Multiple sequence alignment - TraesCS7D01G535800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G535800 chr7D 100.000 3419 0 0 1 3419 627419592 627423010 0.000000e+00 6314
1 TraesCS7D01G535800 chr7D 95.140 2757 84 14 687 3419 290870498 290873228 0.000000e+00 4303
2 TraesCS7D01G535800 chr7D 91.022 646 28 12 1 646 290869922 290870537 0.000000e+00 845
3 TraesCS7D01G535800 chr4D 95.613 2758 85 17 687 3419 346103182 346105928 0.000000e+00 4390
4 TraesCS7D01G535800 chr4D 93.588 577 31 3 97 669 346102674 346103248 0.000000e+00 856
5 TraesCS7D01G535800 chr3A 93.933 2769 126 15 687 3419 679642585 679639823 0.000000e+00 4145
6 TraesCS7D01G535800 chr3A 87.408 683 71 9 1 683 286211628 286210961 0.000000e+00 771
7 TraesCS7D01G535800 chr3A 92.264 349 23 4 1 349 679643144 679642800 3.070000e-135 492
8 TraesCS7D01G535800 chr2A 93.680 2769 134 14 687 3419 385500784 385503547 0.000000e+00 4106
9 TraesCS7D01G535800 chr2A 93.812 1519 75 5 899 2408 5524349 5522841 0.000000e+00 2266
10 TraesCS7D01G535800 chr2A 94.667 825 38 3 899 1723 154846560 154845742 0.000000e+00 1275
11 TraesCS7D01G535800 chr5B 93.575 2786 101 23 687 3419 526173056 526170296 0.000000e+00 4082
12 TraesCS7D01G535800 chr5B 93.016 673 41 3 1 669 526173660 526172990 0.000000e+00 977
13 TraesCS7D01G535800 chr4B 92.995 2798 152 19 659 3419 574753959 574751169 0.000000e+00 4041
14 TraesCS7D01G535800 chr4B 93.287 2726 127 19 715 3402 416133092 416135799 0.000000e+00 3969
15 TraesCS7D01G535800 chr4B 92.961 2557 146 13 891 3419 139749001 139746451 0.000000e+00 3694
16 TraesCS7D01G535800 chr4B 94.156 1078 50 7 906 1975 125385473 125386545 0.000000e+00 1629
17 TraesCS7D01G535800 chr4B 91.018 334 27 3 1 334 574754639 574754309 6.730000e-122 448
18 TraesCS7D01G535800 chr4B 86.719 384 26 13 349 712 574754233 574753855 1.480000e-108 403
19 TraesCS7D01G535800 chr4B 87.004 277 19 7 392 652 416132861 416133136 2.580000e-76 296
20 TraesCS7D01G535800 chr3D 94.281 2553 118 9 891 3419 184634649 184632101 0.000000e+00 3880
21 TraesCS7D01G535800 chr3D 93.723 2565 130 11 882 3419 590680106 590682666 0.000000e+00 3816
22 TraesCS7D01G535800 chr3D 94.794 1921 59 14 801 2697 506908693 506906790 0.000000e+00 2955
23 TraesCS7D01G535800 chr3D 95.652 1518 62 2 891 2408 578239747 578238234 0.000000e+00 2435
24 TraesCS7D01G535800 chr3D 90.422 616 26 11 1 616 506909276 506908694 0.000000e+00 780
25 TraesCS7D01G535800 chr4A 93.145 2553 145 13 891 3419 616591738 616589192 0.000000e+00 3718
26 TraesCS7D01G535800 chr4A 93.081 2558 142 17 888 3419 692939620 692942168 0.000000e+00 3711
