Multiple sequence alignment - TraesCS7D01G537900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G537900 chr7D 100.000 2476 0 0 555 3030 629214075 629211600 0.000000e+00 4573.0
1 TraesCS7D01G537900 chr7D 100.000 332 0 0 3212 3543 629211418 629211087 6.500000e-172 614.0
2 TraesCS7D01G537900 chr7D 100.000 278 0 0 1 278 629214629 629214352 6.780000e-142 514.0
3 TraesCS7D01G537900 chr7B 91.714 2112 100 29 555 2620 730874291 730876373 0.000000e+00 2861.0
4 TraesCS7D01G537900 chr7B 91.002 1656 89 20 555 2189 686527575 686529191 0.000000e+00 2178.0
5 TraesCS7D01G537900 chr7B 92.279 272 20 1 2658 2928 686532781 686533052 5.550000e-103 385.0
6 TraesCS7D01G537900 chr7B 88.344 326 27 4 3229 3543 686533430 686533755 7.180000e-102 381.0
7 TraesCS7D01G537900 chr7B 91.892 222 18 0 2320 2541 686529935 686530156 9.550000e-81 311.0
8 TraesCS7D01G537900 chr7B 84.322 236 37 0 1506 1741 732055704 732055469 7.650000e-57 231.0
9 TraesCS7D01G537900 chr7B 83.898 236 38 0 1506 1741 731994350 731994115 3.560000e-55 226.0
10 TraesCS7D01G537900 chr7B 77.017 409 58 21 992 1381 732056180 732055789 6.000000e-48 202.0
11 TraesCS7D01G537900 chr7B 76.961 408 60 19 992 1381 732349926 732350317 6.000000e-48 202.0
12 TraesCS7D01G537900 chr7B 96.667 90 2 1 2541 2630 686532693 686532781 7.920000e-32 148.0
13 TraesCS7D01G537900 chr7B 90.698 86 3 1 2246 2326 686529193 686529278 3.740000e-20 110.0
14 TraesCS7D01G537900 chr3D 85.200 250 34 3 10 258 436166144 436165897 1.630000e-63 254.0
15 TraesCS7D01G537900 chr3A 83.936 249 39 1 10 258 574868668 574868421 1.640000e-58 237.0
16 TraesCS7D01G537900 chrUn 84.322 236 37 0 1506 1741 160415450 160415215 7.650000e-57 231.0
17 TraesCS7D01G537900 chrUn 84.322 236 37 0 1506 1741 294251971 294251736 7.650000e-57 231.0
18 TraesCS7D01G537900 chrUn 83.898 236 38 0 1506 1741 160351178 160350943 3.560000e-55 226.0
19 TraesCS7D01G537900 chrUn 83.898 236 38 0 1506 1741 405423297 405423062 3.560000e-55 226.0
20 TraesCS7D01G537900 chrUn 83.898 236 38 0 1506 1741 417519447 417519212 3.560000e-55 226.0
21 TraesCS7D01G537900 chrUn 76.961 408 60 19 992 1381 88465371 88464980 6.000000e-48 202.0
22 TraesCS7D01G537900 chrUn 77.017 409 58 21 992 1381 160415926 160415535 6.000000e-48 202.0
23 TraesCS7D01G537900 chrUn 77.017 409 58 21 992 1381 294252447 294252056 6.000000e-48 202.0
24 TraesCS7D01G537900 chrUn 76.613 372 53 19 992 1345 88413727 88413372 1.310000e-39 174.0
25 TraesCS7D01G537900 chrUn 76.613 372 53 18 992 1345 408500728 408500373 1.310000e-39 174.0
26 TraesCS7D01G537900 chrUn 74.644 351 55 21 992 1324 160351616 160351282 1.340000e-24 124.0
27 TraesCS7D01G537900 chr3B 82.731 249 42 1 10 258 571814093 571813846 1.660000e-53 220.0
28 TraesCS7D01G537900 chr4B 81.526 249 44 2 10 258 611706338 611706584 1.670000e-48 204.0
29 TraesCS7D01G537900 chr4D 82.609 230 36 4 31 258 341927860 341927633 2.160000e-47 200.0
30 TraesCS7D01G537900 chr2D 81.818 231 42 0 2312 2542 54077261 54077031 1.000000e-45 195.0
31 TraesCS7D01G537900 chr2D 81.013 237 44 1 2312 2547 54103313 54103077 1.680000e-43 187.0
32 TraesCS7D01G537900 chr7A 84.896 192 28 1 10 201 68918102 68918292 3.610000e-45 193.0
33 TraesCS7D01G537900 chr2A 79.920 249 48 2 10 258 738000478 738000724 7.810000e-42 182.0
34 TraesCS7D01G537900 chr2A 92.500 40 3 0 3407 3446 716237509 716237548 1.370000e-04 58.4
35 TraesCS7D01G537900 chr2B 80.081 246 43 5 15 258 737236160 737236401 1.010000e-40 178.0
36 TraesCS7D01G537900 chr5A 78.862 246 45 7 14 256 489740269 489740028 3.660000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G537900 chr7D 629211087 629214629 3542 True 1900.333333 4573 100.000000 1 3543 3 chr7D.!!$R1 3542
1 TraesCS7D01G537900 chr7B 730874291 730876373 2082 False 2861.000000 2861 91.714000 555 2620 1 chr7B.!!$F1 2065
2 TraesCS7D01G537900 chr7B 686527575 686533755 6180 False 585.500000 2178 91.813667 555 3543 6 chr7B.!!$F3 2988
3 TraesCS7D01G537900 chr7B 732055469 732056180 711 True 216.500000 231 80.669500 992 1741 2 chr7B.!!$R2 749
4 TraesCS7D01G537900 chrUn 160415215 160415926 711 True 216.500000 231 80.669500 992 1741 2 chrUn.!!$R7 749
5 TraesCS7D01G537900 chrUn 294251736 294252447 711 True 216.500000 231 80.669500 992 1741 2 chrUn.!!$R8 749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.033642 TGTACGGTTGCGTGGATTCA 59.966 50.0 0.0 0.00 0.00 2.57 F
271 272 0.108424 ATGAGGAGCAAGACGTCAGC 60.108 55.0 19.5 20.42 36.02 4.26 F
1383 1413 0.335361 AGTCCCATCCCGTGAGTACT 59.665 55.0 0.0 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1494 0.323302 TGCTCCGTGGCACTGAATTA 59.677 50.0 16.72 1.09 37.29 1.40 R
1447 1509 0.390472 CTTCCTTCACCCTCGTGCTC 60.390 60.0 0.00 0.00 40.04 4.26 R
3218 6508 0.036010 AATCAAGACAGACAGCGGGG 60.036 55.0 0.00 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.975168 GGCATACCTAACCCGATGTAT 57.025 47.619 0.00 0.00 0.00 2.29
21 22 4.281898 GGCATACCTAACCCGATGTATT 57.718 45.455 0.00 0.00 0.00 1.89
22 23 4.648651 GGCATACCTAACCCGATGTATTT 58.351 43.478 0.00 0.00 0.00 1.40
23 24 4.454504 GGCATACCTAACCCGATGTATTTG 59.545 45.833 0.00 0.00 0.00 2.32
24 25 5.061179 GCATACCTAACCCGATGTATTTGT 58.939 41.667 0.00 0.00 0.00 2.83
25 26 5.529800 GCATACCTAACCCGATGTATTTGTT 59.470 40.000 0.00 0.00 0.00 2.83
26 27 6.038936 GCATACCTAACCCGATGTATTTGTTT 59.961 38.462 0.00 0.00 0.00 2.83
27 28 5.890424 ACCTAACCCGATGTATTTGTTTG 57.110 39.130 0.00 0.00 0.00 2.93
28 29 5.562635 ACCTAACCCGATGTATTTGTTTGA 58.437 37.500 0.00 0.00 0.00 2.69
29 30 5.646360 ACCTAACCCGATGTATTTGTTTGAG 59.354 40.000 0.00 0.00 0.00 3.02
30 31 5.065988 CCTAACCCGATGTATTTGTTTGAGG 59.934 44.000 0.00 0.00 0.00 3.86
31 32 3.352648 ACCCGATGTATTTGTTTGAGGG 58.647 45.455 0.00 0.00 41.87 4.30
32 33 3.009695 ACCCGATGTATTTGTTTGAGGGA 59.990 43.478 3.47 0.00 39.55 4.20
33 34 4.207165 CCCGATGTATTTGTTTGAGGGAT 58.793 43.478 0.00 0.00 38.62 3.85
34 35 4.275936 CCCGATGTATTTGTTTGAGGGATC 59.724 45.833 0.00 0.00 38.62 3.36
35 36 4.024893 CCGATGTATTTGTTTGAGGGATCG 60.025 45.833 0.00 0.00 0.00 3.69
36 37 4.808895 CGATGTATTTGTTTGAGGGATCGA 59.191 41.667 0.00 0.00 33.68 3.59
37 38 5.466728 CGATGTATTTGTTTGAGGGATCGAT 59.533 40.000 0.00 0.00 33.68 3.59
38 39 6.564686 CGATGTATTTGTTTGAGGGATCGATG 60.565 42.308 0.54 0.00 33.68 3.84
39 40 4.881273 TGTATTTGTTTGAGGGATCGATGG 59.119 41.667 0.54 0.00 0.00 3.51
40 41 3.712016 TTTGTTTGAGGGATCGATGGA 57.288 42.857 0.54 0.00 0.00 3.41
41 42 3.712016 TTGTTTGAGGGATCGATGGAA 57.288 42.857 0.54 0.00 0.00 3.53
42 43 3.931907 TGTTTGAGGGATCGATGGAAT 57.068 42.857 0.54 0.00 0.00 3.01
43 44 3.544684 TGTTTGAGGGATCGATGGAATG 58.455 45.455 0.54 0.00 0.00 2.67
44 45 3.199727 TGTTTGAGGGATCGATGGAATGA 59.800 43.478 0.54 0.00 0.00 2.57
45 46 3.475566 TTGAGGGATCGATGGAATGAC 57.524 47.619 0.54 0.00 0.00 3.06
46 47 2.682594 TGAGGGATCGATGGAATGACT 58.317 47.619 0.54 0.00 0.00 3.41
47 48 3.041211 TGAGGGATCGATGGAATGACTT 58.959 45.455 0.54 0.00 0.00 3.01
48 49 3.455910 TGAGGGATCGATGGAATGACTTT 59.544 43.478 0.54 0.00 0.00 2.66
49 50 3.812053 GAGGGATCGATGGAATGACTTTG 59.188 47.826 0.54 0.00 0.00 2.77
50 51 3.455910 AGGGATCGATGGAATGACTTTGA 59.544 43.478 0.54 0.00 0.00 2.69
51 52 4.080356 AGGGATCGATGGAATGACTTTGAA 60.080 41.667 0.54 0.00 0.00 2.69
52 53 4.823989 GGGATCGATGGAATGACTTTGAAT 59.176 41.667 0.54 0.00 0.00 2.57
53 54 5.300286 GGGATCGATGGAATGACTTTGAATT 59.700 40.000 0.54 0.00 0.00 2.17
54 55 6.486657 GGGATCGATGGAATGACTTTGAATTA 59.513 38.462 0.54 0.00 0.00 1.40
55 56 7.013274 GGGATCGATGGAATGACTTTGAATTAA 59.987 37.037 0.54 0.00 0.00 1.40
56 57 7.857885 GGATCGATGGAATGACTTTGAATTAAC 59.142 37.037 0.54 0.00 0.00 2.01
57 58 7.680442 TCGATGGAATGACTTTGAATTAACA 57.320 32.000 0.00 0.00 0.00 2.41
58 59 8.279970 TCGATGGAATGACTTTGAATTAACAT 57.720 30.769 0.00 0.00 0.00 2.71
59 60 8.397906 TCGATGGAATGACTTTGAATTAACATC 58.602 33.333 0.00 0.00 32.43 3.06
60 61 8.183536 CGATGGAATGACTTTGAATTAACATCA 58.816 33.333 0.00 0.00 33.83 3.07
62 63 9.811995 ATGGAATGACTTTGAATTAACATCATG 57.188 29.630 0.00 0.00 0.00 3.07
63 64 8.805175 TGGAATGACTTTGAATTAACATCATGT 58.195 29.630 0.00 0.00 0.00 3.21
83 84 9.872721 ATCATGTATGTGTGAAATAAAATTGCA 57.127 25.926 0.00 0.00 0.00 4.08
