Multiple sequence alignment - TraesCS7D01G534000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7D01G534000
chr7D
100.000
3775
0
0
1
3775
626907866
626911640
0.000000e+00
6972.0
1
TraesCS7D01G534000
chr7D
84.059
1079
134
17
1090
2146
626946358
626947420
0.000000e+00
1005.0
2
TraesCS7D01G534000
chr7D
85.380
855
109
11
1149
1991
627059172
627060022
0.000000e+00
872.0
3
TraesCS7D01G534000
chr7D
85.444
845
91
14
1149
1983
627071307
627072129
0.000000e+00
850.0
4
TraesCS7D01G534000
chr7D
81.343
938
123
28
1250
2172
626922876
626923776
0.000000e+00
715.0
5
TraesCS7D01G534000
chr7D
78.672
497
74
19
3298
3774
627074663
627075147
6.130000e-78
302.0
6
TraesCS7D01G534000
chr7D
76.179
424
60
20
3291
3682
627079717
627080131
6.440000e-43
185.0
7
TraesCS7D01G534000
chr7D
89.231
65
3
1
2537
2597
626902269
626902333
1.120000e-10
78.7
8
TraesCS7D01G534000
chr7D
88.462
52
6
0
3075
3126
191470783
191470834
3.150000e-06
63.9
9
TraesCS7D01G534000
chr7B
89.190
2692
196
40
1126
3774
727186293
727183654
0.000000e+00
3271.0
10
TraesCS7D01G534000
chr7B
87.611
1461
109
24
2172
3606
727326707
727325293
0.000000e+00
1629.0
11
TraesCS7D01G534000
chr7B
91.531
921
59
9
1114
2028
727392054
727392961
0.000000e+00
1251.0
12
TraesCS7D01G534000
chr7B
89.399
849
64
8
2885
3717
727393879
727394717
0.000000e+00
1046.0
13
TraesCS7D01G534000
chr7B
82.188
1106
157
18
1090
2179
727381764
727380683
0.000000e+00
915.0
14
TraesCS7D01G534000
chr7B
85.699
937
54
30
141
1053
727391166
727392046
0.000000e+00
915.0
15
TraesCS7D01G534000
chr7B
84.752
846
113
11
1149
1983
727654097
727653257
0.000000e+00
833.0
16
TraesCS7D01G534000
chr7B
80.528
1099
156
26
1090
2165
727397680
727398743
0.000000e+00
791.0
17
TraesCS7D01G534000
chr7B
85.714
749
77
12
1128
1866
727328251
727327523
0.000000e+00
763.0
18
TraesCS7D01G534000
chr7B
85.441
522
42
12
140
651
727186993
727186496
2.600000e-141
512.0
19
TraesCS7D01G534000
chr7B
84.861
502
46
13
2086
2584
727392978
727393452
2.640000e-131
479.0
20
TraesCS7D01G534000
chr7B
86.849
403
25
6
1862
2263
727327052
727326677
3.490000e-115
425.0
21
TraesCS7D01G534000
chr7B
79.441
501
75
14
3291
3774
727645807
727645318
2.810000e-86
329.0
22
TraesCS7D01G534000
chr7B
76.223
736
104
32
2170
2897
727409502
727410174
1.310000e-84
324.0
23
TraesCS7D01G534000
chr7B
84.277
318
39
7
2652
2960
727393475
727393790
2.200000e-77
300.0
24
TraesCS7D01G534000
chr7B
81.370
365
40
15
1825
2167
727683475
727683117
4.800000e-69
272.0
25
TraesCS7D01G534000
chr7B
78.886
431
66
12
3332
3745
727650397
727649975
6.220000e-68
268.0
26
TraesCS7D01G534000
chr7B
85.417
192
9
4
904
1081
727186474
727186288
8.330000e-42
182.0
27
TraesCS7D01G534000
chr7B
88.462
156
7
2
904
1048
727328414
727328259
1.080000e-40
178.0
28
TraesCS7D01G534000
chr7B
100.000
55
0
0
3720
3774
727394984
727395038
6.670000e-18
102.0
29
TraesCS7D01G534000
chr7B
97.619
42
1
0
4
45
283661961
283662002
5.230000e-09
73.1
30
TraesCS7D01G534000
chrUn
90.578
1072
65
14
1100
2167
83608218
83609257
0.000000e+00
1387.0
31
TraesCS7D01G534000
chrUn
83.078
981
129
13
1090
2051
83627391
83628353
0.000000e+00
857.0
32
TraesCS7D01G534000
chrUn
85.749
821
77
15
2978
3774
83610002
83610806
0.000000e+00
832.0
33
TraesCS7D01G534000
chrUn
88.950
543
48
12
129
662
83607321
83607860
0.000000e+00
660.0
34
TraesCS7D01G534000
chrUn
86.517
356
26
10
709
1053
83607864
83608208
4.610000e-99
372.0
35
TraesCS7D01G534000
chrUn
83.088
136
17
5
923
1053
83627258
83627392
6.620000e-23
119.0
36
TraesCS7D01G534000
chrUn
95.556
45
2
0
6
50
227963034
227963078
5.230000e-09
73.1
37
TraesCS7D01G534000
chr7A
79.129
1653
250
53
2170
3774
722415806
722417411
0.000000e+00
1053.0
38
TraesCS7D01G534000
chr7A
85.442
838
115
6
1149
1983
722482162
722482995
0.000000e+00
865.0
39
TraesCS7D01G534000
chr7A
82.231
1013
125
32
1167
2167
722414384
722415353
0.000000e+00
822.0
40
TraesCS7D01G534000
chr7A
83.502
691
97
9
1149
1828
722451455
722452139
2.470000e-176
628.0
41
TraesCS7D01G534000
chr7A
77.440
461
78
15
3299
3742
722580142
722580593
6.260000e-63
252.0
42
TraesCS7D01G534000
chr7A
77.698
139
17
12
3340
3470
722591067
722591199
5.230000e-09
73.1
43
TraesCS7D01G534000
chr6B
97.619
42
1
0
4
45
69552852
69552811
5.230000e-09
73.1
44
TraesCS7D01G534000
chr6B
95.455
44
2
0
4
47
450801885
