Multiple sequence alignment - TraesCS7D01G532200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G532200 chr7D 100.000 2930 0 0 1 2930 626231939 626234868 0.000000e+00 5411.0
1 TraesCS7D01G532200 chr7D 81.738 909 131 23 1081 1977 626260119 626261004 0.000000e+00 726.0
2 TraesCS7D01G532200 chr7D 82.190 831 116 26 1083 1903 626299077 626299885 0.000000e+00 686.0
3 TraesCS7D01G532200 chr7B 87.879 1848 141 38 310 2125 726003848 726005644 0.000000e+00 2095.0
4 TraesCS7D01G532200 chr7B 81.839 892 125 28 1083 1968 725813165 725812305 0.000000e+00 715.0
5 TraesCS7D01G532200 chr7B 91.502 506 35 8 2428 2929 725823083 725822582 0.000000e+00 689.0
6 TraesCS7D01G532200 chr7B 80.682 880 136 26 1083 1954 726016746 726017599 0.000000e+00 652.0
7 TraesCS7D01G532200 chr7B 89.764 508 43 7 2428 2930 725827847 725827344 2.460000e-180 641.0
8 TraesCS7D01G532200 chr7B 91.489 235 17 3 2697 2930 726006097 726006329 1.310000e-83 320.0
9 TraesCS7D01G532200 chr7B 86.667 60 3 4 2868 2927 27809710 27809764 8.770000e-06 62.1
10 TraesCS7D01G532200 chr7A 88.288 1332 92 27 765 2082 721718878 721720159 0.000000e+00 1537.0
11 TraesCS7D01G532200 chr7A 83.333 966 111 34 1084 2026 721779777 721780715 0.000000e+00 846.0
12 TraesCS7D01G532200 chr7A 82.467 827 115 25 1083 1903 721818411 721819213 0.000000e+00 697.0
13 TraesCS7D01G532200 chr7A 80.849 872 132 28 1083 1944 721893818 721894664 0.000000e+00 652.0
14 TraesCS7D01G532200 chr7A 87.885 520 48 5 2423 2930 721720906 721721422 5.400000e-167 597.0
15 TraesCS7D01G532200 chr7A 89.286 224 11 6 2206 2422 721720615 721720832 4.810000e-68 268.0
16 TraesCS7D01G532200 chr7A 90.816 98 4 2 2004 2099 721831343 721831437 3.070000e-25 126.0
17 TraesCS7D01G532200 chr7A 82.000 100 5 7 680 779 721718771 721718857 4.050000e-09 73.1
18 TraesCS7D01G532200 chrUn 86.804 1364 106 35 765 2099 87875625 87876943 0.000000e+00 1454.0
19 TraesCS7D01G532200 chrUn 81.593 967 140 22 1085 2037 87838277 87839219 0.000000e+00 765.0
20 TraesCS7D01G532200 chrUn 81.364 880 129 28 1085 1954 87863302 87864156 0.000000e+00 684.0
21 TraesCS7D01G532200 chrUn 79.837 367 30 21 569 930 87883620 87883947 8.170000e-56 228.0
22 TraesCS7D01G532200 chrUn 94.340 53 3 0 680 732 87875516 87875568 6.730000e-12 82.4
23 TraesCS7D01G532200 chr6D 84.502 271 38 4 2499 2767 359005477 359005745 6.230000e-67 265.0
24 TraesCS7D01G532200 chr6D 85.714 63 8 1 2868 2930 87386301 87386240 6.780000e-07 65.8
25 TraesCS7D01G532200 chr2D 86.498 237 30 2 2506 2741 23449590 23449825 2.900000e-65 259.0
26 TraesCS7D01G532200 chr2D 83.420 193 30 2 2576 2767 423880370 423880561 8.340000e-41 178.0
27 TraesCS7D01G532200 chr2B 81.413 269 45 5 2499 2766 2484085 2483821 6.360000e-52 215.0
28 TraesCS7D01G532200 chr2B 81.041 269 46 5 2499 2766 2366909 2367173 2.960000e-50 209.0
29 TraesCS7D01G532200 chr3B 81.124 249 44 2 2520 2766 618033214 618033461 2.300000e-46 196.0
30 TraesCS7D01G532200 chr4A 75.564 266 55 10 2506 2768 2575147 2574889 3.970000e-24 122.0
31 TraesCS7D01G532200 chr5B 91.837 49 2 2 2879 2927 12663456 12663502 1.880000e-07 67.6
32 TraesCS7D01G532200 chr6A 89.796 49 5 0 256 304 556532941 556532989 2.440000e-06 63.9
33 TraesCS7D01G532200 chr6A 100.000 33 0 0 7 39 364626409 364626377 8.770000e-06 62.1
34 TraesCS7D01G532200 chr3A 87.719 57 4 2 2872 2927 64085225 64085279 2.440000e-06 63.9
35 TraesCS7D01G532200 chr3A 87.719 57 4 2 2871 2927 706643976 706644029 2.440000e-06 63.9