84 85 9.872721 TCATGTATGTGTGAAATAAAATTGCAT 57.127 25.926 0.00 0.00 0.00 3.96
87 88 9.486497 TGTATGTGTGAAATAAAATTGCATTGT 57.514 25.926 0.00 0.00 0.00 2.71
90 91 9.709495 ATGTGTGAAATAAAATTGCATTGTAGT 57.291 25.926 0.00 0.00 0.00 2.73
91 92 9.539825 TGTGTGAAATAAAATTGCATTGTAGTT 57.460 25.926 0.00 0.00 0.00 2.24
92 93 9.796062 GTGTGAAATAAAATTGCATTGTAGTTG 57.204 29.630 0.00 0.00 0.00 3.16
93 94 9.539825 TGTGAAATAAAATTGCATTGTAGTTGT 57.460 25.926 0.00 0.00 0.00 3.32
100 101 7.816945 AAATTGCATTGTAGTTGTATCTTGC 57.183 32.000 0.00 0.00 0.00 4.01
101 102 4.963276 TGCATTGTAGTTGTATCTTGCC 57.037 40.909 0.00 0.00 0.00 4.52
102 103 4.588899 TGCATTGTAGTTGTATCTTGCCT 58.411 39.130 0.00 0.00 0.00 4.75
103 104 5.009631 TGCATTGTAGTTGTATCTTGCCTT 58.990 37.500 0.00 0.00 0.00 4.35
104 105 5.476599 TGCATTGTAGTTGTATCTTGCCTTT 59.523 36.000 0.00 0.00 0.00 3.11
105 106 6.030228 GCATTGTAGTTGTATCTTGCCTTTC 58.970 40.000 0.00 0.00 0.00 2.62
106 107 6.127897 GCATTGTAGTTGTATCTTGCCTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
107 108 7.467623 CATTGTAGTTGTATCTTGCCTTTCTC 58.532 38.462 0.00 0.00 0.00 2.87
108 109 6.109156 TGTAGTTGTATCTTGCCTTTCTCA 57.891 37.500 0.00 0.00 0.00 3.27
109 110 5.932303 TGTAGTTGTATCTTGCCTTTCTCAC 59.068 40.000 0.00 0.00 0.00 3.51
110 111 3.997021 AGTTGTATCTTGCCTTTCTCACG 59.003 43.478 0.00 0.00 0.00 4.35
111 112 3.678056 TGTATCTTGCCTTTCTCACGT 57.322 42.857 0.00 0.00 0.00 4.49
112 113 4.002906 TGTATCTTGCCTTTCTCACGTT 57.997 40.909 0.00 0.00 0.00 3.99
113 114 3.994392 TGTATCTTGCCTTTCTCACGTTC 59.006 43.478 0.00 0.00 0.00 3.95
114 115 1.878953 TCTTGCCTTTCTCACGTTCC 58.121 50.000 0.00 0.00 0.00 3.62
115 116 1.416401 TCTTGCCTTTCTCACGTTCCT 59.584 47.619 0.00 0.00 0.00 3.36
116 117 1.801178 CTTGCCTTTCTCACGTTCCTC 59.199 52.381 0.00 0.00 0.00 3.71
117 118 0.319555 TGCCTTTCTCACGTTCCTCG 60.320 55.000 0.00 0.00 46.00 4.63
118 119 0.038526 GCCTTTCTCACGTTCCTCGA 60.039 55.000 0.00 0.00 42.86 4.04
119 120 1.699343 CCTTTCTCACGTTCCTCGAC 58.301 55.000 0.00 0.00 42.86 4.20
120 121 1.669211 CCTTTCTCACGTTCCTCGACC 60.669 57.143 0.00 0.00 42.86 4.79
121 122 0.316204 TTTCTCACGTTCCTCGACCC 59.684 55.000 0.00 0.00 42.86 4.46
122 123 0.538977 TTCTCACGTTCCTCGACCCT 60.539 55.000 0.00 0.00 42.86 4.34
123 124 1.213013 CTCACGTTCCTCGACCCTG 59.787 63.158 0.00 0.00 42.86 4.45
124 125 2.432628 CACGTTCCTCGACCCTGC 60.433 66.667 0.00 0.00 42.86 4.85
125 126 2.915659 ACGTTCCTCGACCCTGCA 60.916 61.111 0.00 0.00 42.86 4.41
126 127 2.125912 CGTTCCTCGACCCTGCAG 60.126 66.667 6.78 6.78 42.86 4.41
127 128 2.636412 CGTTCCTCGACCCTGCAGA 61.636 63.158 17.39 0.00 42.86 4.26
128 129 1.901085 GTTCCTCGACCCTGCAGAT 59.099 57.895 17.39 1.97 0.00 2.90
129 130 1.112113 GTTCCTCGACCCTGCAGATA 58.888 55.000 17.39 0.00 0.00 1.98
130 131 1.112113 TTCCTCGACCCTGCAGATAC 58.888 55.000 17.39 4.61 0.00 2.24
131 132 0.755698 TCCTCGACCCTGCAGATACC 60.756 60.000 17.39 0.11 0.00 2.73
132 133 1.742768 CTCGACCCTGCAGATACCC 59.257 63.158 17.39 0.00 0.00 3.69
133 134 1.001120 TCGACCCTGCAGATACCCA 59.999 57.895 17.39 0.00 0.00 4.51
134 135 0.616395 TCGACCCTGCAGATACCCAA 60.616 55.000 17.39 0.00 0.00 4.12
135 136 0.179073 CGACCCTGCAGATACCCAAG 60.179 60.000 17.39 0.00 0.00 3.61
136 137 1.204146 GACCCTGCAGATACCCAAGA 58.796 55.000 17.39 0.00 0.00 3.02
137 138 1.771255 GACCCTGCAGATACCCAAGAT 59.229 52.381 17.39 0.00 0.00 2.40
138 139 1.771255 ACCCTGCAGATACCCAAGATC 59.229 52.381 17.39 0.00 0.00 2.75
139 140 1.770658 CCCTGCAGATACCCAAGATCA 59.229 52.381 17.39 0.00 0.00 2.92
140 141 2.486191 CCCTGCAGATACCCAAGATCAC 60.486 54.545 17.39 0.00 0.00 3.06
141 142 2.171237 CCTGCAGATACCCAAGATCACA 59.829 50.000 17.39 0.00 0.00 3.58
142 143 3.464907 CTGCAGATACCCAAGATCACAG 58.535 50.000 8.42 0.00 0.00 3.66
143 144 3.106827 TGCAGATACCCAAGATCACAGA 58.893 45.455 0.00 0.00 0.00 3.41
144 145 3.133542 TGCAGATACCCAAGATCACAGAG 59.866 47.826 0.00 0.00 0.00 3.35
145 146 3.133721 GCAGATACCCAAGATCACAGAGT 59.866 47.826 0.00 0.00 0.00 3.24
146 147 4.383552 GCAGATACCCAAGATCACAGAGTT 60.384 45.833 0.00 0.00 0.00 3.01
147 148 5.738909 CAGATACCCAAGATCACAGAGTTT 58.261 41.667 0.00 0.00 0.00 2.66
148 149 5.583854 CAGATACCCAAGATCACAGAGTTTG 59.416 44.000 0.00 0.00 0.00 2.93
149 150 5.485353 AGATACCCAAGATCACAGAGTTTGA 59.515 40.000 0.00 0.00 0.00 2.69
150 151 4.013267 ACCCAAGATCACAGAGTTTGAG 57.987 45.455 0.00 0.00 0.00 3.02
151 152 3.648067 ACCCAAGATCACAGAGTTTGAGA 59.352 43.478 0.00 0.00 0.00 3.27
152 153 3.999663 CCCAAGATCACAGAGTTTGAGAC 59.000 47.826 0.00 0.00 0.00 3.36
153 154 4.503817 CCCAAGATCACAGAGTTTGAGACA 60.504 45.833 0.00 0.00 0.00 3.41
154 155 4.450419 CCAAGATCACAGAGTTTGAGACAC 59.550 45.833 0.00 0.00 0.00 3.67
155 156 3.906998 AGATCACAGAGTTTGAGACACG 58.093 45.455 0.00 0.00 0.00 4.49
156 157 3.570125 AGATCACAGAGTTTGAGACACGA 59.430 43.478 0.00 0.00 0.00 4.35
157 158 3.355626 TCACAGAGTTTGAGACACGAG 57.644 47.619 0.00 0.00 0.00 4.18
158 159 2.034685 TCACAGAGTTTGAGACACGAGG 59.965 50.000 0.00 0.00 0.00 4.63
159 160 2.034685 CACAGAGTTTGAGACACGAGGA 59.965 50.000 0.00 0.00 0.00 3.71
160 161 2.294791 ACAGAGTTTGAGACACGAGGAG 59.705 50.000 0.00 0.00 0.00 3.69
161 162 1.889829 AGAGTTTGAGACACGAGGAGG 59.110 52.381 0.00 0.00 0.00 4.30
162 163 0.318762 AGTTTGAGACACGAGGAGGC 59.681 55.000 0.00 0.00 0.00 4.70
163 164 0.318762 GTTTGAGACACGAGGAGGCT 59.681 55.000 0.00 0.00 0.00 4.58
164 165 1.544691 GTTTGAGACACGAGGAGGCTA 59.455 52.381 0.00 0.00 0.00 3.93
165 166 1.919240 TTGAGACACGAGGAGGCTAA 58.081 50.000 0.00 0.00 0.00 3.09
166 167 1.919240 TGAGACACGAGGAGGCTAAA 58.081 50.000 0.00 0.00 0.00 1.85
167 168 1.819288 TGAGACACGAGGAGGCTAAAG 59.181 52.381 0.00 0.00 0.00 1.85
168 169 2.093106 GAGACACGAGGAGGCTAAAGA 58.907 52.381 0.00 0.00 0.00 2.52
169 170 2.096248 AGACACGAGGAGGCTAAAGAG 58.904 52.381 0.00 0.00 0.00 2.85
183 184 2.839486 AAAGAGCAGGATGAACGTGA 57.161 45.000 0.00 0.00 39.69 4.35
184 185 2.839486 AAGAGCAGGATGAACGTGAA 57.161 45.000 0.00 0.00 39.69 3.18
185 186 2.376808 AGAGCAGGATGAACGTGAAG 57.623 50.000 0.00 0.00 39.69 3.02
186 187 0.723981 GAGCAGGATGAACGTGAAGC 59.276 55.000 0.00 0.00 39.69 3.86
187 188 1.016130 AGCAGGATGAACGTGAAGCG 61.016 55.000 0.00 0.00 43.25 4.68
188 189 1.421485 CAGGATGAACGTGAAGCGC 59.579 57.895 0.00 0.00 41.69 5.92
189 190 1.005037 AGGATGAACGTGAAGCGCA 60.005 52.632 11.47 0.00 46.11 6.09
190 191 0.602638 AGGATGAACGTGAAGCGCAA 60.603 50.000 11.47 0.00 46.11 4.85
191 192 0.447801 GGATGAACGTGAAGCGCAAT 59.552 50.000 11.47 0.00 46.11 3.56
192 193 1.135689 GGATGAACGTGAAGCGCAATT 60.136 47.619 11.47 0.00 46.11 2.32
193 194 2.169179 GATGAACGTGAAGCGCAATTC 58.831 47.619 11.47 6.27 46.11 2.17
194 195 1.225855 TGAACGTGAAGCGCAATTCT 58.774 45.000 11.47 0.00 46.11 2.40
195 196 1.069973 TGAACGTGAAGCGCAATTCTG 60.070 47.619 11.47 5.48 46.11 3.02
196 197 1.194547 GAACGTGAAGCGCAATTCTGA 59.805 47.619 11.47 0.00 46.11 3.27
197 198 1.225855 ACGTGAAGCGCAATTCTGAA 58.774 45.000 11.47 0.00 46.11 3.02
198 199 1.069906 ACGTGAAGCGCAATTCTGAAC 60.070 47.619 11.47 0.00 46.11 3.18
199 200 1.069973 CGTGAAGCGCAATTCTGAACA 60.070 47.619 11.47 0.00 0.00 3.18
200 201 2.310577 GTGAAGCGCAATTCTGAACAC 58.689 47.619 11.47 2.39 0.00 3.32
201 202 1.266718 TGAAGCGCAATTCTGAACACC 59.733 47.619 11.47 0.00 0.00 4.16
202 203 1.266718 GAAGCGCAATTCTGAACACCA 59.733 47.619 11.47 0.00 0.00 4.17
203 204 0.877071 AGCGCAATTCTGAACACCAG 59.123 50.000 11.47 0.00 44.27 4.00
204 205 0.593128 GCGCAATTCTGAACACCAGT 59.407 50.000 0.30 0.00 43.38 4.00
205 206 1.664016 GCGCAATTCTGAACACCAGTG 60.664 52.381 0.30 0.00 43.38 3.66
206 207 1.872952 CGCAATTCTGAACACCAGTGA 59.127 47.619 4.48 0.00 43.38 3.41
207 208 2.485426 CGCAATTCTGAACACCAGTGAT 59.515 45.455 4.48 0.00 43.38 3.06
208 209 3.684305 CGCAATTCTGAACACCAGTGATA 59.316 43.478 4.48 0.00 43.38 2.15
209 210 4.201753 CGCAATTCTGAACACCAGTGATAG 60.202 45.833 4.48 0.23 43.38 2.08
210 211 4.937620 GCAATTCTGAACACCAGTGATAGA 59.062 41.667 4.48 2.55 43.38 1.98
211 212 5.412594 GCAATTCTGAACACCAGTGATAGAA 59.587 40.000 4.48 10.67 43.38 2.10
212 213 6.072508 GCAATTCTGAACACCAGTGATAGAAA 60.073 38.462 4.48 0.00 43.38 2.52
