Multiple sequence alignment - TraesCS7D01G536100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G536100 chr7D 100.000 3578 0 0 1 3578 627452265 627448688 0.000000e+00 6608.0
1 TraesCS7D01G536100 chr7D 88.194 1711 176 20 984 2678 613627796 613626096 0.000000e+00 2017.0
2 TraesCS7D01G536100 chr7D 89.641 1477 138 7 1019 2488 613660086 613661554 0.000000e+00 1866.0
3 TraesCS7D01G536100 chr7D 94.000 350 12 5 2278 2625 613649722 613649380 4.090000e-144 521.0
4 TraesCS7D01G536100 chr7D 88.356 146 14 2 23 165 539818275 539818420 4.750000e-39 172.0
5 TraesCS7D01G536100 chr7D 100.000 36 0 0 255 290 627451920 627451885 2.310000e-07 67.6
6 TraesCS7D01G536100 chr7D 100.000 36 0 0 346 381 627452011 627451976 2.310000e-07 67.6
7 TraesCS7D01G536100 chr7A 89.109 1763 173 7 920 2674 705298643 705296892 0.000000e+00 2174.0
8 TraesCS7D01G536100 chr7A 87.016 1679 166 28 1019 2673 705331152 705332802 0.000000e+00 1845.0
9 TraesCS7D01G536100 chr7A 90.110 455 42 1 3010 3461 17768332 17768786 3.980000e-164 588.0
10 TraesCS7D01G536100 chr7A 86.983 484 39 14 3115 3577 548386354 548385874 1.140000e-144 523.0
11 TraesCS7D01G536100 chr7A 95.238 42 1 1 344 384 108808747 108808706 8.290000e-07 65.8
12 TraesCS7D01G536100 chr7A 97.143 35 1 0 256 290 108808743 108808709 3.860000e-05 60.2
13 TraesCS7D01G536100 chr7B 89.738 1715 136 20 988 2678 704291085 704289387 0.000000e+00 2156.0
14 TraesCS7D01G536100 chr7B 88.604 1562 169 6 993 2550 704549364 704547808 0.000000e+00 1890.0
15 TraesCS7D01G536100 chr7B 86.417 1708 155 34 1019 2673 704635990 704637673 0.000000e+00 1797.0
16 TraesCS7D01G536100 chr7B 93.881 1193 35 10 1599 2780 728934641 728933476 0.000000e+00 1764.0
17 TraesCS7D01G536100 chr7B 95.556 900 24 2 724 1607 728936092 728935193 0.000000e+00 1426.0
18 TraesCS7D01G536100 chr7B 95.809 692 27 2 988 1679 729218119 729217430 0.000000e+00 1116.0
19 TraesCS7D01G536100 chr7B 85.426 940 117 10 1747 2673 704317462 704318394 0.000000e+00 959.0
20 TraesCS7D01G536100 chr7B 93.015 587 31 8 2997 3577 735850481 735851063 0.000000e+00 848.0
21 TraesCS7D01G536100 chr7B 90.855 503 31 9 473 965 729218611 729218114 0.000000e+00 660.0
22 TraesCS7D01G536100 chr7B 94.464 289 11 3 1 285 729219713 729219426 1.180000e-119 440.0
23 TraesCS7D01G536100 chr7B 91.892 148 9 2 338 483 729218905 729218759 1.680000e-48 204.0
24 TraesCS7D01G536100 chr7B 88.199 161 18 1 2823 2983 312385100 312384941 1.310000e-44 191.0
25 TraesCS7D01G536100 chr1D 93.677 601 29 6 2982 3577 30884394 30884990 0.000000e+00 891.0
26 TraesCS7D01G536100 chr1D 93.189 602 32 5 2982 3577 30780997 30781595 0.000000e+00 876.0
27 TraesCS7D01G536100 chr1D 92.821 599 31 7 2986 3577 30825456 30826049 0.000000e+00 857.0
28 TraesCS7D01G536100 chr6D 93.137 612 23 5 2982 3577 464256487 464255879 0.000000e+00 880.0
29 TraesCS7D01G536100 chr6D 93.322 584 29 5 2997 3577 199358135 199358711 0.000000e+00 854.0
30 TraesCS7D01G536100 chr2D 93.115 610 27 4 2982 3578 394234126 394234733 0.000000e+00 880.0
31 TraesCS7D01G536100 chr2D 89.672 610 34 11 2982 3578 544900062 544900655 0.000000e+00 750.0
32 TraesCS7D01G536100 chr2D 86.667 615 49 6 2982 3578 619253491 619252892 0.000000e+00 651.0
33 TraesCS7D01G536100 chr2D 88.290 538 38 8 3061 3578 566717785 566717253 3.920000e-174 621.0
34 TraesCS7D01G536100 chr2D 88.060 536 29 13 3061 3578 615325535 615326053 1.420000e-168 603.0
35 TraesCS7D01G536100 chr2D 86.905 168 21 1 2816 2983 38556756 38556590 1.700000e-43 187.0
36 TraesCS7D01G536100 chr2D 85.714 168 23 1 2816 2983 473430823 473430989 3.670000e-40 176.0
37 TraesCS7D01G536100 chr3D 94.231 572 24 7 3010 3578 612056891 612056326 0.000000e+00 865.0
38 TraesCS7D01G536100 chr6A 93.003 586 33 4 2996 3578 542834855 542835435 0.000000e+00 848.0
39 TraesCS7D01G536100 chr2B 85.904 603 51 22 2986 3577 47531152 47530573 2.360000e-171 612.0
40 TraesCS7D01G536100 chr2B 85.802 162 6 6 3419 3577 702316578 702316431 4.780000e-34 156.0
41 TraesCS7D01G536100 chr4A 87.027 555 37 12 3029 3577 679229273 679229798 8.550000e-166 593.0
42 TraesCS7D01G536100 chr4A 84.518 633 51 22 2986 3577 635414670 635414044 1.850000e-162 582.0
43 TraesCS7D01G536100 chr4A 84.975 599 46 18 2986 3575 697353484 697354047 5.180000e-158 568.0
44 TraesCS7D01G536100 chr3A 85.284 598 47 16 2986 3577 745839934 745839372 2.390000e-161 579.0
45 TraesCS7D01G536100 chr5B 88.199 161 18 1 2823 2983 505772771 505772612 1.310000e-44 191.0
46 TraesCS7D01G536100 chr5B 86.957 161 20 1 2823 2983 382366953 382366794 2.840000e-41 180.0
47 TraesCS7D01G536100 chr5B 85.714 168 22 2 2816 2983 474762720 474762885 3.670000e-40 176.0
48 TraesCS7D01G536100 chr4B 88.199 161 17 2 2823 2983 75529832 75529990 1.310000e-44 191.0
49 TraesCS7D01G536100 chr5D 86.875 160 19 2 2825 2983 558343737 558343579 1.020000e-40 178.0
50 TraesCS7D01G536100 chr2A 85.976 164 22 1 2817 2980 769154351 769154513 1.320000e-39 174.0
51 TraesCS7D01G536100 chr1B 97.500 40 1 0 347 386 40284874 40284835 6.410000e-08 69.4
52 TraesCS7D01G536100 chr1B 100.000 35 0 0 256 290 40284874 40284840 8.290000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G536100 chr7D 627448688 627452265 3577 True 2247.733333 6608 100.0000 1 3578 3 chr7D.!!$R3 3577
1 TraesCS7D01G536100 chr7D 613626096 613627796 1700 True 2017.000000 2017 88.1940 984 2678 1 chr7D.!!$R1 1694
2 TraesCS7D01G536100 chr7D 613660086 613661554 1468 False 1866.000000 1866 89.6410 1019 2488 1 chr7D.!!$F2 1469
3 TraesCS7D01G536100 chr7A 705296892 705298643 1751 True 2174.000000 2174 89.1090 920 2674 1 chr7A.!!$R2 1754
4 TraesCS7D01G536100 chr7A 705331152 705332802 1650 False 1845.000000 1845 87.0160 1019 2673 1 chr7A.!!$F2 1654
5 TraesCS7D01G536100 chr7B 704289387 704291085 1698 True 2156.000000 2156 89.7380 988 2678 1 chr7B.!!$R2 1690
6 TraesCS7D01G536100 chr7B 704547808 704549364 1556 True 1890.000000 1890 88.6040 993 2550 1 chr7B.!!$R3 1557
7 TraesCS7D01G536100 chr7B 704635990 704637673 1683 False 1797.000000 1797 86.4170 1019 2673 1 chr7B.!!$F2 1654
