AutoCloner

Multiple sequence alignment - TraesCS7D01G534300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G534300	chr7D	100.000	2822	0	0	1	2822	627070308	627073129	0.000000e+00	5212
1	TraesCS7D01G534300	chr7D	84.067	1682	148	66	717	2321	627058894	627060532	0.000000e+00	1511
2	TraesCS7D01G534300	chr7D	85.444	845	91	14	1000	1822	626909014	626909848	0.000000e+00	850
3	TraesCS7D01G534300	chr7D	80.473	845	146	8	997	1822	626946412	626947256	1.850000e-176	628
4	TraesCS7D01G534300	chr7D	79.111	742	132	12	1098	1822	626922876	626923611	9.080000e-135	490
5	TraesCS7D01G534300	chr7D	78.677	741	111	29	1000	1718	627024015	627024730	1.540000e-122	449
6	TraesCS7D01G534300	chr7D	82.700	237	32	5	2554	2787	627083388	627083618	4.770000e-48	202
7	TraesCS7D01G534300	chr7A	89.455	1944	130	22	935	2822	722482102	722484026	0.000000e+00	2385
8	TraesCS7D01G534300	chr7A	87.371	1259	79	42	1	1227	722571127	722572337	0.000000e+00	1371
9	TraesCS7D01G534300	chr7A	89.767	1075	66	17	628	1674	722451091	722452149	0.000000e+00	1336
10	TraesCS7D01G534300	chr7A	87.816	673	57	8	1222	1869	722572789	722573461	0.000000e+00	765
11	TraesCS7D01G534300	chr7A	84.848	792	77	20	2060	2820	722577856	722578635	0.000000e+00	758
12	TraesCS7D01G534300	chr7A	80.906	817	126	20	1018	1822	722414384	722415182	3.990000e-173	617
13	TraesCS7D01G534300	chr7A	83.609	665	65	19	1	640	722447572	722448217	4.050000e-163	584
14	TraesCS7D01G534300	chr7A	80.728	467	53	17	1868	2321	722481306	722481748	2.100000e-86	329
15	TraesCS7D01G534300	chr7A	79.303	488	76	16	2277	2760	722538366	722538832	4.540000e-83	318
16	TraesCS7D01G534300	chr7A	82.051	312	45	7	2443	2753	722589809	722590110	3.610000e-64	255
17	TraesCS7D01G534300	chr7B	88.462	1248	105	26	653	1871	727654442	727653205	0.000000e+00	1471
18	TraesCS7D01G534300	chr7B	88.636	968	84	16	1868	2822	727653175	727652221	0.000000e+00	1155
19	TraesCS7D01G534300	chr7B	83.829	841	97	14	1000	1822	727186270	727185451	0.000000e+00	763
20	TraesCS7D01G534300	chr7B	83.550	845	93	20	1001	1822	727392089	727392910	0.000000e+00	749
21	TraesCS7D01G534300	chr7B	79.561	729	105	20	1000	1705	727328230	727327523	5.470000e-132	481
22	TraesCS7D01G534300	chr7B	82.065	552	71	13	1	536	727656016	727655477	1.990000e-121	446
23	TraesCS7D01G534300	chr7B	86.104	403	47	8	151	545	405061967	405062368	2.600000e-115	425
24	TraesCS7D01G534300	chrUn	83.240	895	118	17	1000	1868	83608266	83609154	0.000000e+00	793