213 214 7.522073 GCAATTCTGAACACCAGTGATAGAAAA 60.522 37.037 4.48 0.00 43.38 2.29
214 215 7.678947 ATTCTGAACACCAGTGATAGAAAAG 57.321 36.000 4.48 0.00 43.38 2.27
215 216 6.174720 TCTGAACACCAGTGATAGAAAAGT 57.825 37.500 4.48 0.00 43.38 2.66
216 217 6.591935 TCTGAACACCAGTGATAGAAAAGTT 58.408 36.000 4.48 0.00 43.38 2.66
217 218 7.054124 TCTGAACACCAGTGATAGAAAAGTTT 58.946 34.615 4.48 0.00 43.38 2.66
218 219 7.556275 TCTGAACACCAGTGATAGAAAAGTTTT 59.444 33.333 4.48 0.00 43.38 2.43
219 220 7.479980 TGAACACCAGTGATAGAAAAGTTTTG 58.520 34.615 5.36 0.00 0.00 2.44
220 221 7.122055 TGAACACCAGTGATAGAAAAGTTTTGT 59.878 33.333 5.36 4.21 0.00 2.83
221 222 8.514330 AACACCAGTGATAGAAAAGTTTTGTA 57.486 30.769 5.36 6.63 0.00 2.41
222 223 7.927048 ACACCAGTGATAGAAAAGTTTTGTAC 58.073 34.615 5.36 0.00 0.00 2.90
223 224 7.069569 CACCAGTGATAGAAAAGTTTTGTACG 58.930 38.462 5.36 0.00 0.00 3.67
224 225 6.204108 ACCAGTGATAGAAAAGTTTTGTACGG 59.796 38.462 5.36 6.05 0.00 4.02
225 226 6.204108 CCAGTGATAGAAAAGTTTTGTACGGT 59.796 38.462 5.36 0.00 0.00 4.83
226 227 7.255001 CCAGTGATAGAAAAGTTTTGTACGGTT 60.255 37.037 5.36 0.00 0.00 4.44
227 228 7.586300 CAGTGATAGAAAAGTTTTGTACGGTTG 59.414 37.037 5.36 1.03 0.00 3.77
228 229 6.358822 GTGATAGAAAAGTTTTGTACGGTTGC 59.641 38.462 5.36 0.00 0.00 4.17
229 230 3.687200 AGAAAAGTTTTGTACGGTTGCG 58.313 40.909 5.36 0.00 0.00 4.85
230 231 3.127376 AGAAAAGTTTTGTACGGTTGCGT 59.873 39.130 5.36 0.00 0.00 5.24
231 232 2.461897 AAGTTTTGTACGGTTGCGTG 57.538 45.000 0.00 0.00 0.00 5.34
232 233 0.658897 AGTTTTGTACGGTTGCGTGG 59.341 50.000 0.00 0.00 0.00 4.94
233 234 0.656785 GTTTTGTACGGTTGCGTGGA 59.343 50.000 0.00 0.00 0.00 4.02
234 235 1.264826 GTTTTGTACGGTTGCGTGGAT 59.735 47.619 0.00 0.00 0.00 3.41
235 236 1.595466 TTTGTACGGTTGCGTGGATT 58.405 45.000 0.00 0.00 0.00 3.01
236 237 1.149987 TTGTACGGTTGCGTGGATTC 58.850 50.000 0.00 0.00 0.00 2.52
237 238 0.033642 TGTACGGTTGCGTGGATTCA 59.966 50.000 0.00 0.00 0.00 2.57
238 239 1.149987 GTACGGTTGCGTGGATTCAA 58.850 50.000 0.00 0.00 0.00 2.69
239 240 1.735571 GTACGGTTGCGTGGATTCAAT 59.264 47.619 0.00 0.00 0.00 2.57
240 241 0.802494 ACGGTTGCGTGGATTCAATC 59.198 50.000 0.00 0.00 0.00 2.67
241 242 1.086696 CGGTTGCGTGGATTCAATCT 58.913 50.000 0.00 0.00 0.00 2.40
242 243 2.276201 CGGTTGCGTGGATTCAATCTA 58.724 47.619 0.00 0.00 0.00 1.98
243 244 2.030457 CGGTTGCGTGGATTCAATCTAC 59.970 50.000 3.79 3.79 37.40 2.59
249 250 3.771577 GTGGATTCAATCTACGGGGAT 57.228 47.619 0.00 0.00 31.06 3.85
250 251 4.884668 GTGGATTCAATCTACGGGGATA 57.115 45.455 0.00 0.00 31.06 2.59
251 252 4.566987 GTGGATTCAATCTACGGGGATAC 58.433 47.826 0.00 0.00 31.06 2.24
252 253 4.039973 GTGGATTCAATCTACGGGGATACA 59.960 45.833 0.00 0.00 31.74 2.29
253 254 4.844085 TGGATTCAATCTACGGGGATACAT 59.156 41.667 0.00 0.00 39.74 2.29
254 255 5.178797 GGATTCAATCTACGGGGATACATG 58.821 45.833 0.00 0.00 39.74 3.21
255 256 5.046591 GGATTCAATCTACGGGGATACATGA 60.047 44.000 0.00 0.00 39.74 3.07
256 257 5.468540 TTCAATCTACGGGGATACATGAG 57.531 43.478 0.00 0.00 39.74 2.90
257 258 3.832490 TCAATCTACGGGGATACATGAGG 59.168 47.826 0.00 0.00 39.74 3.86
258 259 3.827817 ATCTACGGGGATACATGAGGA 57.172 47.619 0.00 0.00 39.74 3.71
259 260 3.156288 TCTACGGGGATACATGAGGAG 57.844 52.381 0.00 0.00 39.74 3.69
260 261 1.546476 CTACGGGGATACATGAGGAGC 59.454 57.143 0.00 0.00 39.74 4.70
261 262 0.398522 ACGGGGATACATGAGGAGCA 60.399 55.000 0.00 0.00 39.74 4.26
262 263 0.758734 CGGGGATACATGAGGAGCAA 59.241 55.000 0.00 0.00 39.74 3.91
263 264 1.270518 CGGGGATACATGAGGAGCAAG 60.271 57.143 0.00 0.00 39.74 4.01
264 265 2.050144 GGGGATACATGAGGAGCAAGA 58.950 52.381 0.00 0.00 39.74 3.02
265 266 2.224402 GGGGATACATGAGGAGCAAGAC 60.224 54.545 0.00 0.00 39.74 3.01
266 267 2.546795 GGGATACATGAGGAGCAAGACG 60.547 54.545 0.00 0.00 39.74 4.18
267 268 2.101582 GGATACATGAGGAGCAAGACGT 59.898 50.000 0.00 0.00 0.00 4.34
268 269 2.941453 TACATGAGGAGCAAGACGTC 57.059 50.000 7.70 7.70 0.00 4.34
269 270 0.969149 ACATGAGGAGCAAGACGTCA 59.031 50.000 19.50 0.00 36.77 4.35
270 271 1.067283 ACATGAGGAGCAAGACGTCAG 60.067 52.381 19.50 11.01 36.02 3.51
271 272 0.108424 ATGAGGAGCAAGACGTCAGC 60.108 55.000 19.50 20.42 36.02 4.26
272 273 1.181741 TGAGGAGCAAGACGTCAGCT 61.182 55.000 28.32 28.32 42.17 4.24
273 274 0.811915 GAGGAGCAAGACGTCAGCTA 59.188 55.000 28.11 0.00 39.02 3.32
274 275 0.814457 AGGAGCAAGACGTCAGCTAG 59.186 55.000 28.11 10.90 39.02 3.42
275 276 0.811915 GGAGCAAGACGTCAGCTAGA 59.188 55.000 28.11 0.00 39.02 2.43
276 277 1.468395 GGAGCAAGACGTCAGCTAGAC 60.468 57.143 28.11 19.56 44.02 2.59
581 582 6.092396 ACGTTGTTGCCGATGTAATTGTATTA 59.908 34.615 0.00 0.00 0.00 0.98
635 636 3.735746 GCCATTCCAAACAAGAAAAGACG 59.264 43.478 0.00 0.00 0.00 4.18
737 750 4.082949 CCGCATGTGAGATGCATAATGATT 60.083 41.667 15.08 0.00 44.75 2.57
740 753 6.086871 GCATGTGAGATGCATAATGATTGAG 58.913 40.000 9.90 0.00 44.00 3.02
764 777 5.221722 GGCTCTCCATGTTACCATATTCTCA 60.222 44.000 0.00 0.00 0.00 3.27
827 840 7.201776 GCATGTTACATCCATGTTACCATACAA 60.202 37.037 0.00 0.00 41.38 2.41
864 877 0.824109 AGCTACGTAGATTGCCAGCA 59.176 50.000 26.53 0.00 0.00 4.41
865 878 0.931005 GCTACGTAGATTGCCAGCAC 59.069 55.000 26.53 0.26 0.00 4.40
900 913 1.539388 TCAACCGTACGTGATAACCGT 59.461 47.619 15.21 0.00 42.06 4.83
902 915 3.100817 CAACCGTACGTGATAACCGTAG 58.899 50.000 15.21 0.00 41.04 3.51
948 961 1.635487 CCTCCCTCCTGATTGGTTCAA 59.365 52.381 0.00 0.00 37.07 2.69
949 962 2.243221 CCTCCCTCCTGATTGGTTCAAT 59.757 50.000 0.00 0.00 36.72 2.57
969 982 7.905604 TCAATATATAAAACCCGAGCATCAG 57.094 36.000 0.00 0.00 33.17 2.90
1190 1206 9.977762 GCTAATTTCCATTCAATTTTAAAGCTG 57.022 29.630 0.00 0.00 0.00 4.24
1195 1211 6.877236 TCCATTCAATTTTAAAGCTGGATCC 58.123 36.000 4.20 4.20 0.00 3.36
1383 1413 0.335361 AGTCCCATCCCGTGAGTACT 59.665 55.000 0.00 0.00 0.00 2.73
1397 1436 6.273825 CCGTGAGTACTAATAATTCAGTGCT 58.726 40.000 0.00 5.46 39.95 4.40
1398 1437 6.757010 CCGTGAGTACTAATAATTCAGTGCTT 59.243 38.462 0.00 0.00 37.77 3.91
1423 1462 8.059798 TCTCTTGATTGAATTTTCTTGGATCC 57.940 34.615 4.20 4.20 0.00 3.36
1428 1490 7.965718 TGATTGAATTTTCTTGGATCCTTGTT 58.034 30.769 14.23 0.00 0.00 2.83
1429 1491 7.874016 TGATTGAATTTTCTTGGATCCTTGTTG 59.126 33.333 14.23 0.00 0.00 3.33
1430 1492 6.100404 TGAATTTTCTTGGATCCTTGTTGG 57.900 37.500 14.23 0.00 37.10 3.77
1443 1505 4.016444 TCCTTGTTGGATAATTCAGTGCC 58.984 43.478 0.00 0.00 40.56 5.01
1444 1506 3.763360 CCTTGTTGGATAATTCAGTGCCA 59.237 43.478 0.00 0.00 38.35 4.92
1445 1507 4.380867 CCTTGTTGGATAATTCAGTGCCAC 60.381 45.833 0.00 0.00 38.35 5.01
1446 1508 2.746904 TGTTGGATAATTCAGTGCCACG 59.253 45.455 0.00 0.00 0.00 4.94
1447 1509 2.036958 TGGATAATTCAGTGCCACGG 57.963 50.000 0.00 0.00 0.00 4.94
1448 1510 1.557371 TGGATAATTCAGTGCCACGGA 59.443 47.619 0.00 0.00 0.00 4.69
1449 1511 2.213499 GGATAATTCAGTGCCACGGAG 58.787 52.381 0.00 0.00 0.00 4.63
1450 1512 1.599542 GATAATTCAGTGCCACGGAGC 59.400 52.381 0.00 0.00 0.00 4.70
1451 1513 0.323302 TAATTCAGTGCCACGGAGCA 59.677 50.000 0.00 0.00 41.46 4.26
1471 1533 2.816411 ACGAGGGTGAAGGAAGTATCA 58.184 47.619 0.00 0.00 0.00 2.15
1472 1534 3.170717 ACGAGGGTGAAGGAAGTATCAA 58.829 45.455 0.00 0.00 0.00 2.57
1473 1535 3.581332 ACGAGGGTGAAGGAAGTATCAAA 59.419 43.478 0.00 0.00 0.00 2.69
1474 1536 4.225267 ACGAGGGTGAAGGAAGTATCAAAT 59.775 41.667 0.00 0.00 0.00 2.32
1478 1540 6.525629 AGGGTGAAGGAAGTATCAAATATCG 58.474 40.000 0.00 0.00 0.00 2.92
1495 1557 3.770263 ATCGTTGCTCAAATCACATGG 57.230 42.857 0.00 0.00 0.00 3.66
1497 1559 3.346315 TCGTTGCTCAAATCACATGGAT 58.654 40.909 0.00 0.00 38.05 3.41
1498 1560 3.127376 TCGTTGCTCAAATCACATGGATG 59.873 43.478 0.00 0.00 36.02 3.51
1499 1561 3.732774 CGTTGCTCAAATCACATGGATGG 60.733 47.826 0.00 0.00 36.02 3.51
1862 1942 1.847968 AGGACCAAGGACAGGGGTG 60.848 63.158 0.00 0.00 34.39 4.61
1902 1982 2.375766 GCTGTCTTCCGAGTGCACG 61.376 63.158 12.01 0.00 0.00 5.34
1973 2053 3.998672 CGGTACCGTGTGCCTGGT 61.999 66.667 26.39 0.00 42.34 4.00
1980 2060 1.671742 CGTGTGCCTGGTTCCTACT 59.328 57.895 0.00 0.00 0.00 2.57
2046 2126 7.095910 ACATCACCATCTCATCGATCTTAATC 58.904 38.462 0.00 0.00 0.00 1.75
2138 2218 1.035932 GCAGCACCAGCATCAAGGAT 61.036 55.000 0.00 0.00 45.49 3.24
