Multiple sequence alignment - TraesCS7D01G537000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G537000 chr7D 100.000 2849 0 0 1 2849 628647543 628650391 0.000000e+00 5262
1 TraesCS7D01G537000 chr7D 93.340 961 59 3 378 1335 628622350 628623308 0.000000e+00 1415
2 TraesCS7D01G537000 chr7D 86.878 1105 139 5 838 1938 628641287 628642389 0.000000e+00 1232
3 TraesCS7D01G537000 chr7A 95.386 1712 52 11 1 1710 724459516 724457830 0.000000e+00 2699
4 TraesCS7D01G537000 chr7A 84.747 1462 147 28 414 1801 726047929 726049388 0.000000e+00 1395
5 TraesCS7D01G537000 chr7A 86.457 1174 152 6 838 2007 724506390 724505220 0.000000e+00 1280
6 TraesCS7D01G537000 chr7A 88.648 969 103 3 838 1801 726130471 726131437 0.000000e+00 1173
7 TraesCS7D01G537000 chr7A 88.648 969 103 3 838 1801 726261337 726262303 0.000000e+00 1173
8 TraesCS7D01G537000 chr7A 93.943 743 44 1 2108 2849 724457433 724456691 0.000000e+00 1122
9 TraesCS7D01G537000 chr7A 97.423 388 10 0 1727 2114 724457844 724457457 0.000000e+00 662
10 TraesCS7D01G537000 chr7A 86.806 144 12 7 123 265 726260683 726260820 1.370000e-33 154
11 TraesCS7D01G537000 chr7A 86.111 144 13 7 123 265 726331079 726331216 6.360000e-32 148
12 TraesCS7D01G537000 chr7B 85.127 1459 145 28 415 1801 732743039 732744497 0.000000e+00 1426
13 TraesCS7D01G537000 chrUn 88.648 969 103 3 838 1801 335106377 335107343 0.000000e+00 1173
14 TraesCS7D01G537000 chrUn 86.806 144 12 7 123 265 335105723 335105860 1.370000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G537000 chr7D 628647543 628650391 2848 False 5262.000000 5262 100.000 1 2849 1 chr7D.!!$F3 2848
1 TraesCS7D01G537000 chr7D 628622350 628623308 958 False 1415.000000 1415 93.340 378 1335 1 chr7D.!!$F1 957
2 TraesCS7D01G537000 chr7D 628641287 628642389 1102 False 1232.000000 1232 86.878 838 1938 1 chr7D.!!$F2 1100
3 TraesCS7D01G537000 chr7A 724456691 724459516 2825 True 1494.333333 2699 95.584 1 2849 3 chr7A.!!$R2 2848
4 TraesCS7D01G537000 chr7A 726047929 726049388 1459 False 1395.000000 1395 84.747 414 1801 1 chr7A.!!$F1 1387
5 TraesCS7D01G537000 chr7A 724505220 724506390 1170 True 1280.000000 1280 86.457 838 2007 1 chr7A.!!$R1 1169
6 TraesCS7D01G537000 chr7A 726130471 726131437 966 False 1173.000000 1173 88.648 838 1801 1 chr7A.!!$F2 963
7 TraesCS7D01G537000 chr7A 726260683 726262303 1620 False 663.500000 1173 87.727 123 1801 2 chr7A.!!$F4 1678
8 TraesCS7D01G537000 chr7B 732743039 732744497 1458 False 1426.000000 1426 85.127 415 1801 1 chr7B.!!$F1 1386