25	TraesCS7D01G534300	chr2D	85.861	389	45	6	159	544	335683918	335684299	3.380000e-109	405
26	TraesCS7D01G534300	chr2D	77.749	382	67	12	158	525	598372615	598372238	4.730000e-53	219
27	TraesCS7D01G534300	chr4D	82.396	409	60	8	158	560	495994199	495993797	2.080000e-91	346
28	TraesCS7D01G534300	chr4D	82.653	392	60	6	158	544	378496864	378497252	9.680000e-90	340
29	TraesCS7D01G534300	chr3D	82.750	400	58	9	141	534	580987292	580987686	2.080000e-91	346
30	TraesCS7D01G534300	chr3D	82.143	392	58	10	158	544	458310068	458309684	2.710000e-85	326
31	TraesCS7D01G534300	chr5D	82.873	362	58	4	188	545	531900611	531900250	3.510000e-84	322
32	TraesCS7D01G534300	chr2A	79.024	410	67	10	150	544	385979921	385980326	2.160000e-66	263
33	TraesCS7D01G534300	chr3A	79.385	325	59	5	230	547	38015314	38014991	3.660000e-54	222

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G534300	chr7D	627070308	627073129	2821	False	5212	5212	100.000000	1	2822	1	chr7D.!!$F6	2821
1	TraesCS7D01G534300	chr7D	627058894	627060532	1638	False	1511	1511	84.067000	717	2321	1	chr7D.!!$F5	1604
2	TraesCS7D01G534300	chr7D	626909014	626909848	834	False	850	850	85.444000	1000	1822	1	chr7D.!!$F1	822
3	TraesCS7D01G534300	chr7D	626946412	626947256	844	False	628	628	80.473000	997	1822	1	chr7D.!!$F3	825
4	TraesCS7D01G534300	chr7D	626922876	626923611	735	False	490	490	79.111000	1098	1822	1	chr7D.!!$F2	724
5	TraesCS7D01G534300	chr7D	627024015	627024730	715	False	449	449	78.677000	1000	1718	1	chr7D.!!$F4	718
6	TraesCS7D01G534300	chr7A	722481306	722484026	2720	False	1357	2385	85.091500	935	2822	2	chr7A.!!$F6	1887
7	TraesCS7D01G534300	chr7A	722571127	722573461	2334	False	1068	1371	87.593500	1	1869	2	chr7A.!!$F7	1868
8	TraesCS7D01G534300	chr7A	722447572	722452149	4577	False	960	1336	86.688000	1	1674	2	chr7A.!!$F5	1673
9	TraesCS7D01G534300	chr7A	722577856	722578635	779	False	758	758	84.848000	2060	2820	1	chr7A.!!$F3	760
10	TraesCS7D01G534300	chr7A	722414384	722415182	798	False	617	617	80.906000	1018	1822	1	chr7A.!!$F1	804
11	TraesCS7D01G534300	chr7B	727652221	727656016	3795	True	1024	1471	86.387667	1	2822	3	chr7B.!!$R3	2821
12	TraesCS7D01G534300	chr7B	727185451	727186270	819	True	763	763	83.829000	1000	1822	1	chr7B.!!$R1	822
13	TraesCS7D01G534300	chr7B	727392089	727392910	821	False	749	749	83.550000	1001	1822	1	chr7B.!!$F2	821