2176 2256 2.594303 CGCCCTGGTGAACAAGCA 60.594 61.111 0.00 0.00 34.41 3.91
2183 2263 1.822186 GGTGAACAAGCACACCGGT 60.822 57.895 0.00 0.00 45.16 5.28
2245 2326 9.205719 TGTAAGCTTATAACATGTTCACGTTAA 57.794 29.630 15.85 6.12 31.74 2.01
2338 3087 0.179045 GCTACGACCCGGACTACCTA 60.179 60.000 0.73 0.00 0.00 3.08
2359 3108 2.734591 GAGTCGGTGCTGTGGACA 59.265 61.111 0.00 0.00 33.18 4.02
2440 3189 3.916392 CTTTGACGCCCTCGACGCT 62.916 63.158 0.00 0.00 39.41 5.07
2626 5915 3.353557 GGTAGTCCCACAGGATTTTTCC 58.646 50.000 0.00 0.00 46.41 3.13
2627 5916 3.245122 GGTAGTCCCACAGGATTTTTCCA 60.245 47.826 0.00 0.00 46.41 3.53
2628 5917 3.833559 AGTCCCACAGGATTTTTCCAT 57.166 42.857 0.00 0.00 46.41 3.41
2629 5918 3.434309 AGTCCCACAGGATTTTTCCATG 58.566 45.455 0.00 0.00 46.41 3.66
2630 5919 2.497273 GTCCCACAGGATTTTTCCATGG 59.503 50.000 4.97 4.97 46.41 3.66
2631 5920 2.111613 TCCCACAGGATTTTTCCATGGT 59.888 45.455 12.58 0.00 37.19 3.55
2632 5921 2.905736 CCCACAGGATTTTTCCATGGTT 59.094 45.455 12.58 0.00 36.88 3.67
2633 5922 3.306919 CCCACAGGATTTTTCCATGGTTG 60.307 47.826 12.58 1.83 36.88 3.77
2634 5923 3.328505 CACAGGATTTTTCCATGGTTGC 58.671 45.455 12.58 0.00 0.00 4.17
2635 5924 3.007182 CACAGGATTTTTCCATGGTTGCT 59.993 43.478 12.58 0.93 0.00 3.91
2636 5925 3.007182 ACAGGATTTTTCCATGGTTGCTG 59.993 43.478 12.58 14.49 0.00 4.41
2637 5926 3.258872 CAGGATTTTTCCATGGTTGCTGA 59.741 43.478 12.58 0.00 0.00 4.26
2638 5927 3.903090 AGGATTTTTCCATGGTTGCTGAA 59.097 39.130 12.58 0.00 0.00 3.02
2639 5928 4.347583 AGGATTTTTCCATGGTTGCTGAAA 59.652 37.500 12.58 0.32 0.00 2.69
2640 5929 4.452114 GGATTTTTCCATGGTTGCTGAAAC 59.548 41.667 12.58 0.00 38.12 2.78
2641 5930 4.478206 TTTTTCCATGGTTGCTGAAACA 57.522 36.364 12.58 0.00 40.86 2.83
2642 5931 3.731652 TTTCCATGGTTGCTGAAACAG 57.268 42.857 12.58 0.00 40.86 3.16
2654 5943 2.079925 CTGAAACAGCCCTGTCTAAGC 58.920 52.381 0.79 0.00 44.13 3.09
2655 5944 1.699634 TGAAACAGCCCTGTCTAAGCT 59.300 47.619 0.79 0.00 44.13 3.74
2656 5945 2.903784 TGAAACAGCCCTGTCTAAGCTA 59.096 45.455 0.79 0.00 44.13 3.32
2666 5955 5.063880 CCCTGTCTAAGCTAGTGTGTTTTT 58.936 41.667 0.00 0.00 0.00 1.94
2691 5980 2.024369 TGTGGTGGATCACTAGCTAGGA 60.024 50.000 24.35 17.82 38.40 2.94
2694 5983 2.034812 GGTGGATCACTAGCTAGGAACG 59.965 54.545 24.35 10.05 34.40 3.95
2702 5991 6.132791 TCACTAGCTAGGAACGTCTATTTG 57.867 41.667 24.35 9.13 0.00 2.32
2710 5999 2.411031 GGAACGTCTATTTGCGTGTGTG 60.411 50.000 0.00 0.00 41.42 3.82
2733 6022 6.901887 GTGCGTTGATTAATCTGTATCTTGTG 59.098 38.462 16.24 0.00 0.00 3.33
2735 6024 7.762159 TGCGTTGATTAATCTGTATCTTGTGTA 59.238 33.333 16.24 0.00 0.00 2.90
2810 6100 7.044181 TGTCAAGGACACAAAATTAAATTGCA 58.956 30.769 0.00 0.00 37.67 4.08
2814 6104 6.344500 AGGACACAAAATTAAATTGCACACA 58.656 32.000 0.00 0.00 0.00 3.72
2821 6111 9.662545 ACAAAATTAAATTGCACACAAAATAGC 57.337 25.926 0.00 0.00 39.77 2.97
2835 6125 1.972872 AATAGCCACCATAGCTGCAC 58.027 50.000 1.02 0.00 41.71 4.57
2840 6130 2.705658 AGCCACCATAGCTGCACTATAA 59.294 45.455 1.02 0.00 39.71 0.98
2851 6141 0.750850 GCACTATAACTGCCTCGGGA 59.249 55.000 0.00 0.00 0.00 5.14
2901 6191 3.546815 CGATGCGAAATCCTCCACAAATC 60.547 47.826 0.00 0.00 0.00 2.17
2920 6210 7.714813 CACAAATCCCTAAACAACTCCAAAATT 59.285 33.333 0.00 0.00 0.00 1.82
2924 6214 6.071984 TCCCTAAACAACTCCAAAATTAGCA 58.928 36.000 0.00 0.00 0.00 3.49
2928 6218 5.852282 AACAACTCCAAAATTAGCACACT 57.148 34.783 0.00 0.00 0.00 3.55
2931 6221 5.359576 ACAACTCCAAAATTAGCACACTCAA 59.640 36.000 0.00 0.00 0.00 3.02
2933 6223 6.463995 ACTCCAAAATTAGCACACTCAAAA 57.536 33.333 0.00 0.00 0.00 2.44
2957 6247 9.579932 AAAAACTCTAGAAATCATCACTTTCCT 57.420 29.630 0.00 0.00 33.93 3.36
2958 6248 8.785329 AAACTCTAGAAATCATCACTTTCCTC 57.215 34.615 0.00 0.00 33.93 3.71
2959 6249 6.883744 ACTCTAGAAATCATCACTTTCCTCC 58.116 40.000 0.00 0.00 33.93 4.30
2960 6250 6.671779 ACTCTAGAAATCATCACTTTCCTCCT 59.328 38.462 0.00 0.00 33.93 3.69
2961 6251 7.118496 TCTAGAAATCATCACTTTCCTCCTC 57.882 40.000 0.00 0.00 33.93 3.71
2962 6252 5.109500 AGAAATCATCACTTTCCTCCTCC 57.891 43.478 0.00 0.00 33.93 4.30
2963 6253 3.941704 AATCATCACTTTCCTCCTCCC 57.058 47.619 0.00 0.00 0.00 4.30
2964 6254 1.584724 TCATCACTTTCCTCCTCCCC 58.415 55.000 0.00 0.00 0.00 4.81
2965 6255 1.203428 TCATCACTTTCCTCCTCCCCA 60.203 52.381 0.00 0.00 0.00 4.96
2966 6256 1.635487 CATCACTTTCCTCCTCCCCAA 59.365 52.381 0.00 0.00 0.00 4.12
2967 6257 1.362224 TCACTTTCCTCCTCCCCAAG 58.638 55.000 0.00 0.00 0.00 3.61
2968 6258 1.132527 TCACTTTCCTCCTCCCCAAGA 60.133 52.381 0.00 0.00 0.00 3.02
2969 6259 1.705186 CACTTTCCTCCTCCCCAAGAA 59.295 52.381 0.00 0.00 0.00 2.52
2970 6260 2.108250 CACTTTCCTCCTCCCCAAGAAA 59.892 50.000 0.00 0.00 0.00 2.52
2971 6261 2.789399 ACTTTCCTCCTCCCCAAGAAAA 59.211 45.455 0.00 0.00 0.00 2.29
2972 6262 2.971901 TTCCTCCTCCCCAAGAAAAC 57.028 50.000 0.00 0.00 0.00 2.43
2973 6263 1.827792 TCCTCCTCCCCAAGAAAACA 58.172 50.000 0.00 0.00 0.00 2.83
2974 6264 1.423921 TCCTCCTCCCCAAGAAAACAC 59.576 52.381 0.00 0.00 0.00 3.32
2975 6265 1.425448 CCTCCTCCCCAAGAAAACACT 59.575 52.381 0.00 0.00 0.00 3.55
2976 6266 2.553247 CCTCCTCCCCAAGAAAACACTC 60.553 54.545 0.00 0.00 0.00 3.51
2977 6267 1.423921 TCCTCCCCAAGAAAACACTCC 59.576 52.381 0.00 0.00 0.00 3.85
2978 6268 1.547901 CCTCCCCAAGAAAACACTCCC 60.548 57.143 0.00 0.00 0.00 4.30
2979 6269 1.144913 CTCCCCAAGAAAACACTCCCA 59.855 52.381 0.00 0.00 0.00 4.37
2980 6270 1.144913 TCCCCAAGAAAACACTCCCAG 59.855 52.381 0.00 0.00 0.00 4.45
2981 6271 1.144913 CCCCAAGAAAACACTCCCAGA 59.855 52.381 0.00 0.00 0.00 3.86
2982 6272 2.230660 CCCAAGAAAACACTCCCAGAC 58.769 52.381 0.00 0.00 0.00 3.51
2983 6273 1.873591 CCAAGAAAACACTCCCAGACG 59.126 52.381 0.00 0.00 0.00 4.18
2984 6274 2.484770 CCAAGAAAACACTCCCAGACGA 60.485 50.000 0.00 0.00 0.00 4.20
2985 6275 3.403038 CAAGAAAACACTCCCAGACGAT 58.597 45.455 0.00 0.00 0.00 3.73
2986 6276 3.771577 AGAAAACACTCCCAGACGATT 57.228 42.857 0.00 0.00 0.00 3.34
2987 6277 4.884668 AGAAAACACTCCCAGACGATTA 57.115 40.909 0.00 0.00 0.00 1.75
2988 6278 4.822026 AGAAAACACTCCCAGACGATTAG 58.178 43.478 0.00 0.00 0.00 1.73
2989 6279 3.611766 AAACACTCCCAGACGATTAGG 57.388 47.619 0.00 0.00 0.00 2.69
2990 6280 2.233305 ACACTCCCAGACGATTAGGT 57.767 50.000 0.00 0.00 0.00 3.08
2991 6281 2.537143 ACACTCCCAGACGATTAGGTT 58.463 47.619 0.00 0.00 0.00 3.50
2992 6282 2.904434 ACACTCCCAGACGATTAGGTTT 59.096 45.455 0.00 0.00 0.00 3.27
2993 6283 3.056035 ACACTCCCAGACGATTAGGTTTC 60.056 47.826 0.00 0.00 0.00 2.78
2994 6284 2.500504 ACTCCCAGACGATTAGGTTTCC 59.499 50.000 0.00 0.00 0.00 3.13
2995 6285 2.766828 CTCCCAGACGATTAGGTTTCCT 59.233 50.000 0.00 0.00 37.71 3.36
2996 6286 3.178865 TCCCAGACGATTAGGTTTCCTT 58.821 45.455 0.00 0.00 34.61 3.36
2997 6287 3.197116 TCCCAGACGATTAGGTTTCCTTC 59.803 47.826 0.00 0.00 34.61 3.46
2998 6288 3.197983 CCCAGACGATTAGGTTTCCTTCT 59.802 47.826 0.00 0.00 34.61 2.85
2999 6289 4.434520 CCAGACGATTAGGTTTCCTTCTC 58.565 47.826 0.00 0.00 34.61 2.87
3000 6290 4.160626 CCAGACGATTAGGTTTCCTTCTCT 59.839 45.833 0.00 0.00 34.61 3.10
3001 6291 5.344884 CAGACGATTAGGTTTCCTTCTCTC 58.655 45.833 0.00 0.00 34.61 3.20
3002 6292 4.096682 AGACGATTAGGTTTCCTTCTCTCG 59.903 45.833 0.00 0.00 34.61 4.04
3003 6293 3.762823 ACGATTAGGTTTCCTTCTCTCGT 59.237 43.478 0.00 0.00 34.61 4.18
3004 6294 4.946157 ACGATTAGGTTTCCTTCTCTCGTA 59.054 41.667 0.00 0.00 33.66 3.43
3005 6295 5.066246 ACGATTAGGTTTCCTTCTCTCGTAG 59.934 44.000 0.00 0.00 33.66 3.51
3006 6296 5.505985 CGATTAGGTTTCCTTCTCTCGTAGG 60.506 48.000 0.00 0.00 34.61 3.18
3007 6297 1.826096 AGGTTTCCTTCTCTCGTAGGC 59.174 52.381 0.00 0.00 0.00 3.93
3008 6298 1.549170 GGTTTCCTTCTCTCGTAGGCA 59.451 52.381 0.00 0.00 0.00 4.75
3009 6299 2.608268 GTTTCCTTCTCTCGTAGGCAC 58.392 52.381 0.00 0.00 0.00 5.01
3010 6300 1.183549 TTCCTTCTCTCGTAGGCACC 58.816 55.000 0.00 0.00 0.00 5.01
3011 6301 0.683504 TCCTTCTCTCGTAGGCACCC 60.684 60.000 0.00 0.00 0.00 4.61
3012 6302 1.677637 CCTTCTCTCGTAGGCACCCC 61.678 65.000 0.00 0.00 0.00 4.95
3013 6303 0.684805 CTTCTCTCGTAGGCACCCCT 60.685 60.000 0.00 0.00 45.61 4.79
3014 6304 0.970937 TTCTCTCGTAGGCACCCCTG 60.971 60.000 0.00 0.00 42.90 4.45
3015 6305 3.075005 TCTCGTAGGCACCCCTGC 61.075 66.667 0.00 0.00 42.90 4.85
