Multiple sequence alignment - TraesCS7D01G536200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G536200 chr7D 100.000 2633 0 0 1 2633 627449621 627452253 0.000000e+00 4863.0
1 TraesCS7D01G536200 chr7D 89.390 1574 155 8 96 1662 613626228 613627796 0.000000e+00 1971.0
2 TraesCS7D01G536200 chr7D 89.641 1477 138 7 158 1627 613661554 613660086 0.000000e+00 1866.0
3 TraesCS7D01G536200 chr7D 94.000 350 12 5 21 368 613649380 613649722 3.000000e-144 521.0
4 TraesCS7D01G536200 chr7D 88.356 146 14 2 2481 2623 539818420 539818275 3.480000e-39 172.0
5 TraesCS7D01G536200 chr7D 100.000 36 0 0 2356 2391 627451885 627451920 1.690000e-07 67.6
6 TraesCS7D01G536200 chr7D 100.000 36 0 0 2265 2300 627451976 627452011 1.690000e-07 67.6
7 TraesCS7D01G536200 chr7A 88.966 1731 173 6 4 1726 705296923 705298643 0.000000e+00 2122.0
8 TraesCS7D01G536200 chr7A 88.525 1525 157 12 113 1627 705332668 705331152 0.000000e+00 1831.0
9 TraesCS7D01G536200 chr7A 95.238 42 1 1 2262 2302 108808706 108808747 6.080000e-07 65.8
10 TraesCS7D01G536200 chr7A 97.143 35 1 0 2356 2390 108808709 108808743 2.830000e-05 60.2
11 TraesCS7D01G536200 chr7B 91.205 1569 116 10 96 1658 704289533 704291085 0.000000e+00 2113.0
12 TraesCS7D01G536200 chr7B 88.604 1562 169 6 96 1653 704547808 704549364 0.000000e+00 1890.0
13 TraesCS7D01G536200 chr7B 87.951 1552 144 16 115 1627 704637537 704635990 0.000000e+00 1790.0
14 TraesCS7D01G536200 chr7B 94.129 1056 27 8 1 1047 728933612 728934641 0.000000e+00 1574.0
15 TraesCS7D01G536200 chr7B 95.556 900 24 2 1039 1922 728935193 728936092 0.000000e+00 1426.0
16 TraesCS7D01G536200 chr7B 95.809 692 27 2 967 1658 729217430 729218119 0.000000e+00 1116.0
17 TraesCS7D01G536200 chr7B 85.385 910 114 9 3 899 704318365 704317462 0.000000e+00 926.0
18 TraesCS7D01G536200 chr7B 90.855 503 31 9 1681 2173 729218114 729218611 0.000000e+00 660.0
19 TraesCS7D01G536200 chr7B 94.224 277 11 3 2361 2633 729219426 729219701 4.050000e-113 418.0
20 TraesCS7D01G536200 chr7B 91.892 148 9 2 2163 2308 729218759 729218905 1.240000e-48 204.0
21 TraesCS7D01G536200 chr1B 97.500 40 1 0 2260 2299 40284835 40284874 4.700000e-08 69.4
22 TraesCS7D01G536200 chr1B 100.000 35 0 0 2356 2390 40284840 40284874 6.080000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G536200 chr7D 627449621 627452253 2632 False 1666.066667 4863 100.0000 1 2633 3 chr7D.!!$F3 2632
1 TraesCS7D01G536200 chr7D 613626228 613627796 1568 False 1971.000000 1971 89.3900 96 1662 1 chr7D.!!$F1 1566
2 TraesCS7D01G536200 chr7D 613660086 613661554 1468 True 1866.000000 1866 89.6410 158 1627 1 chr7D.!!$R2 1469
