.416 43.478 8.61 0.00 42.42 3.02
1105 1115 4.190001 CCCTGATCAAGATCACACTGAAG 58.810 47.826 8.61 0.00 42.42 3.02
1106 1116 4.190001 CCTGATCAAGATCACACTGAAGG 58.810 47.826 8.61 3.74 42.42 3.46
1107 1117 4.190001 CTGATCAAGATCACACTGAAGGG 58.810 47.826 8.61 0.00 42.42 3.95
1108 1118 3.054875 TGATCAAGATCACACTGAAGGGG 60.055 47.826 8.61 0.00 42.42 4.79
1109 1119 2.619931 TCAAGATCACACTGAAGGGGA 58.380 47.619 0.00 0.00 0.00 4.81
1110 1120 2.978978 TCAAGATCACACTGAAGGGGAA 59.021 45.455 0.00 0.00 0.00 3.97
1111 1121 3.077359 CAAGATCACACTGAAGGGGAAC 58.923 50.000 0.00 0.00 0.00 3.62
1112 1122 2.338809 AGATCACACTGAAGGGGAACA 58.661 47.619 0.00 0.00 0.00 3.18
1113 1123 2.915604 AGATCACACTGAAGGGGAACAT 59.084 45.455 0.00 0.00 0.00 2.71
1114 1124 4.104086 AGATCACACTGAAGGGGAACATA 58.896 43.478 0.00 0.00 0.00 2.29
1115 1125 4.536090 AGATCACACTGAAGGGGAACATAA 59.464 41.667 0.00 0.00 0.00 1.90
1116 1126 4.286297 TCACACTGAAGGGGAACATAAG 57.714 45.455 0.00 0.00 0.00 1.73
1117 1127 3.009033 TCACACTGAAGGGGAACATAAGG 59.991 47.826 0.00 0.00 0.00 2.69
1118 1128 3.009033 CACACTGAAGGGGAACATAAGGA 59.991 47.826 0.00 0.00 0.00 3.36
1119 1129 3.852578 ACACTGAAGGGGAACATAAGGAT 59.147 43.478 0.00 0.00 0.00 3.24
1120 1130 4.202441 CACTGAAGGGGAACATAAGGATG 58.798 47.826 0.00 0.00 39.16 3.51
1121 1131 4.080356 CACTGAAGGGGAACATAAGGATGA 60.080 45.833 0.00 0.00 36.48 2.92
1122 1132 4.164988 ACTGAAGGGGAACATAAGGATGAG 59.835 45.833 0.00 0.00 36.48 2.90
1123 1133 4.111577 TGAAGGGGAACATAAGGATGAGT 58.888 43.478 0.00 0.00 36.48 3.41
1124 1134 4.540099 TGAAGGGGAACATAAGGATGAGTT 59.460 41.667 0.00 0.00 36.48 3.01
1125 1135 4.510167 AGGGGAACATAAGGATGAGTTG 57.490 45.455 0.00 0.00 36.48 3.16
1126 1136 3.203040 AGGGGAACATAAGGATGAGTTGG 59.797 47.826 0.00 0.00 36.48 3.77
1127 1137 3.555966 GGGAACATAAGGATGAGTTGGG 58.444 50.000 0.00 0.00 36.48 4.12
1128 1138 2.952310 GGAACATAAGGATGAGTTGGGC 59.048 50.000 0.00 0.00 36.48 5.36
1129 1139 3.620488 GAACATAAGGATGAGTTGGGCA 58.380 45.455 0.00 0.00 36.48 5.36
1130 1140 3.287867 ACATAAGGATGAGTTGGGCAG 57.712 47.619 0.00 0.00 36.48 4.85
1131 1141 2.846206 ACATAAGGATGAGTTGGGCAGA 59.154 45.455 0.00 0.00 36.48 4.26
1170 1213 8.389979 AGGATAACATGTATGATGATGGAGAT 57.610 34.615 0.00 0.00 0.00 2.75
1176 1219 5.556006 TGTATGATGATGGAGATGAAGCA 57.444 39.130 0.00 0.00 0.00 3.91
1197 1240 0.251354 TTGATGAGCTGGACAGAGCC 59.749 55.000 3.00 0.00 40.08 4.70
1216 1259 2.289010 GCCAACTTCCCATCCAAACAAG 60.289 50.000 0.00 0.00 0.00 3.16
1219 1262 2.242043 ACTTCCCATCCAAACAAGCTG 58.758 47.619 0.00 0.00 0.00 4.24
1220 1263 2.158475 ACTTCCCATCCAAACAAGCTGA 60.158 45.455 0.00 0.00 0.00 4.26
1222 1265 0.890683 CCCATCCAAACAAGCTGACC 59.109 55.000 0.00 0.00 0.00 4.02
1224 1267 1.548582 CCATCCAAACAAGCTGACCCT 60.549 52.381 0.00 0.00 0.00 4.34
1231 1274 2.736670 ACAAGCTGACCCTTCAAGTT 57.263 45.000 0.00 0.00 0.00 2.66
1233 1276 1.532868 CAAGCTGACCCTTCAAGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
1238 1281 2.802816 CTGACCCTTCAAGTTCGAACAG 59.197 50.000 28.78 20.31 0.00 3.16
1240 1283 3.071023 TGACCCTTCAAGTTCGAACAGAT 59.929 43.478 28.78 12.65 0.00 2.90
1299 1342 6.837048 TCCATCCAGTTTTCATGAATGATGAT 59.163 34.615 21.46 13.61 40.92 2.45
1311 1354 4.266714 TGAATGATGATGCACATGACAGT 58.733 39.130 0.00 0.26 39.56 3.55
1315 1358 4.800784 TGATGATGCACATGACAGTTTTG 58.199 39.130 0.00 0.00 39.56 2.44
1320 1363 2.757314 TGCACATGACAGTTTTGTGGAA 59.243 40.909 15.07 0.00 38.51 3.53
1326 1369 6.757947 CACATGACAGTTTTGTGGAAGAAATT 59.242 34.615 0.00 0.00 37.76 1.82
1329 1372 7.038154 TGACAGTTTTGTGGAAGAAATTAGG 57.962 36.000 0.00 0.00 37.76 2.69
1332 1375 8.250143 ACAGTTTTGTGGAAGAAATTAGGAAT 57.750 30.769 0.00 0.00 35.83 3.01
1338 1381 7.027874 TGTGGAAGAAATTAGGAATAGTGGT 57.972 36.000 0.00 0.00 0.00 4.16
1341 1384 7.065923 GTGGAAGAAATTAGGAATAGTGGTCAC 59.934 40.741 0.00 0.00 0.00 3.67
1343 1386 7.610305 GGAAGAAATTAGGAATAGTGGTCACAA 59.390 37.037 3.82 0.00 0.00 3.33
1347 1390 8.934023 AAATTAGGAATAGTGGTCACAAAGAA 57.066 30.769 3.82 0.00 0.00 2.52
1350 1393 5.316987 AGGAATAGTGGTCACAAAGAAAGG 58.683 41.667 3.82 0.00 0.00 3.11