3238 6605 1.207089 CCCCGCTGTCTGTCTTGATTA 59.793 52.381 0.00 0.00 0.00 1.75
3287 6654 4.942944 TCAGTAGGAATACTGTCTCCCAA 58.057 43.478 13.50 0.00 45.61 4.12
3303 6670 2.764572 TCCCAAGTTCGATCCTAGTTCC 59.235 50.000 0.00 0.00 0.00 3.62
3308 6675 3.288964 AGTTCGATCCTAGTTCCGATGT 58.711 45.455 0.00 0.00 0.00 3.06
3318 6685 4.158025 CCTAGTTCCGATGTTGTGTCTAGT 59.842 45.833 0.00 0.00 0.00 2.57
3324 6691 5.647589 TCCGATGTTGTGTCTAGTATTGTC 58.352 41.667 0.00 0.00 0.00 3.18
3326 6693 4.499399 CGATGTTGTGTCTAGTATTGTCGG 59.501 45.833 0.00 0.00 0.00 4.79
3339 6706 3.753294 ATTGTCGGAGGATGTATGGAC 57.247 47.619 0.00 0.00 0.00 4.02
3358 6725 1.471684 ACGTGTGTCTCCGTCTAATCC 59.528 52.381 0.00 0.00 30.05 3.01
3363 6730 0.384669 GTCTCCGTCTAATCCCGTGG 59.615 60.000 0.00 0.00 0.00 4.94
3377 6744 0.734889 CCGTGGGATTCTGTTGATGC 59.265 55.000 0.00 0.00 0.00 3.91
3393 6760 0.912486 ATGCTGGTCTTAGGTGGGTC 59.088 55.000 0.00 0.00 0.00 4.46
3411 6778 4.104102 TGGGTCTGTTTGGATGTAGTCTTT 59.896 41.667 0.00 0.00 0.00 2.52
3415 6782 6.039382 GGTCTGTTTGGATGTAGTCTTTGTTT 59.961 38.462 0.00 0.00 0.00 2.83
3420 6787 5.749596 TGGATGTAGTCTTTGTTTGTGTG 57.250 39.130 0.00 0.00 0.00 3.82
3425 6792 7.387948 GGATGTAGTCTTTGTTTGTGTGTCTAT 59.612 37.037 0.00 0.00 0.00 1.98
3427 6794 8.812147 TGTAGTCTTTGTTTGTGTGTCTATAG 57.188 34.615 0.00 0.00 0.00 1.31
3446 6813 7.596995 GTCTATAGGTTTGATCCTTTCGATCTG 59.403 40.741 0.00 0.00 46.65 2.90
3447 6814 4.559862 AGGTTTGATCCTTTCGATCTGT 57.440 40.909 1.77 0.00 46.65 3.41
3486 6864 3.695606 GGTCGCTGGTCCTGCTGA 61.696 66.667 17.64 13.38 0.00 4.26
3489 6867 2.125753 CGCTGGTCCTGCTGAGTC 60.126 66.667 17.64 0.00 0.00 3.36
3491 6869 1.079266 GCTGGTCCTGCTGAGTCTG 60.079 63.158 13.24 0.00 0.00 3.51
3494 6872 0.178950 TGGTCCTGCTGAGTCTGAGT 60.179 55.000 0.47 0.00 0.00 3.41
3496 6874 1.748493 GGTCCTGCTGAGTCTGAGTAG 59.252 57.143 0.47 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.975168 ATACATCGGGTTAGGTATGCC 57.025 47.619 0.00 0.00 0.00 4.40
1 2 5.061179 ACAAATACATCGGGTTAGGTATGC 58.939 41.667 0.00 0.00 0.00 3.14
2 3 7.281324 TCAAACAAATACATCGGGTTAGGTATG 59.719 37.037 0.00 0.00 0.00 2.39
3 4 7.340256 TCAAACAAATACATCGGGTTAGGTAT 58.660 34.615 0.00 0.00 0.00 2.73
4 5 6.709281 TCAAACAAATACATCGGGTTAGGTA 58.291 36.000 0.00 0.00 0.00 3.08
5 6 5.562635 TCAAACAAATACATCGGGTTAGGT 58.437 37.500 0.00 0.00 0.00 3.08
6 7 5.065988 CCTCAAACAAATACATCGGGTTAGG 59.934 44.000 0.00 0.00 0.00 2.69
7 8 5.065988 CCCTCAAACAAATACATCGGGTTAG 59.934 44.000 0.00 0.00 0.00 2.34
8 9 4.944930 CCCTCAAACAAATACATCGGGTTA 59.055 41.667 0.00 0.00 0.00 2.85
9 10 3.761752 CCCTCAAACAAATACATCGGGTT 59.238 43.478 0.00 0.00 0.00 4.11
10 11 3.009695 TCCCTCAAACAAATACATCGGGT 59.990 43.478 0.00 0.00 0.00 5.28
11 12 3.616219 TCCCTCAAACAAATACATCGGG 58.384 45.455 0.00 0.00 0.00 5.14
12 13 4.024893 CGATCCCTCAAACAAATACATCGG 60.025 45.833 0.00 0.00 0.00 4.18
13 14 4.808895 TCGATCCCTCAAACAAATACATCG 59.191 41.667 0.00 0.00 33.54 3.84
14 15 6.293626 CCATCGATCCCTCAAACAAATACATC 60.294 42.308 0.00 0.00 0.00 3.06
15 16 5.532406 CCATCGATCCCTCAAACAAATACAT 59.468 40.000 0.00 0.00 0.00 2.29
16 17 4.881273 CCATCGATCCCTCAAACAAATACA 59.119 41.667 0.00 0.00 0.00 2.29
17 18 5.123227 TCCATCGATCCCTCAAACAAATAC 58.877 41.667 0.00 0.00 0.00 1.89
18 19 5.366482 TCCATCGATCCCTCAAACAAATA 57.634 39.130 0.00 0.00 0.00 1.40
19 20 4.235079 TCCATCGATCCCTCAAACAAAT 57.765 40.909 0.00 0.00 0.00 2.32
20 21 3.712016 TCCATCGATCCCTCAAACAAA 57.288 42.857 0.00 0.00 0.00 2.83
21 22 3.712016 TTCCATCGATCCCTCAAACAA 57.288 42.857 0.00 0.00 0.00 2.83
22 23 3.199727 TCATTCCATCGATCCCTCAAACA 59.800 43.478 0.00 0.00 0.00 2.83
23 24 3.561725 GTCATTCCATCGATCCCTCAAAC 59.438 47.826 0.00 0.00 0.00 2.93
24 25 3.455910 AGTCATTCCATCGATCCCTCAAA 59.544 43.478 0.00 0.00 0.00 2.69
25 26 3.041211 AGTCATTCCATCGATCCCTCAA 58.959 45.455 0.00 0.00 0.00 3.02
26 27 2.682594 AGTCATTCCATCGATCCCTCA 58.317 47.619 0.00 0.00 0.00 3.86
27 28 3.760580 AAGTCATTCCATCGATCCCTC 57.239 47.619 0.00 0.00 0.00 4.30
28 29 3.455910 TCAAAGTCATTCCATCGATCCCT 59.544 43.478 0.00 0.00 0.00 4.20
29 30 3.808728 TCAAAGTCATTCCATCGATCCC 58.191 45.455 0.00 0.00 0.00 3.85
30 31 6.382869 AATTCAAAGTCATTCCATCGATCC 57.617 37.500 0.00 0.00 0.00 3.36
31 32 8.397906 TGTTAATTCAAAGTCATTCCATCGATC 58.602 33.333 0.00 0.00 0.00 3.69
32 33 8.279970 TGTTAATTCAAAGTCATTCCATCGAT 57.720 30.769 0.00 0.00 0.00 3.59
33 34 7.680442 TGTTAATTCAAAGTCATTCCATCGA 57.320 32.000 0.00 0.00 0.00 3.59
34 35 8.183536 TGATGTTAATTCAAAGTCATTCCATCG 58.816 33.333 0.00 0.00 30.57 3.84
36 37 9.811995 CATGATGTTAATTCAAAGTCATTCCAT 57.188 29.630 0.00 0.00 0.00 3.41
37 38 8.805175 ACATGATGTTAATTCAAAGTCATTCCA 58.195 29.630 0.00 0.00 0.00 3.53
57 58 9.872721 TGCAATTTTATTTCACACATACATGAT 57.127 25.926 0.00 0.00 0.00 2.45
58 59 9.872721 ATGCAATTTTATTTCACACATACATGA 57.127 25.926 0.00 0.00 0.00 3.07
61 62 9.486497 ACAATGCAATTTTATTTCACACATACA 57.514 25.926 0.00 0.00 31.22 2.29
64 65 9.709495 ACTACAATGCAATTTTATTTCACACAT 57.291 25.926 0.00 0.00 31.22 3.21
65 66 9.539825 AACTACAATGCAATTTTATTTCACACA 57.460 25.926 0.00 0.00 31.22 3.72
66 67 9.796062 CAACTACAATGCAATTTTATTTCACAC 57.204 29.630 0.00 0.00 31.22 3.82
67 68 9.539825 ACAACTACAATGCAATTTTATTTCACA 57.460 25.926 0.00 0.00 31.22 3.58
74 75 9.352784 GCAAGATACAACTACAATGCAATTTTA 57.647 29.630 0.00 0.00 31.22 1.52
75 76 7.331687 GGCAAGATACAACTACAATGCAATTTT 59.668 33.333 0.00 0.00 31.22 1.82
76 77 6.813152 GGCAAGATACAACTACAATGCAATTT 59.187 34.615 0.00 0.00 31.22 1.82
77 78 6.153340 AGGCAAGATACAACTACAATGCAATT 59.847 34.615 0.00 0.00 36.63 2.32
78 79 5.653769 AGGCAAGATACAACTACAATGCAAT 59.346 36.000 0.00 0.00 34.37 3.56
79 80 5.009631 AGGCAAGATACAACTACAATGCAA 58.990 37.500 0.00 0.00 34.37 4.08
80 81 4.588899 AGGCAAGATACAACTACAATGCA 58.411 39.130 0.00 0.00 34.37 3.96
81 82 5.567138 AAGGCAAGATACAACTACAATGC 57.433 39.130 0.00 0.00 0.00 3.56
82 83 7.119699 TGAGAAAGGCAAGATACAACTACAATG 59.880 37.037 0.00 0.00 0.00 2.82
83 84 7.119846 GTGAGAAAGGCAAGATACAACTACAAT 59.880 37.037 0.00 0.00 0.00 2.71
84 85 6.426937 GTGAGAAAGGCAAGATACAACTACAA 59.573 38.462 0.00 0.00 0.00 2.41
85 86 5.932303 GTGAGAAAGGCAAGATACAACTACA 59.068 40.000 0.00 0.00 0.00 2.74
86 87 5.062308 CGTGAGAAAGGCAAGATACAACTAC 59.938 44.000 0.00 0.00 0.00 2.73
87 88 5.168569 CGTGAGAAAGGCAAGATACAACTA 58.831 41.667 0.00 0.00 0.00 2.24
88 89 3.997021 CGTGAGAAAGGCAAGATACAACT 59.003 43.478 0.00 0.00 0.00 3.16
89 90 3.746492 ACGTGAGAAAGGCAAGATACAAC 59.254 43.478 0.00 0.00 0.00 3.32
90 91 4.002906 ACGTGAGAAAGGCAAGATACAA 57.997 40.909 0.00 0.00 0.00 2.41
91 92 3.678056 ACGTGAGAAAGGCAAGATACA 57.322 42.857 0.00 0.00 0.00 2.29
92 93 3.371285 GGAACGTGAGAAAGGCAAGATAC 59.629 47.826 0.00 0.00 0.00 2.24
93 94 3.260884 AGGAACGTGAGAAAGGCAAGATA 59.739 43.478 0.00 0.00 0.00 1.98
94 95 2.039084 AGGAACGTGAGAAAGGCAAGAT 59.961 45.455 0.00 0.00 0.00 2.40
95 96 1.416401 AGGAACGTGAGAAAGGCAAGA 59.584 47.619 0.00 0.00 0.00 3.02
96 97 1.801178 GAGGAACGTGAGAAAGGCAAG 59.199 52.381 0.00 0.00 0.00 4.01
97 98 1.872237 CGAGGAACGTGAGAAAGGCAA 60.872 52.381 0.00 0.00 37.22 4.52
98 99 0.319555 CGAGGAACGTGAGAAAGGCA 60.320 55.000 0.00 0.00 37.22 4.75
99 100 0.038526 TCGAGGAACGTGAGAAAGGC 60.039 55.000 0.00 0.00 43.13 4.35
100 101 1.669211 GGTCGAGGAACGTGAGAAAGG 60.669 57.143 0.00 0.00 43.13 3.11
101 102 1.669211 GGGTCGAGGAACGTGAGAAAG 60.669 57.143 0.00 0.00 43.13 2.62
102 103 0.316204 GGGTCGAGGAACGTGAGAAA 59.684 55.000 0.00 0.00 43.13 2.52
103 104 0.538977 AGGGTCGAGGAACGTGAGAA 60.539 55.000 0.00 0.00 43.13 2.87
104 105 1.074423 AGGGTCGAGGAACGTGAGA 59.926 57.895 0.00 0.00 43.13 3.27
105 106 1.213013 CAGGGTCGAGGAACGTGAG 59.787 63.158 0.00 0.00 37.32 3.51
106 107 2.927580 GCAGGGTCGAGGAACGTGA 61.928 63.158 7.47 0.00 37.32 4.35
107 108 2.432628 GCAGGGTCGAGGAACGTG 60.433 66.667 0.00 0.00 43.13 4.49
108 109 2.915659 TGCAGGGTCGAGGAACGT 60.916 61.111 0.00 0.00 43.13 3.99
109 110 1.949847 ATCTGCAGGGTCGAGGAACG 61.950 60.000 15.13 0.00 44.09 3.95
110 111 1.112113 TATCTGCAGGGTCGAGGAAC 58.888 55.000 15.13 0.00 0.00 3.62
111 112 1.112113 GTATCTGCAGGGTCGAGGAA 58.888 55.000 15.13 0.00 0.00 3.36