27 TraesCS7D01G535800 chr4A 93.425 1749 89 9 1697 3419 177654560 177652812 0.000000e+00 2569
28 TraesCS7D01G535800 chr4A 91.225 547 32 6 687 1222 177693398 177692857 0.000000e+00 730
29 TraesCS7D01G535800 chr4A 88.462 520 53 7 1 519 177760569 177760056 3.750000e-174 621
30 TraesCS7D01G535800 chr4A 89.881 168 15 2 516 683 177693489 177693324 7.430000e-52 215
31 TraesCS7D01G535800 chr6A 94.345 1733 77 9 687 2408 431044888 431043166 0.000000e+00 2638
32 TraesCS7D01G535800 chr6A 89.051 685 60 10 1 683 431045485 431044814 0.000000e+00 835
33 TraesCS7D01G535800 chr2B 92.308 1820 110 10 888 2682 366912318 366914132 0.000000e+00 2558
34 TraesCS7D01G535800 chr2D 91.901 1136 59 15 2175 3283 96576855 96577984 0.000000e+00 1557
35 TraesCS7D01G535800 chr2D 87.781 622 58 11 1 607 127816124 127815506 0.000000e+00 712
36 TraesCS7D01G535800 chr2D 91.617 334 25 3 1 334 615865198 615865528 3.110000e-125 459
37 TraesCS7D01G535800 chr7A 93.783 933 43 5 687 1608 604864858 604865786 0.000000e+00 1387
38 TraesCS7D01G535800 chr7A 80.433 1385 237 21 1489 2868 517989921 517991276 0.000000e+00 1026
39 TraesCS7D01G535800 chr7A 90.205 684 51 10 1 680 604864259 604864930 0.000000e+00 878


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G535800 chr7D 627419592 627423010 3418 False 6314.000000 6314 100.0000 1 3419 1 chr7D.!!$F1 3418
1 TraesCS7D01G535800 chr7D 290869922 290873228 3306 False 2574.000000 4303 93.0810 1 3419 2 chr7D.!!$F2 3418
2 TraesCS7D01G535800 chr4D 346102674 346105928 3254 False 2623.000000 4390 94.6005 97 3419 2 chr4D.!!$F1 3322
3 TraesCS7D01G535800 chr3A 679639823 679643144 3321 True 2318.500000 4145 93.0985 1 3419 2 chr3A.!!$R2 3418
4 TraesCS7D01G535800 chr3A 286210961 286211628 667 True 771.000000 771 87.4080 1 683 1 chr3A.!!$R1 682
5 TraesCS7D01G535800 chr2A 385500784 385503547 2763 False 4106.000000 4106 93.6800 687 3419 1 chr2A.!!$F1 2732
6 TraesCS7D01G535800 chr2A 5522841 5524349 1508 True 2266.000000 2266 93.8120 899 2408 1 chr2A.!!$R1 1509
7 TraesCS7D01G535800 chr2A 154845742 154846560 818 True 1275.000000 1275 94.6670 899 1723 1 chr2A.!!$R2 824
8 TraesCS7D01G535800 chr5B 526170296 526173660 3364 True 2529.500000 4082 93.2955 1 3419 2 chr5B.!!$R1 3418
9 TraesCS7D01G535800 chr4B 139746451 139749001 2550 True 3694.000000 3694 92.9610 891 3419 1 chr4B.!!$R1 2528
10 TraesCS7D01G535800 chr4B 416132861 416135799 2938 False 2132.500000 3969 90.1455 392 3402 2 chr4B.!!$F2 3010
11 TraesCS7D01G535800 chr4B 574751169 574754639 3470 True 1630.666667 4041 90.2440 1 3419 3 chr4B.!!$R2 3418