14	TraesCS7D01G534300	chr7B	727327523	727328230	707	True	481	481	79.561000	1000	1705	1	chr7B.!!$R2	705
15	TraesCS7D01G534300	chrUn	83608266	83609154	888	False	793	793	83.240000	1000	1868	1	chrUn.!!$F1	868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
870	3911	0.039035	TTTCCAAGCTAACCCGGCAT	59.961	50.0	0.00	0.0	0.0	4.40	F
888	3929	0.266152	ATGGCTGCCTCCTACCTACT	59.734	55.0	21.03	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1749	5343	0.107643	TCCTGAACACCATGTCGCAA	59.892	50.0	0.00	0.0	0.0	4.85	R
2350	6011	0.169009	GAACATGCTTGGAAGTCGGC	59.831	55.0	4.44	0.0	0.0	5.54	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	47	6.248433	ACCAGCTGGAAGAAAATTTAGATGA	58.752	36.000	39.19	0.00	38.94	2.92
104	108	8.214364	AGAGTTCTGTCTGGTAGAAAAAGAAAT	58.786	33.333	0.00	0.00	36.06	2.17
186	201	2.685017	AGGCTCATCTGCACCCGA	60.685	61.111	0.00	0.00	34.04	5.14
279	306	4.385748	GGTCCGCTTCAATTTTCAAATCAC	59.614	41.667	0.00	0.00	0.00	3.06
280	307	4.385748	GTCCGCTTCAATTTTCAAATCACC	59.614	41.667	0.00	0.00	0.00	4.02
412	442	9.210329	TCAGATGTCCAAATGATTTGAAAATTG	57.790	29.630	18.82	9.76	43.26	2.32
460	491	6.166984	TCTACCATGCAAAAACAATTGGAA	57.833	33.333	10.83	0.00	34.21	3.53
514	547	3.858868	TTCGTCAGCACGGGAGCAC	62.859	63.158	0.00	0.00	46.70	4.40
736	3760	2.401766	GCTCCCCAACATGACAGCG	61.402	63.158	0.00	0.00	0.00	5.18
737	3761	1.296392	CTCCCCAACATGACAGCGA	59.704	57.895	0.00	0.00	0.00	4.93
738	3762	0.742281	CTCCCCAACATGACAGCGAG	60.742	60.000	0.00	0.00	0.00	5.03
739	3763	2.401766	CCCCAACATGACAGCGAGC	61.402	63.158	0.00	0.00	0.00	5.03
751	3775	1.079543	AGCGAGCTAAGGCACACAG	60.080	57.895	0.00	0.00	41.70	3.66
801	3839	1.893168	TTTTGACTAACGCGGCGAGC	61.893	55.000	30.94	12.90	43.95	5.03
868	3909	2.180674	CTTTCCAAGCTAACCCGGC	58.819	57.895	0.00	0.00	0.00	6.13
869	3910	0.608035	CTTTCCAAGCTAACCCGGCA	60.608	55.000	0.00	0.00	0.00	5.69
870	3911	0.039035	TTTCCAAGCTAACCCGGCAT	59.961	50.000	0.00	0.00	0.00	4.40
871	3912	0.679640	TTCCAAGCTAACCCGGCATG	60.680	55.000	0.00	0.00	0.00	4.06
872	3913	2.120909	CCAAGCTAACCCGGCATGG	61.121	63.158	0.00	0.00	41.11	3.66
873	3914	2.440247	AAGCTAACCCGGCATGGC	60.440	61.111	9.69	9.69	35.87	4.40
874	3915	2.983879	AAGCTAACCCGGCATGGCT	61.984	57.895	18.09	9.33	35.87	4.75
875	3916	3.211963	GCTAACCCGGCATGGCTG	61.212	66.667	18.09	10.91	35.87	4.85
884	3925	2.203266	GCATGGCTGCCTCCTACC	60.203	66.667	21.03	0.00	42.88	3.18