112 113 0.755698 GGTATCTGCAGGGTCGAGGA 60.756 60.000 15.13 0.00 0.00 3.71
113 114 1.742768 GGTATCTGCAGGGTCGAGG 59.257 63.158 15.13 0.00 0.00 4.63
114 115 1.043116 TGGGTATCTGCAGGGTCGAG 61.043 60.000 15.13 0.00 0.00 4.04
115 116 0.616395 TTGGGTATCTGCAGGGTCGA 60.616 55.000 15.13 0.00 0.00 4.20
116 117 0.179073 CTTGGGTATCTGCAGGGTCG 60.179 60.000 15.13 0.00 0.00 4.79
117 118 1.204146 TCTTGGGTATCTGCAGGGTC 58.796 55.000 15.13 4.20 0.00 4.46
118 119 1.771255 GATCTTGGGTATCTGCAGGGT 59.229 52.381 15.13 5.80 0.00 4.34
119 120 1.770658 TGATCTTGGGTATCTGCAGGG 59.229 52.381 15.13 0.00 0.00 4.45
120 121 2.171237 TGTGATCTTGGGTATCTGCAGG 59.829 50.000 15.13 0.00 0.00 4.85
121 122 3.133542 TCTGTGATCTTGGGTATCTGCAG 59.866 47.826 7.63 7.63 32.99 4.41
122 123 3.106827 TCTGTGATCTTGGGTATCTGCA 58.893 45.455 0.00 0.00 0.00 4.41
123 124 3.133721 ACTCTGTGATCTTGGGTATCTGC 59.866 47.826 0.00 0.00 0.00 4.26
124 125 5.350504 AACTCTGTGATCTTGGGTATCTG 57.649 43.478 0.00 0.00 0.00 2.90
125 126 5.485353 TCAAACTCTGTGATCTTGGGTATCT 59.515 40.000 0.00 0.00 0.00 1.98
126 127 5.734720 TCAAACTCTGTGATCTTGGGTATC 58.265 41.667 0.00 0.00 0.00 2.24
127 128 5.485353 TCTCAAACTCTGTGATCTTGGGTAT 59.515 40.000 0.00 0.00 0.00 2.73
128 129 4.838423 TCTCAAACTCTGTGATCTTGGGTA 59.162 41.667 0.00 0.00 0.00 3.69
129 130 3.648067 TCTCAAACTCTGTGATCTTGGGT 59.352 43.478 0.00 0.00 0.00 4.51
130 131 3.999663 GTCTCAAACTCTGTGATCTTGGG 59.000 47.826 0.00 0.00 30.58 4.12
131 132 4.450419 GTGTCTCAAACTCTGTGATCTTGG 59.550 45.833 0.00 0.00 30.58 3.61
132 133 4.149571 CGTGTCTCAAACTCTGTGATCTTG 59.850 45.833 0.00 0.00 30.58 3.02
133 134 4.038042 TCGTGTCTCAAACTCTGTGATCTT 59.962 41.667 0.00 0.00 30.58 2.40
134 135 3.570125 TCGTGTCTCAAACTCTGTGATCT 59.430 43.478 0.00 0.00 30.58 2.75
135 136 3.902150 TCGTGTCTCAAACTCTGTGATC 58.098 45.455 0.00 0.00 30.58 2.92
136 137 3.305676 CCTCGTGTCTCAAACTCTGTGAT 60.306 47.826 0.00 0.00 30.58 3.06
137 138 2.034685 CCTCGTGTCTCAAACTCTGTGA 59.965 50.000 0.00 0.00 0.00 3.58
138 139 2.034685 TCCTCGTGTCTCAAACTCTGTG 59.965 50.000 0.00 0.00 0.00 3.66
139 140 2.294791 CTCCTCGTGTCTCAAACTCTGT 59.705 50.000 0.00 0.00 0.00 3.41
140 141 2.352225 CCTCCTCGTGTCTCAAACTCTG 60.352 54.545 0.00 0.00 0.00 3.35
141 142 1.889829 CCTCCTCGTGTCTCAAACTCT 59.110 52.381 0.00 0.00 0.00 3.24
142 143 1.670380 GCCTCCTCGTGTCTCAAACTC 60.670 57.143 0.00 0.00 0.00 3.01
143 144 0.318762 GCCTCCTCGTGTCTCAAACT 59.681 55.000 0.00 0.00 0.00 2.66
144 145 0.318762 AGCCTCCTCGTGTCTCAAAC 59.681 55.000 0.00 0.00 0.00 2.93
145 146 1.919240 TAGCCTCCTCGTGTCTCAAA 58.081 50.000 0.00 0.00 0.00 2.69
146 147 1.919240 TTAGCCTCCTCGTGTCTCAA 58.081 50.000 0.00 0.00 0.00 3.02
147 148 1.819288 CTTTAGCCTCCTCGTGTCTCA 59.181 52.381 0.00 0.00 0.00 3.27
148 149 2.093106 TCTTTAGCCTCCTCGTGTCTC 58.907 52.381 0.00 0.00 0.00 3.36
149 150 2.096248 CTCTTTAGCCTCCTCGTGTCT 58.904 52.381 0.00 0.00 0.00 3.41
150 151 1.470112 GCTCTTTAGCCTCCTCGTGTC 60.470 57.143 0.00 0.00 43.40 3.67
151 152 0.533032 GCTCTTTAGCCTCCTCGTGT 59.467 55.000 0.00 0.00 43.40 4.49
152 153 3.354131 GCTCTTTAGCCTCCTCGTG 57.646 57.895 0.00 0.00 43.40 4.35
162 163 3.849911 TCACGTTCATCCTGCTCTTTAG 58.150 45.455 0.00 0.00 0.00 1.85
163 164 3.953712 TCACGTTCATCCTGCTCTTTA 57.046 42.857 0.00 0.00 0.00 1.85
164 165 2.839486 TCACGTTCATCCTGCTCTTT 57.161 45.000 0.00 0.00 0.00 2.52
165 166 2.693069 CTTCACGTTCATCCTGCTCTT 58.307 47.619 0.00 0.00 0.00 2.85
166 167 1.674221 GCTTCACGTTCATCCTGCTCT 60.674 52.381 0.00 0.00 0.00 4.09
167 168 0.723981 GCTTCACGTTCATCCTGCTC 59.276 55.000 0.00 0.00 0.00 4.26
168 169 1.016130 CGCTTCACGTTCATCCTGCT 61.016 55.000 0.00 0.00 36.87 4.24
169 170 1.421485 CGCTTCACGTTCATCCTGC 59.579 57.895 0.00 0.00 36.87 4.85
170 171 1.291184 TGCGCTTCACGTTCATCCTG 61.291 55.000 9.73 0.00 46.11 3.86
171 172 0.602638 TTGCGCTTCACGTTCATCCT 60.603 50.000 9.73 0.00 46.11 3.24
172 173 0.447801 ATTGCGCTTCACGTTCATCC 59.552 50.000 9.73 0.00 46.11 3.51
173 174 2.159653 AGAATTGCGCTTCACGTTCATC 60.160 45.455 9.73 0.00 46.11 2.92
174 175 1.806542 AGAATTGCGCTTCACGTTCAT 59.193 42.857 9.73 0.00 46.11 2.57
175 176 1.069973 CAGAATTGCGCTTCACGTTCA 60.070 47.619 9.73 0.00 46.11 3.18
176 177 1.194547 TCAGAATTGCGCTTCACGTTC 59.805 47.619 9.73 4.08 46.11 3.95
177 178 1.225855 TCAGAATTGCGCTTCACGTT 58.774 45.000 9.73 0.00 46.11 3.99
178 179 1.069906 GTTCAGAATTGCGCTTCACGT 60.070 47.619 9.73 0.00 46.11 4.49
180 181 2.310577 GTGTTCAGAATTGCGCTTCAC 58.689 47.619 9.73 0.23 0.00 3.18
181 182 1.266718 GGTGTTCAGAATTGCGCTTCA 59.733 47.619 9.73 0.00 0.00 3.02
182 183 1.266718 TGGTGTTCAGAATTGCGCTTC 59.733 47.619 9.73 4.91 0.00 3.86
183 184 1.267806 CTGGTGTTCAGAATTGCGCTT 59.732 47.619 9.73 0.00 46.18 4.68
184 185 0.877071 CTGGTGTTCAGAATTGCGCT 59.123 50.000 9.73 0.00 46.18 5.92
185 186 0.593128 ACTGGTGTTCAGAATTGCGC 59.407 50.000 0.00 0.00 46.18 6.09
186 187 1.872952 TCACTGGTGTTCAGAATTGCG 59.127 47.619 0.00 0.00 46.18 4.85
187 188 4.937620 TCTATCACTGGTGTTCAGAATTGC 59.062 41.667 0.00 0.00 46.18 3.56
188 189 7.439157 TTTCTATCACTGGTGTTCAGAATTG 57.561 36.000 0.00 0.00 46.18 2.32
189 190 7.721399 ACTTTTCTATCACTGGTGTTCAGAATT 59.279 33.333 0.00 0.00 46.18 2.17
190 191 7.227156 ACTTTTCTATCACTGGTGTTCAGAAT 58.773 34.615 0.00 0.00 46.18 2.40
191 192 6.591935 ACTTTTCTATCACTGGTGTTCAGAA 58.408 36.000 0.00 5.75 46.18 3.02
192 193 6.174720 ACTTTTCTATCACTGGTGTTCAGA 57.825 37.500 0.00 0.45 46.18 3.27
194 195 7.122055 ACAAAACTTTTCTATCACTGGTGTTCA 59.878 33.333 0.53 0.00 0.00 3.18
195 196 7.480810 ACAAAACTTTTCTATCACTGGTGTTC 58.519 34.615 0.53 0.00 0.00 3.18
196 197 7.404671 ACAAAACTTTTCTATCACTGGTGTT 57.595 32.000 0.53 0.00 0.00 3.32
197 198 7.254658 CGTACAAAACTTTTCTATCACTGGTGT 60.255 37.037 0.53 0.00 0.00 4.16
198 199 7.069569 CGTACAAAACTTTTCTATCACTGGTG 58.930 38.462 0.00 0.00 0.00 4.17
199 200 6.204108 CCGTACAAAACTTTTCTATCACTGGT 59.796 38.462 0.00 0.00 0.00 4.00
200 201 6.204108 ACCGTACAAAACTTTTCTATCACTGG 59.796 38.462 0.00 0.00 0.00 4.00
201 202 7.186021 ACCGTACAAAACTTTTCTATCACTG 57.814 36.000 0.00 0.00 0.00 3.66
202 203 7.636326 CAACCGTACAAAACTTTTCTATCACT 58.364 34.615 0.00 0.00 0.00 3.41
203 204 6.358822 GCAACCGTACAAAACTTTTCTATCAC 59.641 38.462 0.00 0.00 0.00 3.06
204 205 6.432107 GCAACCGTACAAAACTTTTCTATCA 58.568 36.000 0.00 0.00 0.00 2.15
205 206 5.562623 CGCAACCGTACAAAACTTTTCTATC 59.437 40.000 0.00 0.00 0.00 2.08
206 207 5.445845 CGCAACCGTACAAAACTTTTCTAT 58.554 37.500 0.00 0.00 0.00 1.98
207 208 4.835344 CGCAACCGTACAAAACTTTTCTA 58.165 39.130 0.00 0.00 0.00 2.10
208 209 3.687200 CGCAACCGTACAAAACTTTTCT 58.313 40.909 0.00 0.00 0.00 2.52
222 223 1.086696 AGATTGAATCCACGCAACCG 58.913 50.000 0.75 0.00 41.14 4.44
223 224 2.030457 CGTAGATTGAATCCACGCAACC 59.970 50.000 12.66 0.00 37.56 3.77
224 225 2.030457 CCGTAGATTGAATCCACGCAAC 59.970 50.000 18.31 0.86 41.86 4.17
225 226 2.276201 CCGTAGATTGAATCCACGCAA 58.724 47.619 18.31 0.00 41.86 4.85
226 227 1.472552 CCCGTAGATTGAATCCACGCA 60.473 52.381 18.31 0.00 41.86 5.24
227 228 1.217882 CCCGTAGATTGAATCCACGC 58.782 55.000 18.31 0.00 41.86 5.34
228 229 1.411246 TCCCCGTAGATTGAATCCACG 59.589 52.381 17.10 17.10 42.63 4.94
229 230 3.771577 ATCCCCGTAGATTGAATCCAC 57.228 47.619 0.75 0.00 0.00 4.02
230 231 4.228010 TGTATCCCCGTAGATTGAATCCA 58.772 43.478 0.75 0.00 0.00 3.41
231 232 4.884668 TGTATCCCCGTAGATTGAATCC 57.115 45.455 0.75 0.00 0.00 3.01
232 233 6.037786 TCATGTATCCCCGTAGATTGAATC 57.962 41.667 0.00 0.00 0.00 2.52
233 234 5.046304 CCTCATGTATCCCCGTAGATTGAAT 60.046 44.000 0.00 0.00 0.00 2.57
234 235 4.283467 CCTCATGTATCCCCGTAGATTGAA 59.717 45.833 0.00 0.00 0.00 2.69
235 236 3.832490 CCTCATGTATCCCCGTAGATTGA 59.168 47.826 0.00 0.00 0.00 2.57
236 237 3.832490 TCCTCATGTATCCCCGTAGATTG 59.168 47.826 0.00 0.00 0.00 2.67
237 238 4.090090 CTCCTCATGTATCCCCGTAGATT 58.910 47.826 0.00 0.00 0.00 2.40
238 239 3.702792 CTCCTCATGTATCCCCGTAGAT 58.297 50.000 0.00 0.00 0.00 1.98
239 240 2.818216 GCTCCTCATGTATCCCCGTAGA 60.818 54.545 0.00 0.00 0.00 2.59
240 241 1.546476 GCTCCTCATGTATCCCCGTAG 59.454 57.143 0.00 0.00 0.00 3.51
241 242 1.133294 TGCTCCTCATGTATCCCCGTA 60.133 52.381 0.00 0.00 0.00 4.02