36 TraesCS7D01G532200 chr3A 96.875 32 1 0 8 39 617409032 617409063 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G532200 chr7D 626231939 626234868 2929 False 5411.000 5411 100.00000 1 2930 1 chr7D.!!$F1 2929
1 TraesCS7D01G532200 chr7D 626260119 626261004 885 False 726.000 726 81.73800 1081 1977 1 chr7D.!!$F2 896
2 TraesCS7D01G532200 chr7D 626299077 626299885 808 False 686.000 686 82.19000 1083 1903 1 chr7D.!!$F3 820
3 TraesCS7D01G532200 chr7B 726003848 726006329 2481 False 1207.500 2095 89.68400 310 2930 2 chr7B.!!$F3 2620
4 TraesCS7D01G532200 chr7B 725812305 725813165 860 True 715.000 715 81.83900 1083 1968 1 chr7B.!!$R1 885
5 TraesCS7D01G532200 chr7B 725822582 725823083 501 True 689.000 689 91.50200 2428 2929 1 chr7B.!!$R2 501
6 TraesCS7D01G532200 chr7B 726016746 726017599 853 False 652.000 652 80.68200 1083 1954 1 chr7B.!!$F2 871
7 TraesCS7D01G532200 chr7B 725827344 725827847 503 True 641.000 641 89.76400 2428 2930 1 chr7B.!!$R3 502
8 TraesCS7D01G532200 chr7A 721779777 721780715 938 False 846.000 846 83.33300 1084 2026 1 chr7A.!!$F1 942
9 TraesCS7D01G532200 chr7A 721818411 721819213 802 False 697.000 697 82.46700 1083 1903 1 chr7A.!!$F2 820
10 TraesCS7D01G532200 chr7A 721893818 721894664 846 False 652.000 652 80.84900 1083 1944 1 chr7A.!!$F4 861
11 TraesCS7D01G532200 chr7A 721718771 721721422 2651 False 618.775 1537 86.86475 680 2930 4 chr7A.!!$F5 2250
12 TraesCS7D01G532200 chrUn 87875516 87876943 1427 False 768.200 1454 90.57200 680 2099 2 chrUn.!!$F4 1419
13 TraesCS7D01G532200 chrUn 87838277 87839219 942 False 765.000 765 81.59300 1085 2037 1 chrUn.!!$F1 952
14 TraesCS7D01G532200 chrUn 87863302 87864156 854 False 684.000 684 81.36400 1085 1954 1 chrUn.!!$F2 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.034089 CCCTTAGTTTGGCCCTCCAG 60.034 60.0 0.0 0.0 44.53 3.86 F
114 115 0.036010 CTCCAGCTTCCCGTGACAAT 60.036 55.0 0.0 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 2055 0.107116 GCTCCTACTCCTCCTCGTCA 60.107 60.000 0.0 0.0 0.0 4.35 R
2091 2261 2.878406 TCCCTTTCTGCGTTTCTTCTTG 59.122 45.455 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.882742 ACGTACGTACTTTCTCCGTC 57.117 50.000 21.41 0.00 36.12 4.79
20 21 1.464997 ACGTACGTACTTTCTCCGTCC 59.535 52.381 21.41 0.00 36.12 4.79
21 22 1.734465 CGTACGTACTTTCTCCGTCCT 59.266 52.381 22.55 0.00 36.12 3.85
22 23 2.930040 CGTACGTACTTTCTCCGTCCTA 59.070 50.000 22.55 0.00 36.12 2.94
23 24 3.557595 CGTACGTACTTTCTCCGTCCTAT 59.442 47.826 22.55 0.00 36.12 2.57
24 25 4.745125 CGTACGTACTTTCTCCGTCCTATA 59.255 45.833 22.55 0.00 36.12 1.31
25 26 5.234329 CGTACGTACTTTCTCCGTCCTATAA 59.766 44.000 22.55 0.00 36.12 0.98
26 27 6.073548 CGTACGTACTTTCTCCGTCCTATAAT 60.074 42.308 22.55 0.00 36.12 1.28
27 28 7.116376 CGTACGTACTTTCTCCGTCCTATAATA 59.884 40.741 22.55 0.00 36.12 0.98
28 29 7.992754 ACGTACTTTCTCCGTCCTATAATAT 57.007 36.000 0.00 0.00 0.00 1.28
30 31 9.507329 ACGTACTTTCTCCGTCCTATAATATAA 57.493 33.333 0.00 0.00 0.00 0.98
31 32 9.985318 CGTACTTTCTCCGTCCTATAATATAAG 57.015 37.037 0.00 0.00 0.00 1.73
34 35 8.741841 ACTTTCTCCGTCCTATAATATAAGAGC 58.258 37.037 0.00 0.00 0.00 4.09
35 36 6.922247 TCTCCGTCCTATAATATAAGAGCG 57.078 41.667 0.00 0.00 0.00 5.03
36 37 6.413052 TCTCCGTCCTATAATATAAGAGCGT 58.587 40.000 0.00 0.00 0.00 5.07
37 38 6.883217 TCTCCGTCCTATAATATAAGAGCGTT 59.117 38.462 0.00 0.00 0.00 4.84
38 39 7.392673 TCTCCGTCCTATAATATAAGAGCGTTT 59.607 37.037 0.00 0.00 0.00 3.60
39 40 7.310664 TCCGTCCTATAATATAAGAGCGTTTG 58.689 38.462 0.00 0.00 0.00 2.93
40 41 6.530534 CCGTCCTATAATATAAGAGCGTTTGG 59.469 42.308 0.00 0.00 0.00 3.28