1355 1398 4.455606 AGTGGTCACAAAGAAAGGAAGAG 58.544 43.478 3.82 0.00 0.00 2.85
1358 1401 4.408921 TGGTCACAAAGAAAGGAAGAGAGA 59.591 41.667 0.00 0.00 0.00 3.10
1359 1402 5.104527 TGGTCACAAAGAAAGGAAGAGAGAA 60.105 40.000 0.00 0.00 0.00 2.87
1367 1410 6.933514 AGAAAGGAAGAGAGAAGAAGATGT 57.066 37.500 0.00 0.00 0.00 3.06
1369 1412 5.419239 AAGGAAGAGAGAAGAAGATGTGG 57.581 43.478 0.00 0.00 0.00 4.17
1377 1420 4.019501 AGAGAAGAAGATGTGGCTGTGATT 60.020 41.667 0.00 0.00 0.00 2.57
1386 1429 2.849943 TGTGGCTGTGATTAATACCCCT 59.150 45.455 0.00 0.00 0.00 4.79
1395 1438 6.354130 TGTGATTAATACCCCTTGCTCTTAC 58.646 40.000 0.00 0.00 0.00 2.34
1413 1456 5.784177 TCTTACAAGATGTTGACTGAGGAC 58.216 41.667 9.96 0.00 37.10 3.85
1415 1458 4.000331 ACAAGATGTTGACTGAGGACAG 58.000 45.455 9.96 0.00 41.99 3.51
1417 1460 2.255406 AGATGTTGACTGAGGACAGCT 58.745 47.619 0.00 0.00 46.95 4.24
1418 1461 2.233431 AGATGTTGACTGAGGACAGCTC 59.767 50.000 0.00 0.00 46.95 4.09
1422 1465 1.244697 TGACTGAGGACAGCTCGGAC 61.245 60.000 0.00 0.00 46.95 4.79
1455 1502 4.046938 TGTTCATCTCGAATACTGCTCC 57.953 45.455 0.00 0.00 35.63 4.70
1459 1506 3.643320 TCATCTCGAATACTGCTCCCAAT 59.357 43.478 0.00 0.00 0.00 3.16
1527 1574 4.473444 ACATGGAAACTGAACTCCAATGT 58.527 39.130 0.00 0.00 44.77 2.71
1539 1586 5.763204 TGAACTCCAATGTTTACCTGAAGAC 59.237 40.000 0.00 0.00 0.00 3.01
1542 1589 7.074653 ACTCCAATGTTTACCTGAAGACTTA 57.925 36.000 0.00 0.00 0.00 2.24
1551 1598 2.436173 ACCTGAAGACTTAGCTATGGCC 59.564 50.000 8.82 0.00 39.73 5.36
1557 1604 2.107204 AGACTTAGCTATGGCCATTGGG 59.893 50.000 26.37 15.39 39.73 4.12
1560 1607 0.396435 TAGCTATGGCCATTGGGTCG 59.604 55.000 26.37 6.98 43.76 4.79
1568 1615 0.894835 GCCATTGGGTCGGTGAAAAT 59.105 50.000 4.53 0.00 36.17 1.82
1572 1619 4.207165 CCATTGGGTCGGTGAAAATATCT 58.793 43.478 0.00 0.00 0.00 1.98
1620 1667 7.360269 GCTGAATCTGAGAAGAAGAAGAAACTG 60.360 40.741 0.00 0.00 0.00 3.16
1631 1678 8.655651 AAGAAGAAGAAACTGAACACTAAGAG 57.344 34.615 0.00 0.00 0.00 2.85
1632 1679 8.012957 AGAAGAAGAAACTGAACACTAAGAGA 57.987 34.615 0.00 0.00 0.00 3.10
1635 1682 9.620259 AAGAAGAAACTGAACACTAAGAGAAAT 57.380 29.630 0.00 0.00 0.00 2.17
1638 1685 8.834749 AGAAACTGAACACTAAGAGAAATACC 57.165 34.615 0.00 0.00 0.00 2.73
1641 1688 5.142061 TGAACACTAAGAGAAATACCGCA 57.858 39.130 0.00 0.00 0.00 5.69
1668 1715 0.533491 CCGTCCCGATAAACAGACCA 59.467 55.000 0.00 0.00 0.00 4.02
1692 1739 6.923199 AAAACCAGAGATCATGGAAATGTT 57.077 33.333 20.48 4.50 40.51 2.71
1730 1778 4.848357 CCCAAGCCTATCTTCTGAAGAAA 58.152 43.478 22.68 2.75 41.63 2.52
1745 1793 4.407365 TGAAGAAAAACCTGGAGATTCCC 58.593 43.478 0.00 0.00 35.03 3.97
1751 1799 1.290134 ACCTGGAGATTCCCACTTCC 58.710 55.000 0.00 0.00 35.03 3.46
1763 1811 4.094830 TCCCACTTCCTTCAAAGGTAAC 57.905 45.455 8.60 0.00 46.54 2.50
1782 1830 5.163884 GGTAACTCTTTTGCTAACACGGATC 60.164 44.000 0.00 0.00 0.00 3.36
1783 1831 4.273148 ACTCTTTTGCTAACACGGATCT 57.727 40.909 0.00 0.00 0.00 2.75
1787 1835 6.879458 ACTCTTTTGCTAACACGGATCTTAAT 59.121 34.615 0.00 0.00 0.00 1.40
1788 1836 8.038944 ACTCTTTTGCTAACACGGATCTTAATA 58.961 33.333 0.00 0.00 0.00 0.98
1789 1837 8.193250 TCTTTTGCTAACACGGATCTTAATAC 57.807 34.615 0.00 0.00 0.00 1.89
1790 1838 6.913873 TTTGCTAACACGGATCTTAATACC 57.086 37.500 0.00 0.00 0.00 2.73
1799 1847 4.065789 CGGATCTTAATACCCTTGCTTCC 58.934 47.826 0.00 0.00 0.00 3.46
1838 1886 9.539825 GTAGATATCTGCATTGGTGATAATAGG 57.460 37.037 15.79 0.00 0.00 2.57
1839 1887 7.571919 AGATATCTGCATTGGTGATAATAGGG 58.428 38.462 3.89 0.00 0.00 3.53
1850 1898 5.059833 GGTGATAATAGGGAAGAGTGCAAG 58.940 45.833 0.00 0.00 0.00 4.01
1865 1913 6.471146 AGAGTGCAAGGATATCATTATGGAC 58.529 40.000 1.67 4.09 0.00 4.02
1866 1914 6.043590 AGAGTGCAAGGATATCATTATGGACA 59.956 38.462 13.75 2.16 32.44 4.02
1879 1927 8.974292 ATCATTATGGACATAGTTACTAGGGT 57.026 34.615 8.90 4.31 0.00 4.34
1931 1979 7.831691 TTTGAATCCTGAGATTGTTTTACCA 57.168 32.000 0.00 0.00 42.93 3.25
1932 1980 7.452880 TTGAATCCTGAGATTGTTTTACCAG 57.547 36.000 0.00 0.00 42.93 4.00
1933 1981 6.542821 TGAATCCTGAGATTGTTTTACCAGT 58.457 36.000 0.00 0.00 42.93 4.00