8 TraesCS7D01G536100 chr7B 728933476 728936092 2616 True 1595.000000 1764 94.7185 724 2780 2 chr7B.!!$R4 2056
9 TraesCS7D01G536100 chr7B 704317462 704318394 932 False 959.000000 959 85.4260 1747 2673 1 chr7B.!!$F1 926
10 TraesCS7D01G536100 chr7B 735850481 735851063 582 False 848.000000 848 93.0150 2997 3577 1 chr7B.!!$F3 580
11 TraesCS7D01G536100 chr7B 729217430 729219713 2283 True 605.000000 1116 93.2550 1 1679 4 chr7B.!!$R5 1678
12 TraesCS7D01G536100 chr1D 30884394 30884990 596 False 891.000000 891 93.6770 2982 3577 1 chr1D.!!$F3 595
13 TraesCS7D01G536100 chr1D 30780997 30781595 598 False 876.000000 876 93.1890 2982 3577 1 chr1D.!!$F1 595
14 TraesCS7D01G536100 chr1D 30825456 30826049 593 False 857.000000 857 92.8210 2986 3577 1 chr1D.!!$F2 591
15 TraesCS7D01G536100 chr6D 464255879 464256487 608 True 880.000000 880 93.1370 2982 3577 1 chr6D.!!$R1 595
16 TraesCS7D01G536100 chr6D 199358135 199358711 576 False 854.000000 854 93.3220 2997 3577 1 chr6D.!!$F1 580
17 TraesCS7D01G536100 chr2D 394234126 394234733 607 False 880.000000 880 93.1150 2982 3578 1 chr2D.!!$F1 596
18 TraesCS7D01G536100 chr2D 544900062 544900655 593 False 750.000000 750 89.6720 2982 3578 1 chr2D.!!$F3 596
19 TraesCS7D01G536100 chr2D 619252892 619253491 599 True 651.000000 651 86.6670 2982 3578 1 chr2D.!!$R3 596
20 TraesCS7D01G536100 chr2D 566717253 566717785 532 True 621.000000 621 88.2900 3061 3578 1 chr2D.!!$R2 517
21 TraesCS7D01G536100 chr2D 615325535 615326053 518 False 603.000000 603 88.0600 3061 3578 1 chr2D.!!$F4 517
22 TraesCS7D01G536100 chr3D 612056326 612056891 565 True 865.000000 865 94.2310 3010 3578 1 chr3D.!!$R1 568
23 TraesCS7D01G536100 chr6A 542834855 542835435 580 False 848.000000 848 93.0030 2996 3578 1 chr6A.!!$F1 582
24 TraesCS7D01G536100 chr2B 47530573 47531152 579 True 612.000000 612 85.9040 2986 3577 1 chr2B.!!$R1 591
25 TraesCS7D01G536100 chr4A 679229273 679229798 525 False 593.000000 593 87.0270 3029 3577 1 chr4A.!!$F1 548
26 TraesCS7D01G536100 chr4A 635414044 635414670 626 True 582.000000 582 84.5180 2986 3577 1 chr4A.!!$R1 591
27 TraesCS7D01G536100 chr4A 697353484 697354047 563 False 568.000000 568 84.9750 2986 3575 1 chr4A.!!$F2 589
28 TraesCS7D01G536100 chr3A 745839372 745839934 562 True 579.000000 579 85.2840 2986 3577 1 chr3A.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 272 0.734942 CCCGCATTTGCTTTGCTCTG 60.735 55.0 0.51 0.0 37.96 3.35 F
1654 2930 0.034059 CCCTCATCATAGCACGGACC 59.966 60.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2193 3490 1.805120 CGAGGACGAACACCACTGTTT 60.805 52.381 0.0 0.0 40.93 2.83 R
2931 4280 0.032912 TACACGGATGACCTAGCCCA 60.033 55.000 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 8.786826 TTAACCATCCACATCACTAGTTTAAG 57.213 34.615 0.00 0.00 0.00 1.85
81 82 7.739498 TCCACATCACTAGTTTAAGTTTTCC 57.261 36.000 0.00 0.00 0.00 3.13
95 96 9.529325 GTTTAAGTTTTCCTCTTTATGCAAAGT 57.471 29.630 0.00 0.00 41.66 2.66
162 163 7.887495 AGAAGAAAAGGAGAGAACTGCATAAAT 59.113 33.333 0.00 0.00 36.93 1.40
176 177 9.195411 GAACTGCATAAATTCAAATTCAGTCAA 57.805 29.630 7.56 0.00 32.13 3.18
177 178 8.752766 ACTGCATAAATTCAAATTCAGTCAAG 57.247 30.769 0.00 0.00 29.16 3.02
181 182 9.195411 GCATAAATTCAAATTCAGTCAAGACAA 57.805 29.630 2.72 0.00 0.00 3.18
267 272 0.734942 CCCGCATTTGCTTTGCTCTG 60.735 55.000 0.51 0.00 37.96 3.35
274 279 4.304110 CATTTGCTTTGCTCTGTGTGATT 58.696 39.130 0.00 0.00 0.00 2.57
275 280 4.389890 TTTGCTTTGCTCTGTGTGATTT 57.610 36.364 0.00 0.00 0.00 2.17
276 281 5.512753 TTTGCTTTGCTCTGTGTGATTTA 57.487 34.783 0.00 0.00 0.00 1.40
277 282 4.488126 TGCTTTGCTCTGTGTGATTTAC 57.512 40.909 0.00 0.00 0.00 2.01
278 283 4.136796 TGCTTTGCTCTGTGTGATTTACT 58.863 39.130 0.00 0.00 0.00 2.24
279 284 4.214119 TGCTTTGCTCTGTGTGATTTACTC 59.786 41.667 0.00 0.00 0.00 2.59
280 285 4.453819 GCTTTGCTCTGTGTGATTTACTCT 59.546 41.667 0.00 0.00 0.00 3.24
281 286 5.639506 GCTTTGCTCTGTGTGATTTACTCTA 59.360 40.000 0.00 0.00 0.00 2.43
282 287 6.183360 GCTTTGCTCTGTGTGATTTACTCTAG 60.183 42.308 0.00 0.00 0.00 2.43
283 288 4.748892 TGCTCTGTGTGATTTACTCTAGC 58.251 43.478 0.00 0.00 35.24 3.42
284 289 4.220602 TGCTCTGTGTGATTTACTCTAGCA 59.779 41.667 0.00 0.00 38.70 3.49
285 290 5.105187 TGCTCTGTGTGATTTACTCTAGCAT 60.105 40.000 0.00 0.00 37.46 3.79
286 291 5.233902 GCTCTGTGTGATTTACTCTAGCATG 59.766 44.000 0.00 0.00 35.01 4.06
287 292 6.286240 TCTGTGTGATTTACTCTAGCATGT 57.714 37.500 0.00 0.00 0.00 3.21
288 293 6.101997 TCTGTGTGATTTACTCTAGCATGTG 58.898 40.000 0.00 0.00 0.00 3.21
289 294 5.793817 TGTGTGATTTACTCTAGCATGTGT 58.206 37.500 0.00 0.00 0.00 3.72
290 295 6.930731 TGTGTGATTTACTCTAGCATGTGTA 58.069 36.000 0.00 0.00 0.00 2.90
291 296 7.555965 TGTGTGATTTACTCTAGCATGTGTAT 58.444 34.615 0.00 0.00 0.00 2.29
292 297 8.691797 TGTGTGATTTACTCTAGCATGTGTATA 58.308 33.333 0.00 0.00 0.00 1.47
293 298 9.186323 GTGTGATTTACTCTAGCATGTGTATAG 57.814 37.037 0.00 0.00 0.00 1.31
294 299 8.914011 TGTGATTTACTCTAGCATGTGTATAGT 58.086 33.333 0.00 0.00 0.00 2.12
295 300 9.751542 GTGATTTACTCTAGCATGTGTATAGTT 57.248 33.333 0.00 0.00 0.00 2.24
301 306 8.521170 ACTCTAGCATGTGTATAGTTAACTGA 57.479 34.615 18.56 3.16 0.00 3.41
302 307 8.967918 ACTCTAGCATGTGTATAGTTAACTGAA 58.032 33.333 18.56 3.03 0.00 3.02
303 308 9.973450 CTCTAGCATGTGTATAGTTAACTGAAT 57.027 33.333 18.56 7.22 0.00 2.57
307 312 8.184192 AGCATGTGTATAGTTAACTGAATTTGC 58.816 33.333 18.56 16.05 0.00 3.68
308 313 8.184192 GCATGTGTATAGTTAACTGAATTTGCT 58.816 33.333 18.56 0.00 0.00 3.91
309 314 9.708222 CATGTGTATAGTTAACTGAATTTGCTC 57.292 33.333 18.56 3.78 0.00 4.26
310 315 9.672673 ATGTGTATAGTTAACTGAATTTGCTCT 57.327 29.630 18.56 0.00 0.00 4.09
311 316 8.935844 TGTGTATAGTTAACTGAATTTGCTCTG 58.064 33.333 18.56 0.00 0.00 3.35
312 317 8.936864 GTGTATAGTTAACTGAATTTGCTCTGT 58.063 33.333 18.56 0.00 0.00 3.41
313 318 8.935844 TGTATAGTTAACTGAATTTGCTCTGTG 58.064 33.333 18.56 0.00 0.00 3.66
314 319 7.986085 ATAGTTAACTGAATTTGCTCTGTGT 57.014 32.000 18.56 0.00 0.00 3.72