41 42 7.088905 CGTCCTATAATATAAGAGCGTTTGGT 58.911 38.462 0.00 0.00 0.00 3.67
42 43 7.272948 CGTCCTATAATATAAGAGCGTTTGGTC 59.727 40.741 0.00 0.00 42.99 4.02
43 44 7.544915 GTCCTATAATATAAGAGCGTTTGGTCC 59.455 40.741 0.00 0.00 43.71 4.46
44 45 7.453752 TCCTATAATATAAGAGCGTTTGGTCCT 59.546 37.037 0.00 0.00 43.71 3.85
45 46 8.095169 CCTATAATATAAGAGCGTTTGGTCCTT 58.905 37.037 0.00 0.00 43.71 3.36
48 49 2.474410 AAGAGCGTTTGGTCCTTAGG 57.526 50.000 0.00 0.00 43.71 2.69
49 50 1.349067 AGAGCGTTTGGTCCTTAGGT 58.651 50.000 0.00 0.00 43.71 3.08
50 51 1.002087 AGAGCGTTTGGTCCTTAGGTG 59.998 52.381 0.00 0.00 43.71 4.00
51 52 0.605589 AGCGTTTGGTCCTTAGGTGC 60.606 55.000 0.00 0.00 0.00 5.01
52 53 1.583495 GCGTTTGGTCCTTAGGTGCC 61.583 60.000 0.00 2.95 0.00 5.01
53 54 0.958876 CGTTTGGTCCTTAGGTGCCC 60.959 60.000 10.82 5.18 0.00 5.36
54 55 0.958876 GTTTGGTCCTTAGGTGCCCG 60.959 60.000 10.82 0.00 0.00 6.13
55 56 2.757980 TTTGGTCCTTAGGTGCCCGC 62.758 60.000 10.82 0.00 0.00 6.13
56 57 4.484872 GGTCCTTAGGTGCCCGCC 62.485 72.222 0.00 0.00 0.00 6.13
57 58 4.832608 GTCCTTAGGTGCCCGCCG 62.833 72.222 0.00 0.00 0.00 6.46
59 60 4.404098 CCTTAGGTGCCCGCCGTT 62.404 66.667 0.00 0.00 0.00 4.44
60 61 2.818274 CTTAGGTGCCCGCCGTTC 60.818 66.667 0.00 0.00 0.00 3.95
61 62 3.599285 CTTAGGTGCCCGCCGTTCA 62.599 63.158 0.00 0.00 0.00 3.18
62 63 3.887335 TTAGGTGCCCGCCGTTCAC 62.887 63.158 0.00 0.00 0.00 3.18
65 66 4.101790 GTGCCCGCCGTTCACATG 62.102 66.667 0.00 0.00 0.00 3.21
66 67 4.634703 TGCCCGCCGTTCACATGT 62.635 61.111 0.00 0.00 0.00 3.21
67 68 4.101790 GCCCGCCGTTCACATGTG 62.102 66.667 20.18 20.18 0.00 3.21
68 69 4.101790 CCCGCCGTTCACATGTGC 62.102 66.667 21.38 8.01 0.00 4.57
69 70 3.049674 CCGCCGTTCACATGTGCT 61.050 61.111 21.38 0.00 0.00 4.40
70 71 1.739929 CCGCCGTTCACATGTGCTA 60.740 57.895 21.38 8.62 0.00 3.49
71 72 1.295357 CCGCCGTTCACATGTGCTAA 61.295 55.000 21.38 8.43 0.00 3.09
72 73 0.515127 CGCCGTTCACATGTGCTAAA 59.485 50.000 21.38 7.66 0.00 1.85
73 74 1.130373 CGCCGTTCACATGTGCTAAAT 59.870 47.619 21.38 0.00 0.00 1.40
74 75 2.350192 CGCCGTTCACATGTGCTAAATA 59.650 45.455 21.38 0.00 0.00 1.40
75 76 3.181515 CGCCGTTCACATGTGCTAAATAA 60.182 43.478 21.38 6.14 0.00 1.40
76 77 4.342772 GCCGTTCACATGTGCTAAATAAG 58.657 43.478 21.38 6.46 0.00 1.73
77 78 4.094294 GCCGTTCACATGTGCTAAATAAGA 59.906 41.667 21.38 0.00 0.00 2.10
78 79 5.560148 CCGTTCACATGTGCTAAATAAGAC 58.440 41.667 21.38 6.93 0.00 3.01
79 80 5.121611 CCGTTCACATGTGCTAAATAAGACA 59.878 40.000 21.38 0.00 0.00 3.41
80 81 6.015504 CGTTCACATGTGCTAAATAAGACAC 58.984 40.000 21.38 0.00 34.65 3.67
81 82 6.314784 GTTCACATGTGCTAAATAAGACACC 58.685 40.000 21.38 0.00 33.74 4.16
82 83 4.941263 TCACATGTGCTAAATAAGACACCC 59.059 41.667 21.38 0.00 33.74 4.61
83 84 4.096382 CACATGTGCTAAATAAGACACCCC 59.904 45.833 13.94 0.00 33.74 4.95
84 85 4.018415 ACATGTGCTAAATAAGACACCCCT 60.018 41.667 0.00 0.00 33.74 4.79
85 86 4.650972 TGTGCTAAATAAGACACCCCTT 57.349 40.909 0.00 0.00 33.74 3.95
86 87 5.765576 TGTGCTAAATAAGACACCCCTTA 57.234 39.130 0.00 0.00 33.74 2.69
87 88 5.741011 TGTGCTAAATAAGACACCCCTTAG 58.259 41.667 0.00 0.00 33.74 2.18
88 89 5.249852 TGTGCTAAATAAGACACCCCTTAGT 59.750 40.000 0.00 0.00 33.74 2.24
89 90 6.178324 GTGCTAAATAAGACACCCCTTAGTT 58.822 40.000 0.00 0.00 39.37 2.24
90 91 6.657966 GTGCTAAATAAGACACCCCTTAGTTT 59.342 38.462 0.00 0.00 37.82 2.66
91 92 6.657541 TGCTAAATAAGACACCCCTTAGTTTG 59.342 38.462 0.00 0.00 37.82 2.93
92 93 6.095021 GCTAAATAAGACACCCCTTAGTTTGG 59.905 42.308 0.00 0.00 37.82 3.28