9 TraesCS7D01G537000 chrUn 335105723 335107343 1620 False 663.500000 1173 87.727 123 1801 2 chrUn.!!$F1 1678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 536 1.935199 GAGGAACAACGTTCGTTTCCA 59.065 47.619 24.56 0.0 31.13 3.53 F
1354 1467 1.593196 CTTCTGCGTCCAAGGTGAAA 58.407 50.000 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1383 1496 0.535553 TAAACACCGGTGACCTTGCC 60.536 55.0 40.21 0.0 0.0 4.52 R
2196 2369 0.538287 GGCAGCCAGGAGTTCAACTT 60.538 55.0 6.55 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.644798 AGCAGGAACAAACTACCCAGAT 59.355 45.455 0.00 0.00 0.00 2.90
59 60 4.282195 ACCCAGATCGAGAAATACTGATCC 59.718 45.833 0.00 0.00 35.65 3.36
60 61 4.281941 CCCAGATCGAGAAATACTGATCCA 59.718 45.833 0.00 0.00 35.65 3.41
224 232 5.408604 CCGTTATTCAATCCATAGCTGGTAC 59.591 44.000 0.00 0.00 43.61 3.34
260 268 9.920946 ACAGTAGAGACTAGTAGTAGTAGTAGT 57.079 37.037 20.50 20.50 44.80 2.73
296 304 6.712179 AGTAGTAGTACAAAGGTAGATGCC 57.288 41.667 10.33 0.00 0.00 4.40
320 328 6.117911 TGCATGGTTCGTATAGATTTGTTG 57.882 37.500 0.00 0.00 0.00 3.33
432 440 3.574396 TGGAAAAATTGTACGAATGGCCA 59.426 39.130 8.56 8.56 0.00 5.36
464 472 2.617274 GGTCTTCTTGCGGTGCCAC 61.617 63.158 0.00 0.00 0.00 5.01
495 503 7.108841 TGTAGTAATTAATTCAGAGGAGCGT 57.891 36.000 3.39 0.00 0.00 5.07
528 536 1.935199 GAGGAACAACGTTCGTTTCCA 59.065 47.619 24.56 0.00 31.13 3.53
539 549 3.423123 CGTTCGTTTCCACTGATGTTAGC 60.423 47.826 0.00 0.00 0.00 3.09
553 563 6.488006 ACTGATGTTAGCAGTCAAAACATTCT 59.512 34.615 1.86 0.00 42.62 2.40
593 603 2.227626 GTGAAAGCCAGAGGAAAAGAGC 59.772 50.000 0.00 0.00 0.00 4.09
661 690 4.578516 TGAGTTTGGTCCATAACTTGTGTG 59.421 41.667 15.98 0.00 34.88 3.82
1289 1402 2.021723 GCCACCACCAGAACTGTCAAA 61.022 52.381 1.18 0.00 0.00 2.69
1354 1467 1.593196 CTTCTGCGTCCAAGGTGAAA 58.407 50.000 0.00 0.00 0.00 2.69
1383 1496 0.595053 CACATAGGGTAGTGCTCGCG 60.595 60.000 0.00 0.00 0.00 5.87
1445 1558 3.371034 TGATGGAGAAAGACGGGTCATA 58.629 45.455 1.17 0.00 0.00 2.15
1472 1585 4.665833 TCGTGGAAGATATGTTACCTGG 57.334 45.455 0.00 0.00 0.00 4.45
1576 1689 3.130693 AGAGATTGTACGCCACTTACTCC 59.869 47.826 0.00 0.00 0.00 3.85
1705 1848 7.558604 TGATCAACATCAGTGTAATGATCTCA 58.441 34.615 20.60 9.40 44.94 3.27
1706 1849 8.042515 TGATCAACATCAGTGTAATGATCTCAA 58.957 33.333 20.60 7.97 44.94 3.02
1707 1850 8.797350 ATCAACATCAGTGTAATGATCTCAAA 57.203 30.769 0.00 0.00 37.84 2.69
1708 1851 8.032952 TCAACATCAGTGTAATGATCTCAAAC 57.967 34.615 0.00 0.00 37.84 2.93