450801928
1.880000e-08
71.3
45
TraesCS7D01G534000
chr3B
95.556
45
2
0
1
45
805611211
805611167
5.230000e-09
73.1
46
TraesCS7D01G534000
chr1D
90.909
55
4
1
1
54
481715009
481715063
5.230000e-09
73.1
47
TraesCS7D01G534000
chr1A
93.750
48
3
0
1
48
255846676
255846723
5.230000e-09
73.1
48
TraesCS7D01G534000
chr2B
93.617
47
3
0
3
49
61584615
61584569
1.880000e-08
71.3
49
TraesCS7D01G534000
chr1B
95.455
44
2
0
2
45
108556747
108556790
1.880000e-08
71.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7D01G534000
chr7D
626907866
626911640
3774
False
6972.000000
6972
100.000000
1
3775
1
chr7D.!!$F3
3774
1
TraesCS7D01G534000
chr7D
626946358
626947420
1062
False
1005.000000
1005
84.059000
1090
2146
1
chr7D.!!$F5
1056
2
TraesCS7D01G534000
chr7D
627059172
627060022
850
False
872.000000
872
85.380000
1149
1991
1
chr7D.!!$F6
842
3
TraesCS7D01G534000
chr7D
626922876
626923776
900
False
715.000000
715
81.343000
1250
2172
1
chr7D.!!$F4
922
4
TraesCS7D01G534000
chr7D
627071307
627075147
3840
False
576.000000
850
82.058000
1149
3774
2
chr7D.!!$F8
2625
5
TraesCS7D01G534000
chr7B
727183654
727186993
3339
True
1321.666667
3271
86.682667
140
3774
3
chr7B.!!$R4
3634
6
TraesCS7D01G534000
chr7B
727380683
727381764
1081
True
915.000000
915
82.188000
1090
2179
1
chr7B.!!$R1
1089
7
TraesCS7D01G534000
chr7B
727325293
727328414
3121
True
748.750000
1629
87.159000
904
3606
4
chr7B.!!$R5
2702
8
TraesCS7D01G534000
chr7B
727391166
727398743
7577
False
697.714286
1251
88.042143
141
3774
7
chr7B.!!$F3
3633
9
TraesCS7D01G534000
chr7B
727649975
727654097
4122
True
550.500000
833
81.819000
1149
3745
2
chr7B.!!$R6
2596
10
TraesCS7D01G534000
chr7B
727409502
727410174
672
False
324.000000
324
76.223000
2170
2897
1
chr7B.!!$F2
727
11
TraesCS7D01G534000
chrUn
83607321
83610806
3485
False
812.750000
1387
87.948500
129
3774
4
chrUn.!!$F2
3645
12
TraesCS7D01G534000
chrUn
83627258
83628353
1095
False
488.000000
857
83.083000
923
2051
2
chrUn.!!$F3
1128
13
TraesCS7D01G534000
chr7A
722414384
722417411
3027
False
937.500000
1053
80.680000
1167
3774
2
chr7A.!!$F5
2607
14
TraesCS7D01G534000
chr7A
722482162
722482995
833
False
865.000000
865
85.442000
1149
1983
1
chr7A.!!$F2
834
15
TraesCS7D01G534000
chr7A
722451455
722452139
684
False
628.000000
628
83.502000
1149
1828
1
chr7A.!!$F1
679
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
706
728
0.037697
GCGTCACACCACAGGTCATA
60.038
55.0
0.0
0.0
31.02
2.15
F
1081
1139
0.516877
TTTTCTCACGCATCTTGCCG
59.483
50.0
0.0
0.0
41.12
5.69
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2065
2641
1.194547
CGCGCTGTGTAGTGACAAATT
59.805
47.619
5.56
0.0
37.31
1.82
R
2960
4979
0.388659
TGTGGCATGTGTTTTGGCTC
59.611
50.000
0.00
0.0
40.12
4.70
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
18
19
1.789116
TGTAAAAATCGACGGGCGC
59.211
52.632
0.00
0.00
40.61
6.53
19
20
1.296360
GTAAAAATCGACGGGCGCG
60.296
57.895
22.69
22.69
40.61
6.86
20
21
2.454464
TAAAAATCGACGGGCGCGG
61.454
57.895
27.52
10.61
40.61
6.46
38
39
4.892379
CAACGCGCGCCATCATGG
62.892
66.667
32.58
12.27
41.55
3.66
42
43
2.280119
GCGCGCCATCATGGTCTA
60.280
61.111
23.24
0.00
40.46
2.59
43
44
2.313172
GCGCGCCATCATGGTCTAG
61.313
63.158
23.24
0.00
40.46
2.43
44
45
1.068083
CGCGCCATCATGGTCTAGT
59.932
57.895
5.31
0.00
40.46
2.57
45
46
1.217585
CGCGCCATCATGGTCTAGTG
61.218
60.000
5.31
0.00
40.46
2.74
46
47
0.179073
GCGCCATCATGGTCTAGTGT
60.179
55.000
5.31
0.00
40.46
3.55
47
48
1.743772
GCGCCATCATGGTCTAGTGTT
60.744
52.381
5.31
0.00
40.46
3.32
48
49
2.205074
CGCCATCATGGTCTAGTGTTC
58.795
52.381
5.31
0.00
40.46
3.18
49
50
2.159043
CGCCATCATGGTCTAGTGTTCT
60.159
50.000
5.31
0.00
40.46
3.01
50
51
3.462021
GCCATCATGGTCTAGTGTTCTC
58.538
50.000
5.31
0.00
40.46
2.87
51
52
3.133721
GCCATCATGGTCTAGTGTTCTCT
59.866
47.826
5.31
0.00
40.46
3.10
52
53
4.342378
GCCATCATGGTCTAGTGTTCTCTA
59.658
45.833
5.31
0.00
40.46
2.43
53
54
5.163405
GCCATCATGGTCTAGTGTTCTCTAA
60.163
44.000
5.31
0.00
40.46
2.10
54
55
6.511416
CCATCATGGTCTAGTGTTCTCTAAG
58.489
44.000
0.00
0.00
31.35
2.18
55
56
6.322456
CCATCATGGTCTAGTGTTCTCTAAGA
59.678
42.308
0.00
0.00
31.35
2.10
56
57
6.761099
TCATGGTCTAGTGTTCTCTAAGAC
57.239
41.667
0.00
0.00
0.00
3.01
57
58
5.652891
TCATGGTCTAGTGTTCTCTAAGACC
59.347
44.000
11.91
11.91
37.94
3.85
58
59
4.008330
TGGTCTAGTGTTCTCTAAGACCG