3 TraesCS7D01G536200 chr7A 705296923 705298643 1720 False 2122.000000 2122 88.9660 4 1726 1 chr7A.!!$F1 1722
4 TraesCS7D01G536200 chr7A 705331152 705332668 1516 True 1831.000000 1831 88.5250 113 1627 1 chr7A.!!$R1 1514
5 TraesCS7D01G536200 chr7B 704289533 704291085 1552 False 2113.000000 2113 91.2050 96 1658 1 chr7B.!!$F1 1562
6 TraesCS7D01G536200 chr7B 704547808 704549364 1556 False 1890.000000 1890 88.6040 96 1653 1 chr7B.!!$F2 1557
7 TraesCS7D01G536200 chr7B 704635990 704637537 1547 True 1790.000000 1790 87.9510 115 1627 1 chr7B.!!$R2 1512
8 TraesCS7D01G536200 chr7B 728933612 728936092 2480 False 1500.000000 1574 94.8425 1 1922 2 chr7B.!!$F3 1921
9 TraesCS7D01G536200 chr7B 704317462 704318365 903 True 926.000000 926 85.3850 3 899 1 chr7B.!!$R1 896
10 TraesCS7D01G536200 chr7B 729217430 729219701 2271 False 599.500000 1116 93.1950 967 2633 4 chr7B.!!$F4 1666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 477 1.80512 CGAGGACGAACACCACTGTTT 60.805 52.381 0.0 0.0 40.93 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 3697 0.038892 CCGCATTTGCTTTGCTCTGT 60.039 50.0 0.51 0.0 37.96 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 60 2.568956 ACCATCTTGAGAGCAACAGCTA 59.431 45.455 0.00 0.00 39.10 3.32
78 88 4.012374 TCCTACAGAAACTACGACCGATT 58.988 43.478 0.00 0.00 0.00 3.34
79 89 4.103357 CCTACAGAAACTACGACCGATTG 58.897 47.826 0.00 0.00 0.00 2.67
451 477 1.805120 CGAGGACGAACACCACTGTTT 60.805 52.381 0.00 0.00 40.93 2.83
740 772 2.629656 CCTTCCTGGCGTGCCTTTG 61.630 63.158 12.84 2.57 36.94 2.77
771 803 4.643387 GTGGCCGCTGGGTTCAGT 62.643 66.667 9.68 0.00 42.78 3.41
937 978 2.026905 GCGAGGAAGAGGAGGACATCT 61.027 57.143 0.00 0.00 38.88 2.90
1692 2326 7.973388 GGAAATCTGTATGATCGATCTTCTAGG 59.027 40.741 25.02 11.49 33.57 3.02
1844 2494 1.535462 CGCCCTCGTTCTTTCAAACAT 59.465 47.619 0.00 0.00 0.00 2.71
1959 2610 9.655769 GCATTATAGAACATTTGTGTATGTCAG 57.344 33.333 0.00 0.00 37.76 3.51
1965 2616 3.753272 ACATTTGTGTATGTCAGTGGAGC 59.247 43.478 0.00 0.00 33.58 4.70
1974 2625 0.524862 GTCAGTGGAGCATTGCCAAG 59.475 55.000 4.70 0.00 37.12 3.61
1989 2640 3.456280 TGCCAAGTTTCTGAACATTTGC 58.544 40.909 0.00 0.00 38.26 3.68
1994 2645 4.483476 AGTTTCTGAACATTTGCGTACC 57.517 40.909 0.00 0.00 38.26 3.34
1996 2647 2.157834 TCTGAACATTTGCGTACCGT 57.842 45.000 0.00 0.00 0.00 4.83
2008 2659 1.670674 GCGTACCGTCAGTTCCATCAA 60.671 52.381 0.00 0.00 0.00 2.57
2016 2667 4.093408 CCGTCAGTTCCATCAACATTACAG 59.907 45.833 0.00 0.00 37.48 2.74
2058 2709 9.337396 TGTCAATTTCAGTTATAAGTGTTCTGT 57.663 29.630 17.79 1.64 0.00 3.41
2119 2770 5.046529 GTGGAGTATTCTCACACTGCTATG 58.953 45.833 1.51 0.00 42.05 2.23