242 243 0.398522 TGCTCCTCATGTATCCCCGT 60.399 55.000 0.00 0.00 0.00 5.28
243 244 0.758734 TTGCTCCTCATGTATCCCCG 59.241 55.000 0.00 0.00 0.00 5.73
244 245 2.050144 TCTTGCTCCTCATGTATCCCC 58.950 52.381 0.00 0.00 0.00 4.81
245 246 2.546795 CGTCTTGCTCCTCATGTATCCC 60.547 54.545 0.00 0.00 0.00 3.85
246 247 2.101582 ACGTCTTGCTCCTCATGTATCC 59.898 50.000 0.00 0.00 0.00 2.59
247 248 3.181486 TGACGTCTTGCTCCTCATGTATC 60.181 47.826 17.92 0.00 0.00 2.24
248 249 2.760650 TGACGTCTTGCTCCTCATGTAT 59.239 45.455 17.92 0.00 0.00 2.29
249 250 2.164422 CTGACGTCTTGCTCCTCATGTA 59.836 50.000 17.92 0.00 0.00 2.29
250 251 0.969149 TGACGTCTTGCTCCTCATGT 59.031 50.000 17.92 0.00 0.00 3.21
251 252 1.638133 CTGACGTCTTGCTCCTCATG 58.362 55.000 17.92 0.00 0.00 3.07
252 253 0.108424 GCTGACGTCTTGCTCCTCAT 60.108 55.000 17.92 0.00 0.00 2.90
253 254 1.181741 AGCTGACGTCTTGCTCCTCA 61.182 55.000 23.78 0.00 30.41 3.86
254 255 0.811915 TAGCTGACGTCTTGCTCCTC 59.188 55.000 29.53 7.45 38.15 3.71
255 256 0.814457 CTAGCTGACGTCTTGCTCCT 59.186 55.000 29.53 15.73 38.15 3.69
256 257 0.811915 TCTAGCTGACGTCTTGCTCC 59.188 55.000 29.53 9.00 38.15 4.70
257 258 1.902840 GTCTAGCTGACGTCTTGCTC 58.097 55.000 29.53 17.53 38.15 4.26
558 559 8.676454 TTTAATACAATTACATCGGCAACAAC 57.324 30.769 0.00 0.00 0.00 3.32
560 561 9.862371 AATTTTAATACAATTACATCGGCAACA 57.138 25.926 0.00 0.00 0.00 3.33
737 750 1.951209 TGGTAACATGGAGAGCCTCA 58.049 50.000 0.00 0.00 46.17 3.86
827 840 2.107366 GCTCTCTCCTTCAAGCTAGGT 58.893 52.381 0.92 0.00 34.29 3.08
864 877 5.850614 ACGGTTGACTTATAACTTCACAGT 58.149 37.500 0.00 0.00 33.11 3.55
865 878 6.033196 CGTACGGTTGACTTATAACTTCACAG 59.967 42.308 7.57 0.00 0.00 3.66
900 913 4.156190 CCGTCTACAGCTCTCTCAAAACTA 59.844 45.833 0.00 0.00 0.00 2.24
902 915 3.246619 CCGTCTACAGCTCTCTCAAAAC 58.753 50.000 0.00 0.00 0.00 2.43
938 951 8.021396 GCTCGGGTTTTATATATTGAACCAATC 58.979 37.037 21.80 10.70 42.55 2.67
948 961 6.213600 AGGACTGATGCTCGGGTTTTATATAT 59.786 38.462 0.00 0.00 0.00 0.86
949 962 5.542635 AGGACTGATGCTCGGGTTTTATATA 59.457 40.000 0.00 0.00 0.00 0.86
969 982 1.272554 AACGAATGGGGAGGGAGGAC 61.273 60.000 0.00 0.00 0.00 3.85
1074 1087 2.974148 GCATCGCCATCATCGCCA 60.974 61.111 0.00 0.00 0.00 5.69
1182 1198 3.390967 TCGATCCATGGATCCAGCTTTAA 59.609 43.478 37.70 17.11 45.95 1.52
1190 1206 2.135933 GAAACGTCGATCCATGGATCC 58.864 52.381 37.70 27.22 45.95 3.36
1195 1211 6.695713 TGAAATACTAGAAACGTCGATCCATG 59.304 38.462 0.00 0.00 0.00 3.66
1383 1413 9.671279 TCAATCAAGAGAAGCACTGAATTATTA 57.329 29.630 0.00 0.00 0.00 0.98
1397 1436 8.526147 GGATCCAAGAAAATTCAATCAAGAGAA 58.474 33.333 6.95 0.00 0.00 2.87
1398 1437 7.892241 AGGATCCAAGAAAATTCAATCAAGAGA 59.108 33.333 15.82 0.00 0.00 3.10
1406 1445 6.326064 TCCAACAAGGATCCAAGAAAATTCAA 59.674 34.615 15.82 0.00 43.07 2.69
1423 1462 4.672542 CGTGGCACTGAATTATCCAACAAG 60.673 45.833 16.72 0.00 0.00 3.16
1428 1490 1.557371 TCCGTGGCACTGAATTATCCA 59.443 47.619 16.72 0.00 0.00 3.41
1429 1491 2.213499 CTCCGTGGCACTGAATTATCC 58.787 52.381 16.72 0.00 0.00 2.59
1430 1492 1.599542 GCTCCGTGGCACTGAATTATC 59.400 52.381 16.72 0.00 0.00 1.75
1432 1494 0.323302 TGCTCCGTGGCACTGAATTA 59.677 50.000 16.72 1.09 37.29 1.40
1433 1495 1.073025 TGCTCCGTGGCACTGAATT 59.927 52.632 16.72 0.00 37.29 2.17
1434 1496 2.749682 TGCTCCGTGGCACTGAAT 59.250 55.556 16.72 0.00 37.29 2.57
1443 1505 3.220999 TTCACCCTCGTGCTCCGTG 62.221 63.158 0.00 0.00 40.04 4.94
1444 1506 2.915659 TTCACCCTCGTGCTCCGT 60.916 61.111 0.00 0.00 40.04 4.69
1445 1507 2.125912 CTTCACCCTCGTGCTCCG 60.126 66.667 0.00 0.00 40.04 4.63
1446 1508 1.827399 TTCCTTCACCCTCGTGCTCC 61.827 60.000 0.00 0.00 40.04 4.70
1447 1509 0.390472 CTTCCTTCACCCTCGTGCTC 60.390 60.000 0.00 0.00 40.04 4.26
1448 1510 1.122019 ACTTCCTTCACCCTCGTGCT 61.122 55.000 0.00 0.00 40.04 4.40
1449 1511 0.606604 TACTTCCTTCACCCTCGTGC 59.393 55.000 0.00 0.00 40.04 5.34
1450 1512 2.496070 TGATACTTCCTTCACCCTCGTG 59.504 50.000 0.00 0.00 41.72 4.35
1451 1513 2.816411 TGATACTTCCTTCACCCTCGT 58.184 47.619 0.00 0.00 0.00 4.18
1452 1514 3.887621 TTGATACTTCCTTCACCCTCG 57.112 47.619 0.00 0.00 0.00 4.63
1453 1515 6.647067 CGATATTTGATACTTCCTTCACCCTC 59.353 42.308 0.00 0.00 0.00 4.30
1454 1516 6.099845 ACGATATTTGATACTTCCTTCACCCT 59.900 38.462 0.00 0.00 0.00 4.34
1455 1517 6.289064 ACGATATTTGATACTTCCTTCACCC 58.711 40.000 0.00 0.00 0.00 4.61
1456 1518 7.630924 CAACGATATTTGATACTTCCTTCACC 58.369 38.462 0.00 0.00 0.00 4.02
1457 1519 7.011482 AGCAACGATATTTGATACTTCCTTCAC 59.989 37.037 0.00 0.00 0.00 3.18
1458 1520 7.047891 AGCAACGATATTTGATACTTCCTTCA 58.952 34.615 0.00 0.00 0.00 3.02
1459 1521 7.224753 TGAGCAACGATATTTGATACTTCCTTC 59.775 37.037 0.00 0.00 0.00 3.46
1460 1522 7.047891 TGAGCAACGATATTTGATACTTCCTT 58.952 34.615 0.00 0.00 0.00 3.36
1461 1523 6.582636 TGAGCAACGATATTTGATACTTCCT 58.417 36.000 0.00 0.00 0.00 3.36
1462 1524 6.844696 TGAGCAACGATATTTGATACTTCC 57.155 37.500 0.00 0.00 0.00 3.46
1463 1525 9.374960 GATTTGAGCAACGATATTTGATACTTC 57.625 33.333 0.00 0.00 0.00 3.01
1464 1526 8.892723 TGATTTGAGCAACGATATTTGATACTT 58.107 29.630 0.00 0.00 0.00 2.24
1465 1527 8.338259 GTGATTTGAGCAACGATATTTGATACT 58.662 33.333 0.00 0.00 0.00 2.12
1466 1528 8.122330 TGTGATTTGAGCAACGATATTTGATAC 58.878 33.333 0.00 0.00 0.00 2.24
1467 1529 8.207521 TGTGATTTGAGCAACGATATTTGATA 57.792 30.769 0.00 0.00 0.00 2.15
1468 1530 7.087409 TGTGATTTGAGCAACGATATTTGAT 57.913 32.000 0.00 0.00 0.00 2.57
1469 1531 6.493449 TGTGATTTGAGCAACGATATTTGA 57.507 33.333 0.00 0.00 0.00 2.69
1470 1532 6.197655 CCATGTGATTTGAGCAACGATATTTG 59.802 38.462 0.00 0.00 0.00 2.32
1471 1533 6.095300 TCCATGTGATTTGAGCAACGATATTT 59.905 34.615 0.00 0.00 0.00 1.40
1472 1534 5.589855 TCCATGTGATTTGAGCAACGATATT 59.410 36.000 0.00 0.00 0.00 1.28
1473 1535 5.125356 TCCATGTGATTTGAGCAACGATAT 58.875 37.500 0.00 0.00 0.00 1.63
1474 1536 4.512484 TCCATGTGATTTGAGCAACGATA 58.488 39.130 0.00 0.00 0.00 2.92
1478 1540 3.444742 TCCATCCATGTGATTTGAGCAAC 59.555 43.478 0.00 0.00 0.00 4.17
1495 1557 2.315925 TCGACCTGCAAAGATCCATC 57.684 50.000 0.00 0.00 0.00 3.51
1497 1559 1.833630 AGATCGACCTGCAAAGATCCA 59.166 47.619 13.36 0.00 40.06 3.41
1498 1560 2.208431 CAGATCGACCTGCAAAGATCC 58.792 52.381 0.00 1.77 40.06 3.36
1499 1561 2.208431 CCAGATCGACCTGCAAAGATC 58.792 52.381 0.00 10.54 39.64 2.75
1758 1820 2.097160 CCGTACTGGTCGTCGTCG 59.903 66.667 0.00 0.00 38.55 5.12
1842 1922 2.352805 CCCTGTCCTTGGTCCTGC 59.647 66.667 0.00 0.00 0.00 4.85
1873 1953 3.602513 AAGACAGCGCAGGAGGCAG 62.603 63.158 11.47 0.00 45.17 4.85
1929 2009 2.408241 GGCGACGCTGTACTCCTCT 61.408 63.158 20.77 0.00 0.00 3.69
1973 2053 3.072468 CGCCGGGGTCAGTAGGAA 61.072 66.667 11.01 0.00 0.00 3.36
2156 2236 1.452145 GCTTGTTCACCAGGGCGAAA 61.452 55.000 0.00 0.00 0.00 3.46
2176 2256 1.238439 CTTGATTGCTTCACCGGTGT 58.762 50.000 32.74 13.92 32.84 4.16
2183 2263 2.811410 AGGGAATGCTTGATTGCTTCA 58.189 42.857 0.00 0.00 33.03 3.02
2189 2269 3.267812 TCTCTCCAAGGGAATGCTTGATT 59.732 43.478 0.00 0.00 32.75 2.57
2332 3081 0.656785 GCACCGACTCGTCTAGGTAG 59.343 60.000 0.00 0.00 34.83 3.18
2338 3087 2.645567 CACAGCACCGACTCGTCT 59.354 61.111 0.00 0.00 0.00 4.18
2359 3108 2.820479 CCGACGTCCTCGCTCTCT 60.820 66.667 10.58 0.00 41.46 3.10
2474 3223 0.103208 CACTCCCACAGGACGATAGC 59.897 60.000 0.00 0.00 37.19 2.97
2569 5855 1.227823 CGGATAATGAAGCGGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
2634 5923 2.079925 GCTTAGACAGGGCTGTTTCAG 58.920 52.381 0.00 0.00 45.05 3.02
2635 5924 1.699634 AGCTTAGACAGGGCTGTTTCA 59.300 47.619 0.00 0.00 45.05 2.69
2636 5925 2.481289 AGCTTAGACAGGGCTGTTTC 57.519 50.000 0.00 0.00 45.05 2.78
2637 5926 2.907042 ACTAGCTTAGACAGGGCTGTTT 59.093 45.455 0.00 0.00 45.05 2.83
2638 5927 2.234908 CACTAGCTTAGACAGGGCTGTT 59.765 50.000 0.00 0.00 45.05 3.16
2640 5929 1.827969 ACACTAGCTTAGACAGGGCTG 59.172 52.381 0.00 0.00 37.50 4.85
2641 5930 1.827969 CACACTAGCTTAGACAGGGCT 59.172 52.381 0.00 0.00 39.74 5.19
2642 5931 1.550976 ACACACTAGCTTAGACAGGGC 59.449 52.381 0.00 0.00 0.00 5.19
2643 5932 3.963428 AACACACTAGCTTAGACAGGG 57.037 47.619 0.00 0.00 0.00 4.45
2666 5955 2.840038 AGCTAGTGATCCACCACATGAA 59.160 45.455 0.00 0.00 39.42 2.57