58.992
47.826
13.49
0.00
38.93
4.79
59
60
3.181498
GGTCTAGTGTTCTCTAAGACCGC
60.181
52.174
4.21
0.00
33.38
5.68
60
61
2.676839
TCTAGTGTTCTCTAAGACCGCG
59.323
50.000
0.00
0.00
29.18
6.46
61
62
0.109226
AGTGTTCTCTAAGACCGCGC
60.109
55.000
0.00
0.00
29.18
6.86
62
63
0.388134
GTGTTCTCTAAGACCGCGCA
60.388
55.000
8.75
0.00
0.00
6.09
63
64
0.388134
TGTTCTCTAAGACCGCGCAC
60.388
55.000
8.75
0.00
0.00
5.34
64
65
1.077089
GTTCTCTAAGACCGCGCACC
61.077
60.000
8.75
0.00
0.00
5.01
65
66
1.248785
TTCTCTAAGACCGCGCACCT
61.249
55.000
8.75
0.00
0.00
4.00
66
67
1.226717
CTCTAAGACCGCGCACCTC
60.227
63.158
8.75
0.00
0.00
3.85
67
68
2.202756
CTAAGACCGCGCACCTCC
60.203
66.667
8.75
0.00
0.00
4.30
68
69
2.992689
TAAGACCGCGCACCTCCA
60.993
61.111
8.75
0.00
0.00
3.86
69
70
2.501223
CTAAGACCGCGCACCTCCAA
62.501
60.000
8.75
0.00
0.00
3.53
70
71
2.775032
TAAGACCGCGCACCTCCAAC
62.775
60.000
8.75
0.00
0.00
3.77
76
77
3.357079
CGCACCTCCAACCTGCAC
61.357
66.667
0.00
0.00
0.00
4.57
77
78
2.985847
GCACCTCCAACCTGCACC
60.986
66.667
0.00
0.00
0.00
5.01
78
79
2.515398
CACCTCCAACCTGCACCA
59.485
61.111
0.00
0.00
0.00
4.17
79
80
1.152777
CACCTCCAACCTGCACCAA
60.153
57.895
0.00
0.00
0.00
3.67
80
81
0.540365
CACCTCCAACCTGCACCAAT
60.540
55.000
0.00
0.00
0.00
3.16
81
82
0.251341
ACCTCCAACCTGCACCAATC
60.251
55.000
0.00
0.00
0.00
2.67
82
83
0.251297
CCTCCAACCTGCACCAATCA
60.251
55.000
0.00
0.00
0.00
2.57
83
84
1.619654
CTCCAACCTGCACCAATCAA
58.380
50.000
0.00
0.00
0.00
2.57
84
85
1.270550
CTCCAACCTGCACCAATCAAC
59.729
52.381
0.00
0.00
0.00
3.18
85
86
0.318120
CCAACCTGCACCAATCAACC
59.682
55.000
0.00
0.00
0.00
3.77
86
87
0.318120
CAACCTGCACCAATCAACCC
59.682
55.000
0.00
0.00
0.00
4.11
87
88
0.188342
AACCTGCACCAATCAACCCT
59.812
50.000
0.00
0.00
0.00
4.34
88
89
0.251341
ACCTGCACCAATCAACCCTC
60.251
55.000
0.00
0.00
0.00
4.30
89
90
0.038744
CCTGCACCAATCAACCCTCT
59.961
55.000
0.00
0.00
0.00
3.69
90
91
1.548582
CCTGCACCAATCAACCCTCTT
60.549
52.381
0.00
0.00
0.00
2.85
91
92
1.815003
CTGCACCAATCAACCCTCTTC
59.185
52.381
0.00
0.00
0.00
2.87
92
93
1.177401
GCACCAATCAACCCTCTTCC
58.823
55.000
0.00
0.00
0.00
3.46
93
94
1.272147
GCACCAATCAACCCTCTTCCT
60.272
52.381
0.00
0.00
0.00
3.36
94
95
2.716217
CACCAATCAACCCTCTTCCTC
58.284
52.381
0.00
0.00
0.00
3.71
95
96
1.279271
ACCAATCAACCCTCTTCCTCG
59.721
52.381
0.00
0.00
0.00
4.63
96
97
1.373570
CAATCAACCCTCTTCCTCGC
58.626
55.000
0.00
0.00
0.00
5.03
97
98
0.253327
AATCAACCCTCTTCCTCGCC
59.747
55.000
0.00
0.00
0.00
5.54
98
99
0.618968
ATCAACCCTCTTCCTCGCCT
60.619
55.000
0.00
0.00
0.00
5.52
99
100
1.219393
CAACCCTCTTCCTCGCCTC
59.781
63.158
0.00
0.00
0.00
4.70
100
101
1.990614
AACCCTCTTCCTCGCCTCC
60.991
63.158
0.00
0.00
0.00
4.30
101
102
3.532155
CCCTCTTCCTCGCCTCCG
61.532
72.222
0.00
0.00
0.00
4.63
102
103
4.214327
CCTCTTCCTCGCCTCCGC
62.214
72.222
0.00
0.00
0.00
5.54
112
113
3.130227
GCCTCCGCGGTTCTATCT
58.870
61.111
27.15
0.00
34.25
1.98
113
114
2.338381
GCCTCCGCGGTTCTATCTA
58.662
57.895
27.15
1.04
34.25
1.98
114
115
0.672342
GCCTCCGCGGTTCTATCTAA
59.328
55.000
27.15
0.17
34.25
2.10
115
116
1.336056
GCCTCCGCGGTTCTATCTAAG
60.336
57.143
27.15
11.53
34.25
2.18
116
117
2.228059
CCTCCGCGGTTCTATCTAAGA
58.772
52.381
27.15
0.00
0.00
2.10
117
118
2.030981
CCTCCGCGGTTCTATCTAAGAC
60.031
54.545
27.15
0.00
32.51
3.01
118
119
1.600957
TCCGCGGTTCTATCTAAGACG
59.399
52.381
27.15
0.00
32.51
4.18
119
120
1.332997
CCGCGGTTCTATCTAAGACGT
59.667
52.381
19.50
0.00
32.51
4.34
120
121
2.601741
CCGCGGTTCTATCTAAGACGTC
60.602
54.545
19.50
7.70
32.51
4.34
121
122
2.637595
GCGGTTCTATCTAAGACGTCG
58.362
52.381
10.46
0.00
32.51
5.12
122
123
2.031437
GCGGTTCTATCTAAGACGTCGT
59.969
50.000
10.46
9.92
32.51
4.34
123
124
3.246226
GCGGTTCTATCTAAGACGTCGTA
59.754
47.826
10.46
10.64
32.51
3.43
124
125
4.608000
GCGGTTCTATCTAAGACGTCGTAG
60.608
50.000
26.54
26.54
32.51
3.51
125
126
4.608000
CGGTTCTATCTAAGACGTCGTAGC
60.608
50.000
27.32
15.33
32.51
3.58
126
127
4.511082
GGTTCTATCTAAGACGTCGTAGCT
59.489
45.833
27.32
22.08
32.51
3.32
127
128
5.333263
GGTTCTATCTAAGACGTCGTAGCTC
60.333
48.000
27.32
15.23
32.51
4.09
135
136
1.648756
CGTCGTAGCTCTCTTCGCG
60.649
63.158
0.00
0.00
33.83
5.87
143
144
3.916392
CTCTCTTCGCGGGCGTTGT
62.916
63.158
13.21
0.00
40.74
3.32
154
156
2.188161
GGCGTTGTTCCCGTTTCCA
61.188
57.895
0.00
0.00
0.00
3.53
184
186
4.408182