2146 2797 7.192913 AGCATTTTCGCGATATTTTAATGTGA 58.807 30.769 10.88 0.00 36.85 3.58
2196 3006 7.120873 TCAGTTACCTGTCTAGTCTATTGTCAC 59.879 40.741 0.00 0.00 39.82 3.67
2201 3011 7.324178 ACCTGTCTAGTCTATTGTCACAATTC 58.676 38.462 8.69 0.44 0.00 2.17
2206 3016 9.209175 GTCTAGTCTATTGTCACAATTCAGTTT 57.791 33.333 8.69 0.00 0.00 2.66
2287 3097 5.639082 CACACATGCTAGAGTAAATCACACA 59.361 40.000 0.00 0.00 0.00 3.72
2328 3649 4.901849 TGGCTCCAATAGTGCTAGAGTAAT 59.098 41.667 0.00 0.00 35.28 1.89
2329 3650 5.011125 TGGCTCCAATAGTGCTAGAGTAATC 59.989 44.000 0.00 0.00 35.28 1.75
2330 3651 5.011125 GGCTCCAATAGTGCTAGAGTAATCA 59.989 44.000 0.00 0.00 35.28 2.57
2331 3652 5.923684 GCTCCAATAGTGCTAGAGTAATCAC 59.076 44.000 0.00 0.00 32.10 3.06
2332 3653 6.461648 GCTCCAATAGTGCTAGAGTAATCACA 60.462 42.308 0.00 0.00 32.10 3.58
2333 3654 6.806751 TCCAATAGTGCTAGAGTAATCACAC 58.193 40.000 0.00 0.00 32.25 3.82
2334 3655 6.379988 TCCAATAGTGCTAGAGTAATCACACA 59.620 38.462 11.74 0.00 32.25 3.72
2335 3656 6.699204 CCAATAGTGCTAGAGTAATCACACAG 59.301 42.308 11.74 0.00 32.25 3.66
2336 3657 7.416777 CCAATAGTGCTAGAGTAATCACACAGA 60.417 40.741 11.74 2.57 32.25 3.41
2337 3658 5.574891 AGTGCTAGAGTAATCACACAGAG 57.425 43.478 11.74 0.00 32.25 3.35
2338 3659 4.109050 GTGCTAGAGTAATCACACAGAGC 58.891 47.826 0.00 0.00 31.52 4.09
2339 3660 3.763897 TGCTAGAGTAATCACACAGAGCA 59.236 43.478 0.00 0.00 35.58 4.26
2340 3661 4.220602 TGCTAGAGTAATCACACAGAGCAA 59.779 41.667 0.00 0.00 35.27 3.91
2341 3662 5.171476 GCTAGAGTAATCACACAGAGCAAA 58.829 41.667 0.00 0.00 31.35 3.68
2342 3663 5.814705 GCTAGAGTAATCACACAGAGCAAAT 59.185 40.000 0.00 0.00 31.35 2.32
2343 3664 6.314896 GCTAGAGTAATCACACAGAGCAAATT 59.685 38.462 0.00 0.00 31.35 1.82
2344 3665 6.734104 AGAGTAATCACACAGAGCAAATTC 57.266 37.500 0.00 0.00 0.00 2.17
2345 3666 6.233434 AGAGTAATCACACAGAGCAAATTCA 58.767 36.000 0.00 0.00 0.00 2.57
2346 3667 6.370994 AGAGTAATCACACAGAGCAAATTCAG 59.629 38.462 0.00 0.00 0.00 3.02
2347 3668 6.000219 AGTAATCACACAGAGCAAATTCAGT 59.000 36.000 0.00 0.00 0.00 3.41
2348 3669 5.779529 AATCACACAGAGCAAATTCAGTT 57.220 34.783 0.00 0.00 0.00 3.16
2349 3670 6.882610 AATCACACAGAGCAAATTCAGTTA 57.117 33.333 0.00 0.00 0.00 2.24
2350 3671 6.882610 ATCACACAGAGCAAATTCAGTTAA 57.117 33.333 0.00 0.00 0.00 2.01
2351 3672 6.060028 TCACACAGAGCAAATTCAGTTAAC 57.940 37.500 0.00 0.00 0.00 2.01
2352 3673 5.822519 TCACACAGAGCAAATTCAGTTAACT 59.177 36.000 1.12 1.12 0.00 2.24
2353 3674 6.989759 TCACACAGAGCAAATTCAGTTAACTA 59.010 34.615 8.04 0.00 0.00 2.24
2354 3675 7.661437 TCACACAGAGCAAATTCAGTTAACTAT 59.339 33.333 8.04 0.00 0.00 2.12