315 320 6.064846 AGTTAACTGAATTTGCTCTGTGTG 57.935 37.500 7.48 0.00 0.00 3.82
316 321 5.822519 AGTTAACTGAATTTGCTCTGTGTGA 59.177 36.000 7.48 0.00 0.00 3.58
331 336 6.238897 GCTCTGTGTGATTACTCTAGCACTAT 60.239 42.308 10.51 0.00 33.84 2.12
357 873 2.762745 CCATTTGCTTTGCTTTGCTCT 58.237 42.857 0.00 0.00 0.00 4.09
412 928 7.503566 TCCTTGAAAATGAATAGGATGGATGTC 59.496 37.037 0.00 0.00 30.30 3.06
464 982 8.764524 AACTGAATTGTGACAATAGACTAGAC 57.235 34.615 11.70 0.00 0.00 2.59
516 1191 9.729023 AATGAAAATCACATTAAAATATCGCGA 57.271 25.926 13.09 13.09 36.40 5.87
525 1200 6.636850 ACATTAAAATATCGCGAAAATGCTCC 59.363 34.615 15.24 0.00 0.00 4.70
610 1285 9.554395 TGACAGAACACTTATAACTGAAATTGA 57.446 29.630 6.95 0.00 33.53 2.57
628 1303 7.225931 TGAAATTGACAGTACTTAACACTCCAC 59.774 37.037 0.00 0.00 0.00 4.02
636 1311 7.152645 CAGTACTTAACACTCCACTGTAATGT 58.847 38.462 0.00 0.00 31.06 2.71
648 1323 5.003160 CCACTGTAATGTTGATGGAACTGA 58.997 41.667 0.00 0.00 35.37 3.41
650 1325 4.690748 ACTGTAATGTTGATGGAACTGACG 59.309 41.667 0.00 0.00 35.37 4.35
679 1354 5.559417 GCAAATGTTCAGAAACTTGGCAATG 60.559 40.000 0.00 0.00 36.30 2.82
685 1360 1.615392 AGAAACTTGGCAATGCTCCAC 59.385 47.619 4.82 0.00 32.45 4.02
800 1476 7.639113 ACAGTTTAGAACCAGAAATTGTCAA 57.361 32.000 0.00 0.00 32.04 3.18
1654 2930 0.034059 CCCTCATCATAGCACGGACC 59.966 60.000 0.00 0.00 0.00 4.46
1707 2992 1.300620 CGTCCAGAAGCACGTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
1873 3164 2.654877 GGAAACAGGTCGGCGAGA 59.345 61.111 11.20 0.00 0.00 4.04
1904 3195 4.394712 CCACCCTGACACCCTCGC 62.395 72.222 0.00 0.00 0.00 5.03
2193 3490 3.749064 GCCGTCTCCAGTGAGCGA 61.749 66.667 0.00 0.00 39.13 4.93
2565 3876 1.322538 ATGGCTTGGAACCAATCGGC 61.323 55.000 6.74 9.11 41.49 5.54
2567 3878 1.531739 GGCTTGGAACCAATCGGCAA 61.532 55.000 14.83 0.00 35.20 4.52
2568 3879 0.532115 GCTTGGAACCAATCGGCAAT 59.468 50.000 6.74 0.00 35.20 3.56
2569 3880 1.469767 GCTTGGAACCAATCGGCAATC 60.470 52.381 6.74 0.00 35.20 2.67
2570 3881 0.808125 TTGGAACCAATCGGCAATCG 59.192 50.000 1.83 0.00 40.90 3.34
2572 3883 1.029947 GGAACCAATCGGCAATCGGT 61.030 55.000 0.00 0.00 39.77 4.69
2581 3902 0.643820 CGGCAATCGGTCGTAGTTTC 59.356 55.000 0.00 0.00 40.47 2.78
2692 4040 3.880047 ACAGATGCCATGTTTCCATTG 57.120 42.857 0.00 0.00 0.00 2.82
2715 4063 4.679373 AGCCGTCTAAATCATCATCAGT 57.321 40.909 0.00 0.00 0.00 3.41
2721 4069 7.095857 GCCGTCTAAATCATCATCAGTTAAGAG 60.096 40.741 0.00 0.00 0.00 2.85
2732 4080 9.729023 CATCATCAGTTAAGAGTAGTTCAGTAG 57.271 37.037 0.00 0.00 0.00 2.57
2734 4082 9.955102 TCATCAGTTAAGAGTAGTTCAGTAGTA 57.045 33.333 0.00 0.00 0.00 1.82
2735 4083 9.991388 CATCAGTTAAGAGTAGTTCAGTAGTAC 57.009 37.037 0.00 0.00 33.57 2.73
2764 4113 6.204882 TGCATCATCAGATCAATCATTGTCTC 59.795 38.462 0.00 0.00 30.20 3.36
2768 4117 8.379457 TCATCAGATCAATCATTGTCTCATTC 57.621 34.615 0.00 0.00 0.00 2.67
2780 4129 6.929049 TCATTGTCTCATTCGTTAGTTTGAGT 59.071 34.615 0.00 0.00 37.46 3.41
2781 4130 7.441157 TCATTGTCTCATTCGTTAGTTTGAGTT 59.559 33.333 0.00 0.00 37.46 3.01
2782 4131 7.548196 TTGTCTCATTCGTTAGTTTGAGTTT 57.452 32.000 0.00 0.00 37.46 2.66
2783 4132 8.651391 TTGTCTCATTCGTTAGTTTGAGTTTA 57.349 30.769 0.00 0.00 37.46 2.01
2784 4133 8.827177 TGTCTCATTCGTTAGTTTGAGTTTAT 57.173 30.769 0.00 0.00 37.46 1.40
2785 4134 8.922676 TGTCTCATTCGTTAGTTTGAGTTTATC 58.077 33.333 0.00 0.00 37.46 1.75
2786 4135 8.922676 GTCTCATTCGTTAGTTTGAGTTTATCA 58.077 33.333 0.00 0.00 37.46 2.15
2787 4136 8.922676 TCTCATTCGTTAGTTTGAGTTTATCAC 58.077 33.333 0.00 0.00 37.77 3.06
2788 4137 8.827177 TCATTCGTTAGTTTGAGTTTATCACT 57.173 30.769 0.00 0.00 37.77 3.41
2789 4138 9.268268 TCATTCGTTAGTTTGAGTTTATCACTT 57.732 29.630 0.00 0.00 37.77 3.16
2790 4139 9.318041 CATTCGTTAGTTTGAGTTTATCACTTG 57.682 33.333 0.00 0.00 37.77 3.16
2791 4140 8.428186 TTCGTTAGTTTGAGTTTATCACTTGT 57.572 30.769 0.00 0.00 37.77 3.16
2792 4141 8.428186 TCGTTAGTTTGAGTTTATCACTTGTT 57.572 30.769 0.00 0.00 37.77 2.83
2793 4142 8.332464 TCGTTAGTTTGAGTTTATCACTTGTTG 58.668 33.333 0.00 0.00 37.77 3.33
2794 4143 8.120465 CGTTAGTTTGAGTTTATCACTTGTTGT 58.880 33.333 0.00 0.00 37.77 3.32
2798 4147 9.561069 AGTTTGAGTTTATCACTTGTTGTATCT 57.439 29.630 0.00 0.00 37.77 1.98
2799 4148 9.813080 GTTTGAGTTTATCACTTGTTGTATCTC 57.187 33.333 0.00 0.00 37.77 2.75
2800 4149 9.778741 TTTGAGTTTATCACTTGTTGTATCTCT 57.221 29.630 0.00 0.00 37.77 3.10
2801 4150 9.778741 TTGAGTTTATCACTTGTTGTATCTCTT 57.221 29.630 0.00 0.00 37.77 2.85
2802 4151 9.778741 TGAGTTTATCACTTGTTGTATCTCTTT 57.221 29.630 0.00 0.00 35.01 2.52
2804 4153 9.561069 AGTTTATCACTTGTTGTATCTCTTTGT 57.439 29.630 0.00 0.00 27.32 2.83
2805 4154 9.813080 GTTTATCACTTGTTGTATCTCTTTGTC 57.187 33.333 0.00 0.00 0.00 3.18
2806 4155 9.778741 TTTATCACTTGTTGTATCTCTTTGTCT 57.221 29.630 0.00 0.00 0.00 3.41
2807 4156 7.897575 ATCACTTGTTGTATCTCTTTGTCTC 57.102 36.000 0.00 0.00 0.00 3.36
2808 4157 6.816136 TCACTTGTTGTATCTCTTTGTCTCA 58.184 36.000 0.00 0.00 0.00 3.27
2809 4158 7.445121 TCACTTGTTGTATCTCTTTGTCTCAT 58.555 34.615 0.00 0.00 0.00 2.90
2810 4159 7.600375 TCACTTGTTGTATCTCTTTGTCTCATC 59.400 37.037 0.00 0.00 0.00 2.92
2811 4160 7.386025 CACTTGTTGTATCTCTTTGTCTCATCA 59.614 37.037 0.00 0.00 0.00 3.07
2812 4161 7.933577 ACTTGTTGTATCTCTTTGTCTCATCAA 59.066 33.333 0.00 0.00 0.00 2.57
2813 4162 7.895975 TGTTGTATCTCTTTGTCTCATCAAG 57.104 36.000 0.00 0.00 0.00 3.02
2814 4163 7.670364 TGTTGTATCTCTTTGTCTCATCAAGA 58.330 34.615 0.00 0.00 0.00 3.02
2815 4164 7.816513 TGTTGTATCTCTTTGTCTCATCAAGAG 59.183 37.037 2.32 2.32 46.14 2.85
2816 4165 7.473735 TGTATCTCTTTGTCTCATCAAGAGT 57.526 36.000 7.78 0.35 44.98 3.24
2817 4166 7.542890 TGTATCTCTTTGTCTCATCAAGAGTC 58.457 38.462 7.78 0.00 44.98 3.36
2818 4167 6.602410 ATCTCTTTGTCTCATCAAGAGTCA 57.398 37.500 7.78 0.00 44.98 3.41
2819 4168 6.410942 TCTCTTTGTCTCATCAAGAGTCAA 57.589 37.500 7.78 0.00 46.03 3.18
2820 4169 6.219473 TCTCTTTGTCTCATCAAGAGTCAAC 58.781 40.000 7.78 0.00 46.87 3.18