AATAATCAAGTGACGGGAGAGG
57.592
45.455
0.00
0.00
0.00
3.69
197
199
1.073923
GGGAGAGGAACTTTCAGCCAA
59.926
52.381
0.00
0.00
41.85
4.52
218
221
5.508825
CCAACTAGGTTTAGCAAACATGCAA
60.509
40.000
11.93
0.00
43.15
4.08
239
247
1.171549
TCATGCATGTGGTGTGCGTT
61.172
50.000
25.43
0.00
45.37
4.84
262
272
0.389948
CCTCTCCCTGAACGAAACGG
60.390
60.000
0.00
0.00
0.00
4.44
267
277
0.317519
CCCTGAACGAAACGGCAAAC
60.318
55.000
0.00
0.00
0.00
2.93
358
368
1.524482
GAGTGCTCATCCCTCCCAC
59.476
63.158
0.00
0.00
0.00
4.61
420
433
3.063045
GTGCCTACGTACACCAAAATAGC
59.937
47.826
5.27
0.00
0.00
2.97
557
579
2.359848
CCAACGGTAGATCGTGGATGTA
59.640
50.000
0.00
0.00
43.07
2.29
586
608
0.899720
CTGCATTGTCCTGCCCAATT
59.100
50.000
0.00
0.00
41.58
2.32
616
638
8.727910
CATCTTCCATTACTCCAATCATATGTG
58.272
37.037
1.90
0.00
0.00
3.21
682
704
2.888513
TCGAGTACGAGCTGTTGTAC
57.111
50.000
10.90
10.90
43.81
2.90
683
705
1.127397
TCGAGTACGAGCTGTTGTACG
59.873
52.381
12.35
2.46
45.23
3.67
684
706
1.136141
CGAGTACGAGCTGTTGTACGT
60.136
52.381
12.35
7.72
45.23
3.57
706
728
0.037697
GCGTCACACCACAGGTCATA
60.038
55.000
0.00
0.00
31.02
2.15
723
749
8.144478
ACAGGTCATATATACACACATCTTGAC
58.856
37.037
0.00
0.00
0.00
3.18
730
756
0.943835
CACACATCTTGACCGTGCGA
60.944
55.000
0.00
0.00
33.89
5.10
769
795
1.758514
CCTGGGCTAGCTCCTCGAA
60.759
63.158
13.26
0.00
0.00
3.71
796
822
5.487433
CAACATGACACCTAATCCACACTA
58.513
41.667
0.00
0.00
0.00
2.74
798
824
3.861276
TGACACCTAATCCACACTACG
57.139
47.619
0.00
0.00
0.00
3.51
828
860
2.124570
ATGCACGGAGATGGTGGC
60.125
61.111
0.00
0.00
35.94
5.01
835
867
2.894387
GAGATGGTGGCTCGCTGC
60.894
66.667
0.00
0.00
41.94
5.25
846
878
3.599792
CTCGCTGCCGTTGCTTTGG
62.600
63.158
0.00
0.00
38.71
3.28
872
904
5.521010
ACGTACGTTGAGATTTGACTTTGAA
59.479
36.000
16.72
0.00
0.00
2.69
878
910
5.437289
TGAGATTTGACTTTGAACGCATT
57.563
34.783
0.00
0.00
0.00
3.56
879
911
5.214417
TGAGATTTGACTTTGAACGCATTG
58.786
37.500
0.00
0.00
0.00
2.82
902
941
4.475135
GCGGCAACCTCCTCCTCC
62.475
72.222
0.00
0.00
0.00
4.30
1053
1111
6.551975
AGTTCTCACATCTCATCTCATCTCAT
59.448
38.462
0.00
0.00
0.00
2.90
1054
1112
6.578163
TCTCACATCTCATCTCATCTCATC
57.422
41.667
0.00
0.00
0.00
2.92
1055
1113
6.308566
TCTCACATCTCATCTCATCTCATCT
58.691
40.000
0.00
0.00
0.00
2.90
1056
1114
6.431852
TCTCACATCTCATCTCATCTCATCTC
59.568
42.308
0.00
0.00
0.00
2.75
1057
1115
6.069331
TCACATCTCATCTCATCTCATCTCA
58.931
40.000
0.00
0.00
0.00
3.27
1063
1121
6.834969
TCTCATCTCATCTCATCTCAGTTCTT
59.165
38.462
0.00
0.00
0.00
2.52
1069
1127
7.178097
TCTCATCTCATCTCAGTTCTTTTCTCA
59.822
37.037
0.00
0.00
0.00
3.27
1075
1133
3.990469
TCTCAGTTCTTTTCTCACGCATC
59.010
43.478
0.00
0.00
0.00
3.91
1076
1134
3.993081
CTCAGTTCTTTTCTCACGCATCT
59.007
43.478
0.00
0.00
0.00
2.90
1077
1135
4.380531
TCAGTTCTTTTCTCACGCATCTT
58.619
39.130
0.00
0.00
0.00
2.40
1078
1136
4.212004
TCAGTTCTTTTCTCACGCATCTTG
59.788
41.667
0.00
0.00
0.00
3.02
1079
1137
3.058639
AGTTCTTTTCTCACGCATCTTGC
60.059
43.478
0.00
0.00
40.69
4.01
1080
1138
1.806542
TCTTTTCTCACGCATCTTGCC
59.193
47.619
0.00
0.00
41.12
4.52
1081
1139
0.516877
TTTTCTCACGCATCTTGCCG
59.483
50.000
0.00
0.00
41.12
5.69
1082
1140
1.911293
TTTCTCACGCATCTTGCCGC
61.911
55.000
0.00
0.00
41.12
6.53
1083
1141
3.120385
CTCACGCATCTTGCCGCA
61.120
61.111
0.00
0.00
41.12
5.69
1084
1142
3.372676
CTCACGCATCTTGCCGCAC
62.373
63.158
0.00
0.00
41.12
5.34
1085
1143
4.465512
CACGCATCTTGCCGCACC
62.466
66.667
0.00
0.00
41.12
5.01
1086
1144
4.704833
ACGCATCTTGCCGCACCT
62.705
61.111
0.00
0.00
41.12
4.00
1087
1145
2.511373
CGCATCTTGCCGCACCTA
60.511
61.111
0.00
0.00
41.12
3.08
1088
1146
2.813179
CGCATCTTGCCGCACCTAC
61.813
63.158
0.00
0.00
41.12
3.18
1469
1541
4.214327
GCCTTCCTCCTCCTCGCG
62.214
72.222
0.00
0.00
0.00
5.87
1610
1683
2.202676
GCAGAGAAGGACCTCGCG
60.203
66.667
0.00
0.00
38.19
5.87
1780
1853
2.261671
GTCCATGTCGTCTGCGGT
59.738
61.111
0.00
0.00
38.89
5.68
2065
2641
7.973388
GCTAAACCATGTATGTTTTGCTGATTA
59.027
33.333
18.04
0.00
36.46
1.75
2082
2659
6.024049
GCTGATTAATTTGTCACTACACAGC
58.976
40.000
0.00
0.00
38.07
4.40
2084
2661
2.969443
AATTTGTCACTACACAGCGC
57.031
45.000
0.00
0.00
34.61
5.92
2187
3330
8.874156
TGAATAATACTCAGAGCAATATGTCCT
58.126
33.333
0.00
0.00
0.00
3.85
2312
3517
6.524101
ACCATAATCGCCAAATTAACAAGT
57.476
33.333
0.00
0.00
0.00
3.16
2320
3531
8.880878