2355 3676 8.935844 CACACAGAGCAAATTCAGTTAACTATA 58.064 33.333 8.04 0.00 0.00 1.31
2356 3677 8.936864 ACACAGAGCAAATTCAGTTAACTATAC 58.063 33.333 8.04 0.00 0.00 1.47
2357 3678 8.935844 CACAGAGCAAATTCAGTTAACTATACA 58.064 33.333 8.04 0.00 0.00 2.29
2358 3679 8.936864 ACAGAGCAAATTCAGTTAACTATACAC 58.063 33.333 8.04 0.00 0.00 2.90
2359 3680 8.935844 CAGAGCAAATTCAGTTAACTATACACA 58.064 33.333 8.04 0.00 0.00 3.72
2360 3681 9.672673 AGAGCAAATTCAGTTAACTATACACAT 57.327 29.630 8.04 0.00 0.00 3.21
2361 3682 9.708222 GAGCAAATTCAGTTAACTATACACATG 57.292 33.333 8.04 3.63 0.00 3.21
2362 3683 8.184192 AGCAAATTCAGTTAACTATACACATGC 58.816 33.333 8.04 12.50 0.00 4.06
2363 3684 8.184192 GCAAATTCAGTTAACTATACACATGCT 58.816 33.333 8.04 0.00 0.00 3.79
2367 3688 9.973450 ATTCAGTTAACTATACACATGCTAGAG 57.027 33.333 8.04 0.00 0.00 2.43
2368 3689 8.521170 TCAGTTAACTATACACATGCTAGAGT 57.479 34.615 8.04 0.00 0.00 3.24
2369 3690 9.623000 TCAGTTAACTATACACATGCTAGAGTA 57.377 33.333 8.04 0.00 0.00 2.59
2375 3696 9.751542 AACTATACACATGCTAGAGTAAATCAC 57.248 33.333 0.00 0.00 0.00 3.06
2376 3697 8.914011 ACTATACACATGCTAGAGTAAATCACA 58.086 33.333 0.00 0.00 0.00 3.58
2377 3698 9.186323 CTATACACATGCTAGAGTAAATCACAC 57.814 37.037 0.00 0.00 0.00 3.82
2403 3724 3.518003 GCAAATGCGGGAGATGCT 58.482 55.556 2.73 0.00 34.29 3.79
2439 3760 8.585471 TCTTCAGGATTTTCTTCTTGCATTAT 57.415 30.769 0.00 0.00 0.00 1.28
2482 3807 6.455360 AAGCTTGTCTTGACTGAATTTGAA 57.545 33.333 0.00 0.00 32.79 2.69
2514 3839 5.368230 AGTTCTCTCCTTTTCTTCTTCAGGT 59.632 40.000 0.00 0.00 0.00 4.00
2549 3874 9.850198 TTCCAGTATTGATAATGATCATGACAA 57.150 29.630 9.46 15.13 41.77 3.18
2563 3888 7.532571 TGATCATGACAACTTTGCATAAAGAG 58.467 34.615 0.00 0.56 44.87 2.85
2569 3894 6.978080 TGACAACTTTGCATAAAGAGGAAAAC 59.022 34.615 5.15 0.00 44.87 2.43
2632 3957 8.316497 TCATCTGAATATTTCTCAAGAGGAGT 57.684 34.615 0.00 0.00 44.40 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 60 4.635324 GTCGTAGTTTCTGTAGGAGCTAGT 59.365 45.833 0.00 0.00 0.00 2.57
63 73 0.643820 CGGCAATCGGTCGTAGTTTC 59.356 55.000 0.00 0.00 40.47 2.78
78 88 1.976474 GGCTTGGAACCAATCGGCA 60.976 57.895 14.83 0.00 35.20 5.69
79 89 1.322538 ATGGCTTGGAACCAATCGGC 61.323 55.000 6.74 9.11 41.49 5.54
451 477 3.749064 GCCGTCTCCAGTGAGCGA 61.749 66.667 0.00 0.00 39.13 4.93
740 772 4.394712 CCACCCTGACACCCTCGC 62.395 72.222 0.00 0.00 0.00 5.03
771 803 2.654877 GGAAACAGGTCGGCGAGA 59.345 61.111 11.20 0.00 0.00 4.04
937 978 1.300620 CGTCCAGAAGCACGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
990 1040 0.034059 CCCTCATCATAGCACGGACC 59.966 60.000 0.00 0.00 0.00 4.46