2821 4170 4.984785 TCTTTGTCTCATCAAGAGTCAACG 59.015 41.667 4.69 4.05 46.87 4.10
2822 4171 4.322080 TTGTCTCATCAAGAGTCAACGT 57.678 40.909 0.00 0.00 43.97 3.99
2823 4172 5.447624 TTGTCTCATCAAGAGTCAACGTA 57.552 39.130 0.00 0.00 43.97 3.57
2824 4173 5.644977 TGTCTCATCAAGAGTCAACGTAT 57.355 39.130 0.00 0.00 44.98 3.06
2825 4174 5.402398 TGTCTCATCAAGAGTCAACGTATG 58.598 41.667 0.00 0.00 44.98 2.39
2826 4175 4.800993 GTCTCATCAAGAGTCAACGTATGG 59.199 45.833 0.00 0.00 44.98 2.74
2827 4176 4.115516 CTCATCAAGAGTCAACGTATGGG 58.884 47.826 0.00 0.00 39.62 4.00
2828 4177 3.513912 TCATCAAGAGTCAACGTATGGGT 59.486 43.478 0.00 0.00 0.00 4.51
2829 4178 3.313012 TCAAGAGTCAACGTATGGGTG 57.687 47.619 0.00 0.00 0.00 4.61
2830 4179 2.894765 TCAAGAGTCAACGTATGGGTGA 59.105 45.455 0.00 0.00 0.00 4.02
2831 4180 3.322541 TCAAGAGTCAACGTATGGGTGAA 59.677 43.478 0.00 0.00 0.00 3.18
2832 4181 4.062293 CAAGAGTCAACGTATGGGTGAAA 58.938 43.478 0.00 0.00 0.00 2.69
2833 4182 4.345859 AGAGTCAACGTATGGGTGAAAA 57.654 40.909 0.00 0.00 0.00 2.29
2834 4183 4.315803 AGAGTCAACGTATGGGTGAAAAG 58.684 43.478 0.00 0.00 0.00 2.27
2835 4184 4.039973 AGAGTCAACGTATGGGTGAAAAGA 59.960 41.667 0.00 0.00 0.00 2.52
2836 4185 4.315803 AGTCAACGTATGGGTGAAAAGAG 58.684 43.478 0.00 0.00 0.00 2.85
2837 4186 4.039973 AGTCAACGTATGGGTGAAAAGAGA 59.960 41.667 0.00 0.00 0.00 3.10
2838 4187 4.389077 GTCAACGTATGGGTGAAAAGAGAG 59.611 45.833 0.00 0.00 0.00 3.20
2839 4188 4.039973 TCAACGTATGGGTGAAAAGAGAGT 59.960 41.667 0.00 0.00 0.00 3.24
2840 4189 4.618920 ACGTATGGGTGAAAAGAGAGTT 57.381 40.909 0.00 0.00 0.00 3.01
2841 4190 4.969484 ACGTATGGGTGAAAAGAGAGTTT 58.031 39.130 0.00 0.00 0.00 2.66
2842 4191 6.105397 ACGTATGGGTGAAAAGAGAGTTTA 57.895 37.500 0.00 0.00 0.00 2.01
2843 4192 6.708285 ACGTATGGGTGAAAAGAGAGTTTAT 58.292 36.000 0.00 0.00 0.00 1.40
2844 4193 7.166167 ACGTATGGGTGAAAAGAGAGTTTATT 58.834 34.615 0.00 0.00 0.00 1.40
2845 4194 7.333672 ACGTATGGGTGAAAAGAGAGTTTATTC 59.666 37.037 0.00 0.00 0.00 1.75
2846 4195 7.201617 CGTATGGGTGAAAAGAGAGTTTATTCC 60.202 40.741 0.00 0.00 0.00 3.01
2847 4196 6.200878 TGGGTGAAAAGAGAGTTTATTCCT 57.799 37.500 0.00 0.00 0.00 3.36
2848 4197 6.610830 TGGGTGAAAAGAGAGTTTATTCCTT 58.389 36.000 0.00 0.00 0.00 3.36
2849 4198 7.066781 TGGGTGAAAAGAGAGTTTATTCCTTT 58.933 34.615 0.00 0.00 0.00 3.11
2850 4199 7.014230 TGGGTGAAAAGAGAGTTTATTCCTTTG 59.986 37.037 0.00 0.00 0.00 2.77
2851 4200 7.230712 GGGTGAAAAGAGAGTTTATTCCTTTGA 59.769 37.037 0.00 0.00 0.00 2.69
2852 4201 8.630037 GGTGAAAAGAGAGTTTATTCCTTTGAA 58.370 33.333 0.00 0.00 34.33 2.69
2861 4210 9.626045 AGAGTTTATTCCTTTGAAAATTAAGCG 57.374 29.630 0.00 0.00 33.32 4.68
2862 4211 9.620660 GAGTTTATTCCTTTGAAAATTAAGCGA 57.379 29.630 0.00 0.00 33.32 4.93
2863 4212 9.626045 AGTTTATTCCTTTGAAAATTAAGCGAG 57.374 29.630 0.00 0.00 33.32 5.03
2864 4213 9.620660 GTTTATTCCTTTGAAAATTAAGCGAGA 57.379 29.630 0.00 0.00 33.32 4.04
2865 4214 9.840427 TTTATTCCTTTGAAAATTAAGCGAGAG 57.160 29.630 0.00 0.00 33.32 3.20
2866 4215 6.325596 ATTCCTTTGAAAATTAAGCGAGAGC 58.674 36.000 0.00 0.00 46.21 4.09
2879 4228 2.715737 CGAGAGCAGAATAGGGTAGC 57.284 55.000 0.00 0.00 0.00 3.58
2880 4229 1.957177 CGAGAGCAGAATAGGGTAGCA 59.043 52.381 0.00 0.00 0.00 3.49
2881 4230 2.030363 CGAGAGCAGAATAGGGTAGCAG 60.030 54.545 0.00 0.00 0.00 4.24
2882 4231 3.226777 GAGAGCAGAATAGGGTAGCAGA 58.773 50.000 0.00 0.00 0.00 4.26
2883 4232 3.831911 GAGAGCAGAATAGGGTAGCAGAT 59.168 47.826 0.00 0.00 0.00 2.90
2884 4233 3.831911 AGAGCAGAATAGGGTAGCAGATC 59.168 47.826 0.00 0.00 0.00 2.75
2885 4234 2.560542 AGCAGAATAGGGTAGCAGATCG 59.439 50.000 0.00 0.00 0.00 3.69
2886 4235 2.297597 GCAGAATAGGGTAGCAGATCGT 59.702 50.000 0.00 0.00 0.00 3.73
2887 4236 3.243907 GCAGAATAGGGTAGCAGATCGTT 60.244 47.826 0.00 0.00 0.00 3.85
2888 4237 4.740934 GCAGAATAGGGTAGCAGATCGTTT 60.741 45.833 0.00 0.00 0.00 3.60
2889 4238 4.747108 CAGAATAGGGTAGCAGATCGTTTG 59.253 45.833 0.00 0.00 0.00 2.93
2890 4239 3.753294 ATAGGGTAGCAGATCGTTTGG 57.247 47.619 0.00 0.00 0.00 3.28
2891 4240 0.107654 AGGGTAGCAGATCGTTTGGC 60.108 55.000 0.00 0.00 0.00 4.52
2892 4241 0.107654 GGGTAGCAGATCGTTTGGCT 60.108 55.000 0.00 0.00 40.26 4.75
2893 4242 1.138266 GGGTAGCAGATCGTTTGGCTA 59.862 52.381 0.00 0.00 37.79 3.93
2894 4243 2.224305 GGGTAGCAGATCGTTTGGCTAT 60.224 50.000 0.00 0.00 40.57 2.97
2895 4244 2.802816 GGTAGCAGATCGTTTGGCTATG 59.197 50.000 0.00 0.00 40.57 2.23
2896 4245 2.698855 AGCAGATCGTTTGGCTATGT 57.301 45.000 0.00 0.00 34.25 2.29
2897 4246 3.819564 AGCAGATCGTTTGGCTATGTA 57.180 42.857 0.00 0.00 34.25 2.29
2898 4247 4.342862 AGCAGATCGTTTGGCTATGTAT 57.657 40.909 0.00 0.00 34.25 2.29
2899 4248 5.468540 AGCAGATCGTTTGGCTATGTATA 57.531 39.130 0.00 0.00 34.25 1.47
2900 4249 5.473931 AGCAGATCGTTTGGCTATGTATAG 58.526 41.667 0.00 0.00 34.25 1.31
2901 4250 5.011125 AGCAGATCGTTTGGCTATGTATAGT 59.989 40.000 1.28 0.00 34.25 2.12
2902 4251 5.346281 GCAGATCGTTTGGCTATGTATAGTC 59.654 44.000 0.00 0.00 35.60 2.59
2903 4252 5.569441 CAGATCGTTTGGCTATGTATAGTCG 59.431 44.000 0.00 0.00 37.80 4.18
2904 4253 4.906065 TCGTTTGGCTATGTATAGTCGT 57.094 40.909 0.00 0.00 37.80 4.34
2905 4254 6.429078 AGATCGTTTGGCTATGTATAGTCGTA 59.571 38.462 0.00 0.00 37.80 3.43
2906 4255 5.751680 TCGTTTGGCTATGTATAGTCGTAC 58.248 41.667 0.00 0.11 37.80 3.67
2907 4256 5.296531 TCGTTTGGCTATGTATAGTCGTACA 59.703 40.000 0.00 0.00 37.80 2.90
2908 4257 5.624081 CGTTTGGCTATGTATAGTCGTACAG 59.376 44.000 0.00 0.00 37.80 2.74
2909 4258 6.512253 CGTTTGGCTATGTATAGTCGTACAGA 60.512 42.308 0.00 0.00 37.80 3.41
2910 4259 6.555812 TTGGCTATGTATAGTCGTACAGAG 57.444 41.667 4.76 4.76 43.37 3.35
2911 4260 5.861727 TGGCTATGTATAGTCGTACAGAGA 58.138 41.667 11.56 0.00 43.26 3.10
2912 4261 5.932883 TGGCTATGTATAGTCGTACAGAGAG 59.067 44.000 11.56 2.40 43.26 3.20
2913 4262 5.933463 GGCTATGTATAGTCGTACAGAGAGT 59.067 44.000 11.56 0.00 43.26 3.24
2914 4263 7.095910 GGCTATGTATAGTCGTACAGAGAGTA 58.904 42.308 11.56 0.00 43.26 2.59
2915 4264 7.063308 GGCTATGTATAGTCGTACAGAGAGTAC 59.937 44.444 11.56 0.00 43.26 2.73