ATCGCCAAATTAACAAGTTTACTTTT
57.119
26.923
0.00
0.00
33.11
2.27
2321
3532
8.121167
TCGCCAAATTAACAAGTTTACTTTTG
57.879
30.769
0.00
0.00
33.11
2.44
2362
3574
3.592059
GATCCTAACTTACGCACACCAA
58.408
45.455
0.00
0.00
0.00
3.67
2364
3576
4.010667
TCCTAACTTACGCACACCAATT
57.989
40.909
0.00
0.00
0.00
2.32
2378
3597
5.408299
GCACACCAATTTTCTCCCATAAAAC
59.592
40.000
0.00
0.00
0.00
2.43
2597
3830
0.807496
CCAAAGCAAGCCAGTCTAGC
59.193
55.000
0.00
0.00
0.00
3.42
2600
3833
0.676151
AAGCAAGCCAGTCTAGCAGC
60.676
55.000
0.00
0.00
34.82
5.25
2602
3835
0.176680
GCAAGCCAGTCTAGCAGCTA
59.823
55.000
1.13
1.13
34.49
3.32
2603
3836
1.805871
GCAAGCCAGTCTAGCAGCTAG
60.806
57.143
21.97
21.97
34.49
3.42
2630
3863
5.625656
GCTCTAGTCATGCTAGGTTTCTTGT
60.626
44.000
18.22
0.00
45.55
3.16
2650
3883
7.441017
TCTTGTTTTTGTATGGAGGGAAATTG
58.559
34.615
0.00
0.00
0.00
2.32
2724
4330
6.697455
ACTGATCATATTGTACGTGTGATGAC
59.303
38.462
12.77
3.63
29.14
3.06
2762
4606
9.345517
CATTGTCCATAACACAACTGAAATTAG
57.654
33.333
0.00
0.00
37.70
1.73
2776
4620
6.314917
ACTGAAATTAGGACAAGGTTCCAAT
58.685
36.000
0.00
0.00
38.25
3.16
2777
4628
7.466804
ACTGAAATTAGGACAAGGTTCCAATA
58.533
34.615
0.00
0.00
38.25
1.90
2831
4683
0.952010
TTGCCCGACTTTAGCGAACC
60.952
55.000
0.00
0.00
0.00
3.62
2832
4684
2.104859
GCCCGACTTTAGCGAACCC
61.105
63.158
0.00
0.00
0.00
4.11
2840
4692
0.529378
TTTAGCGAACCCGAGACCTC
59.471
55.000
0.00
0.00
38.22
3.85
2848
4700
5.174120
CGAACCCGAGACCTCAAGGTTTA
62.174
52.174
17.39
0.00
42.48
2.01
2909
4764
6.603201
ACTTGAAACAAATTCTCAGAAGGACA
59.397
34.615
0.00
0.00
38.92
4.02
2930
4949
1.462731
GCTCAATGCCAACACACCCA
61.463
55.000
0.00
0.00
35.15
4.51
2941
4960
1.611519
ACACACCCAATACAAACCCG
58.388
50.000
0.00
0.00
0.00
5.28
2960
4979
2.421424
CCGAAAAGATCCTTGGCTCAAG
59.579
50.000
7.69
7.69
40.75
3.02
3069
5353
0.462047
CGCCGGAGCTTTTGGTAGAT
60.462
55.000
5.05
0.00
36.60
1.98
3117
5401
4.397417
GGTCTTGCTGAGTTGCTTGAATAT
59.603
41.667
0.00
0.00
0.00
1.28
3145
5429
8.531982
TGTAAGAACATAGTCATCTTGTAGCTT
58.468
33.333
0.00
0.00
35.22
3.74
3167
5451
3.753272
TGTCCAGCAGCAGAATTCTTAAC
59.247
43.478
4.86
0.00
0.00
2.01
3199
6150
6.097554
TCTCTAGTTGATGAGTGAAGATTCCC
59.902
42.308
0.00
0.00
0.00
3.97
3200
6151
4.916041
AGTTGATGAGTGAAGATTCCCA
57.084
40.909
0.00
0.00
0.00
4.37
3255
6214
4.141274
CCACCCATCACATAATACCTCCAA
60.141
45.833
0.00
0.00
0.00
3.53
3283
6242
4.624452
GGATAGAACTTTAGTTGCGTCGTT
59.376
41.667
0.00
0.00
38.56
3.85
3293
6271
2.202440
GCGTCGTTGCTAGCGAGA
60.202
61.111
10.77
6.37
39.14
4.04
3301
6279
3.057736
TCGTTGCTAGCGAGAACTAAGTT
60.058
43.478
10.77
0.00
34.11
2.66
3408
6398
4.913335
TCTATTGACTGTCCATACGTCC
57.087
45.455
5.17
0.00
32.02
4.79
3431
6421
0.109723
TGCCCTAATATTGTCGGCCC
59.890
55.000
15.62
0.00
38.92
5.80
3606
6619
1.804601
AGCGTTTTAGTGGCAGTACC
58.195
50.000
0.44
0.00
39.84
3.34
3608
6621
1.463444
GCGTTTTAGTGGCAGTACCTG
59.537
52.381
0.44
0.00
40.22
4.00
3774
7080
7.989741
ACTTGATCAAGCTAAGCATGTACTATT
59.010
33.333
30.95
6.43
41.99
1.73
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
1.789116
GCGCCCGTCGATTTTTACA
59.211
52.632
0.00
0.00
41.67
2.41
1
2
1.296360
CGCGCCCGTCGATTTTTAC
60.296
57.895
0.00
0.00
41.67
2.01
2
3
2.454464
CCGCGCCCGTCGATTTTTA
61.454
57.895
0.00
0.00
41.67
1.52
3
4
3.795342
CCGCGCCCGTCGATTTTT
61.795
61.111
0.00
0.00
41.67
1.94
21
22
4.892379
CCATGATGGCGCGCGTTG
62.892
66.667
32.35
16.50
0.00
4.10
25
26
2.280119
TAGACCATGATGGCGCGC
60.280
61.111
25.94
25.94
42.67
6.86
26
27
1.068083
ACTAGACCATGATGGCGCG
59.932
57.895
12.25
0.00
42.67
6.86
27
28
0.179073
ACACTAGACCATGATGGCGC
60.179
55.000
12.25
0.00
42.67
6.53
28
29
2.159043
AGAACACTAGACCATGATGGCG
60.159
50.000
12.25
0.18
42.67
5.69
29
30
3.133721
AGAGAACACTAGACCATGATGGC
59.866
47.826
12.25
4.53
42.67
4.40
30
31
6.322456
TCTTAGAGAACACTAGACCATGATGG
59.678
42.308
10.53
10.53
45.02
3.51
31
32
7.199766
GTCTTAGAGAACACTAGACCATGATG
58.800
42.308
0.00
0.00
0.00
3.07
32
33
6.322712
GGTCTTAGAGAACACTAGACCATGAT
59.677
42.308
13.22
0.00
38.69
2.45
33
34
5.652891
GGTCTTAGAGAACACTAGACCATGA
59.347
44.000
13.22
0.00
38.69
3.07
34
35
5.449314
CGGTCTTAGAGAACACTAGACCATG
60.449
48.000
17.01
1.51
38.72
3.66
35
36
4.641094
CGGTCTTAGAGAACACTAGACCAT
59.359
45.833
17.01
0.00
38.72
3.55
36
37
4.008330
CGGTCTTAGAGAACACTAGACCA
58.992
47.826
17.01
0.00
38.72
4.02
37
38
3.181498