93 94 2.287977 AAGACACCCCTTAGTTTGGC 57.712 50.000 0.00 0.00 0.00 4.52
94 95 0.404426 AGACACCCCTTAGTTTGGCC 59.596 55.000 0.00 0.00 0.00 5.36
95 96 0.611062 GACACCCCTTAGTTTGGCCC 60.611 60.000 0.00 0.00 0.00 5.80
96 97 1.071909 ACACCCCTTAGTTTGGCCCT 61.072 55.000 0.00 0.00 0.00 5.19
97 98 0.323451 CACCCCTTAGTTTGGCCCTC 60.323 60.000 0.00 0.00 0.00 4.30
98 99 1.306633 CCCCTTAGTTTGGCCCTCC 59.693 63.158 0.00 0.00 0.00 4.30
99 100 1.506028 CCCCTTAGTTTGGCCCTCCA 61.506 60.000 0.00 0.00 41.55 3.86
100 101 0.034089 CCCTTAGTTTGGCCCTCCAG 60.034 60.000 0.00 0.00 44.53 3.86
101 102 0.681243 CCTTAGTTTGGCCCTCCAGC 60.681 60.000 0.00 0.00 44.53 4.85
102 103 0.329596 CTTAGTTTGGCCCTCCAGCT 59.670 55.000 0.00 0.00 44.53 4.24
103 104 0.777446 TTAGTTTGGCCCTCCAGCTT 59.223 50.000 0.00 0.00 44.53 3.74
104 105 0.328258 TAGTTTGGCCCTCCAGCTTC 59.672 55.000 0.00 0.00 44.53 3.86
105 106 1.979155 GTTTGGCCCTCCAGCTTCC 60.979 63.158 0.00 0.00 44.53 3.46
106 107 3.224007 TTTGGCCCTCCAGCTTCCC 62.224 63.158 0.00 0.00 44.53 3.97
109 110 4.785453 GCCCTCCAGCTTCCCGTG 62.785 72.222 0.00 0.00 0.00 4.94
110 111 3.003173 CCCTCCAGCTTCCCGTGA 61.003 66.667 0.00 0.00 0.00 4.35
111 112 2.266055 CCTCCAGCTTCCCGTGAC 59.734 66.667 0.00 0.00 0.00 3.67
112 113 2.583441 CCTCCAGCTTCCCGTGACA 61.583 63.158 0.00 0.00 0.00 3.58
113 114 1.371183 CTCCAGCTTCCCGTGACAA 59.629 57.895 0.00 0.00 0.00 3.18
114 115 0.036010 CTCCAGCTTCCCGTGACAAT 60.036 55.000 0.00 0.00 0.00 2.71
115 116 0.321564 TCCAGCTTCCCGTGACAATG 60.322 55.000 0.00 0.00 0.00 2.82
116 117 1.308069 CCAGCTTCCCGTGACAATGG 61.308 60.000 0.00 0.00 0.00 3.16
117 118 0.321564 CAGCTTCCCGTGACAATGGA 60.322 55.000 0.00 0.00 33.87 3.41
118 119 0.620556 AGCTTCCCGTGACAATGGAT 59.379 50.000 0.00 0.00 33.87 3.41
119 120 1.017387 GCTTCCCGTGACAATGGATC 58.983 55.000 0.00 0.00 33.87 3.36
120 121 1.290203 CTTCCCGTGACAATGGATCG 58.710 55.000 0.00 0.00 33.87 3.69
121 122 0.742990 TTCCCGTGACAATGGATCGC 60.743 55.000 0.00 0.00 33.87 4.58
122 123 1.153369 CCCGTGACAATGGATCGCT 60.153 57.895 0.00 0.00 33.87 4.93
123 124 0.104120 CCCGTGACAATGGATCGCTA 59.896 55.000 0.00 0.00 33.87 4.26
124 125 1.209128 CCGTGACAATGGATCGCTAC 58.791 55.000 0.00 0.00 33.87 3.58
125 126 1.209128 CGTGACAATGGATCGCTACC 58.791 55.000 0.00 0.00 0.00 3.18
126 127 1.202417 CGTGACAATGGATCGCTACCT 60.202 52.381 0.00 0.00 0.00 3.08
127 128 2.738643 CGTGACAATGGATCGCTACCTT 60.739 50.000 0.00 0.00 0.00 3.50
128 129 3.490249 CGTGACAATGGATCGCTACCTTA 60.490 47.826 0.00 0.00 0.00 2.69
129 130 3.802685 GTGACAATGGATCGCTACCTTAC 59.197 47.826 0.00 0.00 0.00 2.34
130 131 3.181469 TGACAATGGATCGCTACCTTACC 60.181 47.826 0.00 0.00 0.00 2.85
131 132 3.039011 ACAATGGATCGCTACCTTACCT 58.961 45.455 0.00 0.00 0.00 3.08
132 133 3.181465 ACAATGGATCGCTACCTTACCTG 60.181 47.826 0.00 0.00 0.00 4.00
133 134 2.154567 TGGATCGCTACCTTACCTGT 57.845 50.000 0.00 0.00 0.00 4.00
134 135 2.463752 TGGATCGCTACCTTACCTGTT 58.536 47.619 0.00 0.00 0.00 3.16
135 136 2.835764 TGGATCGCTACCTTACCTGTTT 59.164 45.455 0.00 0.00 0.00 2.83
136 137 3.262405 TGGATCGCTACCTTACCTGTTTT 59.738 43.478 0.00 0.00 0.00 2.43
137 138 3.621715 GGATCGCTACCTTACCTGTTTTG 59.378 47.826 0.00 0.00 0.00 2.44
138 139 3.756933 TCGCTACCTTACCTGTTTTGT 57.243 42.857 0.00 0.00 0.00 2.83
139 140 3.656559 TCGCTACCTTACCTGTTTTGTC 58.343 45.455 0.00 0.00 0.00 3.18
140 141 2.740447 CGCTACCTTACCTGTTTTGTCC 59.260 50.000 0.00 0.00 0.00 4.02
141 142 3.556423 CGCTACCTTACCTGTTTTGTCCT 60.556 47.826 0.00 0.00 0.00 3.85
142 143 4.395625 GCTACCTTACCTGTTTTGTCCTT 58.604 43.478 0.00 0.00 0.00 3.36