1934 1982 7.004086 TGAATCCTGAGATTGTTTTACCAGTT 58.996 34.615 0.00 0.00 42.93 3.16
1937 1985 6.361433 TCCTGAGATTGTTTTACCAGTTTCA 58.639 36.000 0.00 0.00 0.00 2.69
1939 1987 7.174946 TCCTGAGATTGTTTTACCAGTTTCATC 59.825 37.037 0.00 0.00 0.00 2.92
1943 1991 8.641498 AGATTGTTTTACCAGTTTCATCAGAT 57.359 30.769 0.00 0.00 0.00 2.90
1944 1992 8.517878 AGATTGTTTTACCAGTTTCATCAGATG 58.482 33.333 3.71 3.71 0.00 2.90
1950 1998 9.513906 TTTTACCAGTTTCATCAGATGTTGATA 57.486 29.630 10.34 0.00 44.76 2.15
1953 2001 8.668510 ACCAGTTTCATCAGATGTTGATATAC 57.331 34.615 10.34 0.00 44.76 1.47
1955 2003 9.281371 CCAGTTTCATCAGATGTTGATATACAT 57.719 33.333 10.34 0.00 44.76 2.29
1969 2017 7.787904 TGTTGATATACATAACTGTACCTCCCT 59.212 37.037 0.00 0.00 40.57 4.20
1971 2019 8.190326 TGATATACATAACTGTACCTCCCTTG 57.810 38.462 0.00 0.00 40.57 3.61
1975 2023 2.271944 AACTGTACCTCCCTTGTTGC 57.728 50.000 0.00 0.00 0.00 4.17
1976 2024 1.136828 ACTGTACCTCCCTTGTTGCA 58.863 50.000 0.00 0.00 0.00 4.08
1977 2025 1.072331 ACTGTACCTCCCTTGTTGCAG 59.928 52.381 0.00 0.00 0.00 4.41
1979 2027 1.771854 TGTACCTCCCTTGTTGCAGAA 59.228 47.619 0.00 0.00 0.00 3.02
1987 2035 2.029918 CCCTTGTTGCAGAAAAGGCTAC 60.030 50.000 15.27 0.00 39.36 3.58
1993 2041 4.283467 TGTTGCAGAAAAGGCTACTCTAGA 59.717 41.667 0.00 0.00 37.77 2.43
1996 2044 4.959210 TGCAGAAAAGGCTACTCTAGATCT 59.041 41.667 0.00 0.00 0.00 2.75
2001 2049 7.286775 CAGAAAAGGCTACTCTAGATCTTAGGT 59.713 40.741 0.00 0.00 0.00 3.08
2017 2065 2.044946 GTAAGGGGGCACTGCTGG 60.045 66.667 0.00 0.00 0.00 4.85
2030 2078 1.126488 CTGCTGGCCTGGATCTAGAA 58.874 55.000 12.06 0.00 0.00 2.10
2036 2084 0.109532 GCCTGGATCTAGAAAGCCCC 59.890 60.000 7.81 0.00 0.00 5.80
2039 2087 0.980754 TGGATCTAGAAAGCCCCGCA 60.981 55.000 0.00 0.00 0.00 5.69
2040 2088 0.250081 GGATCTAGAAAGCCCCGCAG 60.250 60.000 0.00 0.00 0.00 5.18
2054 2102 3.086282 CCCCGCAGTTAATACCAAAAGT 58.914 45.455 0.00 0.00 0.00 2.66
2055 2103 3.508402 CCCCGCAGTTAATACCAAAAGTT 59.492 43.478 0.00 0.00 0.00 2.66
2101 2149 6.605594 CCTTTTAGGGTTAAATGATAGGTGCA 59.394 38.462 0.00 0.00 0.00 4.57
2110 2158 7.821846 GGTTAAATGATAGGTGCATTTTGGAAA 59.178 33.333 0.00 0.00 41.71 3.13
2111 2159 8.872845 GTTAAATGATAGGTGCATTTTGGAAAG 58.127 33.333 0.00 0.00 41.71 2.62
2120 2168 5.222631 GTGCATTTTGGAAAGTTAGAGGTG 58.777 41.667 0.00 0.00 0.00 4.00
2122 2170 5.221224 TGCATTTTGGAAAGTTAGAGGTGTG 60.221 40.000 0.00 0.00 0.00 3.82
2138 2186 2.657143 GTGTGGGACAACCTGGTAAAA 58.343 47.619 0.00 0.00 44.16 1.52
2140 2188 3.639561 GTGTGGGACAACCTGGTAAAATT 59.360 43.478 0.00 0.00 44.16 1.82
2149 2197 3.844640 ACCTGGTAAAATTCAGTGCCTT 58.155 40.909 0.00 0.00 0.00 4.35
2152 2200 2.896685 TGGTAAAATTCAGTGCCTTGGG 59.103 45.455 0.00 0.00 0.00 4.12
2163 2211 1.886542 GTGCCTTGGGGACTTTGTTAG 59.113 52.381 0.99 0.00 40.95 2.34
2174 2222 8.746052 TGGGGACTTTGTTAGTAATAATCATG 57.254 34.615 0.00 0.00 37.17 3.07
2194 2242 4.712122 TGTTGACTTTGTGGGTTTCTTC 57.288 40.909 0.00 0.00 0.00 2.87
2243 2291 7.959658 AATGGTTTGTTGAATATGATCTCCA 57.040 32.000 0.00 0.00 0.00 3.86
2248 2296 8.398665 GGTTTGTTGAATATGATCTCCAGTAAC 58.601 37.037 0.00 0.00 0.00 2.50
2272 2320 6.127394 ACAATGATTTTACATGGCATGTGCTA 60.127 34.615 36.61 23.11 44.60 3.49
2321 2369 5.253330 TCCTTGTGGGTCTTAACAATGATC 58.747 41.667 0.00 0.00 35.82 2.92
2323 2371 5.711976 CCTTGTGGGTCTTAACAATGATCTT 59.288 40.000 0.00 0.00 35.82 2.40
2350 2398 9.761504 TTTGATATCATTTGCTTTTCTCACAAA 57.238 25.926 6.17 0.00 37.66 2.83
2383 2431 9.309516 TGTGTTTCTGTTACTGTTAAGAGTAAG 57.690 33.333 21.84 13.38 38.75 2.34
2396 2444 8.378172 TGTTAAGAGTAAGAGTGATGGTTTTG 57.622 34.615 0.00 0.00 0.00 2.44
2405 2453 3.989817 GAGTGATGGTTTTGTTTGGCATC 59.010 43.478 0.00 0.00 0.00 3.91
2410 2458 2.158986 TGGTTTTGTTTGGCATCTGGTG 60.159 45.455 0.00 0.00 0.00 4.17
2419 2467 1.800681 GCATCTGGTGGCCGTTTAC 59.199 57.895 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.994399 TGGTGGGGATAGGGTCAAAT 58.006 50.000 0.00 0.00 0.00 2.32
14 15 1.573376 TGGAATTTGGTGGGGATAGGG 59.427 52.381 0.00 0.00 0.00 3.53