GCGGTCTTAGAGAACACTAGACC
60.181
52.174
9.06
9.06
37.34
3.85
38
39
3.485546
CGCGGTCTTAGAGAACACTAGAC
60.486
52.174
0.00
0.00
29.18
2.59
39
40
2.676839
CGCGGTCTTAGAGAACACTAGA
59.323
50.000
0.00
0.00
29.18
2.43
40
41
2.791849
GCGCGGTCTTAGAGAACACTAG
60.792
54.545
8.83
0.00
29.18
2.57
41
42
1.131883
GCGCGGTCTTAGAGAACACTA
59.868
52.381
8.83
0.00
29.18
2.74
42
43
0.109226
GCGCGGTCTTAGAGAACACT
60.109
55.000
8.83
0.00
29.18
3.55
43
44
0.388134
TGCGCGGTCTTAGAGAACAC
60.388
55.000
8.83
0.00
29.18
3.32
44
45
0.388134
GTGCGCGGTCTTAGAGAACA
60.388
55.000
8.83
0.00
29.18
3.18
45
46
1.077089
GGTGCGCGGTCTTAGAGAAC
61.077
60.000
8.83
0.00
0.00
3.01
46
47
1.214589
GGTGCGCGGTCTTAGAGAA
59.785
57.895
8.83
0.00
0.00
2.87
47
48
1.654954
GAGGTGCGCGGTCTTAGAGA
61.655
60.000
8.83
0.00
0.00
3.10
48
49
1.226717
GAGGTGCGCGGTCTTAGAG
60.227
63.158
8.83
0.00
0.00
2.43
49
50
2.707849
GGAGGTGCGCGGTCTTAGA
61.708
63.158
8.83
0.00
0.00
2.10
50
51
2.202756
GGAGGTGCGCGGTCTTAG
60.203
66.667
8.83
0.00
0.00
2.18
51
52
2.575893
TTGGAGGTGCGCGGTCTTA
61.576
57.895
8.83
0.00
0.00
2.10
52
53
3.936203
TTGGAGGTGCGCGGTCTT
61.936
61.111
8.83
0.00
0.00
3.01
53
54
4.681978
GTTGGAGGTGCGCGGTCT
62.682
66.667
8.83
0.00
0.00
3.85
59
60
3.357079
GTGCAGGTTGGAGGTGCG
61.357
66.667
0.00
0.00
40.23
5.34
60
61
2.985847
GGTGCAGGTTGGAGGTGC
60.986
66.667
0.00
0.00
37.73
5.01
61
62
0.540365
ATTGGTGCAGGTTGGAGGTG
60.540
55.000
0.00
0.00
0.00
4.00
62
63
0.251341
GATTGGTGCAGGTTGGAGGT
60.251
55.000
0.00
0.00
0.00
3.85
63
64
0.251297
TGATTGGTGCAGGTTGGAGG
60.251
55.000
0.00
0.00
0.00
4.30
64
65
1.270550
GTTGATTGGTGCAGGTTGGAG
59.729
52.381
0.00
0.00
0.00
3.86
65
66
1.327303
GTTGATTGGTGCAGGTTGGA
58.673
50.000
0.00
0.00
0.00
3.53
66
67
0.318120
GGTTGATTGGTGCAGGTTGG
59.682
55.000
0.00
0.00
0.00
3.77
67
68
0.318120
GGGTTGATTGGTGCAGGTTG
59.682
55.000
0.00
0.00
0.00
3.77
68
69
0.188342
AGGGTTGATTGGTGCAGGTT
59.812
50.000
0.00
0.00
0.00
3.50
69
70
0.251341
GAGGGTTGATTGGTGCAGGT
60.251
55.000
0.00
0.00
0.00
4.00
70
71
0.038744
AGAGGGTTGATTGGTGCAGG
59.961
55.000
0.00
0.00
0.00
4.85
71
72
1.815003
GAAGAGGGTTGATTGGTGCAG
59.185
52.381
0.00
0.00
0.00
4.41
72
73
1.547675
GGAAGAGGGTTGATTGGTGCA
60.548
52.381
0.00
0.00
0.00
4.57
73
74
1.177401
GGAAGAGGGTTGATTGGTGC
58.823
55.000
0.00
0.00
0.00
5.01
74
75
2.716217
GAGGAAGAGGGTTGATTGGTG
58.284
52.381
0.00
0.00
0.00
4.17
75
76
1.279271
CGAGGAAGAGGGTTGATTGGT
59.721
52.381
0.00
0.00
0.00
3.67
76
77
2.014068
GCGAGGAAGAGGGTTGATTGG
61.014
57.143
0.00
0.00
0.00
3.16
77
78
1.373570
GCGAGGAAGAGGGTTGATTG
58.626
55.000
0.00
0.00
0.00
2.67
78
79
0.253327
GGCGAGGAAGAGGGTTGATT
59.747
55.000
0.00
0.00
0.00
2.57
79
80
0.618968
AGGCGAGGAAGAGGGTTGAT
60.619
55.000
0.00
0.00
0.00
2.57
80
81
1.229209
AGGCGAGGAAGAGGGTTGA
60.229
57.895
0.00
0.00
0.00
3.18
81
82
1.219393
GAGGCGAGGAAGAGGGTTG
59.781
63.158
0.00
0.00
0.00
3.77
82
83
1.990614
GGAGGCGAGGAAGAGGGTT
60.991
63.158
0.00
0.00
0.00
4.11
83
84
2.364448
GGAGGCGAGGAAGAGGGT
60.364
66.667
0.00
0.00
0.00
4.34
84
85
3.532155
CGGAGGCGAGGAAGAGGG
61.532
72.222
0.00
0.00
0.00
4.30
85
86
4.214327
GCGGAGGCGAGGAAGAGG
62.214
72.222
0.00
0.00
0.00
3.69
95
96
0.672342
TTAGATAGAACCGCGGAGGC
59.328
55.000
35.90
19.96
46.52
4.70
97
98
2.349627
CGTCTTAGATAGAACCGCGGAG
60.350
54.545
35.90
15.71
33.81
4.63
98
99
1.600957
CGTCTTAGATAGAACCGCGGA
59.399
52.381
35.90
10.13
33.81
5.54
99
100
1.332997
ACGTCTTAGATAGAACCGCGG
59.667
52.381
26.86
26.86
33.81
6.46
100
101
2.637595
GACGTCTTAGATAGAACCGCG
58.362
52.381
8.70
0.00
33.81
6.46
101
102
2.031437
ACGACGTCTTAGATAGAACCGC
59.969
50.000
14.70
0.00
33.81
5.68
102
103
3.940657
ACGACGTCTTAGATAGAACCG
57.059
47.619
14.70
0.00
33.81
4.44
103
104
4.511082
AGCTACGACGTCTTAGATAGAACC
59.489
45.833
27.74
11.51
33.81
3.62
104
105
5.463061
AGAGCTACGACGTCTTAGATAGAAC
59.537
44.000
27.74
12.83
33.81
3.01
105
106
5.599732
AGAGCTACGACGTCTTAGATAGAA
58.400
41.667
27.74
0.00
33.81
2.10
106
107
5.009911
AGAGAGCTACGACGTCTTAGATAGA
59.990
44.000
27.74
0.00
0.00
1.98
107
108
5.224888
AGAGAGCTACGACGTCTTAGATAG
58.775
45.833
27.74
15.21
0.00
2.08
108
109
5.199024
AGAGAGCTACGACGTCTTAGATA
57.801
43.478
27.74
6.70
0.00
1.98
109
110
4.062677
AGAGAGCTACGACGTCTTAGAT
57.937
45.455
27.74
23.39
0.00
1.98
110
111
3.523606
AGAGAGCTACGACGTCTTAGA
57.476
47.619
27.74
4.60
0.00
2.10
111
112
3.301963