2916 4265 7.814107 GCTATGTATAGTCGTACAGAGAGTACT 59.186 40.741 11.56 0.00 43.26 2.73
2933 4282 9.509956 AGAGAGTACTACTGCTATATAACTTGG 57.490 37.037 0.00 0.00 0.00 3.61
2934 4283 8.638629 AGAGTACTACTGCTATATAACTTGGG 57.361 38.462 0.00 0.00 0.00 4.12
2935 4284 7.177041 AGAGTACTACTGCTATATAACTTGGGC 59.823 40.741 0.00 0.00 0.00 5.36
2936 4285 7.011382 AGTACTACTGCTATATAACTTGGGCT 58.989 38.462 0.00 0.00 0.00 5.19
2937 4286 8.168725 AGTACTACTGCTATATAACTTGGGCTA 58.831 37.037 0.00 0.00 0.00 3.93
2938 4287 7.469537 ACTACTGCTATATAACTTGGGCTAG 57.530 40.000 0.00 0.00 0.00 3.42
2939 4288 5.746990 ACTGCTATATAACTTGGGCTAGG 57.253 43.478 0.00 0.00 0.00 3.02
2940 4289 5.155905 ACTGCTATATAACTTGGGCTAGGT 58.844 41.667 0.00 0.00 0.00 3.08
2941 4290 5.246429 ACTGCTATATAACTTGGGCTAGGTC 59.754 44.000 0.00 0.00 0.00 3.85
2942 4291 5.152193 TGCTATATAACTTGGGCTAGGTCA 58.848 41.667 0.00 0.00 0.00 4.02
2943 4292 5.785423 TGCTATATAACTTGGGCTAGGTCAT 59.215 40.000 0.00 0.00 0.00 3.06
2944 4293 6.070767 TGCTATATAACTTGGGCTAGGTCATC 60.071 42.308 0.00 0.00 0.00 2.92
2945 4294 5.763876 ATATAACTTGGGCTAGGTCATCC 57.236 43.478 0.00 0.00 0.00 3.51
2946 4295 0.541863 AACTTGGGCTAGGTCATCCG 59.458 55.000 0.00 0.00 39.05 4.18
2947 4296 0.617820 ACTTGGGCTAGGTCATCCGT 60.618 55.000 0.00 0.00 39.05 4.69
2948 4297 0.179073 CTTGGGCTAGGTCATCCGTG 60.179 60.000 0.00 0.00 39.05 4.94
2949 4298 0.907704 TTGGGCTAGGTCATCCGTGT 60.908 55.000 0.00 0.00 39.05 4.49
2950 4299 0.032912 TGGGCTAGGTCATCCGTGTA 60.033 55.000 0.00 0.00 39.05 2.90
2951 4300 1.339097 GGGCTAGGTCATCCGTGTAT 58.661 55.000 0.00 0.00 39.05 2.29
2952 4301 1.692519 GGGCTAGGTCATCCGTGTATT 59.307 52.381 0.00 0.00 39.05 1.89
2953 4302 2.548067 GGGCTAGGTCATCCGTGTATTG 60.548 54.545 0.00 0.00 39.05 1.90
2954 4303 2.364324 GGCTAGGTCATCCGTGTATTGA 59.636 50.000 0.00 0.00 39.05 2.57
2955 4304 3.553096 GGCTAGGTCATCCGTGTATTGAG 60.553 52.174 0.00 0.00 39.05 3.02
2956 4305 3.553096 GCTAGGTCATCCGTGTATTGAGG 60.553 52.174 0.00 0.00 39.05 3.86
2957 4306 2.747177 AGGTCATCCGTGTATTGAGGA 58.253 47.619 0.00 0.00 39.05 3.71
2958 4307 3.104512 AGGTCATCCGTGTATTGAGGAA 58.895 45.455 0.00 0.00 37.62 3.36
2959 4308 3.118738 AGGTCATCCGTGTATTGAGGAAC 60.119 47.826 0.00 0.00 37.62 3.62
2960 4309 5.362068 AGGTCATCCGTGTATTGAGGAACT 61.362 45.833 0.00 0.00 34.73 3.01
2961 4310 4.504858 GTCATCCGTGTATTGAGGAACTT 58.495 43.478 0.00 0.00 41.55 2.66
2962 4311 4.567159 GTCATCCGTGTATTGAGGAACTTC 59.433 45.833 0.00 0.00 41.55 3.01
2963 4312 4.466370 TCATCCGTGTATTGAGGAACTTCT 59.534 41.667 0.00 0.00 41.55 2.85
2964 4313 5.655090 TCATCCGTGTATTGAGGAACTTCTA 59.345 40.000 0.00 0.00 41.55 2.10
2965 4314 5.320549 TCCGTGTATTGAGGAACTTCTAC 57.679 43.478 0.00 0.00 41.55 2.59
2966 4315 4.159135 TCCGTGTATTGAGGAACTTCTACC 59.841 45.833 0.00 0.00 41.55 3.18
2967 4316 4.159879 CCGTGTATTGAGGAACTTCTACCT 59.840 45.833 0.00 0.00 41.55 3.08
2975 4324 4.927422 GAGGAACTTCTACCTCTCGATTG 58.073 47.826 0.00 0.00 46.28 2.67
2976 4325 4.345854 AGGAACTTCTACCTCTCGATTGT 58.654 43.478 0.00 0.00 27.25 2.71
2977 4326 5.507637 AGGAACTTCTACCTCTCGATTGTA 58.492 41.667 0.00 0.00 27.25 2.41
2978 4327 5.950549 AGGAACTTCTACCTCTCGATTGTAA 59.049 40.000 0.00 0.00 27.25 2.41
2979 4328 6.035217 GGAACTTCTACCTCTCGATTGTAAC 58.965 44.000 0.00 0.00 0.00 2.50
2980 4329 5.579564 ACTTCTACCTCTCGATTGTAACC 57.420 43.478 0.00 0.00 0.00 2.85
2984 4333 1.749634 ACCTCTCGATTGTAACCCTCG 59.250 52.381 0.00 0.00 0.00 4.63
3028 4378 7.595819 AAATCTGGTCAAACTATGGTCAAAA 57.404 32.000 0.00 0.00 0.00 2.44
3309 4724 8.707839 ACATTTGTTAGGAAAACAATAAATGCG 58.292 29.630 13.16 0.00 42.35 4.73
3413 4829 5.803020 AAGTTAGACGATTTGGAATGAGC 57.197 39.130 0.00 0.00 0.00 4.26
3424 4840 2.107366 TGGAATGAGCGATCCACACTA 58.893 47.619 0.00 0.00 40.74 2.74
3435 4851 5.651139 AGCGATCCACACTAGAGTAGTTAAA 59.349 40.000 0.00 0.00 36.76 1.52
3460 4880 7.698163 AGGGGTGATTAGAGACTAAATCATT 57.302 36.000 13.18 2.12 42.39 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 6.978080 TGACAACTTTGCATAAAGAGGAAAAC 59.022 34.615 5.15 0.00 44.87 2.43
81 82 7.532571 TGATCATGACAACTTTGCATAAAGAG 58.467 34.615 0.00 0.56 44.87 2.85
95 96 9.850198 TTCCAGTATTGATAATGATCATGACAA 57.150 29.630 9.46 15.13 41.77 3.18
130 131 5.368230 AGTTCTCTCCTTTTCTTCTTCAGGT 59.632 40.000 0.00 0.00 0.00 4.00
162 163 6.455360 AAGCTTGTCTTGACTGAATTTGAA 57.545 33.333 0.00 0.00 32.79 2.69
176 177 4.840271 TGATCATGATCACAAGCTTGTCT 58.160 39.130 30.27 18.89 42.42 3.41
205 210 8.585471 TCTTCAGGATTTTCTTCTTGCATTAT 57.415 30.769 0.00 0.00 0.00 1.28
241 246 3.518003 GCAAATGCGGGAGATGCT 58.482 55.556 2.73 0.00 34.29 3.79
267 272 9.186323 CTATACACATGCTAGAGTAAATCACAC 57.814 37.037 0.00 0.00 0.00 3.82
275 280 9.623000 TCAGTTAACTATACACATGCTAGAGTA 57.377 33.333 8.04 0.00 0.00 2.59
276 281 8.521170 TCAGTTAACTATACACATGCTAGAGT 57.479 34.615 8.04 0.00 0.00 3.24
277 282 9.973450 ATTCAGTTAACTATACACATGCTAGAG 57.027 33.333 8.04 0.00 0.00 2.43
281 286 8.184192 GCAAATTCAGTTAACTATACACATGCT 58.816 33.333 8.04 0.00 0.00 3.79
282 287 8.184192 AGCAAATTCAGTTAACTATACACATGC 58.816 33.333 8.04 12.50 0.00 4.06
283 288 9.708222 GAGCAAATTCAGTTAACTATACACATG 57.292 33.333 8.04 3.63 0.00 3.21
284 289 9.672673 AGAGCAAATTCAGTTAACTATACACAT 57.327 29.630 8.04 0.00 0.00 3.21
285 290 8.935844 CAGAGCAAATTCAGTTAACTATACACA 58.064 33.333 8.04 0.00 0.00 3.72
286 291 8.936864 ACAGAGCAAATTCAGTTAACTATACAC 58.063 33.333 8.04 0.00 0.00 2.90
287 292 8.935844 CACAGAGCAAATTCAGTTAACTATACA 58.064 33.333 8.04 0.00 0.00 2.29
288 293 8.936864 ACACAGAGCAAATTCAGTTAACTATAC 58.063 33.333 8.04 0.00 0.00 1.47
289 294 8.935844 CACACAGAGCAAATTCAGTTAACTATA 58.064 33.333 8.04 0.00 0.00 1.31
290 295 7.661437 TCACACAGAGCAAATTCAGTTAACTAT 59.339 33.333 8.04 0.00 0.00 2.12
291 296 6.989759 TCACACAGAGCAAATTCAGTTAACTA 59.010 34.615 8.04 0.00 0.00 2.24
292 297 5.822519 TCACACAGAGCAAATTCAGTTAACT 59.177 36.000 1.12 1.12 0.00 2.24
293 298 6.060028 TCACACAGAGCAAATTCAGTTAAC 57.940 37.500 0.00 0.00 0.00 2.01
294 299 6.882610 ATCACACAGAGCAAATTCAGTTAA 57.117 33.333 0.00 0.00 0.00 2.01