1844 2494 7.639113 ACAGTTTAGAACCAGAAATTGTCAA 57.361 32.000 0.00 0.00 32.04 3.18
1959 2610 1.615392 AGAAACTTGGCAATGCTCCAC 59.385 47.619 4.82 0.00 32.45 4.02
1965 2616 5.559417 GCAAATGTTCAGAAACTTGGCAATG 60.559 40.000 0.00 0.00 36.30 2.82
1994 2645 4.690748 ACTGTAATGTTGATGGAACTGACG 59.309 41.667 0.00 0.00 35.37 4.35
1996 2647 5.003160 CCACTGTAATGTTGATGGAACTGA 58.997 41.667 0.00 0.00 35.37 3.41
2008 2659 7.152645 CAGTACTTAACACTCCACTGTAATGT 58.847 38.462 0.00 0.00 31.06 2.71
2016 2667 7.225931 TGAAATTGACAGTACTTAACACTCCAC 59.774 37.037 0.00 0.00 0.00 4.02
2034 2685 9.554395 TGACAGAACACTTATAACTGAAATTGA 57.446 29.630 6.95 0.00 33.53 2.57
2119 2770 6.636850 ACATTAAAATATCGCGAAAATGCTCC 59.363 34.615 15.24 0.00 0.00 4.70
2128 2779 9.729023 AATGAAAATCACATTAAAATATCGCGA 57.271 25.926 13.09 13.09 36.40 5.87
2129 2780 9.978973 GAATGAAAATCACATTAAAATATCGCG 57.021 29.630 0.00 0.00 37.96 5.87
2180 2988 8.764524 AACTGAATTGTGACAATAGACTAGAC 57.235 34.615 11.70 0.00 0.00 2.59
2232 3042 7.503566 TCCTTGAAAATGAATAGGATGGATGTC 59.496 37.037 0.00 0.00 30.30 3.06
2287 3097 2.762745 CCATTTGCTTTGCTTTGCTCT 58.237 42.857 0.00 0.00 0.00 4.09
2313 3634 6.238897 GCTCTGTGTGATTACTCTAGCACTAT 60.239 42.308 10.51 0.00 33.84 2.12
2328 3649 5.822519 AGTTAACTGAATTTGCTCTGTGTGA 59.177 36.000 7.48 0.00 0.00 3.58
2329 3650 6.064846 AGTTAACTGAATTTGCTCTGTGTG 57.935 37.500 7.48 0.00 0.00 3.82
2330 3651 7.986085 ATAGTTAACTGAATTTGCTCTGTGT 57.014 32.000 18.56 0.00 0.00 3.72
2331 3652 8.935844 TGTATAGTTAACTGAATTTGCTCTGTG 58.064 33.333 18.56 0.00 0.00 3.66
2332 3653 8.936864 GTGTATAGTTAACTGAATTTGCTCTGT 58.063 33.333 18.56 0.00 0.00 3.41
2333 3654 8.935844 TGTGTATAGTTAACTGAATTTGCTCTG 58.064 33.333 18.56 0.00 0.00 3.35
2334 3655 9.672673 ATGTGTATAGTTAACTGAATTTGCTCT 57.327 29.630 18.56 0.00 0.00 4.09
2335 3656 9.708222 CATGTGTATAGTTAACTGAATTTGCTC 57.292 33.333 18.56 3.78 0.00 4.26
2336 3657 8.184192 GCATGTGTATAGTTAACTGAATTTGCT 58.816 33.333 18.56 0.00 0.00 3.91
2337 3658 8.184192 AGCATGTGTATAGTTAACTGAATTTGC 58.816 33.333 18.56 16.05 0.00 3.68
2341 3662 9.973450 CTCTAGCATGTGTATAGTTAACTGAAT 57.027 33.333 18.56 7.22 0.00 2.57
2342 3663 8.967918 ACTCTAGCATGTGTATAGTTAACTGAA 58.032 33.333 18.56 3.03 0.00 3.02
2343 3664 8.521170 ACTCTAGCATGTGTATAGTTAACTGA 57.479 34.615 18.56 3.16 0.00 3.41
2349 3670 9.751542 GTGATTTACTCTAGCATGTGTATAGTT 57.248 33.333 0.00 0.00 0.00 2.24
2350 3671 8.914011 TGTGATTTACTCTAGCATGTGTATAGT 58.086 33.333 0.00 0.00 0.00 2.12
2351 3672 9.186323 GTGTGATTTACTCTAGCATGTGTATAG 57.814 37.037 0.00 0.00 0.00 1.31
2352 3673 8.691797 TGTGTGATTTACTCTAGCATGTGTATA 58.308 33.333 0.00 0.00 0.00 1.47