12 TraesCS7D01G535800 chr4B 125385473 125386545 1072 False 1629.000000 1629 94.1560 906 1975 1 chr4B.!!$F1 1069
13 TraesCS7D01G535800 chr3D 184632101 184634649 2548 True 3880.000000 3880 94.2810 891 3419 1 chr3D.!!$R1 2528
14 TraesCS7D01G535800 chr3D 590680106 590682666 2560 False 3816.000000 3816 93.7230 882 3419 1 chr3D.!!$F1 2537
15 TraesCS7D01G535800 chr3D 578238234 578239747 1513 True 2435.000000 2435 95.6520 891 2408 1 chr3D.!!$R2 1517
16 TraesCS7D01G535800 chr3D 506906790 506909276 2486 True 1867.500000 2955 92.6080 1 2697 2 chr3D.!!$R3 2696
17 TraesCS7D01G535800 chr4A 616589192 616591738 2546 True 3718.000000 3718 93.1450 891 3419 1 chr4A.!!$R3 2528
18 TraesCS7D01G535800 chr4A 692939620 692942168 2548 False 3711.000000 3711 93.0810 888 3419 1 chr4A.!!$F1 2531
19 TraesCS7D01G535800 chr4A 177652812 177654560 1748 True 2569.000000 2569 93.4250 1697 3419 1 chr4A.!!$R1 1722
20 TraesCS7D01G535800 chr4A 177760056 177760569 513 True 621.000000 621 88.4620 1 519 1 chr4A.!!$R2 518
21 TraesCS7D01G535800 chr4A 177692857 177693489 632 True 472.500000 730 90.5530 516 1222 2 chr4A.!!$R4 706
22 TraesCS7D01G535800 chr6A 431043166 431045485 2319 True 1736.500000 2638 91.6980 1 2408 2 chr6A.!!$R1 2407
23 TraesCS7D01G535800 chr2B 366912318 366914132 1814 False 2558.000000 2558 92.3080 888 2682 1 chr2B.!!$F1 1794
24 TraesCS7D01G535800 chr2D 96576855 96577984 1129 False 1557.000000 1557 91.9010 2175 3283 1 chr2D.!!$F1 1108
25 TraesCS7D01G535800 chr2D 127815506 127816124 618 True 712.000000 712 87.7810 1 607 1 chr2D.!!$R1 606
26 TraesCS7D01G535800 chr7A 604864259 604865786 1527 False 1132.500000 1387 91.9940 1 1608 2 chr7A.!!$F2 1607
27 TraesCS7D01G535800 chr7A 517989921 517991276 1355 False 1026.000000 1026 80.4330 1489 2868 1 chr7A.!!$F1 1379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 174 0.391661 TTGTCGATGAAGCAGAGGCC 60.392 55.0 0.00 0.00 42.56 5.19 F
999 1143 0.516439 GCTGAAGCTCTGCAGTTCAC 59.484 55.0 14.67 7.73 40.47 3.18 F
1003 1147 0.879765 AAGCTCTGCAGTTCACATGC 59.120 50.0 14.67 7.91 44.11 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2141 0.401356 TTGCTCATGAGGTTGCTCCA 59.599 50.000 23.89 8.7 39.02 3.86 R
2298 2525 0.888736 TTGACTTGGGCACATCCACG 60.889 55.000 0.00 0.0 36.38 4.94 R
2500 2744 1.063417 CCCTCCCTTGCTCCATTGATT 60.063 52.381 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 174 0.391661 TTGTCGATGAAGCAGAGGCC 60.392 55.000 0.00 0.00 42.56 5.19
262 266 1.623811 TGTAAGTGCTCCACTCTTCCC 59.376 52.381 0.00 0.00 44.62 3.97
295 305 5.806955 ACTGAAATTGGGGATTAGGGTTA 57.193 39.130 0.00 0.00 0.00 2.85