295 300 6.882610 AATCACACAGAGCAAATTCAGTTA 57.117 33.333 0.00 0.00 0.00 2.24
296 301 5.779529 AATCACACAGAGCAAATTCAGTT 57.220 34.783 0.00 0.00 0.00 3.16
297 302 6.000219 AGTAATCACACAGAGCAAATTCAGT 59.000 36.000 0.00 0.00 0.00 3.41
298 303 6.370994 AGAGTAATCACACAGAGCAAATTCAG 59.629 38.462 0.00 0.00 0.00 3.02
299 304 6.233434 AGAGTAATCACACAGAGCAAATTCA 58.767 36.000 0.00 0.00 0.00 2.57
300 305 6.734104 AGAGTAATCACACAGAGCAAATTC 57.266 37.500 0.00 0.00 0.00 2.17
301 306 6.314896 GCTAGAGTAATCACACAGAGCAAATT 59.685 38.462 0.00 0.00 31.35 1.82
302 307 5.814705 GCTAGAGTAATCACACAGAGCAAAT 59.185 40.000 0.00 0.00 31.35 2.32
303 308 5.171476 GCTAGAGTAATCACACAGAGCAAA 58.829 41.667 0.00 0.00 31.35 3.68
304 309 4.220602 TGCTAGAGTAATCACACAGAGCAA 59.779 41.667 0.00 0.00 35.27 3.91
305 310 3.763897 TGCTAGAGTAATCACACAGAGCA 59.236 43.478 0.00 0.00 35.58 4.26
306 311 4.109050 GTGCTAGAGTAATCACACAGAGC 58.891 47.826 0.00 0.00 31.52 4.09
307 312 5.574891 AGTGCTAGAGTAATCACACAGAG 57.425 43.478 11.74 0.00 32.25 3.35
308 313 7.416777 CCAATAGTGCTAGAGTAATCACACAGA 60.417 40.741 11.74 2.57 32.25 3.41
309 314 6.699204 CCAATAGTGCTAGAGTAATCACACAG 59.301 42.308 11.74 0.00 32.25 3.66
310 315 6.379988 TCCAATAGTGCTAGAGTAATCACACA 59.620 38.462 11.74 0.00 32.25 3.72
311 316 6.806751 TCCAATAGTGCTAGAGTAATCACAC 58.193 40.000 0.00 0.00 32.25 3.82
312 317 6.461648 GCTCCAATAGTGCTAGAGTAATCACA 60.462 42.308 0.00 0.00 32.10 3.58
313 318 5.923684 GCTCCAATAGTGCTAGAGTAATCAC 59.076 44.000 0.00 0.00 32.10 3.06
314 319 5.011125 GGCTCCAATAGTGCTAGAGTAATCA 59.989 44.000 0.00 0.00 35.28 2.57
315 320 5.011125 TGGCTCCAATAGTGCTAGAGTAATC 59.989 44.000 0.00 0.00 35.28 1.75
316 321 4.901849 TGGCTCCAATAGTGCTAGAGTAAT 59.098 41.667 0.00 0.00 35.28 1.89
357 873 5.639082 CACACATGCTAGAGTAAATCACACA 59.361 40.000 0.00 0.00 0.00 3.72
438 954 9.209175 GTCTAGTCTATTGTCACAATTCAGTTT 57.791 33.333 8.69 0.00 0.00 2.66
443 959 7.324178 ACCTGTCTAGTCTATTGTCACAATTC 58.676 38.462 8.69 0.44 0.00 2.17
448 964 7.120873 TCAGTTACCTGTCTAGTCTATTGTCAC 59.879 40.741 0.00 0.00 39.82 3.67
498 1173 7.192913 AGCATTTTCGCGATATTTTAATGTGA 58.807 30.769 10.88 0.00 36.85 3.58
525 1200 5.046529 GTGGAGTATTCTCACACTGCTATG 58.953 45.833 1.51 0.00 42.05 2.23
586 1261 9.337396 TGTCAATTTCAGTTATAAGTGTTCTGT 57.663 29.630 17.79 1.64 0.00 3.41
628 1303 4.093408 CCGTCAGTTCCATCAACATTACAG 59.907 45.833 0.00 0.00 37.48 2.74
636 1311 1.670674 GCGTACCGTCAGTTCCATCAA 60.671 52.381 0.00 0.00 0.00 2.57
648 1323 2.157834 TCTGAACATTTGCGTACCGT 57.842 45.000 0.00 0.00 0.00 4.83
650 1325 4.483476 AGTTTCTGAACATTTGCGTACC 57.517 40.909 0.00 0.00 38.26 3.34
655 1330 3.456280 TGCCAAGTTTCTGAACATTTGC 58.544 40.909 0.00 0.00 38.26 3.68
670 1345 0.524862 GTCAGTGGAGCATTGCCAAG 59.475 55.000 4.70 0.00 37.12 3.61
679 1354 3.753272 ACATTTGTGTATGTCAGTGGAGC 59.247 43.478 0.00 0.00 33.58 4.70
685 1360 9.655769 GCATTATAGAACATTTGTGTATGTCAG 57.344 33.333 0.00 0.00 37.76 3.51
800 1476 1.535462 CGCCCTCGTTCTTTCAAACAT 59.465 47.619 0.00 0.00 0.00 2.71
952 1644 7.973388 GGAAATCTGTATGATCGATCTTCTAGG 59.027 40.741 25.02 11.49 33.57 3.02
1707 2992 2.026905 GCGAGGAAGAGGAGGACATCT 61.027 57.143 0.00 0.00 38.88 2.90
1873 3164 4.643387 GTGGCCGCTGGGTTCAGT 62.643 66.667 9.68 0.00 42.78 3.41
1904 3195 2.629656 CCTTCCTGGCGTGCCTTTG 61.630 63.158 12.84 2.57 36.94 2.77
2193 3490 1.805120 CGAGGACGAACACCACTGTTT 60.805 52.381 0.00 0.00 40.93 2.83
2565 3876 4.103357 CCTACAGAAACTACGACCGATTG 58.897 47.826 0.00 0.00 0.00 2.67
2567 3878 3.614092 TCCTACAGAAACTACGACCGAT 58.386 45.455 0.00 0.00 0.00 4.18
2568 3879 3.005554 CTCCTACAGAAACTACGACCGA 58.994 50.000 0.00 0.00 0.00 4.69
2569 3880 2.477525 GCTCCTACAGAAACTACGACCG 60.478 54.545 0.00 0.00 0.00 4.79
2570 3881 2.754002 AGCTCCTACAGAAACTACGACC 59.246 50.000 0.00 0.00 0.00 4.79
2572 3883 4.841422 ACTAGCTCCTACAGAAACTACGA 58.159 43.478 0.00 0.00 0.00 3.43
2687 4035 5.056480 TGATGATTTAGACGGCTACAATGG 58.944 41.667 0.00 0.00 0.00 3.16
2689 4037 6.524734 TGATGATGATTTAGACGGCTACAAT 58.475 36.000 0.00 1.16 0.00 2.71
2692 4040 5.533482 ACTGATGATGATTTAGACGGCTAC 58.467 41.667 0.00 0.00 0.00 3.58
2715 4063 8.607459 GCATACGTACTACTGAACTACTCTTAA 58.393 37.037 0.00 0.00 0.00 1.85
2721 4069 6.722301 TGATGCATACGTACTACTGAACTAC 58.278 40.000 0.00 0.00 0.00 2.73
2732 4080 6.587608 TGATTGATCTGATGATGCATACGTAC 59.412 38.462 0.00 0.00 32.19 3.67
2734 4082 5.544650 TGATTGATCTGATGATGCATACGT 58.455 37.500 0.00 0.00 32.19 3.57
2735 4083 6.663944 ATGATTGATCTGATGATGCATACG 57.336 37.500 0.00 0.00 32.19 3.06
2764 4113 9.318041 CAAGTGATAAACTCAAACTAACGAATG 57.682 33.333 0.00 0.00 38.56 2.67
2768 4117 8.120465 ACAACAAGTGATAAACTCAAACTAACG 58.880 33.333 0.00 0.00 38.56 3.18
2780 4129 9.778741 AGACAAAGAGATACAACAAGTGATAAA 57.221 29.630 0.00 0.00 0.00 1.40
2781 4130 9.424319 GAGACAAAGAGATACAACAAGTGATAA 57.576 33.333 0.00 0.00 0.00 1.75
2782 4131 8.585018 TGAGACAAAGAGATACAACAAGTGATA 58.415 33.333 0.00 0.00 0.00 2.15
2783 4132 7.445121 TGAGACAAAGAGATACAACAAGTGAT 58.555 34.615 0.00 0.00 0.00 3.06
2784 4133 6.816136 TGAGACAAAGAGATACAACAAGTGA 58.184 36.000 0.00 0.00 0.00 3.41
2785 4134 7.386025 TGATGAGACAAAGAGATACAACAAGTG 59.614 37.037 0.00 0.00 0.00 3.16
2786 4135 7.445121 TGATGAGACAAAGAGATACAACAAGT 58.555 34.615 0.00 0.00 0.00 3.16
2787 4136 7.895975 TGATGAGACAAAGAGATACAACAAG 57.104 36.000 0.00 0.00 0.00 3.16
2788 4137 8.150296 TCTTGATGAGACAAAGAGATACAACAA 58.850 33.333 0.00 0.00 0.00 2.83
2789 4138 7.670364 TCTTGATGAGACAAAGAGATACAACA 58.330 34.615 0.00 0.00 0.00 3.33
2790 4139 7.816995 ACTCTTGATGAGACAAAGAGATACAAC 59.183 37.037 16.32 0.00 45.39 3.32
2791 4140 7.901029 ACTCTTGATGAGACAAAGAGATACAA 58.099 34.615 16.32 0.00 45.39 2.41
2792 4141 7.177392 TGACTCTTGATGAGACAAAGAGATACA 59.823 37.037 16.32 10.78 45.39 2.29
2793 4142 7.542890 TGACTCTTGATGAGACAAAGAGATAC 58.457 38.462 16.32 8.92 45.39 2.24
2794 4143 7.709149 TGACTCTTGATGAGACAAAGAGATA 57.291 36.000 16.32 4.31 45.39 1.98