885	3926	2.750657	GCATGGCTGCCTCCTACCT	61.751	63.158	21.03	0.00	42.88	3.08
886	3927	1.410850	GCATGGCTGCCTCCTACCTA	61.411	60.000	21.03	0.00	42.88	3.08
887	3928	0.394565	CATGGCTGCCTCCTACCTAC	59.605	60.000	21.03	0.00	0.00	3.18
888	3929	0.266152	ATGGCTGCCTCCTACCTACT	59.734	55.000	21.03	0.00	0.00	2.57
889	3930	0.687757	TGGCTGCCTCCTACCTACTG	60.688	60.000	21.03	0.00	0.00	2.74
909	3979	8.190784	CCTACTGCATATATACAACATCGATCA	58.809	37.037	0.00	0.00	0.00	2.92
925	3995	2.627221	CGATCATCTCCTCCATCACACT	59.373	50.000	0.00	0.00	0.00	3.55
930	4000	2.750814	TCTCCTCCATCACACTGCATA	58.249	47.619	0.00	0.00	0.00	3.14
932	4002	4.482990	TCTCCTCCATCACACTGCATATA	58.517	43.478	0.00	0.00	0.00	0.86
933	4003	5.089434	TCTCCTCCATCACACTGCATATAT	58.911	41.667	0.00	0.00	0.00	0.86
934	4004	6.256053	TCTCCTCCATCACACTGCATATATA	58.744	40.000	0.00	0.00	0.00	0.86
936	4006	5.187772	TCCTCCATCACACTGCATATATACC	59.812	44.000	0.00	0.00	0.00	2.73
937	4007	5.046376	CCTCCATCACACTGCATATATACCA	60.046	44.000	0.00	0.00	0.00	3.25
1167	4245	1.198094	TCCGTTCCTGGATCCAGCAA	61.198	55.000	32.97	24.53	42.35	3.91
1170	4248	1.134280	CGTTCCTGGATCCAGCAAGAT	60.134	52.381	32.97	0.00	42.35	2.40
1486	5052	1.140589	CTCGCTGCGTCCATCTTCT	59.859	57.895	22.48	0.00	0.00	2.85
1490	5056	0.391661	GCTGCGTCCATCTTCTCCAA	60.392	55.000	0.00	0.00	0.00	3.53
1491	5057	1.649664	CTGCGTCCATCTTCTCCAAG	58.350	55.000	0.00	0.00	0.00	3.61
1492	5058	1.205655	CTGCGTCCATCTTCTCCAAGA	59.794	52.381	0.00	0.00	43.06	3.02
1493	5059	1.205655	TGCGTCCATCTTCTCCAAGAG	59.794	52.381	0.00	0.00	42.13	2.85
1500	5084	3.370315	CCATCTTCTCCAAGAGGAACCTG	60.370	52.174	0.00	0.00	45.19	4.00
1507	5091	1.774217	AAGAGGAACCTGGTGGCCA	60.774	57.895	18.03	0.00	36.63	5.36
1653	5244	2.767445	GGCCACGTTTATTCCCGCC	61.767	63.158	0.00	0.00	0.00	6.13
1924	5562	3.604582	AGAGGATTTTGCTACAGCTCAC	58.395	45.455	2.44	0.00	42.66	3.51
1938	5576	4.960938	ACAGCTCACATGTTCAGAGTTTA	58.039	39.130	11.95	0.00	0.00	2.01
1981	5620	6.537355	AGGTGTCTTCAATTTCTCATTCTGA	58.463	36.000	0.00	0.00	0.00	3.27
1982	5621	6.429385	AGGTGTCTTCAATTTCTCATTCTGAC	59.571	38.462	0.00	0.00	0.00	3.51
1986	5625	8.509690	TGTCTTCAATTTCTCATTCTGACATTC	58.490	33.333	0.00	0.00	0.00	2.67
2086	5734	3.088552	GTGAGTCGTTTGTTGTTTCGTG	58.911	45.455	0.00	0.00	0.00	4.35
2350	6011	4.159135	AGCAGATTCACCAAATTAGCAAGG	59.841	41.667	0.00	0.00	32.76	3.61
2358	6019	2.159379	CCAAATTAGCAAGGCCGACTTC	60.159	50.000	0.00	0.00	37.29	3.01