296 306 5.766590 ACTGAAATTGGGGATTAGGGTTAG 58.233 41.667 0.00 0.00 0.00 2.34
297 307 5.137412 TGAAATTGGGGATTAGGGTTAGG 57.863 43.478 0.00 0.00 0.00 2.69
298 308 4.078863 TGAAATTGGGGATTAGGGTTAGGG 60.079 45.833 0.00 0.00 0.00 3.53
299 309 2.692122 TTGGGGATTAGGGTTAGGGT 57.308 50.000 0.00 0.00 0.00 4.34
300 310 2.692122 TGGGGATTAGGGTTAGGGTT 57.308 50.000 0.00 0.00 0.00 4.11
301 311 2.951152 TGGGGATTAGGGTTAGGGTTT 58.049 47.619 0.00 0.00 0.00 3.27
304 314 5.054876 TGGGGATTAGGGTTAGGGTTTTAT 58.945 41.667 0.00 0.00 0.00 1.40
399 470 8.071177 TGGGATTAGGTGTTAACTAACTAGAC 57.929 38.462 7.22 0.00 37.12 2.59
402 473 8.534496 GGATTAGGTGTTAACTAACTAGACCAA 58.466 37.037 7.22 2.71 34.19 3.67
472 543 6.653320 CAGTTTGCTGTCATAGGGTTAACTAA 59.347 38.462 5.42 0.00 37.92 2.24
999 1143 0.516439 GCTGAAGCTCTGCAGTTCAC 59.484 55.000 14.67 7.73 40.47 3.18
1000 1144 1.875009 CTGAAGCTCTGCAGTTCACA 58.125 50.000 14.67 8.17 0.00 3.58
1001 1145 2.424557 CTGAAGCTCTGCAGTTCACAT 58.575 47.619 14.67 0.00 0.00 3.21
1002 1146 2.148768 TGAAGCTCTGCAGTTCACATG 58.851 47.619 14.67 0.00 0.00 3.21
1003 1147 0.879765 AAGCTCTGCAGTTCACATGC 59.120 50.000 14.67 7.91 44.11 4.06
1151 1295 4.391830 TGAGTTGCAAATAGTAAAGAGGCG 59.608 41.667 0.00 0.00 0.00 5.52
1298 1445 4.525996 CCACCCATCTATGTTGTTGATCA 58.474 43.478 0.00 0.00 0.00 2.92
1299 1446 4.949238 CCACCCATCTATGTTGTTGATCAA 59.051 41.667 3.38 3.38 0.00 2.57
1300 1447 5.066893 CCACCCATCTATGTTGTTGATCAAG 59.933 44.000 8.80 0.00 36.66 3.02
1325 1478 5.934781 AGGAGTTGTCTTTGAAAGTCAGAT 58.065 37.500 4.68 0.00 0.00 2.90
1804 1993 4.704057 AGCCTGATTTCAAACCTTCATCTC 59.296 41.667 0.00 0.00 0.00 2.75
1876 2066 2.548280 CCATTGTCATTTGTGCTGCCAA 60.548 45.455 0.00 0.00 0.00 4.52
1919 2126 2.172293 AGCAGAGGCCTCCTAGAAAATG 59.828 50.000 29.54 18.46 42.56 2.32
1920 2127 2.747799 GCAGAGGCCTCCTAGAAAATGG 60.748 54.545 29.54 7.11 31.76 3.16
1921 2128 2.507471 CAGAGGCCTCCTAGAAAATGGT 59.493 50.000 29.54 2.69 31.76 3.55
1922 2129 3.711704 CAGAGGCCTCCTAGAAAATGGTA 59.288 47.826 29.54 0.00 31.76 3.25
1923 2130 3.712218 AGAGGCCTCCTAGAAAATGGTAC 59.288 47.826 29.54 0.00 31.76 3.34
1924 2131 3.454812 GAGGCCTCCTAGAAAATGGTACA 59.545 47.826 23.19 0.00 36.82 2.90
1925 2132 3.850173 AGGCCTCCTAGAAAATGGTACAA 59.150 43.478 0.00 0.00 34.18 2.41
1926 2133 4.478686 AGGCCTCCTAGAAAATGGTACAAT 59.521 41.667 0.00 0.00 34.18 2.71
1927 2134 5.632427 AGGCCTCCTAGAAAATGGTACAATG 60.632 44.000 0.00 0.00 34.18 2.82
1928 2135 7.780714 AGGCCTCCTAGAAAATGGTACAATGA 61.781 42.308 0.00 0.00 34.18 2.57