2795 4144 6.602410 TGACTCTTGATGAGACAAAGAGAT 57.398 37.500 16.32 3.44 45.39 2.75
2802 4151 5.402398 CATACGTTGACTCTTGATGAGACA 58.598 41.667 0.00 0.00 45.39 3.41
2803 4152 4.800993 CCATACGTTGACTCTTGATGAGAC 59.199 45.833 0.00 0.00 45.39 3.36
2804 4153 4.142160 CCCATACGTTGACTCTTGATGAGA 60.142 45.833 0.00 0.00 45.39 3.27
2806 4155 3.513912 ACCCATACGTTGACTCTTGATGA 59.486 43.478 0.00 0.00 0.00 2.92
2807 4156 3.618594 CACCCATACGTTGACTCTTGATG 59.381 47.826 0.00 0.00 0.00 3.07
2808 4157 3.513912 TCACCCATACGTTGACTCTTGAT 59.486 43.478 0.00 0.00 0.00 2.57
2809 4158 2.894765 TCACCCATACGTTGACTCTTGA 59.105 45.455 0.00 0.00 0.00 3.02
2810 4159 3.313012 TCACCCATACGTTGACTCTTG 57.687 47.619 0.00 0.00 0.00 3.02
2811 4160 4.345859 TTTCACCCATACGTTGACTCTT 57.654 40.909 0.00 0.00 0.00 2.85
2812 4161 4.039973 TCTTTTCACCCATACGTTGACTCT 59.960 41.667 0.00 0.00 0.00 3.24
2813 4162 4.312443 TCTTTTCACCCATACGTTGACTC 58.688 43.478 0.00 0.00 0.00 3.36
2814 4163 4.039973 TCTCTTTTCACCCATACGTTGACT 59.960 41.667 0.00 0.00 0.00 3.41
2815 4164 4.312443 TCTCTTTTCACCCATACGTTGAC 58.688 43.478 0.00 0.00 0.00 3.18
2816 4165 4.039973 ACTCTCTTTTCACCCATACGTTGA 59.960 41.667 0.00 0.00 0.00 3.18
2817 4166 4.315803 ACTCTCTTTTCACCCATACGTTG 58.684 43.478 0.00 0.00 0.00 4.10
2818 4167 4.618920 ACTCTCTTTTCACCCATACGTT 57.381 40.909 0.00 0.00 0.00 3.99
2819 4168 4.618920 AACTCTCTTTTCACCCATACGT 57.381 40.909 0.00 0.00 0.00 3.57
2820 4169 7.201617 GGAATAAACTCTCTTTTCACCCATACG 60.202 40.741 0.00 0.00 0.00 3.06
2821 4170 7.829706 AGGAATAAACTCTCTTTTCACCCATAC 59.170 37.037 0.00 0.00 0.00 2.39
2822 4171 7.928873 AGGAATAAACTCTCTTTTCACCCATA 58.071 34.615 0.00 0.00 0.00 2.74
2823 4172 6.794534 AGGAATAAACTCTCTTTTCACCCAT 58.205 36.000 0.00 0.00 0.00 4.00
2824 4173 6.200878 AGGAATAAACTCTCTTTTCACCCA 57.799 37.500 0.00 0.00 0.00 4.51
2825 4174 7.230712 TCAAAGGAATAAACTCTCTTTTCACCC 59.769 37.037 0.00 0.00 0.00 4.61
2826 4175 8.166422 TCAAAGGAATAAACTCTCTTTTCACC 57.834 34.615 0.00 0.00 0.00 4.02
2835 4184 9.626045 CGCTTAATTTTCAAAGGAATAAACTCT 57.374 29.630 0.00 0.00 31.93 3.24
2836 4185 9.620660 TCGCTTAATTTTCAAAGGAATAAACTC 57.379 29.630 0.00 0.00 31.93 3.01
2837 4186 9.626045 CTCGCTTAATTTTCAAAGGAATAAACT 57.374 29.630 0.00 0.00 31.93 2.66
2838 4187 9.620660 TCTCGCTTAATTTTCAAAGGAATAAAC 57.379 29.630 0.00 0.00 31.93 2.01
2839 4188 9.840427 CTCTCGCTTAATTTTCAAAGGAATAAA 57.160 29.630 0.00 0.00 31.93 1.40
2840 4189 7.968405 GCTCTCGCTTAATTTTCAAAGGAATAA 59.032 33.333 0.00 0.00 31.93 1.40
2841 4190 7.120579 TGCTCTCGCTTAATTTTCAAAGGAATA 59.879 33.333 0.00 0.00 36.97 1.75
2842 4191 6.071952 TGCTCTCGCTTAATTTTCAAAGGAAT 60.072 34.615 0.00 0.00 36.97 3.01
2843 4192 5.240623 TGCTCTCGCTTAATTTTCAAAGGAA 59.759 36.000 0.00 0.00 36.97 3.36
2844 4193 4.759693 TGCTCTCGCTTAATTTTCAAAGGA 59.240 37.500 0.00 0.00 36.97 3.36
2845 4194 5.046910 TGCTCTCGCTTAATTTTCAAAGG 57.953 39.130 0.00 0.00 36.97 3.11
2846 4195 5.931532 TCTGCTCTCGCTTAATTTTCAAAG 58.068 37.500 0.00 0.00 36.97 2.77
2847 4196 5.940192 TCTGCTCTCGCTTAATTTTCAAA 57.060 34.783 0.00 0.00 36.97 2.69
2848 4197 5.940192 TTCTGCTCTCGCTTAATTTTCAA 57.060 34.783 0.00 0.00 36.97 2.69
2849 4198 6.258727 CCTATTCTGCTCTCGCTTAATTTTCA 59.741 38.462 0.00 0.00 36.97 2.69
2850 4199 6.293135 CCCTATTCTGCTCTCGCTTAATTTTC 60.293 42.308 0.00 0.00 36.97 2.29
2851 4200 5.529060 CCCTATTCTGCTCTCGCTTAATTTT 59.471 40.000 0.00 0.00 36.97 1.82
2852 4201 5.059833 CCCTATTCTGCTCTCGCTTAATTT 58.940 41.667 0.00 0.00 36.97 1.82
2853 4202 4.101741 ACCCTATTCTGCTCTCGCTTAATT 59.898 41.667 0.00 0.00 36.97 1.40
2854 4203 3.643792 ACCCTATTCTGCTCTCGCTTAAT 59.356 43.478 0.00 0.00 36.97 1.40
2855 4204 3.031736 ACCCTATTCTGCTCTCGCTTAA 58.968 45.455 0.00 0.00 36.97 1.85
2856 4205 2.667470 ACCCTATTCTGCTCTCGCTTA 58.333 47.619 0.00 0.00 36.97 3.09
2857 4206 1.490574 ACCCTATTCTGCTCTCGCTT 58.509 50.000 0.00 0.00 36.97 4.68
2858 4207 2.235016 CTACCCTATTCTGCTCTCGCT 58.765 52.381 0.00 0.00 36.97 4.93
2859 4208 1.336424 GCTACCCTATTCTGCTCTCGC 60.336 57.143 0.00 0.00 0.00 5.03
2860 4209 1.957177 TGCTACCCTATTCTGCTCTCG 59.043 52.381 0.00 0.00 0.00 4.04
2861 4210 3.226777 TCTGCTACCCTATTCTGCTCTC 58.773 50.000 0.00 0.00 0.00 3.20
2862 4211 3.320610 TCTGCTACCCTATTCTGCTCT 57.679 47.619 0.00 0.00 0.00 4.09
2863 4212 3.366883 CGATCTGCTACCCTATTCTGCTC 60.367 52.174 0.00 0.00 0.00 4.26
2864 4213 2.560542 CGATCTGCTACCCTATTCTGCT 59.439 50.000 0.00 0.00 0.00 4.24
2865 4214 2.297597 ACGATCTGCTACCCTATTCTGC 59.702 50.000 0.00 0.00 0.00 4.26
2866 4215 4.592485 AACGATCTGCTACCCTATTCTG 57.408 45.455 0.00 0.00 0.00 3.02
2867 4216 4.202264 CCAAACGATCTGCTACCCTATTCT 60.202 45.833 0.00 0.00 0.00 2.40
2868 4217 4.058817 CCAAACGATCTGCTACCCTATTC 58.941 47.826 0.00 0.00 0.00 1.75
2869 4218 3.744530 GCCAAACGATCTGCTACCCTATT 60.745 47.826 0.00 0.00 0.00 1.73
2870 4219 2.224305 GCCAAACGATCTGCTACCCTAT 60.224 50.000 0.00 0.00 0.00 2.57
2871 4220 1.138266 GCCAAACGATCTGCTACCCTA 59.862 52.381 0.00 0.00 0.00 3.53
2872 4221 0.107654 GCCAAACGATCTGCTACCCT 60.108 55.000 0.00 0.00 0.00 4.34
2873 4222 0.107654 AGCCAAACGATCTGCTACCC 60.108 55.000 0.00 0.00 30.97 3.69
2874 4223 2.596904 TAGCCAAACGATCTGCTACC 57.403 50.000 0.00 0.00 35.34 3.18
2875 4224 3.458189 ACATAGCCAAACGATCTGCTAC 58.542 45.455 0.00 0.00 38.97 3.58
2876 4225 3.819564 ACATAGCCAAACGATCTGCTA 57.180 42.857 0.00 0.00 40.30 3.49
2877 4226 2.698855 ACATAGCCAAACGATCTGCT 57.301 45.000 0.00 0.00 37.84 4.24
2878 4227 5.230942 ACTATACATAGCCAAACGATCTGC 58.769 41.667 0.00 0.00 33.68 4.26
2879 4228 5.569441 CGACTATACATAGCCAAACGATCTG 59.431 44.000 0.00 0.00 33.68 2.90
2880 4229 5.241064 ACGACTATACATAGCCAAACGATCT 59.759 40.000 0.00 0.00 33.68 2.75
2881 4230 5.458891 ACGACTATACATAGCCAAACGATC 58.541 41.667 0.00 0.00 33.68 3.69
2882 4231 5.449107 ACGACTATACATAGCCAAACGAT 57.551 39.130 0.00 0.00 33.68 3.73
2883 4232 4.906065 ACGACTATACATAGCCAAACGA 57.094 40.909 0.00 0.00 33.68 3.85
2884 4233 5.513376 TGTACGACTATACATAGCCAAACG 58.487 41.667 0.00 0.00 33.68 3.60
2885 4234 6.732154 TCTGTACGACTATACATAGCCAAAC 58.268 40.000 0.00 0.00 34.59 2.93