2550	6215	3.299340	ACCGCATCGTCAATATAGTCC	57.701	47.619	0.00	0.00	0.00	3.85
2560	6225	6.206498	TCGTCAATATAGTCCATCTGTTTCG	58.794	40.000	0.00	0.00	0.00	3.46
2657	6350	3.636300	CCAGTCTAGCAGCTCTAGTCATT	59.364	47.826	0.00	3.34	44.10	2.57
2753	6453	9.840427	ACGGTTTTCTGACAATGATTAATAAAG	57.160	29.630	0.00	0.00	0.00	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	39	3.913799	TCCCACCTTGTCCTTCATCTAAA	59.086	43.478	0.00	0.00	0.00	1.85
45	47	0.193574	TCCTCTCCCACCTTGTCCTT	59.806	55.000	0.00	0.00	0.00	3.36
131	135	5.578005	TCACGAAGGGAGTACTAGATTTG	57.422	43.478	0.00	0.00	0.00	2.32
199	214	9.875675	TGTTTGAATCTTTTTGAACTTTTTGTG	57.124	25.926	0.00	0.00	0.00	3.33
207	234	9.339492	TGCAATTTTGTTTGAATCTTTTTGAAC	57.661	25.926	0.00	0.00	0.00	3.18
211	238	8.468399	ACCATGCAATTTTGTTTGAATCTTTTT	58.532	25.926	0.00	0.00	0.00	1.94
216	243	7.887996	TCTACCATGCAATTTTGTTTGAATC	57.112	32.000	0.00	0.00	0.00	2.52
217	244	8.674263	TTTCTACCATGCAATTTTGTTTGAAT	57.326	26.923	0.00	0.00	0.00	2.57
218	245	8.498054	TTTTCTACCATGCAATTTTGTTTGAA	57.502	26.923	0.00	0.00	0.00	2.69
219	246	8.674263	ATTTTCTACCATGCAATTTTGTTTGA	57.326	26.923	0.00	0.00	0.00	2.69
220	247	9.733219	AAATTTTCTACCATGCAATTTTGTTTG	57.267	25.926	0.00	0.00	0.00	2.93
223	250	9.777297	ACTAAATTTTCTACCATGCAATTTTGT	57.223	25.926	0.00	0.00	31.97	2.83
279	306	3.269178	GAGAGCTTTTCAGATGTCCAGG	58.731	50.000	0.00	0.00	0.00	4.45
280	307	2.928757	CGAGAGCTTTTCAGATGTCCAG	59.071	50.000	0.00	0.00	0.00	3.86
323	350	5.826601	TTTTACTGTTCATGCACTGTTCA	57.173	34.783	12.69	0.00	31.81	3.18
348	375	7.745620	AAAAAGACAAATTCGGAGTCTGTAT	57.254	32.000	0.00	0.00	41.45	2.29
374	403	4.527944	TGGACATCTGAGTAACTCTCGAT	58.472	43.478	0.00	0.00	45.46	3.59
578	658	2.763933	CGGAGTGAGCTATGCATTCAT	58.236	47.619	3.54	0.00	36.73	2.57
580	660	0.864455	GCGGAGTGAGCTATGCATTC	59.136	55.000	3.54	0.00	0.00	2.67
582	662	1.070445	GGCGGAGTGAGCTATGCAT	59.930	57.895	3.79	3.79	34.52	3.96
736	3760	1.936547	GTATGCTGTGTGCCTTAGCTC	59.063	52.381	0.00	0.00	42.00	4.09
737	3761	1.407437	GGTATGCTGTGTGCCTTAGCT	60.407	52.381	0.00	0.00	42.00	3.32
738	3762	1.017387	GGTATGCTGTGTGCCTTAGC	58.983	55.000	0.00	0.00	42.00	3.09
739	3763	2.401583	TGGTATGCTGTGTGCCTTAG	57.598	50.000	0.00	0.00	42.00	2.18
751	3775	2.680913	GCGGCGATGGATGGTATGC	61.681	63.158	12.98	0.00	0.00	3.14
801	3839	3.151022	GCACGAGGAGGAGGAGGG	61.151	72.222	0.00	0.00	0.00	4.30