17 18 5.435041 AGATAGTTGGAATTTGGTGGGGATA 59.565 40.000 0.00 0.00 0.00 2.59
18 19 4.232820 AGATAGTTGGAATTTGGTGGGGAT 59.767 41.667 0.00 0.00 0.00 3.85
20 21 3.701040 CAGATAGTTGGAATTTGGTGGGG 59.299 47.826 0.00 0.00 0.00 4.96
29 30 2.420129 GCCCGTCACAGATAGTTGGAAT 60.420 50.000 0.00 0.00 0.00 3.01
32 33 0.537188 AGCCCGTCACAGATAGTTGG 59.463 55.000 0.00 0.00 0.00 3.77
35 36 0.108138 GCAAGCCCGTCACAGATAGT 60.108 55.000 0.00 0.00 0.00 2.12
36 37 0.811616 GGCAAGCCCGTCACAGATAG 60.812 60.000 0.00 0.00 0.00 2.08
50 51 2.239654 TGAACTAGATCCAAGGGGCAAG 59.760 50.000 0.00 0.00 0.00 4.01
54 55 4.860022 ACAAATGAACTAGATCCAAGGGG 58.140 43.478 0.00 0.00 0.00 4.79
58 59 7.770433 CCACATCTACAAATGAACTAGATCCAA 59.230 37.037 0.00 0.00 0.00 3.53
59 60 7.092891 ACCACATCTACAAATGAACTAGATCCA 60.093 37.037 0.00 0.00 0.00 3.41
65 66 7.676004 TCTTCACCACATCTACAAATGAACTA 58.324 34.615 0.00 0.00 0.00 2.24
67 68 6.650807 TCTCTTCACCACATCTACAAATGAAC 59.349 38.462 0.00 0.00 0.00 3.18
68 69 6.768483 TCTCTTCACCACATCTACAAATGAA 58.232 36.000 0.00 0.00 0.00 2.57
76 77 4.892345 CCATCTCTCTCTTCACCACATCTA 59.108 45.833 0.00 0.00 0.00 1.98
77 78 3.705579 CCATCTCTCTCTTCACCACATCT 59.294 47.826 0.00 0.00 0.00 2.90
80 81 3.095332 CTCCATCTCTCTCTTCACCACA 58.905 50.000 0.00 0.00 0.00 4.17
82 83 3.746792 TCTCCATCTCTCTCTTCACCA 57.253 47.619 0.00 0.00 0.00 4.17
83 84 4.261572 CGATTCTCCATCTCTCTCTTCACC 60.262 50.000 0.00 0.00 0.00 4.02
91 92 2.690497 TGTCCACGATTCTCCATCTCTC 59.310 50.000 0.00 0.00 0.00 3.20
94 95 2.739943 TCTGTCCACGATTCTCCATCT 58.260 47.619 0.00 0.00 0.00 2.90
101 102 2.527100 CGGTAGTTCTGTCCACGATTC 58.473 52.381 0.00 0.00 0.00 2.52
122 123 3.195698 GGCTGTGGACGCCGATTC 61.196 66.667 0.00 0.00 37.87 2.52
134 135 0.745845 CATGCTTCTTAGGCGGCTGT 60.746 55.000 23.55 0.00 0.00 4.40
136 137 0.830648 TACATGCTTCTTAGGCGGCT 59.169 50.000 18.33 18.33 0.00 5.52
137 138 0.938008 GTACATGCTTCTTAGGCGGC 59.062 55.000 0.00 0.00 0.00 6.53
140 141 2.289565 GGTGGTACATGCTTCTTAGGC 58.710 52.381 0.00 0.00 44.52 3.93
141 142 3.270877 GTGGTGGTACATGCTTCTTAGG 58.729 50.000 0.00 0.00 44.52 2.69
143 144 2.354303 CGGTGGTGGTACATGCTTCTTA 60.354 50.000 0.00 0.00 44.52 2.10
150 151 0.177141 CCTACCGGTGGTGGTACATG 59.823 60.000 19.93 0.00 44.52 3.21
151 152 0.979187 CCCTACCGGTGGTGGTACAT 60.979 60.000 19.93 0.00 44.52 2.29
155 156 1.461849 TTTCCCTACCGGTGGTGGT 60.462 57.895 19.93 0.00 46.26 4.16
157 158 1.376812 GCTTTCCCTACCGGTGGTG 60.377 63.158 19.93 5.49 36.19 4.17
159 160 1.221021 GAGCTTTCCCTACCGGTGG 59.779 63.158 19.93 15.68 0.00 4.61
160 161 1.221021 GGAGCTTTCCCTACCGGTG 59.779 63.158 19.93 7.24 0.00 4.94
164 165 0.393132 GTGCTGGAGCTTTCCCTACC 60.393 60.000 0.00 0.00 42.66 3.18
165 166 0.393132 GGTGCTGGAGCTTTCCCTAC 60.393 60.000 0.00 0.00 42.66 3.18
166 167 1.562672 GGGTGCTGGAGCTTTCCCTA 61.563 60.000 15.07 0.00 40.75 3.53
182 183 2.676471 GGATTTGCCACAGCGGGT 60.676 61.111 0.00 0.00 44.31 5.28
183 184 2.361610 AGGATTTGCCACAGCGGG 60.362 61.111 0.00 0.00 44.31 6.13
184 185 2.879907 CAGGATTTGCCACAGCGG 59.120 61.111 0.00 0.00 44.31 5.52
202 203 1.207488 TCTGGTCCCCCATTGTGGAG 61.207 60.000 0.00 0.00 40.96 3.86
205 206 1.000896 GGTCTGGTCCCCCATTGTG 60.001 63.158 0.00 0.00 40.90 3.33
224 225 4.947147 TGTTGTGCACCTCCCGCC 62.947 66.667 15.69 0.00 0.00 6.13
227 228 0.886490 CTGTCTGTTGTGCACCTCCC 60.886 60.000 15.69 0.00 0.00 4.30
229 230 1.835483 CGCTGTCTGTTGTGCACCTC 61.835 60.000 15.69 7.90 0.00 3.85
230 231 1.889105 CGCTGTCTGTTGTGCACCT 60.889 57.895 15.69 0.00 0.00 4.00
235 236 1.125021 GATTCGTCGCTGTCTGTTGTG 59.875 52.381 0.00 0.00 0.00 3.33
236 237 1.419374 GATTCGTCGCTGTCTGTTGT 58.581 50.000 0.00 0.00 0.00 3.32
237 238 0.716108 GGATTCGTCGCTGTCTGTTG 59.284 55.000 0.00 0.00 0.00 3.33
242 243 1.743855 GCTTCGGATTCGTCGCTGTC 61.744 60.000 0.00 0.00 37.69 3.51
243 244 1.805945 GCTTCGGATTCGTCGCTGT 60.806 57.895 0.00 0.00 37.69 4.40
246 247 1.632046 TTTGGCTTCGGATTCGTCGC 61.632 55.000 0.00 0.00 37.69 5.19
248 249 0.446616 GGTTTGGCTTCGGATTCGTC 59.553 55.000 0.00 0.00 37.69 4.20
249 250 0.958876 GGGTTTGGCTTCGGATTCGT 60.959 55.000 0.00 0.00 37.69 3.85