1709 1852 7.661027 TCAACATCAGTGTAATGATCTCAAACA 59.339 33.333 0.00 0.00 37.84 2.83
1710 1853 7.606858 ACATCAGTGTAATGATCTCAAACAG 57.393 36.000 0.00 0.00 37.84 3.16
1711 1854 6.596888 ACATCAGTGTAATGATCTCAAACAGG 59.403 38.462 0.00 0.00 37.84 4.00
1712 1855 4.937620 TCAGTGTAATGATCTCAAACAGGC 59.062 41.667 0.00 0.00 0.00 4.85
1713 1856 4.940046 CAGTGTAATGATCTCAAACAGGCT 59.060 41.667 0.00 0.00 0.00 4.58
1714 1857 5.413833 CAGTGTAATGATCTCAAACAGGCTT 59.586 40.000 0.00 0.00 0.00 4.35
1715 1858 5.413833 AGTGTAATGATCTCAAACAGGCTTG 59.586 40.000 0.00 0.00 0.00 4.01
1716 1859 3.863142 AATGATCTCAAACAGGCTTGC 57.137 42.857 0.00 0.00 0.00 4.01
1717 1860 1.538047 TGATCTCAAACAGGCTTGCC 58.462 50.000 2.97 2.97 0.00 4.52
1718 1861 1.074405 TGATCTCAAACAGGCTTGCCT 59.926 47.619 8.56 8.56 0.00 4.75
1719 1862 1.742268 GATCTCAAACAGGCTTGCCTC 59.258 52.381 11.72 0.00 0.00 4.70
1720 1863 0.473755 TCTCAAACAGGCTTGCCTCA 59.526 50.000 11.72 0.00 0.00 3.86
1721 1864 1.133823 TCTCAAACAGGCTTGCCTCAA 60.134 47.619 11.72 0.00 0.00 3.02
1722 1865 1.682854 CTCAAACAGGCTTGCCTCAAA 59.317 47.619 11.72 0.00 0.00 2.69
1723 1866 2.298163 CTCAAACAGGCTTGCCTCAAAT 59.702 45.455 11.72 0.00 0.00 2.32
1724 1867 2.699846 TCAAACAGGCTTGCCTCAAATT 59.300 40.909 11.72 1.57 0.00 1.82
1725 1868 2.803956 CAAACAGGCTTGCCTCAAATTG 59.196 45.455 11.72 10.21 0.00 2.32
1904 2047 6.957631 ACTGATACATCACACCTTTCCATTA 58.042 36.000 0.00 0.00 32.50 1.90
2052 2195 3.928727 AACTGCAAGAATGACATGTGG 57.071 42.857 1.15 0.00 37.43 4.17
2066 2209 5.358090 TGACATGTGGTTAAACTAACACGA 58.642 37.500 1.15 0.00 40.39 4.35
2095 2238 5.478332 CCTATCTTCCCTTTTTCTGCAAACT 59.522 40.000 0.00 0.00 0.00 2.66
2173 2346 4.021925 AACTCTGTGCCCGGAGCC 62.022 66.667 0.73 0.00 46.36 4.70
2196 2369 2.223157 CGCCAAACACGAAAACTCTTGA 60.223 45.455 0.00 0.00 0.00 3.02
2281 2454 2.053618 AGGAACTCGCAGAAGCTGT 58.946 52.632 0.00 0.00 39.10 4.40
2289 2462 0.718343 CGCAGAAGCTGTAGAGTTGC 59.282 55.000 0.00 0.00 39.10 4.17
2300 2473 4.122776 CTGTAGAGTTGCAGTTTGAGTGT 58.877 43.478 0.00 0.00 32.96 3.55
2346 2519 4.371855 AGTGATATCGTGTGTACCAGTG 57.628 45.455 0.00 0.00 0.00 3.66
2407 2580 5.940470 AGACTTGCTTAACTGGGACTAAATG 59.060 40.000 0.00 0.00 0.00 2.32
2429 2602 0.890542 TGACCAGCTGAATGTGCCAC 60.891 55.000 17.39 0.00 0.00 5.01
2435 2608 1.582968 CTGAATGTGCCACCAGTGC 59.417 57.895 0.00 0.00 0.00 4.40
2443 2616 2.213499 GTGCCACCAGTGCTATATGTC 58.787 52.381 0.00 0.00 0.00 3.06
2458 2631 0.670546 ATGTCTTTGTGGCCGACTCG 60.671 55.000 8.86 0.00 0.00 4.18