868	3909	0.394565	GTAGGTAGGAGGCAGCCATG	59.605	60.000	15.80	0.00	0.00	3.66
869	3910	0.266152	AGTAGGTAGGAGGCAGCCAT	59.734	55.000	15.80	1.09	0.00	4.40
870	3911	0.687757	CAGTAGGTAGGAGGCAGCCA	60.688	60.000	15.80	0.00	0.00	4.75
871	3912	2.034048	GCAGTAGGTAGGAGGCAGCC	62.034	65.000	1.84	1.84	0.00	4.85
872	3913	1.330655	TGCAGTAGGTAGGAGGCAGC	61.331	60.000	0.00	0.00	0.00	5.25
873	3914	1.418334	ATGCAGTAGGTAGGAGGCAG	58.582	55.000	0.00	0.00	34.43	4.85
874	3915	2.767644	TATGCAGTAGGTAGGAGGCA	57.232	50.000	0.00	0.00	35.54	4.75
875	3916	5.892119	TGTATATATGCAGTAGGTAGGAGGC	59.108	44.000	0.00	0.00	0.00	4.70
876	3917	7.396339	TGTTGTATATATGCAGTAGGTAGGAGG	59.604	40.741	3.63	0.00	0.00	4.30
877	3918	8.349568	TGTTGTATATATGCAGTAGGTAGGAG	57.650	38.462	3.63	0.00	0.00	3.69
878	3919	8.895141	ATGTTGTATATATGCAGTAGGTAGGA	57.105	34.615	3.63	0.00	0.00	2.94
879	3920	7.915923	CGATGTTGTATATATGCAGTAGGTAGG	59.084	40.741	3.63	0.00	0.00	3.18
880	3921	8.674607	TCGATGTTGTATATATGCAGTAGGTAG	58.325	37.037	3.63	0.00	0.00	3.18
881	3922	8.570068	TCGATGTTGTATATATGCAGTAGGTA	57.430	34.615	3.63	0.00	0.00	3.08
882	3923	7.462571	TCGATGTTGTATATATGCAGTAGGT	57.537	36.000	3.63	0.00	0.00	3.08
883	3924	8.190784	TGATCGATGTTGTATATATGCAGTAGG	58.809	37.037	0.54	0.00	0.00	3.18
884	3925	9.741647	ATGATCGATGTTGTATATATGCAGTAG	57.258	33.333	0.54	0.00	0.00	2.57
885	3926	9.736023	GATGATCGATGTTGTATATATGCAGTA	57.264	33.333	0.54	0.00	0.00	2.74
886	3927	8.473219	AGATGATCGATGTTGTATATATGCAGT	58.527	33.333	0.54	0.00	0.00	4.40
887	3928	8.868635	AGATGATCGATGTTGTATATATGCAG	57.131	34.615	0.54	0.00	0.00	4.41
888	3929	7.922811	GGAGATGATCGATGTTGTATATATGCA	59.077	37.037	0.54	0.00	0.00	3.96
889	3930	8.140628	AGGAGATGATCGATGTTGTATATATGC	58.859	37.037	0.54	0.00	0.00	3.14
909	3979	1.576577	TGCAGTGTGATGGAGGAGAT	58.423	50.000	0.00	0.00	0.00	2.75
925	3995	5.010617	ACGTGTGAGATGTGGTATATATGCA	59.989	40.000	3.10	0.00	0.00	3.96
930	4000	5.048643	GCTAGACGTGTGAGATGTGGTATAT	60.049	44.000	0.00	0.00	0.00	0.86
932	4002	3.066900	GCTAGACGTGTGAGATGTGGTAT	59.933	47.826	0.00	0.00	0.00	2.73
933	4003	2.422479	GCTAGACGTGTGAGATGTGGTA	59.578	50.000	0.00	0.00	0.00	3.25
934	4004	1.202582	GCTAGACGTGTGAGATGTGGT	59.797	52.381	0.00	0.00	0.00	4.16
936	4006	2.524034	CTGCTAGACGTGTGAGATGTG	58.476	52.381	0.00	0.00	0.00	3.21
937	4007	1.135257	GCTGCTAGACGTGTGAGATGT	60.135	52.381	0.00	0.00	0.00	3.06
1167	4245	0.565674	GGAGGGAGGAGGAAGGATCT	59.434	60.000	0.00	0.00	0.00	2.75