250 251 0.958382 TGGGTTTGGCTTCGGATTCG 60.958 55.000 0.00 0.00 37.82 3.34
251 252 1.067846 GTTGGGTTTGGCTTCGGATTC 60.068 52.381 0.00 0.00 0.00 2.52
252 253 0.966179 GTTGGGTTTGGCTTCGGATT 59.034 50.000 0.00 0.00 0.00 3.01
253 254 0.112412 AGTTGGGTTTGGCTTCGGAT 59.888 50.000 0.00 0.00 0.00 4.18
254 255 0.536460 GAGTTGGGTTTGGCTTCGGA 60.536 55.000 0.00 0.00 0.00 4.55
255 256 1.524008 GGAGTTGGGTTTGGCTTCGG 61.524 60.000 0.00 0.00 0.00 4.30
259 260 0.112412 AATCGGAGTTGGGTTTGGCT 59.888 50.000 0.00 0.00 0.00 4.75
260 261 0.243636 CAATCGGAGTTGGGTTTGGC 59.756 55.000 0.00 0.00 0.00 4.52
263 264 0.898326 GGGCAATCGGAGTTGGGTTT 60.898 55.000 0.00 0.00 0.00 3.27
269 270 2.044946 GCAGGGGCAATCGGAGTT 60.045 61.111 0.00 0.00 40.72 3.01
281 282 4.729918 GGTGGCTGAGGTGCAGGG 62.730 72.222 0.00 0.00 45.03 4.45
287 288 2.205462 AGAGGTGGTGGCTGAGGT 59.795 61.111 0.00 0.00 0.00 3.85
299 300 1.613630 CAGGGGCTGTACCAGAGGT 60.614 63.158 0.00 0.00 42.05 3.85
332 333 8.671921 CAACTACAATTGAAGCAAGTCATATCT 58.328 33.333 13.59 0.00 0.00 1.98
335 336 6.349280 GCCAACTACAATTGAAGCAAGTCATA 60.349 38.462 13.59 0.00 0.00 2.15
368 369 4.382901 GGCTCAATGCAATTCCCAACATAA 60.383 41.667 0.00 0.00 45.15 1.90
421 422 4.041723 GGCCGCACAATTATTCACATTAC 58.958 43.478 0.00 0.00 0.00 1.89
450 451 1.889170 TGTTGCTGTTGGTTGTGAACA 59.111 42.857 0.00 0.00 0.00 3.18
453 454 3.550820 AGTATGTTGCTGTTGGTTGTGA 58.449 40.909 0.00 0.00 0.00 3.58
461 462 4.023193 GCACTACCAAAGTATGTTGCTGTT 60.023 41.667 0.00 0.00 35.76 3.16
467 468 3.753272 CAGCTGCACTACCAAAGTATGTT 59.247 43.478 0.00 0.00 35.76 2.71
492 493 3.266772 TCCACATGATAAAAGCCCAGACT 59.733 43.478 0.00 0.00 0.00 3.24
494 495 4.209538 CATCCACATGATAAAAGCCCAGA 58.790 43.478 0.00 0.00 30.57 3.86
518 519 1.402259 CTAGTCACAGTCGCTACAGGG 59.598 57.143 0.00 0.00 0.00 4.45
605 606 2.300956 TCCCATTTAGCTGCACCAAA 57.699 45.000 1.02 0.00 0.00 3.28
606 607 2.025037 AGATCCCATTTAGCTGCACCAA 60.025 45.455 1.02 0.00 0.00 3.67
626 627 4.507756 GGCCACTCTTTAGTTTTGCAAAAG 59.492 41.667 24.46 12.72 31.97 2.27
650 651 3.896888 CCTCTAACTCTCTGATCTGCCAT 59.103 47.826 0.00 0.00 0.00 4.40
680 682 4.080751 CCATGGGGAAAATCTCAGCAAATT 60.081 41.667 2.85 0.00 35.59 1.82
715 717 5.567138 AAGCAAGGAATTCAATTAGACCG 57.433 39.130 7.93 0.00 0.00 4.79
717 719 8.816640 TTCAAAAGCAAGGAATTCAATTAGAC 57.183 30.769 7.93 0.00 0.00 2.59
743 745 9.667107 CTTAACAGAAACTCCATCAATAGGTAA 57.333 33.333 0.00 0.00 0.00 2.85
757 759 7.287696 ACCCATTCACAAATCTTAACAGAAACT 59.712 33.333 0.00 0.00 30.76 2.66
814 816 1.004745 TCAATCTGAACCCAGGCTTCC 59.995 52.381 0.00 0.00 40.76 3.46
829 831 5.370679 CATTTTGGGGGAATTCCATCAATC 58.629 41.667 25.67 7.20 37.91 2.67
886 888 3.438087 CAGTCCACATCCTGCTAAAACAG 59.562 47.826 0.00 0.00 37.42 3.16
893 895 1.064906 CATTCCAGTCCACATCCTGCT 60.065 52.381 0.00 0.00 0.00 4.24
942 952 3.680490 TCCACATGCCACTTTTATCGAA 58.320 40.909 0.00 0.00 0.00 3.71
943 953 3.055458 TCTCCACATGCCACTTTTATCGA 60.055 43.478 0.00 0.00 0.00 3.59
944 954 3.063997 GTCTCCACATGCCACTTTTATCG 59.936 47.826 0.00 0.00 0.00 2.92
945 955 3.378427 GGTCTCCACATGCCACTTTTATC 59.622 47.826 0.00 0.00 0.00 1.75
948 958 1.620822 GGTCTCCACATGCCACTTTT 58.379 50.000 0.00 0.00 0.00 2.27
961 971 1.550524 GGGAATTTTGCTTGGGTCTCC 59.449 52.381 0.00 0.00 0.00 3.71
969 979 6.239217 AGTCTTTCAAAGGGAATTTTGCTT 57.761 33.333 0.00 0.00 37.83 3.91
987 997 6.995091 ACTTCTTCTTCATTTGCACTAGTCTT 59.005 34.615 0.00 0.00 0.00 3.01
997 1007 6.016777 AGCAGGTACAACTTCTTCTTCATTTG 60.017 38.462 0.00 0.00 0.00 2.32
1012 1022 6.014070 TCCACAGTAAAGAATAGCAGGTACAA 60.014 38.462 0.00 0.00 0.00 2.41
1029 1039 1.771854 TGTTCAAAGCCCTCCACAGTA 59.228 47.619 0.00 0.00 0.00 2.74
1063 1073 4.167502 AGGGTCATCATCATTTCCATCTGT 59.832 41.667 0.00 0.00 0.00 3.41
1096 1106 3.009033 TCCTTATGTTCCCCTTCAGTGTG 59.991 47.826 0.00 0.00 0.00 3.82
1097 1107 3.256704 TCCTTATGTTCCCCTTCAGTGT 58.743 45.455 0.00 0.00 0.00 3.55
1098 1108 4.080356 TCATCCTTATGTTCCCCTTCAGTG 60.080 45.833 0.00 0.00 34.50 3.66
1099 1109 4.111577 TCATCCTTATGTTCCCCTTCAGT 58.888 43.478 0.00 0.00 34.50 3.41