143 144 5.554070 GCTACCTTACCTGTTTTGTCCTTA 58.446 41.667 0.00 0.00 0.00 2.69
144 145 5.410746 GCTACCTTACCTGTTTTGTCCTTAC 59.589 44.000 0.00 0.00 0.00 2.34
145 146 4.722220 ACCTTACCTGTTTTGTCCTTACC 58.278 43.478 0.00 0.00 0.00 2.85
146 147 3.749609 CCTTACCTGTTTTGTCCTTACCG 59.250 47.826 0.00 0.00 0.00 4.02
147 148 4.383173 CTTACCTGTTTTGTCCTTACCGT 58.617 43.478 0.00 0.00 0.00 4.83
148 149 2.567985 ACCTGTTTTGTCCTTACCGTG 58.432 47.619 0.00 0.00 0.00 4.94
149 150 1.265905 CCTGTTTTGTCCTTACCGTGC 59.734 52.381 0.00 0.00 0.00 5.34
150 151 2.218603 CTGTTTTGTCCTTACCGTGCT 58.781 47.619 0.00 0.00 0.00 4.40
151 152 2.616842 CTGTTTTGTCCTTACCGTGCTT 59.383 45.455 0.00 0.00 0.00 3.91
152 153 3.806380 TGTTTTGTCCTTACCGTGCTTA 58.194 40.909 0.00 0.00 0.00 3.09
153 154 3.810941 TGTTTTGTCCTTACCGTGCTTAG 59.189 43.478 0.00 0.00 0.00 2.18
154 155 3.756933 TTTGTCCTTACCGTGCTTAGT 57.243 42.857 0.00 0.00 0.00 2.24
155 156 4.870123 TTTGTCCTTACCGTGCTTAGTA 57.130 40.909 0.00 0.00 0.00 1.82
156 157 4.445452 TTGTCCTTACCGTGCTTAGTAG 57.555 45.455 0.00 0.00 0.00 2.57
157 158 2.756760 TGTCCTTACCGTGCTTAGTAGG 59.243 50.000 0.00 0.00 0.00 3.18
158 159 1.753073 TCCTTACCGTGCTTAGTAGGC 59.247 52.381 0.00 0.00 0.00 3.93
159 160 1.535437 CCTTACCGTGCTTAGTAGGCG 60.535 57.143 0.00 0.00 0.00 5.52
160 161 1.133790 CTTACCGTGCTTAGTAGGCGT 59.866 52.381 0.00 0.00 0.00 5.68
161 162 1.176527 TACCGTGCTTAGTAGGCGTT 58.823 50.000 0.00 0.00 0.00 4.84
162 163 0.319405 ACCGTGCTTAGTAGGCGTTT 59.681 50.000 0.00 0.00 0.00 3.60
163 164 0.997196 CCGTGCTTAGTAGGCGTTTC 59.003 55.000 0.00 0.00 0.00 2.78
164 165 1.403780 CCGTGCTTAGTAGGCGTTTCT 60.404 52.381 0.00 0.00 0.00 2.52
165 166 1.654105 CGTGCTTAGTAGGCGTTTCTG 59.346 52.381 0.00 0.00 0.00 3.02
166 167 1.393883 GTGCTTAGTAGGCGTTTCTGC 59.606 52.381 0.00 0.00 0.00 4.26
167 168 1.275291 TGCTTAGTAGGCGTTTCTGCT 59.725 47.619 0.00 0.00 34.24 4.24
168 169 1.661112 GCTTAGTAGGCGTTTCTGCTG 59.339 52.381 0.00 0.00 32.20 4.41
169 170 2.674177 GCTTAGTAGGCGTTTCTGCTGA 60.674 50.000 0.00 0.00 32.20 4.26
170 171 3.585862 CTTAGTAGGCGTTTCTGCTGAA 58.414 45.455 1.33 1.33 32.20 3.02
171 172 1.797025 AGTAGGCGTTTCTGCTGAAC 58.203 50.000 5.41 1.35 34.52 3.18
172 173 1.344763 AGTAGGCGTTTCTGCTGAACT 59.655 47.619 5.41 2.81 34.52 3.01
173 174 2.143925 GTAGGCGTTTCTGCTGAACTT 58.856 47.619 5.41 0.00 34.52 2.66
174 175 1.680338 AGGCGTTTCTGCTGAACTTT 58.320 45.000 5.41 0.00 34.52 2.66
175 176 1.604278 AGGCGTTTCTGCTGAACTTTC 59.396 47.619 5.41 0.00 34.52 2.62
176 177 1.333619 GGCGTTTCTGCTGAACTTTCA 59.666 47.619 5.41 0.00 35.57 2.69
177 178 2.223479 GGCGTTTCTGCTGAACTTTCAA 60.223 45.455 5.41 0.00 36.64 2.69
178 179 3.434637 GCGTTTCTGCTGAACTTTCAAA 58.565 40.909 5.41 0.00 36.64 2.69
179 180 3.857093 GCGTTTCTGCTGAACTTTCAAAA 59.143 39.130 5.41 0.00 36.64 2.44
180 181 4.326009 GCGTTTCTGCTGAACTTTCAAAAA 59.674 37.500 5.41 0.00 36.64 1.94
214 215 7.356089 AGTACTATATTCAATGGTTCGGACA 57.644 36.000 0.00 0.00 0.00 4.02
215 216 7.788026 AGTACTATATTCAATGGTTCGGACAA 58.212 34.615 0.00 0.00 0.00 3.18
216 217 7.926555 AGTACTATATTCAATGGTTCGGACAAG 59.073 37.037 0.00 0.00 0.00 3.16
217 218 6.884832 ACTATATTCAATGGTTCGGACAAGA 58.115 36.000 0.00 0.00 0.00 3.02
218 219 7.509546 ACTATATTCAATGGTTCGGACAAGAT 58.490 34.615 0.00 0.00 0.00 2.40
219 220 4.970662 ATTCAATGGTTCGGACAAGATG 57.029 40.909 0.00 0.00 0.00 2.90
220 221 3.417069 TCAATGGTTCGGACAAGATGT 57.583 42.857 0.00 0.00 0.00 3.06
221 222 4.545208 TCAATGGTTCGGACAAGATGTA 57.455 40.909 0.00 0.00 0.00 2.29