1170	4248	3.010226	CGGGAGGGAGGAGGAAGGA	62.010	68.421	0.00	0.00	0.00	3.36
1211	4319	2.043450	CGAGGGAGGAGTGGAGCT	60.043	66.667	0.00	0.00	0.00	4.09
1486	5052	1.779061	GCCACCAGGTTCCTCTTGGA	61.779	60.000	15.65	0.00	44.79	3.53
1490	5056	1.142688	AATGGCCACCAGGTTCCTCT	61.143	55.000	8.16	0.00	36.75	3.69
1491	5057	0.623723	TAATGGCCACCAGGTTCCTC	59.376	55.000	8.16	0.00	36.75	3.71
1492	5058	0.625849	CTAATGGCCACCAGGTTCCT	59.374	55.000	8.16	0.00	36.75	3.36
1493	5059	1.037579	GCTAATGGCCACCAGGTTCC	61.038	60.000	8.16	0.00	36.75	3.62
1507	5091	3.930012	GGCCTCCTCGCCGCTAAT	61.930	66.667	0.00	0.00	39.64	1.73
1653	5244	3.358076	GACGGTCCTCCTGGCGAAG	62.358	68.421	0.00	0.00	0.00	3.79
1746	5340	1.210155	GAACACCATGTCGCAAGCC	59.790	57.895	0.00	0.00	37.18	4.35
1749	5343	0.107643	TCCTGAACACCATGTCGCAA	59.892	50.000	0.00	0.00	0.00	4.85
1924	5562	7.471721	TGTTGTCAAACTAAACTCTGAACATG	58.528	34.615	0.00	0.00	37.19	3.21
1938	5576	6.354130	ACACCTTGTACTATGTTGTCAAACT	58.646	36.000	0.00	0.00	37.19	2.66
1981	5620	2.093075	AGCTAGCTGCATCTGTGAATGT	60.093	45.455	18.57	0.00	45.94	2.71
1982	5621	2.562635	AGCTAGCTGCATCTGTGAATG	58.437	47.619	18.57	0.00	45.94	2.67
1986	5625	2.471818	CACTAGCTAGCTGCATCTGTG	58.528	52.381	27.68	19.00	45.94	3.66
2086	5734	2.357075	GGTTAGCACAAGGTAAGCTCC	58.643	52.381	8.77	0.00	46.87	4.70
2146	5795	5.551233	AGAAATGTTCCATCGAAGTGAAGA	58.449	37.500	0.00	0.00	0.00	2.87
2184	5842	5.187186	GGGTGTCTTAGATGAGTTGGAACTA	59.813	44.000	0.00	0.00	39.88	2.24
2293	5952	6.646240	GCTTGGAGAATTTTTGCTCACAATTA	59.354	34.615	0.00	0.00	35.21	1.40
2309	5968	4.005650	CTGCTTCACAATAGCTTGGAGAA	58.994	43.478	0.00	0.00	39.38	2.87
2350	6011	0.169009	GAACATGCTTGGAAGTCGGC	59.831	55.000	4.44	0.00	0.00	5.54
2358	6019	2.214376	TAGGGGTTGAACATGCTTGG	57.786	50.000	4.44	0.00	0.00	3.61
2403	6066	6.464222	TCGACTTACATGAGACCAAAAGAAT	58.536	36.000	0.00	0.00	0.00	2.40
2528	6193	4.278919	TGGACTATATTGACGATGCGGTAA	59.721	41.667	0.00	0.00	0.00	2.85
2529	6194	3.822167	TGGACTATATTGACGATGCGGTA	59.178	43.478	0.00	0.00	0.00	4.02
2550	6215	7.591057	TCAAAGTCAAATTAAGCGAAACAGATG	59.409	33.333	0.00	0.00	0.00	2.90
2560	6225	6.668325	GCTGCGATTTCAAAGTCAAATTAAGC	60.668	38.462	0.00	0.00	0.00	3.09
2722	6422	6.817765	ATCATTGTCAGAAAACCGTGTTAT	57.182	33.333	0.00	0.00	0.00	1.89
2753	6453	8.561738	TTTAAGGAAACAGTTGATACATCCTC	57.438	34.615	2.94	0.00	0.00	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.