1100 1110 4.164988 ACTCATCCTTATGTTCCCCTTCAG 59.835 45.833 0.00 0.00 34.50 3.02
1101 1111 4.111577 ACTCATCCTTATGTTCCCCTTCA 58.888 43.478 0.00 0.00 34.50 3.02
1102 1112 4.779993 ACTCATCCTTATGTTCCCCTTC 57.220 45.455 0.00 0.00 34.50 3.46
1103 1113 4.325344 CCAACTCATCCTTATGTTCCCCTT 60.325 45.833 0.00 0.00 34.50 3.95
1104 1114 3.203040 CCAACTCATCCTTATGTTCCCCT 59.797 47.826 0.00 0.00 34.50 4.79
1105 1115 3.555966 CCAACTCATCCTTATGTTCCCC 58.444 50.000 0.00 0.00 34.50 4.81
1106 1116 3.555966 CCCAACTCATCCTTATGTTCCC 58.444 50.000 0.00 0.00 34.50 3.97
1107 1117 2.952310 GCCCAACTCATCCTTATGTTCC 59.048 50.000 0.00 0.00 34.50 3.62
1108 1118 3.620488 TGCCCAACTCATCCTTATGTTC 58.380 45.455 0.00 0.00 34.50 3.18
1109 1119 3.266772 TCTGCCCAACTCATCCTTATGTT 59.733 43.478 0.00 0.00 34.50 2.71
1110 1120 2.846206 TCTGCCCAACTCATCCTTATGT 59.154 45.455 0.00 0.00 34.50 2.29
1111 1121 3.565764 TCTGCCCAACTCATCCTTATG 57.434 47.619 0.00 0.00 0.00 1.90
1112 1122 4.591321 TTTCTGCCCAACTCATCCTTAT 57.409 40.909 0.00 0.00 0.00 1.73
1113 1123 4.018506 TCATTTCTGCCCAACTCATCCTTA 60.019 41.667 0.00 0.00 0.00 2.69
1114 1124 2.978156 TTTCTGCCCAACTCATCCTT 57.022 45.000 0.00 0.00 0.00 3.36
1115 1125 2.309755 TCATTTCTGCCCAACTCATCCT 59.690 45.455 0.00 0.00 0.00 3.24
1116 1126 2.726821 TCATTTCTGCCCAACTCATCC 58.273 47.619 0.00 0.00 0.00 3.51
1117 1127 4.012374 TCTTCATTTCTGCCCAACTCATC 58.988 43.478 0.00 0.00 0.00 2.92
1118 1128 4.038271 TCTTCATTTCTGCCCAACTCAT 57.962 40.909 0.00 0.00 0.00 2.90
1119 1129 3.507162 TCTTCATTTCTGCCCAACTCA 57.493 42.857 0.00 0.00 0.00 3.41
1120 1130 4.012374 TCATCTTCATTTCTGCCCAACTC 58.988 43.478 0.00 0.00 0.00 3.01
1121 1131 4.038271 TCATCTTCATTTCTGCCCAACT 57.962 40.909 0.00 0.00 0.00 3.16
1122 1132 4.996788 ATCATCTTCATTTCTGCCCAAC 57.003 40.909 0.00 0.00 0.00 3.77
1123 1133 5.595542 CCTTATCATCTTCATTTCTGCCCAA 59.404 40.000 0.00 0.00 0.00 4.12
1124 1134 5.103982 TCCTTATCATCTTCATTTCTGCCCA 60.104 40.000 0.00 0.00 0.00 5.36
1125 1135 5.380043 TCCTTATCATCTTCATTTCTGCCC 58.620 41.667 0.00 0.00 0.00 5.36
1126 1136 8.510505 GTTATCCTTATCATCTTCATTTCTGCC 58.489 37.037 0.00 0.00 0.00 4.85
1127 1137 9.060347 TGTTATCCTTATCATCTTCATTTCTGC 57.940 33.333 0.00 0.00 0.00 4.26
1156 1199 7.228590 TCAATTGCTTCATCTCCATCATCATA 58.771 34.615 0.00 0.00 0.00 2.15
1158 1201 5.442391 TCAATTGCTTCATCTCCATCATCA 58.558 37.500 0.00 0.00 0.00 3.07
1170 1213 2.751259 GTCCAGCTCATCAATTGCTTCA 59.249 45.455 0.00 0.00 34.51 3.02
1176 1219 2.641305 GCTCTGTCCAGCTCATCAATT 58.359 47.619 0.00 0.00 36.38 2.32
1197 1240 2.629617 AGCTTGTTTGGATGGGAAGTTG 59.370 45.455 0.00 0.00 0.00 3.16
1216 1259 1.531578 GTTCGAACTTGAAGGGTCAGC 59.468 52.381 20.97 0.00 34.49 4.26
1219 1262 3.107642 TCTGTTCGAACTTGAAGGGTC 57.892 47.619 27.32 0.00 0.00 4.46
1220 1263 3.325135 AGATCTGTTCGAACTTGAAGGGT 59.675 43.478 27.32 11.40 0.00 4.34
1222 1265 4.310769 ACAGATCTGTTCGAACTTGAAGG 58.689 43.478 27.32 18.58 41.83 3.46
1238 1281 1.728971 CAGACAGCCGTTGAACAGATC 59.271 52.381 0.00 0.00 0.00 2.75
1240 1283 0.880278 GCAGACAGCCGTTGAACAGA 60.880 55.000 0.00 0.00 37.23 3.41
1299 1342 2.373224 TCCACAAAACTGTCATGTGCA 58.627 42.857 16.20 3.66 42.34 4.57
1311 1354 8.802267 CCACTATTCCTAATTTCTTCCACAAAA 58.198 33.333 0.00 0.00 0.00 2.44
1315 1358 7.065923 GTGACCACTATTCCTAATTTCTTCCAC 59.934 40.741 0.00 0.00 0.00 4.02
1320 1363 8.383175 TCTTTGTGACCACTATTCCTAATTTCT 58.617 33.333 1.62 0.00 0.00 2.52
1326 1369 6.271391 TCCTTTCTTTGTGACCACTATTCCTA 59.729 38.462 1.62 0.00 0.00 2.94
1329 1372 6.710744 TCTTCCTTTCTTTGTGACCACTATTC 59.289 38.462 1.62 0.00 0.00 1.75
1332 1375 5.365605 TCTCTTCCTTTCTTTGTGACCACTA 59.634 40.000 1.62 0.00 0.00 2.74
1338 1381 6.485830 TCTTCTCTCTTCCTTTCTTTGTGA 57.514 37.500 0.00 0.00 0.00 3.58
1341 1384 7.661027 ACATCTTCTTCTCTCTTCCTTTCTTTG 59.339 37.037 0.00 0.00 0.00 2.77
1343 1386 7.160726 CACATCTTCTTCTCTCTTCCTTTCTT 58.839 38.462 0.00 0.00 0.00 2.52
1347 1390 4.323409 GCCACATCTTCTTCTCTCTTCCTT 60.323 45.833 0.00 0.00 0.00 3.36
1350 1393 4.183101 CAGCCACATCTTCTTCTCTCTTC 58.817 47.826 0.00 0.00 0.00 2.87