222 223 4.250464 TCAATGGTTCGGACAAGATGTAC 58.750 43.478 0.00 0.00 0.00 2.90
223 224 4.020573 TCAATGGTTCGGACAAGATGTACT 60.021 41.667 0.00 0.00 0.00 2.73
224 225 4.553330 ATGGTTCGGACAAGATGTACTT 57.447 40.909 0.00 0.00 39.70 2.24
225 226 5.670792 ATGGTTCGGACAAGATGTACTTA 57.329 39.130 0.00 0.00 37.03 2.24
226 227 5.670792 TGGTTCGGACAAGATGTACTTAT 57.329 39.130 0.00 0.00 37.03 1.73
227 228 6.778834 TGGTTCGGACAAGATGTACTTATA 57.221 37.500 0.00 0.00 37.03 0.98
228 229 7.172868 TGGTTCGGACAAGATGTACTTATAA 57.827 36.000 0.00 0.00 37.03 0.98
229 230 7.788026 TGGTTCGGACAAGATGTACTTATAAT 58.212 34.615 0.00 0.00 37.03 1.28
230 231 8.916062 TGGTTCGGACAAGATGTACTTATAATA 58.084 33.333 0.00 0.00 37.03 0.98
231 232 9.189723 GGTTCGGACAAGATGTACTTATAATAC 57.810 37.037 0.00 0.00 37.03 1.89
232 233 9.962783 GTTCGGACAAGATGTACTTATAATACT 57.037 33.333 0.00 0.00 37.03 2.12
234 235 9.961265 TCGGACAAGATGTACTTATAATACTTG 57.039 33.333 0.00 0.00 37.03 3.16
235 236 8.700644 CGGACAAGATGTACTTATAATACTTGC 58.299 37.037 0.00 0.00 37.55 4.01
236 237 8.989980 GGACAAGATGTACTTATAATACTTGCC 58.010 37.037 0.00 0.00 37.55 4.52
237 238 9.765795 GACAAGATGTACTTATAATACTTGCCT 57.234 33.333 0.00 0.00 37.55 4.75
238 239 9.765795 ACAAGATGTACTTATAATACTTGCCTC 57.234 33.333 0.00 0.00 37.55 4.70
239 240 9.764363 CAAGATGTACTTATAATACTTGCCTCA 57.236 33.333 0.00 0.00 37.03 3.86
241 242 9.935241 AGATGTACTTATAATACTTGCCTCATG 57.065 33.333 0.00 0.00 0.00 3.07
242 243 9.712305 GATGTACTTATAATACTTGCCTCATGT 57.288 33.333 0.00 0.00 0.00 3.21
255 256 8.469309 ACTTGCCTCATGTATTTATAAATGCT 57.531 30.769 21.92 9.16 33.00 3.79
256 257 9.573166 ACTTGCCTCATGTATTTATAAATGCTA 57.427 29.630 21.92 12.06 33.00 3.49
257 258 9.831737 CTTGCCTCATGTATTTATAAATGCTAC 57.168 33.333 21.92 13.02 33.00 3.58
258 259 9.573166 TTGCCTCATGTATTTATAAATGCTACT 57.427 29.630 21.92 8.54 33.00 2.57
259 260 9.219603 TGCCTCATGTATTTATAAATGCTACTC 57.780 33.333 21.92 10.37 33.00 2.59
260 261 8.669243 GCCTCATGTATTTATAAATGCTACTCC 58.331 37.037 21.92 7.39 33.00 3.85
261 262 9.167311 CCTCATGTATTTATAAATGCTACTCCC 57.833 37.037 21.92 3.35 33.00 4.30
262 263 9.950496 CTCATGTATTTATAAATGCTACTCCCT 57.050 33.333 21.92 0.00 33.00 4.20
263 264 9.944376 TCATGTATTTATAAATGCTACTCCCTC 57.056 33.333 21.92 3.43 33.00 4.30
264 265 9.167311 CATGTATTTATAAATGCTACTCCCTCC 57.833 37.037 21.92 0.23 33.00 4.30
265 266 8.270137 TGTATTTATAAATGCTACTCCCTCCA 57.730 34.615 21.92 1.15 33.00 3.86
266 267 8.890472 TGTATTTATAAATGCTACTCCCTCCAT 58.110 33.333 21.92 0.00 33.00 3.41
386 394 9.625747 TCTATTATGGATGACAATAAAACTGCA 57.374 29.630 0.00 0.00 0.00 4.41
389 397 8.523915 TTATGGATGACAATAAAACTGCATCT 57.476 30.769 0.00 0.00 34.22 2.90
390 398 9.625747 TTATGGATGACAATAAAACTGCATCTA 57.374 29.630 0.00 0.00 34.22 1.98
391 399 7.320443 TGGATGACAATAAAACTGCATCTAC 57.680 36.000 0.00 0.00 34.22 2.59
398 406 9.109393 GACAATAAAACTGCATCTACTATTCCA 57.891 33.333 0.00 0.00 0.00 3.53
402 410 4.527509 ACTGCATCTACTATTCCATCCG 57.472 45.455 0.00 0.00 0.00 4.18
403 411 3.257393 CTGCATCTACTATTCCATCCGC 58.743 50.000 0.00 0.00 0.00 5.54
410 418 2.344592 ACTATTCCATCCGCCCCATAA 58.655 47.619 0.00 0.00 0.00 1.90
412 420 4.108570 ACTATTCCATCCGCCCCATAATA 58.891 43.478 0.00 0.00 0.00 0.98
413 421 4.726825 ACTATTCCATCCGCCCCATAATAT 59.273 41.667 0.00 0.00 0.00 1.28
414 422 5.908831 ACTATTCCATCCGCCCCATAATATA 59.091 40.000 0.00 0.00 0.00 0.86
416 424 4.771114 TCCATCCGCCCCATAATATAAG 57.229 45.455 0.00 0.00 0.00 1.73
417 425 4.367166 TCCATCCGCCCCATAATATAAGA 58.633 43.478 0.00 0.00 0.00 2.10