1929 2136 9.486389 AGGCCTCCTAGAAAATGGTACAATGAG 62.486 44.444 0.00 0.00 34.18 2.90
2000 2227 5.427806 AGGATCAACATCAATTCAGAGAGGA 59.572 40.000 0.00 0.00 0.00 3.71
2058 2285 6.876257 ACTTCAAATATCACAGGAACTCAGAC 59.124 38.462 0.00 0.00 34.60 3.51
2265 2492 4.937620 TCTGATCTAACAACTGGCATTCAC 59.062 41.667 0.00 0.00 0.00 3.18
2298 2525 1.336125 GCTTGCATGGAGAAGTATGGC 59.664 52.381 1.34 0.00 0.00 4.40
2321 2548 1.549203 GATGTGCCCAAGTCAATGGT 58.451 50.000 0.00 0.00 38.91 3.55
2377 2604 4.707448 TGTTAGGAGACCACAAAAAGCAAA 59.293 37.500 0.00 0.00 0.00 3.68
2483 2727 1.776667 CCCATCTAGGCCCAAGATTCA 59.223 52.381 14.18 0.00 31.22 2.57
2487 2731 4.467769 CATCTAGGCCCAAGATTCAATGT 58.532 43.478 14.18 0.00 31.22 2.71
2495 2739 4.678840 GCCCAAGATTCAATGTCATGTTCC 60.679 45.833 0.00 0.00 0.00 3.62
2923 3181 9.667989 GATAGTAGCTTAGCTAGTTTAACTGTC 57.332 37.037 24.28 17.22 41.39 3.51
2940 3198 1.306141 TCTGTCCCAGGGCCTACTG 60.306 63.158 5.28 5.54 38.21 2.74
2973 3231 7.599998 GTGAATGTTGTCTTTCCTAATTGCAAT 59.400 33.333 5.99 5.99 0.00 3.56
3083 3344 5.868454 TGCCTATGCATATAGTGAACACAT 58.132 37.500 6.92 2.37 44.23 3.21
3113 3374 5.244402 ACATTGCAATGAATGACCTGAGAAA 59.756 36.000 38.99 0.00 39.67 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
295 305 3.473113 ACATGGAGGCAATAAAACCCT 57.527 42.857 0.00 0.00 0.00 4.34
296 306 4.551702 AAACATGGAGGCAATAAAACCC 57.448 40.909 0.00 0.00 0.00 4.11
297 307 5.109210 GCTAAACATGGAGGCAATAAAACC 58.891 41.667 0.00 0.00 0.00 3.27
298 308 5.576774 GTGCTAAACATGGAGGCAATAAAAC 59.423 40.000 0.00 0.00 34.65 2.43
299 309 5.480073 AGTGCTAAACATGGAGGCAATAAAA 59.520 36.000 0.00 0.00 34.65 1.52
300 310 5.016173 AGTGCTAAACATGGAGGCAATAAA 58.984 37.500 0.00 0.00 34.65 1.40
301 311 4.599041 AGTGCTAAACATGGAGGCAATAA 58.401 39.130 0.00 0.00 34.65 1.40
304 314 2.040278 AGAGTGCTAAACATGGAGGCAA 59.960 45.455 0.00 0.00 34.65 4.52
364 435 5.010708 ACACCTAATCCCAATTTGGACTT 57.989 39.130 17.24 11.40 40.96 3.01
439 510 6.088824 CCTATGACAGCAAACTGATGTTTTC 58.911 40.000 0.00 0.00 45.71 2.29
559 666 9.180678 CAACAATTCCAATAAACACAGTTACTC 57.819 33.333 0.00 0.00 0.00 2.59
921 1065 7.894708 ACATCCAAAATGTCATCATACAAACA 58.105 30.769 0.00 0.00 33.49 2.83
1002 1146 9.499585 GCAATCATATTCAGATATGTTACATGC 57.500 33.333 8.26 0.15 43.63 4.06
1151 1295 2.638363 AGAACCTTACACTCCTCAACCC 59.362 50.000 0.00 0.00 0.00 4.11
1298 1445 6.180472 TGACTTTCAAAGACAACTCCTTCTT 58.820 36.000 3.49 0.00 33.32 2.52
1299 1446 5.745227 TGACTTTCAAAGACAACTCCTTCT 58.255 37.500 3.49 0.00 30.54 2.85
1300 1447 5.817816 TCTGACTTTCAAAGACAACTCCTTC 59.182 40.000 3.49 0.00 33.08 3.46