1355 1398 3.325293 TCACAGCCACATCTTCTTCTC 57.675 47.619 0.00 0.00 0.00 2.87
1358 1401 6.543831 GGTATTAATCACAGCCACATCTTCTT 59.456 38.462 0.00 0.00 0.00 2.52
1359 1402 6.058183 GGTATTAATCACAGCCACATCTTCT 58.942 40.000 0.00 0.00 0.00 2.85
1367 1410 3.897239 CAAGGGGTATTAATCACAGCCA 58.103 45.455 7.14 0.00 0.00 4.75
1369 1412 3.555966 AGCAAGGGGTATTAATCACAGC 58.444 45.455 0.00 0.00 0.00 4.40
1377 1420 6.157994 ACATCTTGTAAGAGCAAGGGGTATTA 59.842 38.462 6.06 0.00 44.26 0.98
1386 1429 5.610398 TCAGTCAACATCTTGTAAGAGCAA 58.390 37.500 0.51 0.00 38.66 3.91
1395 1438 2.740981 GCTGTCCTCAGTCAACATCTTG 59.259 50.000 0.00 0.00 43.05 3.02
1399 1442 1.067283 CGAGCTGTCCTCAGTCAACAT 60.067 52.381 0.00 0.00 43.05 2.71
1402 1445 0.539669 TCCGAGCTGTCCTCAGTCAA 60.540 55.000 0.00 0.00 43.05 3.18
1405 1448 0.613292 ATGTCCGAGCTGTCCTCAGT 60.613 55.000 0.00 0.00 43.05 3.41
1413 1456 2.898729 ACATAGGAATGTCCGAGCTG 57.101 50.000 0.00 0.00 42.92 4.24
1422 1465 5.836347 TCGAGATGAACAGACATAGGAATG 58.164 41.667 0.00 0.00 39.17 2.67
1443 1490 3.243873 TGAGCTATTGGGAGCAGTATTCG 60.244 47.826 0.00 0.00 45.43 3.34
1455 1502 7.500227 TCCATCTCAAATTTACTGAGCTATTGG 59.500 37.037 1.40 5.90 40.18 3.16
1459 1506 6.384015 TCCTCCATCTCAAATTTACTGAGCTA 59.616 38.462 1.40 0.00 40.18 3.32
1527 1574 5.396436 GGCCATAGCTAAGTCTTCAGGTAAA 60.396 44.000 0.00 0.00 39.73 2.01
1539 1586 2.508526 GACCCAATGGCCATAGCTAAG 58.491 52.381 21.15 7.58 39.73 2.18
1542 1589 1.149174 CGACCCAATGGCCATAGCT 59.851 57.895 21.15 0.00 39.73 3.32
1551 1598 5.008019 CAGAGATATTTTCACCGACCCAATG 59.992 44.000 0.00 0.00 0.00 2.82
1557 1604 5.601662 TCCATCAGAGATATTTTCACCGAC 58.398 41.667 0.00 0.00 0.00 4.79
1560 1607 9.956640 ATAGATTCCATCAGAGATATTTTCACC 57.043 33.333 0.00 0.00 0.00 4.02
1572 1619 7.181485 TCAGCATTATCCATAGATTCCATCAGA 59.819 37.037 0.00 0.00 33.67 3.27
1590 1637 7.845037 TCTTCTTCTTCTCAGATTCAGCATTA 58.155 34.615 0.00 0.00 0.00 1.90
1620 1667 5.006746 CCATGCGGTATTTCTCTTAGTGTTC 59.993 44.000 0.00 0.00 0.00 3.18
1631 1678 2.200337 GGGCCCCATGCGGTATTTC 61.200 63.158 12.23 0.00 42.61 2.17
1632 1679 2.123468 GGGCCCCATGCGGTATTT 60.123 61.111 12.23 0.00 42.61 1.40
1653 1700 3.570550 TGGTTTTTGGTCTGTTTATCGGG 59.429 43.478 0.00 0.00 0.00 5.14
1655 1702 5.468746 TCTCTGGTTTTTGGTCTGTTTATCG 59.531 40.000 0.00 0.00 0.00 2.92
1659 1706 5.200483 TGATCTCTGGTTTTTGGTCTGTTT 58.800 37.500 0.00 0.00 0.00 2.83
1668 1715 6.923199 ACATTTCCATGATCTCTGGTTTTT 57.077 33.333 12.74 0.00 35.19 1.94
1710 1758 6.432472 AGGTTTTTCTTCAGAAGATAGGCTTG 59.568 38.462 13.86 0.00 36.83 4.01
1712 1760 5.942826 CAGGTTTTTCTTCAGAAGATAGGCT 59.057 40.000 13.86 0.00 37.38 4.58
1715 1763 7.390027 TCTCCAGGTTTTTCTTCAGAAGATAG 58.610 38.462 13.86 0.00 37.38 2.08
1721 1769 5.316987 GGAATCTCCAGGTTTTTCTTCAGA 58.683 41.667 0.00 0.00 36.28 3.27
1730 1778 2.041755 GGAAGTGGGAATCTCCAGGTTT 59.958 50.000 0.00 0.00 38.64 3.27
1751 1799 7.644157 GTGTTAGCAAAAGAGTTACCTTTGAAG 59.356 37.037 6.42 0.00 36.57 3.02
1763 1811 6.721571 TTAAGATCCGTGTTAGCAAAAGAG 57.278 37.500 0.00 0.00 0.00 2.85
1774 1822 3.454812 AGCAAGGGTATTAAGATCCGTGT 59.545 43.478 15.35 1.91 32.67 4.49
1776 1824 4.444449 GGAAGCAAGGGTATTAAGATCCGT 60.444 45.833 0.00 0.00 0.00 4.69
1777 1825 4.065789 GGAAGCAAGGGTATTAAGATCCG 58.934 47.826 0.00 0.00 0.00 4.18
1782 1830 5.300286 CAGAATGGGAAGCAAGGGTATTAAG 59.700 44.000 0.00 0.00 0.00 1.85
1783 1831 5.044476 TCAGAATGGGAAGCAAGGGTATTAA 60.044 40.000 0.00 0.00 36.16 1.40
1787 1835 2.274542 TCAGAATGGGAAGCAAGGGTA 58.725 47.619 0.00 0.00 36.16 3.69
1788 1836 1.075601 TCAGAATGGGAAGCAAGGGT 58.924 50.000 0.00 0.00 36.16 4.34
1789 1837 2.220653 TTCAGAATGGGAAGCAAGGG 57.779 50.000 0.00 0.00 36.16 3.95
1790 1838 4.119442 CATTTCAGAATGGGAAGCAAGG 57.881 45.455 0.00 0.00 39.17 3.61
1814 1862 7.404104 TCCCTATTATCACCAATGCAGATATCT 59.596 37.037 0.00 0.00 0.00 1.98
1838 1886 6.373774 CCATAATGATATCCTTGCACTCTTCC 59.626 42.308 0.00 0.00 0.00 3.46
1839 1887 7.118971 GTCCATAATGATATCCTTGCACTCTTC 59.881 40.741 0.00 0.00 0.00 2.87
1898 1946 6.845758 ATCTCAGGATTCAAATCAGCAAAA 57.154 33.333 5.19 0.00 37.15 2.44