CGAAGAGAGCTACGACGTCTTAG
60.302
52.174
21.35
21.35
0.00
2.18
112
113
2.602211
CGAAGAGAGCTACGACGTCTTA
59.398
50.000
14.70
7.86
0.00
2.10
113
114
1.394227
CGAAGAGAGCTACGACGTCTT
59.606
52.381
14.70
6.93
0.00
3.01
114
115
1.000884
CGAAGAGAGCTACGACGTCT
58.999
55.000
14.70
0.00
0.00
4.18
115
116
0.586995
GCGAAGAGAGCTACGACGTC
60.587
60.000
2.43
5.18
0.00
4.34
116
117
1.424635
GCGAAGAGAGCTACGACGT
59.575
57.895
5.52
5.52
0.00
4.34
117
118
1.648756
CGCGAAGAGAGCTACGACG
60.649
63.158
0.00
0.00
0.00
5.12
118
119
1.297745
CCGCGAAGAGAGCTACGAC
60.298
63.158
8.23
0.00
0.00
4.34
119
120
2.470362
CCCGCGAAGAGAGCTACGA
61.470
63.158
8.23
0.00
0.00
3.43
120
121
2.024871
CCCGCGAAGAGAGCTACG
59.975
66.667
8.23
0.00
0.00
3.51
121
122
2.278923
GCCCGCGAAGAGAGCTAC
60.279
66.667
8.23
0.00
0.00
3.58
122
123
3.889044
CGCCCGCGAAGAGAGCTA
61.889
66.667
8.23
0.00
42.83
3.32
125
126
3.181967
CAACGCCCGCGAAGAGAG
61.182
66.667
17.16
0.00
42.83
3.20
126
127
3.509137
AACAACGCCCGCGAAGAGA
62.509
57.895
17.16
0.00
42.83
3.10
127
128
3.011760
GAACAACGCCCGCGAAGAG
62.012
63.158
17.16
2.40
42.83
2.85
135
136
2.640989
GAAACGGGAACAACGCCC
59.359
61.111
0.00
0.00
42.41
6.13
143
144
0.250553
AACGATGCTGGAAACGGGAA
60.251
50.000
0.00
0.00
41.93
3.97
154
156
5.234329
CCGTCACTTGATTATTAACGATGCT
59.766
40.000
0.00
0.00
0.00
3.79
184
186
5.334957
GCTAAACCTAGTTGGCTGAAAGTTC
60.335
44.000
0.00
0.00
40.22
3.01
218
221
1.579964
CGCACACCACATGCATGAGT
61.580
55.000
32.75
24.21
43.57
3.41
239
247
3.473625
GTTTCGTTCAGGGAGAGGAAAA
58.526
45.455
0.00
0.00
34.44
2.29
262
272
5.743872
GGGAGACATGAAATATTTCGTTTGC
59.256
40.000
18.33
12.76
40.01
3.68
267
277
6.683974
AGTTGGGAGACATGAAATATTTCG
57.316
37.500
20.45
11.43
40.01
3.46
269
279
6.211184
TGCAAGTTGGGAGACATGAAATATTT
59.789
34.615
4.75
0.00
0.00
1.40
273
283
3.499338
TGCAAGTTGGGAGACATGAAAT
58.501
40.909
4.75
0.00
0.00
2.17
275
285
2.622942
GTTGCAAGTTGGGAGACATGAA
59.377
45.455
0.00
0.00
0.00
2.57
557
579
1.841663
GACAATGCAGCGGAACACGT
61.842
55.000
0.00
0.00
46.52
4.49
586
608
7.675161
TGATTGGAGTAATGGAAGATGACTA
57.325
36.000
0.00
0.00
0.00
2.59
643
665
1.827969
AGCTAGACTGGCACTGTTAGG
59.172
52.381
13.78
0.00
41.64
2.69
647
669
0.609406
TCGAGCTAGACTGGCACTGT
60.609
55.000
13.78
0.00
45.09
3.55
695
717
6.997655
AGATGTGTGTATATATGACCTGTGG
58.002
40.000
0.00
0.00
0.00
4.17
706
728
4.119862
GCACGGTCAAGATGTGTGTATAT
58.880
43.478
7.09
0.00
36.04
0.86
730
756
1.898094
TTGGACATGCTTGCACGCT
60.898
52.632
16.80
0.00
0.00
5.07
755
781
2.798364
GGGGTTCGAGGAGCTAGCC
61.798
68.421
12.13
2.59
0.00
3.93
769
795
2.025321
GGATTAGGTGTCATGTTGGGGT
60.025
50.000
0.00
0.00
0.00
4.95
828
860
2.127118
CAAAGCAACGGCAGCGAG
60.127
61.111
0.00
0.00
44.61
5.03
846
878
2.729882
AGTCAAATCTCAACGTACGTGC
59.270
45.455
23.57
0.00
0.00
5.34
847
879
4.966850
AAGTCAAATCTCAACGTACGTG
57.033
40.909
23.57
15.75
0.00
4.49
848
880
5.045215
TCAAAGTCAAATCTCAACGTACGT
58.955
37.500
16.72
16.72
0.00
3.57
849
881
5.570262
TCAAAGTCAAATCTCAACGTACG
57.430
39.130
15.01
15.01
0.00
3.67
884
916
4.821589
GAGGAGGAGGTTGCCGCG
62.822
72.222
0.00
0.00
0.00
6.46
885
917
4.475135
GGAGGAGGAGGTTGCCGC
62.475
72.222
0.00
0.00
0.00
6.53
985
1031
3.589951
ATATGCAATGCAAGGAGGAGT
57.410
42.857
13.45
0.00
43.62
3.85
1053
1111
3.452755
TGCGTGAGAAAAGAACTGAGA
57.547
42.857
0.00
0.00
0.00
3.27
1054
1112
3.993081
AGATGCGTGAGAAAAGAACTGAG
59.007
43.478
0.00
0.00
0.00
3.35
1055
1113
3.995199
AGATGCGTGAGAAAAGAACTGA
58.005
40.909
0.00
0.00
0.00
3.41
1056
1114
4.461405
CAAGATGCGTGAGAAAAGAACTG
58.539
43.478
0.00
0.00
0.00
3.16
1057
1115
3.058639
GCAAGATGCGTGAGAAAAGAACT
60.059
43.478
0.00
0.00
31.71
3.01
1063
1121
1.911293
GCGGCAAGATGCGTGAGAAA
61.911
55.000
0.00
0.00
46.21
2.52
1069
1127
3.309436
TAGGTGCGGCAAGATGCGT
62.309
57.895
3.23
0.00
46.21
5.24
1075
1133
3.127533
GCTGGTAGGTGCGGCAAG
61.128
66.667
3.23
0.00
0.00
4.01
1076
1134
3.483788
TTGCTGGTAGGTGCGGCAA
62.484
57.895
3.23
0.00
39.99
4.52
1077
1135
3.947459
TTGCTGGTAGGTGCGGCA
61.947
61.111
0.00
0.00
0.00
5.69
1078
1136
3.431725
GTTGCTGGTAGGTGCGGC
61.432
66.667
0.00
0.00
0.00
6.53
1079
1137
1.169661
TTTGTTGCTGGTAGGTGCGG
61.170
55.000
0.00
0.00
0.00
5.69
1080
1138
0.040425
GTTTGTTGCTGGTAGGTGCG
60.040
55.000
0.00
0.00
0.00
5.34
1081
1139
1.028905
TGTTTGTTGCTGGTAGGTGC
58.971
50.000
0.00
0.00
0.00
5.01
1082
1140
2.020720