2462 2635 4.717629 TTGTGGCCGACTCGAGCG 62.718 66.667 13.61 16.54 0.00 5.03
2469 2642 4.180946 CGACTCGAGCGACCCCAG 62.181 72.222 19.91 0.00 0.00 4.45
2503 2676 3.126001 TGCCGAACAGATTTCAACTCT 57.874 42.857 0.00 0.00 0.00 3.24
2508 2681 5.625251 CCGAACAGATTTCAACTCTGATTG 58.375 41.667 11.54 3.86 42.22 2.67
2529 2702 5.140747 TGTTTCAGAGAGGAGAAGCTAAC 57.859 43.478 0.00 0.00 0.00 2.34
2530 2703 4.021016 TGTTTCAGAGAGGAGAAGCTAACC 60.021 45.833 0.00 0.00 0.00 2.85
2533 2706 5.130705 TCAGAGAGGAGAAGCTAACCATA 57.869 43.478 0.00 0.00 0.00 2.74
2552 2725 1.656652 AGAATTTGCCGTCGATGAGG 58.343 50.000 6.11 3.04 0.00 3.86
2559 2732 1.737236 TGCCGTCGATGAGGATTTTTG 59.263 47.619 6.11 0.00 0.00 2.44
2563 2736 1.405463 GTCGATGAGGATTTTTGGGCC 59.595 52.381 0.00 0.00 0.00 5.80
2587 2760 2.731976 GGAGAGCTGCCGTTAATAATCG 59.268 50.000 0.00 0.00 0.00 3.34
2639 2812 4.437239 ACAATACAGCCAAGAGATTCTCG 58.563 43.478 8.01 0.00 35.36 4.04
2640 2813 3.742433 ATACAGCCAAGAGATTCTCGG 57.258 47.619 8.01 5.74 35.36 4.63
2704 2878 9.187996 TGTTGGTGAATGTGAACAATGATATAT 57.812 29.630 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.150767 GCTAATGTGTGTGGTTGGGTTA 58.849 45.455 0.00 0.00 0.00 2.85
7 8 1.541147 CCTGCTAATGTGTGTGGTTGG 59.459 52.381 0.00 0.00 0.00 3.77
15 16 4.760204 GGTAGTTTGTTCCTGCTAATGTGT 59.240 41.667 0.00 0.00 0.00 3.72
59 60 2.101582 AGGTAGCCAACTTAGCGAGATG 59.898 50.000 0.00 0.00 34.64 2.90
60 61 2.389715 AGGTAGCCAACTTAGCGAGAT 58.610 47.619 0.00 0.00 34.64 2.75
224 232 6.812998 ACTAGTCTCTACTGTCTACTGCTAG 58.187 44.000 0.00 0.00 36.36 3.42
269 277 9.553064 GCATCTACCTTTGTACTACTACTACTA 57.447 37.037 0.00 0.00 0.00 1.82
270 278 7.501892 GGCATCTACCTTTGTACTACTACTACT 59.498 40.741 0.00 0.00 0.00 2.57
271 279 7.501892 AGGCATCTACCTTTGTACTACTACTAC 59.498 40.741 0.00 0.00 36.28 2.73
272 280 7.501559 CAGGCATCTACCTTTGTACTACTACTA 59.498 40.741 0.00 0.00 38.26 1.82
273 281 6.321690 CAGGCATCTACCTTTGTACTACTACT 59.678 42.308 0.00 0.00 38.26 2.57
274 282 6.505272 CAGGCATCTACCTTTGTACTACTAC 58.495 44.000 0.00 0.00 38.26 2.73
275 283 5.068723 GCAGGCATCTACCTTTGTACTACTA 59.931 44.000 0.00 0.00 38.26 1.82
276 284 4.141914 GCAGGCATCTACCTTTGTACTACT 60.142 45.833 0.00 0.00 38.26 2.57
277 285 4.120589 GCAGGCATCTACCTTTGTACTAC 58.879 47.826 0.00 0.00 38.26 2.73
278 286 3.772572 TGCAGGCATCTACCTTTGTACTA 59.227 43.478 0.00 0.00 38.26 1.82
279 287 2.571653 TGCAGGCATCTACCTTTGTACT 59.428 45.455 0.00 0.00 38.26 2.73