2691 5980 1.070175 GCACACACGCAAATAGACGTT 60.070 47.619 0.00 0.00 41.32 3.99
2694 5983 0.511221 ACGCACACACGCAAATAGAC 59.489 50.000 0.00 0.00 36.19 2.59
2702 5991 2.159707 AGATTAATCAACGCACACACGC 60.160 45.455 17.56 0.00 36.19 5.34
2710 5999 7.005062 ACACAAGATACAGATTAATCAACGC 57.995 36.000 17.56 3.26 0.00 4.84
2807 6097 1.697284 TGGTGGCTATTTTGTGTGCA 58.303 45.000 0.00 0.00 0.00 4.57
2810 6100 3.696051 CAGCTATGGTGGCTATTTTGTGT 59.304 43.478 0.00 0.00 38.03 3.72
2814 6104 2.689983 GTGCAGCTATGGTGGCTATTTT 59.310 45.455 0.00 0.00 38.03 1.82
2821 6111 4.060900 CAGTTATAGTGCAGCTATGGTGG 58.939 47.826 15.05 3.83 40.41 4.61
2835 6125 0.314302 CGGTCCCGAGGCAGTTATAG 59.686 60.000 0.00 0.00 42.83 1.31
2861 6151 2.364973 TCCCTAGCGTCATGGCCA 60.365 61.111 8.56 8.56 0.00 5.36
2866 6156 1.364171 GCATCGTCCCTAGCGTCAT 59.636 57.895 0.00 0.00 0.00 3.06
2867 6157 2.805546 GCATCGTCCCTAGCGTCA 59.194 61.111 0.00 0.00 0.00 4.35
2901 6191 6.156519 GTGCTAATTTTGGAGTTGTTTAGGG 58.843 40.000 0.00 0.00 0.00 3.53
2931 6221 9.579932 AGGAAAGTGATGATTTCTAGAGTTTTT 57.420 29.630 0.00 0.00 36.96 1.94
2933 6223 7.826744 GGAGGAAAGTGATGATTTCTAGAGTTT 59.173 37.037 0.00 0.00 36.96 2.66
2935 6225 6.671779 AGGAGGAAAGTGATGATTTCTAGAGT 59.328 38.462 0.00 0.00 36.96 3.24
2936 6226 7.123355 AGGAGGAAAGTGATGATTTCTAGAG 57.877 40.000 0.00 0.00 36.96 2.43
2937 6227 6.098982 GGAGGAGGAAAGTGATGATTTCTAGA 59.901 42.308 0.00 0.00 36.96 2.43
2938 6228 6.287525 GGAGGAGGAAAGTGATGATTTCTAG 58.712 44.000 0.00 0.00 36.96 2.43
2939 6229 5.131142 GGGAGGAGGAAAGTGATGATTTCTA 59.869 44.000 0.00 0.00 36.96 2.10
2941 6231 4.203226 GGGAGGAGGAAAGTGATGATTTC 58.797 47.826 0.00 0.00 36.20 2.17
2942 6232 3.053320 GGGGAGGAGGAAAGTGATGATTT 60.053 47.826 0.00 0.00 0.00 2.17
2944 6234 2.131023 GGGGAGGAGGAAAGTGATGAT 58.869 52.381 0.00 0.00 0.00 2.45
2946 6236 1.289160 TGGGGAGGAGGAAAGTGATG 58.711 55.000 0.00 0.00 0.00 3.07
2947 6237 1.918957 CTTGGGGAGGAGGAAAGTGAT 59.081 52.381 0.00 0.00 0.00 3.06
2948 6238 1.132527 TCTTGGGGAGGAGGAAAGTGA 60.133 52.381 0.00 0.00 0.00 3.41
2949 6239 1.362224 TCTTGGGGAGGAGGAAAGTG 58.638 55.000 0.00 0.00 0.00 3.16
2950 6240 2.133858 TTCTTGGGGAGGAGGAAAGT 57.866 50.000 0.00 0.00 0.00 2.66
2951 6241 3.157881 GTTTTCTTGGGGAGGAGGAAAG 58.842 50.000 0.00 0.00 0.00 2.62
2952 6242 2.516277 TGTTTTCTTGGGGAGGAGGAAA 59.484 45.455 0.00 0.00 0.00 3.13
2953 6243 2.140224 TGTTTTCTTGGGGAGGAGGAA 58.860 47.619 0.00 0.00 0.00 3.36
2954 6244 1.423921 GTGTTTTCTTGGGGAGGAGGA 59.576 52.381 0.00 0.00 0.00 3.71
2955 6245 1.425448 AGTGTTTTCTTGGGGAGGAGG 59.575 52.381 0.00 0.00 0.00 4.30
2956 6246 2.553247 GGAGTGTTTTCTTGGGGAGGAG 60.553 54.545 0.00 0.00 0.00 3.69
2957 6247 1.423921 GGAGTGTTTTCTTGGGGAGGA 59.576 52.381 0.00 0.00 0.00 3.71
2958 6248 1.547901 GGGAGTGTTTTCTTGGGGAGG 60.548 57.143 0.00 0.00 0.00 4.30
2959 6249 1.144913 TGGGAGTGTTTTCTTGGGGAG 59.855 52.381 0.00 0.00 0.00 4.30
2960 6250 1.144913 CTGGGAGTGTTTTCTTGGGGA 59.855 52.381 0.00 0.00 0.00 4.81
2961 6251 1.144913 TCTGGGAGTGTTTTCTTGGGG 59.855 52.381 0.00 0.00 0.00 4.96
2962 6252 2.230660 GTCTGGGAGTGTTTTCTTGGG 58.769 52.381 0.00 0.00 0.00 4.12
2963 6253 1.873591 CGTCTGGGAGTGTTTTCTTGG 59.126 52.381 0.00 0.00 0.00 3.61
2964 6254 2.833794 TCGTCTGGGAGTGTTTTCTTG 58.166 47.619 0.00 0.00 0.00 3.02
2965 6255 3.771577 ATCGTCTGGGAGTGTTTTCTT 57.228 42.857 0.00 0.00 0.00 2.52
2966 6256 3.771577 AATCGTCTGGGAGTGTTTTCT 57.228 42.857 0.00 0.00 0.00 2.52
2967 6257 3.933332 CCTAATCGTCTGGGAGTGTTTTC 59.067 47.826 0.00 0.00 0.00 2.29
2968 6258 3.326880 ACCTAATCGTCTGGGAGTGTTTT 59.673 43.478 0.00 0.00 0.00 2.43
2969 6259 2.904434 ACCTAATCGTCTGGGAGTGTTT 59.096 45.455 0.00 0.00 0.00 2.83
2970 6260 2.537143 ACCTAATCGTCTGGGAGTGTT 58.463 47.619 0.00 0.00 0.00 3.32
2971 6261 2.233305 ACCTAATCGTCTGGGAGTGT 57.767 50.000 0.00 0.00 0.00 3.55
2972 6262 3.522553 GAAACCTAATCGTCTGGGAGTG 58.477 50.000 0.00 0.00 0.00 3.51
2973 6263 2.500504 GGAAACCTAATCGTCTGGGAGT 59.499 50.000 0.00 0.00 0.00 3.85
2974 6264 2.766828 AGGAAACCTAATCGTCTGGGAG 59.233 50.000 0.00 0.00 28.47 4.30
2975 6265 2.829023 AGGAAACCTAATCGTCTGGGA 58.171 47.619 0.00 0.00 28.47 4.37
2976 6266 3.197983 AGAAGGAAACCTAATCGTCTGGG 59.802 47.826 0.00 0.00 31.13 4.45
2977 6267 4.160626 AGAGAAGGAAACCTAATCGTCTGG 59.839 45.833 0.00 0.00 31.13 3.86
2978 6268 5.331876 AGAGAAGGAAACCTAATCGTCTG 57.668 43.478 0.00 0.00 31.13 3.51
2979 6269 4.096682 CGAGAGAAGGAAACCTAATCGTCT 59.903 45.833 0.00 0.00 31.13 4.18
2980 6270 4.142425 ACGAGAGAAGGAAACCTAATCGTC 60.142 45.833 0.00 0.00 34.68 4.20
2981 6271 3.762823 ACGAGAGAAGGAAACCTAATCGT 59.237 43.478 0.00 0.00 34.81 3.73
2982 6272 4.373348 ACGAGAGAAGGAAACCTAATCG 57.627 45.455 0.00 0.00 33.55 3.34
2983 6273 5.736777 GCCTACGAGAGAAGGAAACCTAATC 60.737 48.000 0.00 0.00 34.58 1.75
2984 6274 4.099727 GCCTACGAGAGAAGGAAACCTAAT 59.900 45.833 0.00 0.00 34.58 1.73
2985 6275 3.446516 GCCTACGAGAGAAGGAAACCTAA 59.553 47.826 0.00 0.00 34.58 2.69
2986 6276 3.022406 GCCTACGAGAGAAGGAAACCTA 58.978 50.000 0.00 0.00 34.58 3.08
2987 6277 1.826096 GCCTACGAGAGAAGGAAACCT 59.174 52.381 0.00 0.00 34.58 3.50
2988 6278 1.549170 TGCCTACGAGAGAAGGAAACC 59.451 52.381 0.00 0.00 34.58 3.27
2989 6279 2.608268 GTGCCTACGAGAGAAGGAAAC 58.392 52.381 0.00 0.00 34.58 2.78
2990 6280 1.549170 GGTGCCTACGAGAGAAGGAAA 59.451 52.381 0.00 0.00 34.58 3.13
2991 6281 1.183549 GGTGCCTACGAGAGAAGGAA 58.816 55.000 0.00 0.00 34.58 3.36
2992 6282 0.683504 GGGTGCCTACGAGAGAAGGA 60.684 60.000 0.00 0.00 34.58 3.36
2993 6283 1.677637 GGGGTGCCTACGAGAGAAGG 61.678 65.000 0.00 0.00 35.86 3.46
2994 6284 0.684805 AGGGGTGCCTACGAGAGAAG 60.685 60.000 0.00 0.00 0.00 2.85
2995 6285 0.970937 CAGGGGTGCCTACGAGAGAA 60.971 60.000 0.00 0.00 0.00 2.87
2996 6286 1.379977 CAGGGGTGCCTACGAGAGA 60.380 63.158 0.00 0.00 0.00 3.10
2997 6287 3.082579 GCAGGGGTGCCTACGAGAG 62.083 68.421 0.00 0.00 0.00 3.20
2998 6288 3.075005 GCAGGGGTGCCTACGAGA 61.075 66.667 0.00 0.00 0.00 4.04
3215 6505 2.932234 AAGACAGACAGCGGGGTCG 61.932 63.158 0.00 0.00 42.62 4.79
3216 6506 1.374758 CAAGACAGACAGCGGGGTC 60.375 63.158 0.00 0.00 38.08 4.46
3217 6507 1.194781 ATCAAGACAGACAGCGGGGT 61.195 55.000 0.00 0.00 0.00 4.95
3218 6508 0.036010 AATCAAGACAGACAGCGGGG 60.036 55.000 0.00 0.00 0.00 5.73
3219 6509 2.544685 CTAATCAAGACAGACAGCGGG 58.455 52.381 0.00 0.00 0.00 6.13
3220 6510 2.544685 CCTAATCAAGACAGACAGCGG 58.455 52.381 0.00 0.00 0.00 5.52
3221 6511 1.929836 GCCTAATCAAGACAGACAGCG 59.070 52.381 0.00 0.00 0.00 5.18
3222 6512 2.093235 AGGCCTAATCAAGACAGACAGC 60.093 50.000 1.29 0.00 0.00 4.40
3223 6513 3.902881 AGGCCTAATCAAGACAGACAG 57.097 47.619 1.29 0.00 0.00 3.51
3224 6514 4.202461 ACAAAGGCCTAATCAAGACAGACA 60.202 41.667 5.16 0.00 0.00 3.41
3225 6515 4.154918 CACAAAGGCCTAATCAAGACAGAC 59.845 45.833 5.16 0.00 0.00 3.51
3226 6516 4.326826 CACAAAGGCCTAATCAAGACAGA 58.673 43.478 5.16 0.00 0.00 3.41
3227 6517 3.441572 CCACAAAGGCCTAATCAAGACAG 59.558 47.826 5.16 0.00 0.00 3.51
3267 6634 4.949121 ACTTGGGAGACAGTATTCCTACT 58.051 43.478 0.00 0.00 38.79 2.57
3287 6654 3.288964 ACATCGGAACTAGGATCGAACT 58.711 45.455 7.44 0.00 35.25 3.01
3303 6670 4.499399 CCGACAATACTAGACACAACATCG 59.501 45.833 0.00 0.00 0.00 3.84
3308 6675 4.338012 TCCTCCGACAATACTAGACACAA 58.662 43.478 0.00 0.00 0.00 3.33
3318 6685 3.254903 CGTCCATACATCCTCCGACAATA 59.745 47.826 0.00 0.00 0.00 1.90
3324 6691 0.744874 ACACGTCCATACATCCTCCG 59.255 55.000 0.00 0.00 0.00 4.63
3326 6693 2.427453 AGACACACGTCCATACATCCTC 59.573 50.000 0.00 0.00 43.73 3.71
3339 6706 1.202268 GGGATTAGACGGAGACACACG 60.202 57.143 0.00 0.00 0.00 4.49
3358 6725 0.734889 GCATCAACAGAATCCCACGG 59.265 55.000 0.00 0.00 0.00 4.94
3363 6730 2.996631 AGACCAGCATCAACAGAATCC 58.003 47.619 0.00 0.00 0.00 3.01
3368 6735 3.005554 CACCTAAGACCAGCATCAACAG 58.994 50.000 0.00 0.00 0.00 3.16
3377 6744 1.645710 ACAGACCCACCTAAGACCAG 58.354 55.000 0.00 0.00 0.00 4.00
3393 6760 6.692681 CACAAACAAAGACTACATCCAAACAG 59.307 38.462 0.00 0.00 0.00 3.16
3411 6778 6.653320 GGATCAAACCTATAGACACACAAACA 59.347 38.462 0.00 0.00 0.00 2.83
3415 6782 6.620877 AAGGATCAAACCTATAGACACACA 57.379 37.500 0.00 0.00 39.62 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.