418 426 4.975147 TCCATCCGCCCCATAATATAAGAT 59.025 41.667 0.00 0.00 0.00 2.40
419 427 5.071788 TCCATCCGCCCCATAATATAAGATC 59.928 44.000 0.00 0.00 0.00 2.75
421 429 4.028131 TCCGCCCCATAATATAAGATCGT 58.972 43.478 0.00 0.00 0.00 3.73
422 430 4.119862 CCGCCCCATAATATAAGATCGTG 58.880 47.826 0.00 0.00 0.00 4.35
423 431 4.382685 CCGCCCCATAATATAAGATCGTGT 60.383 45.833 0.00 0.00 0.00 4.49
424 432 5.163488 CCGCCCCATAATATAAGATCGTGTA 60.163 44.000 0.00 0.00 0.00 2.90
425 433 6.334989 CGCCCCATAATATAAGATCGTGTAA 58.665 40.000 0.00 0.00 0.00 2.41
441 449 8.028938 AGATCGTGTAATTTGCAAGCTAAAATT 58.971 29.630 15.14 15.14 38.95 1.82
509 517 7.881232 ACTAAACTGATCTCCCGTTTCATTTTA 59.119 33.333 0.00 0.00 33.40 1.52
510 518 7.703058 AAACTGATCTCCCGTTTCATTTTAT 57.297 32.000 0.00 0.00 0.00 1.40
560 568 8.121086 TCTTGTGATTATAGAAGTTCTCGTACG 58.879 37.037 9.12 9.53 0.00 3.67
564 572 5.550232 TTATAGAAGTTCTCGTACGTGCA 57.450 39.130 16.05 0.00 0.00 4.57
565 573 2.787601 AGAAGTTCTCGTACGTGCAA 57.212 45.000 16.05 6.63 0.00 4.08
567 575 2.793232 AGAAGTTCTCGTACGTGCAAAC 59.207 45.455 16.05 13.40 0.00 2.93
601 609 9.772973 AATAAATTGAAAAGGGGAAACAAGTAC 57.227 29.630 0.00 0.00 0.00 2.73
673 690 9.072375 TGGTACAATGTTTTGAGATTTCACATA 57.928 29.630 0.00 0.00 36.64 2.29
727 744 6.630676 TTGCAATTATTTTTCTCGTGCATC 57.369 33.333 0.00 0.00 39.97 3.91
831 887 5.065218 CACGGTTGGTTATACGTACTAGTCT 59.935 44.000 0.00 0.00 37.85 3.24
858 917 2.675075 GGCGGGCCAGCTTTTGTA 60.675 61.111 27.28 0.00 37.29 2.41
868 927 0.868406 AGCTTTTGTACAGCGACAGC 59.132 50.000 0.00 0.00 42.55 4.40
893 956 7.039714 GCCACATCCATCCATCTATATATCGTA 60.040 40.741 0.00 0.00 0.00 3.43
895 958 9.852091 CACATCCATCCATCTATATATCGTATG 57.148 37.037 0.00 0.00 0.00 2.39
931 994 7.177216 TGTCCTAACCAGACGAGACTAATTAAA 59.823 37.037 0.00 0.00 37.04 1.52
934 997 7.488471 CCTAACCAGACGAGACTAATTAAACAG 59.512 40.741 0.00 0.00 0.00 3.16
939 1002 5.345202 AGACGAGACTAATTAAACAGCAACG 59.655 40.000 0.00 0.00 0.00 4.10
942 1007 6.642131 ACGAGACTAATTAAACAGCAACGTTA 59.358 34.615 0.00 0.00 0.00 3.18
943 1008 7.169645 ACGAGACTAATTAAACAGCAACGTTAA 59.830 33.333 0.00 0.00 0.00 2.01
973 1039 7.093377 CCATAGCTAGCTATCTTCTCCATTCTT 60.093 40.741 30.32 6.60 37.16 2.52
987 1053 2.222027 CATTCTTCATCTAACCCGGCC 58.778 52.381 0.00 0.00 0.00 6.13
988 1054 0.177141 TTCTTCATCTAACCCGGCCG 59.823 55.000 21.04 21.04 0.00 6.13
989 1055 0.974010 TCTTCATCTAACCCGGCCGT 60.974 55.000 26.12 8.42 0.00 5.68
990 1056 0.529992 CTTCATCTAACCCGGCCGTC 60.530 60.000 26.12 0.00 0.00 4.79
991 1057 2.279252 CATCTAACCCGGCCGTCG 60.279 66.667 26.12 16.35 38.88 5.12
1058 1124 2.358737 CGTCTTGGTGTCCCCTGC 60.359 66.667 0.00 0.00 0.00 4.85
1070 1136 2.592861 CCCTGCGGCCTGCTATTC 60.593 66.667 18.14 0.00 46.63 1.75
1071 1137 2.507944 CCTGCGGCCTGCTATTCT 59.492 61.111 18.14 0.00 46.63 2.40
1072 1138 1.890979 CCTGCGGCCTGCTATTCTG 60.891 63.158 18.14 0.00 46.63 3.02
1073 1139 2.514592 TGCGGCCTGCTATTCTGC 60.515 61.111 18.14 4.04 46.63 4.26
1074 1140 2.203126 GCGGCCTGCTATTCTGCT 60.203 61.111 11.61 0.00 41.73 4.24
1075 1141 1.069765 GCGGCCTGCTATTCTGCTA 59.930 57.895 11.61 0.00 41.73 3.49
1076 1142 0.948141 GCGGCCTGCTATTCTGCTAG 60.948 60.000 11.61 0.00 41.73 3.42
1077 1143 0.390860 CGGCCTGCTATTCTGCTAGT 59.609 55.000 0.00 0.00 0.00 2.57
1078 1144 1.604185 CGGCCTGCTATTCTGCTAGTC 60.604 57.143 0.00 0.00 0.00 2.59
1079 1145 1.270571 GGCCTGCTATTCTGCTAGTCC 60.271 57.143 0.00 0.00 0.00 3.85
1080 1146 1.414181 GCCTGCTATTCTGCTAGTCCA 59.586 52.381 0.00 0.00 0.00 4.02
1081 1147 2.804933 GCCTGCTATTCTGCTAGTCCAC 60.805 54.545 0.00 0.00 0.00 4.02