1804 1993 7.444629 TCAACAATCCTTTCTCTTCTTCATG 57.555 36.000 0.00 0.00 0.00 3.07
1876 2066 1.145738 TGCCCTGCTCTTCCTTTTCTT 59.854 47.619 0.00 0.00 0.00 2.52
1919 2126 5.402398 GTTGCTCCATTTTCTCATTGTACC 58.598 41.667 0.00 0.00 0.00 3.34
1920 2127 5.183904 AGGTTGCTCCATTTTCTCATTGTAC 59.816 40.000 1.79 0.00 39.02 2.90
1921 2128 5.324409 AGGTTGCTCCATTTTCTCATTGTA 58.676 37.500 1.79 0.00 39.02 2.41
1922 2129 4.154942 AGGTTGCTCCATTTTCTCATTGT 58.845 39.130 1.79 0.00 39.02 2.71
1923 2130 4.219070 TGAGGTTGCTCCATTTTCTCATTG 59.781 41.667 0.00 0.00 39.02 2.82
1924 2131 4.410099 TGAGGTTGCTCCATTTTCTCATT 58.590 39.130 0.00 0.00 39.02 2.57
1925 2132 4.038271 TGAGGTTGCTCCATTTTCTCAT 57.962 40.909 0.00 0.00 39.02 2.90
1926 2133 3.507162 TGAGGTTGCTCCATTTTCTCA 57.493 42.857 0.00 0.00 39.02 3.27
1927 2134 4.012374 TCATGAGGTTGCTCCATTTTCTC 58.988 43.478 0.00 0.00 39.02 2.87
1928 2135 4.015084 CTCATGAGGTTGCTCCATTTTCT 58.985 43.478 15.38 0.00 39.02 2.52
1929 2136 3.428589 GCTCATGAGGTTGCTCCATTTTC 60.429 47.826 23.89 0.00 39.02 2.29
1930 2137 2.494870 GCTCATGAGGTTGCTCCATTTT 59.505 45.455 23.89 0.00 39.02 1.82
1931 2138 2.097825 GCTCATGAGGTTGCTCCATTT 58.902 47.619 23.89 0.00 39.02 2.32
1932 2139 1.005097 TGCTCATGAGGTTGCTCCATT 59.995 47.619 23.89 0.00 39.02 3.16
1933 2140 0.622136 TGCTCATGAGGTTGCTCCAT 59.378 50.000 23.89 0.00 39.02 3.41
1934 2141 0.401356 TTGCTCATGAGGTTGCTCCA 59.599 50.000 23.89 8.70 39.02 3.86
2000 2227 7.566760 TGAGTGATGTGTAAGTTCAACAAAT 57.433 32.000 0.00 0.00 0.00 2.32
2058 2285 6.980397 GGTTGCATTCTACAATTATCCTTTGG 59.020 38.462 0.00 0.00 0.00 3.28
2097 2324 8.995027 TTATAACTGATGCCACCATAAAGAAT 57.005 30.769 0.00 0.00 0.00 2.40
2214 2441 2.744202 CAGTGACTCATACTTGTTGGCC 59.256 50.000 0.00 0.00 0.00 5.36
2265 2492 3.616821 CCATGCAAGCATCAATCAAAGTG 59.383 43.478 4.24 0.00 33.90 3.16
2298 2525 0.888736 TTGACTTGGGCACATCCACG 60.889 55.000 0.00 0.00 36.38 4.94
2321 2548 8.540388 CAATAGCTAGGTTCTTTGCCCTATATA 58.460 37.037 0.00 0.00 32.98 0.86
2500 2744 1.063417 CCCTCCCTTGCTCCATTGATT 60.063 52.381 0.00 0.00 0.00 2.57
2617 2869 6.377996 CCCATCAACACCTGAATGAGATAAAA 59.622 38.462 0.00 0.00 37.67 1.52
2621 2873 3.267812 ACCCATCAACACCTGAATGAGAT 59.732 43.478 0.00 0.00 37.67 2.75
2940 3198 4.919754 GGAAAGACAACATTCACTGCATTC 59.080 41.667 0.00 0.00 0.00 2.67
3037 3296 7.391554 GGCAGCATTATCCATATACTTCTTCAA 59.608 37.037 0.00 0.00 0.00 2.69
3083 3344 8.747471 TCAGGTCATTCATTGCAATGTTAAATA 58.253 29.630 32.67 14.57 37.65 1.40
3113 3374 3.726557 TCCAAGCTTCCTCACATTCAT 57.273 42.857 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.