TGTGTTTGTTGCTGGTAGGTG
58.979
47.619
0.00
0.00
0.00
4.00
1083
1141
2.428544
TGTGTTTGTTGCTGGTAGGT
57.571
45.000
0.00
0.00
0.00
3.08
1084
1142
3.380004
TCTTTGTGTTTGTTGCTGGTAGG
59.620
43.478
0.00
0.00
0.00
3.18
1085
1143
4.498009
CCTCTTTGTGTTTGTTGCTGGTAG
60.498
45.833
0.00
0.00
0.00
3.18
1086
1144
3.380004
CCTCTTTGTGTTTGTTGCTGGTA
59.620
43.478
0.00
0.00
0.00
3.25
1087
1145
2.166254
CCTCTTTGTGTTTGTTGCTGGT
59.834
45.455
0.00
0.00
0.00
4.00
1088
1146
2.426738
TCCTCTTTGTGTTTGTTGCTGG
59.573
45.455
0.00
0.00
0.00
4.85
1154
1213
4.324991
GACCGGCCGAAGTTGGGT
62.325
66.667
30.73
14.54
0.00
4.51
1580
1653
3.306595
CTCTGCTCTGCGCTGGGAA
62.307
63.158
19.39
6.49
40.21
3.97
2043
2615
9.723601
AAATTAATCAGCAAAACATACATGGTT
57.276
25.926
0.00
0.00
39.91
3.67
2053
2625
8.690840
GTGTAGTGACAAATTAATCAGCAAAAC
58.309
33.333
0.00
0.00
37.31
2.43
2065
2641
1.194547
CGCGCTGTGTAGTGACAAATT
59.805
47.619
5.56
0.00
37.31
1.82
2123
2701
5.009010
AGGTCTGAACAAGTGTAGCAAAATG
59.991
40.000
0.00
0.00
0.00
2.32
2187
3330
2.146342
GCAAGTGCTTCACAAGAGCTA
58.854
47.619
0.00
0.00
36.74
3.32
2290
3495
7.826260
AAACTTGTTAATTTGGCGATTATGG
57.174
32.000
0.00
0.00
0.00
2.74
2312
3517
8.842358
AACGACTGAATAGATCCAAAAGTAAA
57.158
30.769
0.00
0.00
0.00
2.01
2349
3561
3.365969
GGGAGAAAATTGGTGTGCGTAAG
60.366
47.826
0.00
0.00
43.44
2.34
2362
3574
5.773176
ACTGTTCGGTTTTATGGGAGAAAAT
59.227
36.000
0.00
0.00
0.00
1.82
2364
3576
4.721132
ACTGTTCGGTTTTATGGGAGAAA
58.279
39.130
0.00
0.00
0.00
2.52
2378
3597
6.307800
CCAAGTTGCATATTTTAACTGTTCGG
59.692
38.462
0.00
0.00
35.06
4.30
2630
3863
5.604650
ACCACAATTTCCCTCCATACAAAAA
59.395
36.000
0.00
0.00
0.00
1.94
2724
4330
1.247567
GGACAATGTTCACCACAGGG
58.752
55.000
0.00
0.00
39.40
4.45
2840
4692
6.400568
TCGAACTAGGGTATGTTAAACCTTG
58.599
40.000
0.00
0.00
37.18
3.61
2848
4700
6.732896
ATTCTCATCGAACTAGGGTATGTT
57.267
37.500
0.00
0.00
33.72
2.71
2897
4752
2.015456
TTGAGCCTGTCCTTCTGAGA
57.985
50.000
0.00
0.00
0.00
3.27
2930
4949
5.185056
CCAAGGATCTTTTCGGGTTTGTATT
59.815
40.000
0.00
0.00
0.00
1.89
2941
4960
3.128415
GCTCTTGAGCCAAGGATCTTTTC
59.872
47.826
11.24
0.00
41.33
2.29
2960
4979
0.388659
TGTGGCATGTGTTTTGGCTC
59.611
50.000
0.00
0.00
40.12
4.70
3034
5318
4.251760
CGACACGCTTCAGCTCTT
57.748
55.556
0.00
0.00
39.32
2.85
3051
5335
1.017387
CATCTACCAAAAGCTCCGGC
58.983
55.000
0.00
0.00
39.06
6.13
3052
5336
2.691409
TCATCTACCAAAAGCTCCGG
57.309
50.000
0.00
0.00
0.00
5.14
3069
5353
6.168389
CAGGAATCATCGACCATTGATATCA
58.832
40.000
0.00
0.00
32.40
2.15
3117
5401
9.151471
GCTACAAGATGACTATGTTCTTACAAA
57.849
33.333
0.00
0.00
37.91
2.83
3145
5429
2.574006
AAGAATTCTGCTGCTGGACA
57.426
45.000
9.17
0.00
0.00
4.02
3167
5451
9.823098
CTTCACTCATCAACTAGAGAATTTTTG
57.177
33.333
0.00
0.00
35.83
2.44
3199
6150
2.823829
GCGTTGGGAGCGGCTATTG
61.824
63.158
0.60
0.00
0.00
1.90
3200
6151
2.513897
GCGTTGGGAGCGGCTATT
60.514
61.111
0.60
0.00
0.00
1.73
3229
6187
4.307259
AGGTATTATGTGATGGGTGGTCT
58.693
43.478
0.00
0.00
0.00
3.85
3230
6188
4.505039
GGAGGTATTATGTGATGGGTGGTC
60.505
50.000
0.00
0.00
0.00
4.02
3231
6189
3.394606
GGAGGTATTATGTGATGGGTGGT
59.605
47.826
0.00
0.00
0.00
4.16
3233
6192
4.705110
TGGAGGTATTATGTGATGGGTG
57.295
45.455
0.00
0.00
0.00
4.61
3255
6214
4.677250
CGCAACTAAAGTTCTATCCCTCGT
60.677
45.833
0.00
0.00
35.83
4.18
3265
6224
2.033151
AGCAACGACGCAACTAAAGTTC
60.033
45.455
0.00
0.00
35.83
3.01
3283
6242
2.745821
TCGAACTTAGTTCTCGCTAGCA
59.254
45.455
20.87
0.92
40.05
3.49
3293
6271
4.514066
GTGTGGAAACCATCGAACTTAGTT
59.486
41.667
0.00
0.00
35.28
2.24
3355
6336
4.090090
CAAGTCTTCTCTTCACCCCTCTA
58.910
47.826
0.00
0.00
0.00
2.43
3408
6398
3.243401
GGCCGACAATATTAGGGCAAAAG
60.243
47.826
19.36
0.00
46.93
2.27
3431
6421
3.520290
TGATTAGCTGTAAGACCCACG
57.480
47.619
0.00
0.00
34.07
4.94
3608
6621
8.070769
GTTCATTAACTAGCTTAATTAGCCAGC
58.929
37.037
0.00
0.17
41.68
4.85
3609
6622
9.331282
AGTTCATTAACTAGCTTAATTAGCCAG
57.669
33.333
0.00
0.00
44.26
4.85
3617
6630
8.504005
GCAACTTGAGTTCATTAACTAGCTTAA
58.496
33.333
0.00
0.00
46.09
1.85
3618
6631
7.148639
CGCAACTTGAGTTCATTAACTAGCTTA
60.149
37.037
0.00
0.00
46.09
3.09
3619
6632
6.347725
CGCAACTTGAGTTCATTAACTAGCTT
60.348
38.462
0.00
0.00
46.09
3.74
3620
6633
5.120830
CGCAACTTGAGTTCATTAACTAGCT
59.879
40.000
0.00
0.00
46.09
3.32
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.