2353 3674 7.555965 TGTGTGATTTACTCTAGCATGTGTAT 58.444 34.615 0.00 0.00 0.00 2.29
2354 3675 6.930731 TGTGTGATTTACTCTAGCATGTGTA 58.069 36.000 0.00 0.00 0.00 2.90
2355 3676 5.793817 TGTGTGATTTACTCTAGCATGTGT 58.206 37.500 0.00 0.00 0.00 3.72
2356 3677 6.101997 TCTGTGTGATTTACTCTAGCATGTG 58.898 40.000 0.00 0.00 0.00 3.21
2357 3678 6.286240 TCTGTGTGATTTACTCTAGCATGT 57.714 37.500 0.00 0.00 0.00 3.21
2358 3679 5.233902 GCTCTGTGTGATTTACTCTAGCATG 59.766 44.000 0.00 0.00 35.01 4.06
2359 3680 5.105187 TGCTCTGTGTGATTTACTCTAGCAT 60.105 40.000 0.00 0.00 37.46 3.79
2360 3681 4.220602 TGCTCTGTGTGATTTACTCTAGCA 59.779 41.667 0.00 0.00 38.70 3.49
2361 3682 4.748892 TGCTCTGTGTGATTTACTCTAGC 58.251 43.478 0.00 0.00 35.24 3.42
2362 3683 6.183360 GCTTTGCTCTGTGTGATTTACTCTAG 60.183 42.308 0.00 0.00 0.00 2.43
2363 3684 5.639506 GCTTTGCTCTGTGTGATTTACTCTA 59.360 40.000 0.00 0.00 0.00 2.43
2364 3685 4.453819 GCTTTGCTCTGTGTGATTTACTCT 59.546 41.667 0.00 0.00 0.00 3.24
2365 3686 4.214119 TGCTTTGCTCTGTGTGATTTACTC 59.786 41.667 0.00 0.00 0.00 2.59
2366 3687 4.136796 TGCTTTGCTCTGTGTGATTTACT 58.863 39.130 0.00 0.00 0.00 2.24
2367 3688 4.488126 TGCTTTGCTCTGTGTGATTTAC 57.512 40.909 0.00 0.00 0.00 2.01
2368 3689 5.512753 TTTGCTTTGCTCTGTGTGATTTA 57.487 34.783 0.00 0.00 0.00 1.40
2369 3690 4.389890 TTTGCTTTGCTCTGTGTGATTT 57.610 36.364 0.00 0.00 0.00 2.17
2370 3691 4.304110 CATTTGCTTTGCTCTGTGTGATT 58.696 39.130 0.00 0.00 0.00 2.57
2371 3692 3.859627 GCATTTGCTTTGCTCTGTGTGAT 60.860 43.478 0.00 0.00 37.14 3.06
2372 3693 2.544277 GCATTTGCTTTGCTCTGTGTGA 60.544 45.455 0.00 0.00 37.14 3.58
2373 3694 1.790623 GCATTTGCTTTGCTCTGTGTG 59.209 47.619 0.00 0.00 37.14 3.82
2374 3695 1.601162 CGCATTTGCTTTGCTCTGTGT 60.601 47.619 0.51 0.00 37.96 3.72
2375 3696 1.057636 CGCATTTGCTTTGCTCTGTG 58.942 50.000 0.51 0.00 37.96 3.66
2376 3697 0.038892 CCGCATTTGCTTTGCTCTGT 60.039 50.000 0.51 0.00 37.96 3.41
2377 3698 0.734942 CCCGCATTTGCTTTGCTCTG 60.735 55.000 0.51 0.00 37.96 3.35
2463 3784 9.195411 GCATAAATTCAAATTCAGTCAAGACAA 57.805 29.630 2.72 0.00 0.00 3.18
2466 3787 8.579006 ACTGCATAAATTCAAATTCAGTCAAGA 58.421 29.630 0.00 0.00 29.16 3.02
2467 3788 8.752766 ACTGCATAAATTCAAATTCAGTCAAG 57.247 30.769 0.00 0.00 29.16 3.02
2482 3807 7.887495 AGAAGAAAAGGAGAGAACTGCATAAAT 59.113 33.333 0.00 0.00 36.93 1.40
2549 3874 9.529325 GTTTAAGTTTTCCTCTTTATGCAAAGT 57.471 29.630 0.00 0.00 41.66 2.66
2563 3888 7.739498 TCCACATCACTAGTTTAAGTTTTCC 57.261 36.000 0.00 0.00 0.00 3.13
2569 3894 8.786826 TTAACCATCCACATCACTAGTTTAAG 57.213 34.615 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.