1910 1958 7.454260 AACTGGTAAAACAATCTCAGGATTC 57.546 36.000 0.00 0.00 39.87 2.52
1943 1991 7.787904 AGGGAGGTACAGTTATGTATATCAACA 59.212 37.037 0.00 0.00 43.62 3.33
1944 1992 8.191534 AGGGAGGTACAGTTATGTATATCAAC 57.808 38.462 0.00 0.00 43.62 3.18
1950 1998 6.650120 CAACAAGGGAGGTACAGTTATGTAT 58.350 40.000 0.00 0.00 43.62 2.29
1952 2000 4.806286 GCAACAAGGGAGGTACAGTTATGT 60.806 45.833 0.00 0.00 43.76 2.29
1953 2001 3.689649 GCAACAAGGGAGGTACAGTTATG 59.310 47.826 0.00 0.00 0.00 1.90
1955 2003 2.706723 TGCAACAAGGGAGGTACAGTTA 59.293 45.455 0.00 0.00 0.00 2.24
1958 2006 1.347707 TCTGCAACAAGGGAGGTACAG 59.652 52.381 0.00 0.00 0.00 2.74
1959 2007 1.429930 TCTGCAACAAGGGAGGTACA 58.570 50.000 0.00 0.00 0.00 2.90
1960 2008 2.561478 TTCTGCAACAAGGGAGGTAC 57.439 50.000 0.00 0.00 0.00 3.34
1963 2011 1.615392 CCTTTTCTGCAACAAGGGAGG 59.385 52.381 9.48 1.86 34.47 4.30
1964 2012 1.000171 GCCTTTTCTGCAACAAGGGAG 60.000 52.381 16.33 0.00 38.04 4.30
1969 2017 3.820557 AGAGTAGCCTTTTCTGCAACAA 58.179 40.909 0.00 0.00 0.00 2.83
1971 2019 4.822026 TCTAGAGTAGCCTTTTCTGCAAC 58.178 43.478 0.00 0.00 0.00 4.17
1975 2023 7.286775 ACCTAAGATCTAGAGTAGCCTTTTCTG 59.713 40.741 0.00 0.00 0.00 3.02
1976 2024 7.359056 ACCTAAGATCTAGAGTAGCCTTTTCT 58.641 38.462 0.00 0.00 0.00 2.52
1977 2025 7.591421 ACCTAAGATCTAGAGTAGCCTTTTC 57.409 40.000 0.00 0.00 0.00 2.29
1979 2027 7.726738 CCTTACCTAAGATCTAGAGTAGCCTTT 59.273 40.741 0.00 0.00 35.33 3.11
1987 2035 4.090819 GCCCCCTTACCTAAGATCTAGAG 58.909 52.174 0.00 0.00 35.33 2.43
1993 2041 2.127708 CAGTGCCCCCTTACCTAAGAT 58.872 52.381 0.00 0.00 35.33 2.40
1996 2044 0.549169 AGCAGTGCCCCCTTACCTAA 60.549 55.000 12.58 0.00 0.00 2.69
2001 2049 4.047125 GCCAGCAGTGCCCCCTTA 62.047 66.667 12.58 0.00 0.00 2.69
2017 2065 0.109532 GGGGCTTTCTAGATCCAGGC 59.890 60.000 10.59 10.59 0.00 4.85
2030 2078 0.621609 TGGTATTAACTGCGGGGCTT 59.378 50.000 0.00 0.00 0.00 4.35
2036 2084 5.123344 AGGCTAACTTTTGGTATTAACTGCG 59.877 40.000 0.00 0.00 0.00 5.18
2039 2087 7.882179 CACAAGGCTAACTTTTGGTATTAACT 58.118 34.615 0.00 0.00 37.29 2.24
2101 2149 4.832823 CCCACACCTCTAACTTTCCAAAAT 59.167 41.667 0.00 0.00 0.00 1.82
2110 2158 1.697982 GGTTGTCCCACACCTCTAACT 59.302 52.381 0.00 0.00 0.00 2.24
2111 2159 1.697982 AGGTTGTCCCACACCTCTAAC 59.302 52.381 0.00 0.00 34.66 2.34
2120 2168 3.892588 TGAATTTTACCAGGTTGTCCCAC 59.107 43.478 0.00 0.00 34.66 4.61
2122 2170 4.022329 CACTGAATTTTACCAGGTTGTCCC 60.022 45.833 0.00 0.00 34.85 4.46
2138 2186 0.779997 AAGTCCCCAAGGCACTGAAT 59.220 50.000 0.00 0.00 40.86 2.57
2140 2188 0.178992 CAAAGTCCCCAAGGCACTGA 60.179 55.000 0.00 0.00 40.86 3.41
2149 2197 8.333235 ACATGATTATTACTAACAAAGTCCCCA 58.667 33.333 0.00 0.00 39.80 4.96
2163 2211 7.826690 ACCCACAAAGTCAACATGATTATTAC 58.173 34.615 0.00 0.00 0.00 1.89
2174 2222 3.375922 TCGAAGAAACCCACAAAGTCAAC 59.624 43.478 0.00 0.00 0.00 3.18
2225 2273 9.685276 ATTGTTACTGGAGATCATATTCAACAA 57.315 29.630 12.14 12.14 36.81 2.83
2239 2287 6.974622 GCCATGTAAAATCATTGTTACTGGAG 59.025 38.462 15.39 0.00 34.19 3.86
2240 2288 6.435591 TGCCATGTAAAATCATTGTTACTGGA 59.564 34.615 15.39 0.00 34.19 3.86
2242 2290 7.760794 ACATGCCATGTAAAATCATTGTTACTG 59.239 33.333 8.96 0.00 42.78 2.74
2243 2291 7.760794 CACATGCCATGTAAAATCATTGTTACT 59.239 33.333 10.53 0.00 42.70 2.24
2248 2296 5.113383 AGCACATGCCATGTAAAATCATTG 58.887 37.500 10.53 0.00 42.70 2.82
2272 2320 4.040952 CCTCCAGCAGTATTATTAGCAGGT 59.959 45.833 0.00 0.00 35.45 4.00
2323 2371 9.761504 TTGTGAGAAAAGCAAATGATATCAAAA 57.238 25.926 9.99 0.00 0.00 2.44
2363 2411 8.687292 TCACTCTTACTCTTAACAGTAACAGA 57.313 34.615 11.14 3.61 34.53 3.41
2364 2412 9.347934 CATCACTCTTACTCTTAACAGTAACAG 57.652 37.037 0.00 2.65 34.53 3.16
2365 2413 8.304596 CCATCACTCTTACTCTTAACAGTAACA 58.695 37.037 0.00 0.00 34.53 2.41
2383 2431 3.451141 TGCCAAACAAAACCATCACTC 57.549 42.857 0.00 0.00 0.00 3.51
2413 2461 6.097156 TCATTATAAGTTGTGCCGTAAACG 57.903 37.500 0.00 0.00 39.44 3.60
2419 2467 8.999431 ACCTTATATTCATTATAAGTTGTGCCG 58.001 33.333 10.08 0.00 44.40 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.