2886 4235 6.769341 TCTCTGTACGACTATACATAGCCAAA 59.231 38.462 0.00 0.00 34.59 3.28
2887 4236 6.293698 TCTCTGTACGACTATACATAGCCAA 58.706 40.000 0.00 0.00 34.59 4.52
2888 4237 5.861727 TCTCTGTACGACTATACATAGCCA 58.138 41.667 0.00 0.00 34.59 4.75
2889 4238 5.933463 ACTCTCTGTACGACTATACATAGCC 59.067 44.000 0.00 0.00 34.59 3.93
2890 4239 7.952339 GTACTCTCTGTACGACTATACATAGC 58.048 42.308 0.00 0.00 41.58 2.97
2907 4256 9.509956 CCAAGTTATATAGCAGTAGTACTCTCT 57.490 37.037 0.00 3.53 0.00 3.10
2908 4257 8.732531 CCCAAGTTATATAGCAGTAGTACTCTC 58.267 40.741 0.00 0.00 0.00 3.20
2909 4258 7.177041 GCCCAAGTTATATAGCAGTAGTACTCT 59.823 40.741 0.00 3.94 0.00 3.24
2910 4259 7.177041 AGCCCAAGTTATATAGCAGTAGTACTC 59.823 40.741 0.00 0.00 0.00 2.59
2911 4260 7.011382 AGCCCAAGTTATATAGCAGTAGTACT 58.989 38.462 0.00 0.00 0.00 2.73
2912 4261 7.229581 AGCCCAAGTTATATAGCAGTAGTAC 57.770 40.000 0.00 0.00 0.00 2.73
2913 4262 7.614583 CCTAGCCCAAGTTATATAGCAGTAGTA 59.385 40.741 0.00 0.00 0.00 1.82
2914 4263 6.437793 CCTAGCCCAAGTTATATAGCAGTAGT 59.562 42.308 0.00 0.00 0.00 2.73
2915 4264 6.437793 ACCTAGCCCAAGTTATATAGCAGTAG 59.562 42.308 0.00 0.00 0.00 2.57
2916 4265 6.320518 ACCTAGCCCAAGTTATATAGCAGTA 58.679 40.000 0.00 0.00 0.00 2.74
2917 4266 5.155905 ACCTAGCCCAAGTTATATAGCAGT 58.844 41.667 0.00 0.00 0.00 4.40
2918 4267 5.246203 TGACCTAGCCCAAGTTATATAGCAG 59.754 44.000 0.00 0.00 0.00 4.24
2919 4268 5.152193 TGACCTAGCCCAAGTTATATAGCA 58.848 41.667 0.00 0.00 0.00 3.49
2920 4269 5.740290 TGACCTAGCCCAAGTTATATAGC 57.260 43.478 0.00 0.00 0.00 2.97
2921 4270 6.405953 CGGATGACCTAGCCCAAGTTATATAG 60.406 46.154 0.00 0.00 0.00 1.31
2922 4271 5.421056 CGGATGACCTAGCCCAAGTTATATA 59.579 44.000 0.00 0.00 0.00 0.86
2923 4272 4.223032 CGGATGACCTAGCCCAAGTTATAT 59.777 45.833 0.00 0.00 0.00 0.86
2924 4273 3.576982 CGGATGACCTAGCCCAAGTTATA 59.423 47.826 0.00 0.00 0.00 0.98
2925 4274 2.368875 CGGATGACCTAGCCCAAGTTAT 59.631 50.000 0.00 0.00 0.00 1.89
2926 4275 1.760613 CGGATGACCTAGCCCAAGTTA 59.239 52.381 0.00 0.00 0.00 2.24
2927 4276 0.541863 CGGATGACCTAGCCCAAGTT 59.458 55.000 0.00 0.00 0.00 2.66
2928 4277 0.617820 ACGGATGACCTAGCCCAAGT 60.618 55.000 0.00 0.00 0.00 3.16
2929 4278 0.179073 CACGGATGACCTAGCCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
2930 4279 0.907704 ACACGGATGACCTAGCCCAA 60.908 55.000 0.00 0.00 0.00 4.12
2931 4280 0.032912 TACACGGATGACCTAGCCCA 60.033 55.000 0.00 0.00 0.00 5.36
2932 4281 1.339097 ATACACGGATGACCTAGCCC 58.661 55.000 0.00 0.00 0.00 5.19
2933 4282 2.364324 TCAATACACGGATGACCTAGCC 59.636 50.000 0.00 0.00 0.00 3.93
2934 4283 3.553096 CCTCAATACACGGATGACCTAGC 60.553 52.174 0.00 0.00 0.00 3.42
2935 4284 3.889538 TCCTCAATACACGGATGACCTAG 59.110 47.826 0.00 0.00 0.00 3.02
2936 4285 3.905968 TCCTCAATACACGGATGACCTA 58.094 45.455 0.00 0.00 0.00 3.08
2937 4286 2.747177 TCCTCAATACACGGATGACCT 58.253 47.619 0.00 0.00 0.00 3.85
2938 4287 3.118738 AGTTCCTCAATACACGGATGACC 60.119 47.826 0.00 0.00 0.00 4.02
2939 4288 4.124851 AGTTCCTCAATACACGGATGAC 57.875 45.455 0.00 0.00 0.00 3.06
2940 4289 4.466370 AGAAGTTCCTCAATACACGGATGA 59.534 41.667 0.00 0.00 0.00 2.92
2941 4290 4.759782 AGAAGTTCCTCAATACACGGATG 58.240 43.478 0.00 0.00 0.00 3.51
2942 4291 5.163437 GGTAGAAGTTCCTCAATACACGGAT 60.163 44.000 0.00 0.00 0.00 4.18
2943 4292 4.159135 GGTAGAAGTTCCTCAATACACGGA 59.841 45.833 0.00 0.00 0.00 4.69
2944 4293 4.159879 AGGTAGAAGTTCCTCAATACACGG 59.840 45.833 0.00 0.00 0.00 4.94
2945 4294 5.326200 AGGTAGAAGTTCCTCAATACACG 57.674 43.478 0.00 0.00 0.00 4.49
2954 4303 4.345854 ACAATCGAGAGGTAGAAGTTCCT 58.654 43.478 0.00 0.00 36.70 3.36
2955 4304 4.722361 ACAATCGAGAGGTAGAAGTTCC 57.278 45.455 0.00 0.00 0.00 3.62
2956 4305 6.035217 GGTTACAATCGAGAGGTAGAAGTTC 58.965 44.000 0.00 0.00 0.00 3.01
2957 4306 5.105432 GGGTTACAATCGAGAGGTAGAAGTT 60.105 44.000 0.00 0.00 0.00 2.66
2958 4307 4.401837 GGGTTACAATCGAGAGGTAGAAGT 59.598 45.833 0.00 0.00 0.00 3.01
2959 4308 4.645588 AGGGTTACAATCGAGAGGTAGAAG 59.354 45.833 0.00 0.00 0.00 2.85
2960 4309 4.607239 AGGGTTACAATCGAGAGGTAGAA 58.393 43.478 0.00 0.00 0.00 2.10
2961 4310 4.205587 GAGGGTTACAATCGAGAGGTAGA 58.794 47.826 0.00 0.00 0.00 2.59
2962 4311 3.003482 CGAGGGTTACAATCGAGAGGTAG 59.997 52.174 2.92 0.00 38.72 3.18
2963 4312 2.947652 CGAGGGTTACAATCGAGAGGTA 59.052 50.000 2.92 0.00 38.72 3.08
2964 4313 1.749634 CGAGGGTTACAATCGAGAGGT 59.250 52.381 2.92 0.00 38.72 3.85
2965 4314 2.022195 TCGAGGGTTACAATCGAGAGG 58.978 52.381 6.98 0.00 40.29 3.69
2966 4315 3.777465 TTCGAGGGTTACAATCGAGAG 57.223 47.619 10.17 0.00 45.23 3.20
2967 4316 4.730949 AATTCGAGGGTTACAATCGAGA 57.269 40.909 10.17 4.45 45.23 4.04
2968 4317 4.868171 TGAAATTCGAGGGTTACAATCGAG 59.132 41.667 10.17 0.00 45.23 4.04
2969 4318 4.823157 TGAAATTCGAGGGTTACAATCGA 58.177 39.130 6.98 6.98 43.19 3.59
2970 4319 4.630069 ACTGAAATTCGAGGGTTACAATCG 59.370 41.667 2.68 2.68 37.79 3.34
2971 4320 6.496338 AACTGAAATTCGAGGGTTACAATC 57.504 37.500 0.00 0.00 0.00 2.67
2972 4321 6.894339 AAACTGAAATTCGAGGGTTACAAT 57.106 33.333 0.00 0.00 0.00 2.71
2973 4322 6.702716 AAAACTGAAATTCGAGGGTTACAA 57.297 33.333 0.00 0.00 0.00 2.41
2974 4323 6.702716 AAAAACTGAAATTCGAGGGTTACA 57.297 33.333 0.00 0.00 0.00 2.41
3000 4349 8.279970 TGACCATAGTTTGACCAGATTTAATG 57.720 34.615 0.00 0.00 0.00 1.90
3112 4473 4.918810 AGTTTGACCAGATTTGACCAAC 57.081 40.909 0.00 0.00 0.00 3.77
3305 4720 2.093447 CCTCTACTTTCCAAGTCCGCAT 60.093 50.000 0.00 0.00 41.77 4.73
3309 4724 4.846168 ATTCCCTCTACTTTCCAAGTCC 57.154 45.455 0.00 0.00 41.77 3.85
3361 4776 1.079490 TCACCCATCCTCTCACTCCTT 59.921 52.381 0.00 0.00 0.00 3.36
3390 4806 5.163854 CGCTCATTCCAAATCGTCTAACTTT 60.164 40.000 0.00 0.00 0.00 2.66
3413 4829 6.973474 CCTTTTAACTACTCTAGTGTGGATCG 59.027 42.308 14.33 0.00 39.39 3.69
3424 4840 7.899709 TCTCTAATCACCCCTTTTAACTACTCT 59.100 37.037 0.00 0.00 0.00 3.24
3435 4851 7.698163 ATGATTTAGTCTCTAATCACCCCTT 57.302 36.000 10.78 0.00 41.90 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.