280 288 2.985896 TGCAGGCATCTACCTTTGTAC 58.014 47.619 0.00 0.00 38.26 2.90
296 304 5.991328 ACAAATCTATACGAACCATGCAG 57.009 39.130 0.00 0.00 0.00 4.41
432 440 5.279156 GCAAGAAGACCAATTCCAACTGAAT 60.279 40.000 0.00 0.00 45.75 2.57
495 503 2.820178 TGTTCCTCTGGTCTGCTATGA 58.180 47.619 0.00 0.00 0.00 2.15
528 536 6.488006 AGAATGTTTTGACTGCTAACATCAGT 59.512 34.615 0.00 0.00 46.46 3.41
539 549 3.304928 GCTCCACCAGAATGTTTTGACTG 60.305 47.826 0.00 0.00 0.00 3.51
593 603 2.738846 GCATCACAGGGTAGCATTATCG 59.261 50.000 0.00 0.00 0.00 2.92
661 690 2.545322 GCCAATACACTACTCGGCCTAC 60.545 54.545 0.00 0.00 33.31 3.18
759 811 6.183360 CCACACAAGATCTAATTAGCACACAG 60.183 42.308 7.67 0.00 0.00 3.66
876 982 3.076032 ACCTTAGAAAATTGCCCAGACCT 59.924 43.478 0.00 0.00 0.00 3.85
1289 1402 7.563020 TGACTCTAGAAGATCTGCAAAATCAT 58.437 34.615 2.79 0.00 0.00 2.45
1354 1467 3.523564 ACTACCCTATGTGCAGGAAATGT 59.476 43.478 0.00 0.00 38.00 2.71
1383 1496 0.535553 TAAACACCGGTGACCTTGCC 60.536 55.000 40.21 0.00 0.00 4.52
1445 1558 7.872993 CAGGTAACATATCTTCCACGATTACAT 59.127 37.037 0.00 0.00 41.41 2.29
1472 1585 3.267483 TGTATGAGAGCCCTAAAAACGC 58.733 45.455 0.00 0.00 0.00 4.84
1626 1739 2.216046 TCAAGACAGCTGCAAAGAGTG 58.784 47.619 15.27 2.78 0.00 3.51
1696 1839 2.494870 GGCAAGCCTGTTTGAGATCATT 59.505 45.455 3.29 0.00 0.00 2.57
1697 1840 2.097825 GGCAAGCCTGTTTGAGATCAT 58.902 47.619 3.29 0.00 0.00 2.45
1698 1841 1.074405 AGGCAAGCCTGTTTGAGATCA 59.926 47.619 13.80 0.00 46.22 2.92
1699 1842 1.831580 AGGCAAGCCTGTTTGAGATC 58.168 50.000 13.80 0.00 46.22 2.75
1710 1853 1.741394 GCCATCAATTTGAGGCAAGCC 60.741 52.381 23.54 2.02 39.14 4.35
1711 1854 1.066716 TGCCATCAATTTGAGGCAAGC 60.067 47.619 26.48 16.82 42.96 4.01
1712 1855 3.132289 AGATGCCATCAATTTGAGGCAAG 59.868 43.478 29.49 11.81 46.07 4.01
1713 1856 3.101437 AGATGCCATCAATTTGAGGCAA 58.899 40.909 29.49 19.92 46.07 4.52
1714 1857 2.691526 GAGATGCCATCAATTTGAGGCA 59.308 45.455 28.68 28.68 46.57 4.75
1715 1858 2.035576 GGAGATGCCATCAATTTGAGGC 59.964 50.000 22.52 22.52 39.50 4.70
1716 1859 3.293337 TGGAGATGCCATCAATTTGAGG 58.707 45.455 7.56 4.64 43.33 3.86
1724 1867 4.641541 CAAGTATTGTTGGAGATGCCATCA 59.358 41.667 7.56 0.00 41.74 3.07
1725 1868 5.179045 CAAGTATTGTTGGAGATGCCATC 57.821 43.478 0.00 0.00 41.74 3.51
1753 1896 0.901827 TAGTCTTGGCTCGCCATCAA 59.098 50.000 12.00 0.00 46.64 2.57
2052 2195 3.732212 AGGGGTGTCGTGTTAGTTTAAC 58.268 45.455 0.00 0.00 39.11 2.01
2066 2209 3.923425 AGAAAAAGGGAAGATAGGGGTGT 59.077 43.478 0.00 0.00 0.00 4.16
2095 2238 9.701098 CCTTAAGATACGTGTGCCTAAATATTA 57.299 33.333 3.36 0.00 0.00 0.98
2125 2298 1.589716 GAGCCAGAGCGTTGCCAAAT 61.590 55.000 0.00 0.00 46.67 2.32
2136 2309 3.898509 CGGAGCTCGGAGCCAGAG 61.899 72.222 25.49 11.51 43.77 3.35
2173 2346 1.063469 AGAGTTTTCGTGTTTGGCGTG 59.937 47.619 0.00 0.00 0.00 5.34
2178 2351 6.083630 TCAACTTCAAGAGTTTTCGTGTTTG 58.916 36.000 0.00 0.00 46.34 2.93
2183 2356 5.064834 GGAGTTCAACTTCAAGAGTTTTCGT 59.935 40.000 0.00 0.00 46.34 3.85
2196 2369 0.538287 GGCAGCCAGGAGTTCAACTT 60.538 55.000 6.55 0.00 0.00 2.66
2261 2434 0.739112 CAGCTTCTGCGAGTTCCTCC 60.739 60.000 0.00 0.00 45.42 4.30
2281 2454 6.596106 TGTAAAACACTCAAACTGCAACTCTA 59.404 34.615 0.00 0.00 0.00 2.43
2289 2462 6.942886 TTTTGCTGTAAAACACTCAAACTG 57.057 33.333 0.00 0.00 33.48 3.16
2407 2580 0.801251 GCACATTCAGCTGGTCAGAC 59.199 55.000 15.13 0.00 0.00 3.51
2429 2602 3.313526 GCCACAAAGACATATAGCACTGG 59.686 47.826 0.00 0.00 0.00 4.00
2435 2608 4.051922 GAGTCGGCCACAAAGACATATAG 58.948 47.826 2.24 0.00 37.36 1.31
2443 2616 2.383527 GCTCGAGTCGGCCACAAAG 61.384 63.158 15.13 1.53 0.00 2.77
2458 2631 4.154347 CTCTGGCTGGGGTCGCTC 62.154 72.222 0.00 0.00 0.00 5.03
2479 2652 2.749621 GTTGAAATCTGTTCGGCAGGAT 59.250 45.455 7.79 0.00 45.08 3.24
2503 2676 4.285517 AGCTTCTCCTCTCTGAAACAATCA 59.714 41.667 0.00 0.00 36.38 2.57
2508 2681 4.021016 TGGTTAGCTTCTCCTCTCTGAAAC 60.021 45.833 0.00 0.00 0.00 2.78
2529 2702 3.130633 TCATCGACGGCAAATTCTATGG 58.869 45.455 0.00 0.00 0.00 2.74
2530 2703 3.185188 CCTCATCGACGGCAAATTCTATG 59.815 47.826 0.00 0.00 0.00 2.23
2533 2706 1.207089 TCCTCATCGACGGCAAATTCT 59.793 47.619 0.00 0.00 0.00 2.40
2552 2725 1.000145 TCTCCCCGGCCCAAAAATC 60.000 57.895 0.00 0.00 0.00 2.17
2563 2736 2.311688 ATTAACGGCAGCTCTCCCCG 62.312 60.000 9.37 9.37 46.97 5.73
2613 2786 5.762218 AGAATCTCTTGGCTGTATTGTATGC 59.238 40.000 0.00 0.00 0.00 3.14
2648 2821 6.776116 ACCTACGTATCTCATCTTGGATGTAA 59.224 38.462 0.00 0.00 0.00 2.41
2649 2822 6.304624 ACCTACGTATCTCATCTTGGATGTA 58.695 40.000 0.00 0.00 0.00 2.29
2650 2823 5.141182 ACCTACGTATCTCATCTTGGATGT 58.859 41.667 0.00 0.00 0.00 3.06
2668 2842 5.703592 TCACATTCACCAACAACATACCTAC 59.296 40.000 0.00 0.00 0.00 3.18
2755 2929 3.259374 CCTGTTCTATACTGGGCGATCAT 59.741 47.826 0.00 0.00 41.00 2.45
2757 2931 2.610727 GCCTGTTCTATACTGGGCGATC 60.611 54.545 0.00 0.00 43.93 3.69
2830 3004 1.357690 GCATCGCCATCACCATGTG 59.642 57.895 0.00 0.00 34.45 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.