1086 1164 3.256136 GCTATTCTGCTAGTCCACCGTAT 59.744 47.826 0.00 0.00 0.00 3.06
1233 1323 2.597117 GATTCCACATTGCGGCCGTG 62.597 60.000 28.70 19.90 0.00 4.94
1398 1521 1.879380 CGGTTCATGCTCAACAAGGAA 59.121 47.619 0.00 0.00 0.00 3.36
1481 1610 2.620562 TCGACGTCGACTTCAGGAA 58.379 52.632 34.97 11.39 44.22 3.36
1651 1789 2.981302 CCACGATCCAGAGTGCCA 59.019 61.111 0.00 0.00 37.07 4.92
2091 2261 2.562912 CGTGTTCCTGCATGCACC 59.437 61.111 18.46 5.63 0.00 5.01
2125 2295 4.326826 CAGAAAGGGACATAACAGCAGAA 58.673 43.478 0.00 0.00 0.00 3.02
2126 2296 4.761739 CAGAAAGGGACATAACAGCAGAAA 59.238 41.667 0.00 0.00 0.00 2.52
2127 2297 5.241506 CAGAAAGGGACATAACAGCAGAAAA 59.758 40.000 0.00 0.00 0.00 2.29
2128 2298 5.474876 AGAAAGGGACATAACAGCAGAAAAG 59.525 40.000 0.00 0.00 0.00 2.27
2129 2299 4.640771 AGGGACATAACAGCAGAAAAGA 57.359 40.909 0.00 0.00 0.00 2.52
2130 2300 4.327680 AGGGACATAACAGCAGAAAAGAC 58.672 43.478 0.00 0.00 0.00 3.01
2131 2301 3.440522 GGGACATAACAGCAGAAAAGACC 59.559 47.826 0.00 0.00 0.00 3.85
2132 2302 3.440522 GGACATAACAGCAGAAAAGACCC 59.559 47.826 0.00 0.00 0.00 4.46
2133 2303 3.421844 ACATAACAGCAGAAAAGACCCC 58.578 45.455 0.00 0.00 0.00 4.95
2134 2304 2.579410 TAACAGCAGAAAAGACCCCC 57.421 50.000 0.00 0.00 0.00 5.40
2135 2305 0.555769 AACAGCAGAAAAGACCCCCA 59.444 50.000 0.00 0.00 0.00 4.96
2136 2306 0.555769 ACAGCAGAAAAGACCCCCAA 59.444 50.000 0.00 0.00 0.00 4.12
2137 2307 1.063266 ACAGCAGAAAAGACCCCCAAA 60.063 47.619 0.00 0.00 0.00 3.28
2138 2308 1.615392 CAGCAGAAAAGACCCCCAAAG 59.385 52.381 0.00 0.00 0.00 2.77
2139 2309 1.499007 AGCAGAAAAGACCCCCAAAGA 59.501 47.619 0.00 0.00 0.00 2.52
2140 2310 2.091333 AGCAGAAAAGACCCCCAAAGAA 60.091 45.455 0.00 0.00 0.00 2.52
2141 2311 2.297315 GCAGAAAAGACCCCCAAAGAAG 59.703 50.000 0.00 0.00 0.00 2.85
2142 2312 2.893489 CAGAAAAGACCCCCAAAGAAGG 59.107 50.000 0.00 0.00 0.00 3.46
2143 2313 2.789399 AGAAAAGACCCCCAAAGAAGGA 59.211 45.455 0.00 0.00 0.00 3.36
2144 2314 3.206639 AGAAAAGACCCCCAAAGAAGGAA 59.793 43.478 0.00 0.00 0.00 3.36
2145 2315 3.699025 AAAGACCCCCAAAGAAGGAAA 57.301 42.857 0.00 0.00 0.00 3.13
2146 2316 3.699025 AAGACCCCCAAAGAAGGAAAA 57.301 42.857 0.00 0.00 0.00 2.29
2147 2317 3.923273 AGACCCCCAAAGAAGGAAAAT 57.077 42.857 0.00 0.00 0.00 1.82
2148 2318 3.510459 AGACCCCCAAAGAAGGAAAATG 58.490 45.455 0.00 0.00 0.00 2.32
2149 2319 3.116746 AGACCCCCAAAGAAGGAAAATGT 60.117 43.478 0.00 0.00 0.00 2.71
2150 2320 4.107311 AGACCCCCAAAGAAGGAAAATGTA 59.893 41.667 0.00 0.00 0.00 2.29
2151 2321 4.157246 ACCCCCAAAGAAGGAAAATGTAC 58.843 43.478 0.00 0.00 0.00 2.90
2152 2322 4.156477 CCCCCAAAGAAGGAAAATGTACA 58.844 43.478 0.00 0.00 0.00 2.90
2153 2323 4.591072 CCCCCAAAGAAGGAAAATGTACAA 59.409 41.667 0.00 0.00 0.00 2.41
2154 2324 5.071115 CCCCCAAAGAAGGAAAATGTACAAA 59.929 40.000 0.00 0.00 0.00 2.83
2155 2325 6.223120 CCCCAAAGAAGGAAAATGTACAAAG 58.777 40.000 0.00 0.00 0.00 2.77
2156 2326 6.041523 CCCCAAAGAAGGAAAATGTACAAAGA 59.958 38.462 0.00 0.00 0.00 2.52
2157 2327 7.256296 CCCCAAAGAAGGAAAATGTACAAAGAT 60.256 37.037 0.00 0.00 0.00 2.40
2158 2328 7.814587 CCCAAAGAAGGAAAATGTACAAAGATC 59.185 37.037 0.00 0.00 0.00 2.75
2159 2329 7.538678 CCAAAGAAGGAAAATGTACAAAGATCG 59.461 37.037 0.00 0.00 0.00 3.69
2160 2330 6.183309 AGAAGGAAAATGTACAAAGATCGC 57.817 37.500 0.00 0.00 0.00 4.58
2161 2331 4.965119 AGGAAAATGTACAAAGATCGCC 57.035 40.909 0.00 0.00 0.00 5.54
2162 2332 4.589908 AGGAAAATGTACAAAGATCGCCT 58.410 39.130 0.00 0.00 0.00 5.52
2163 2333 4.636206 AGGAAAATGTACAAAGATCGCCTC 59.364 41.667 0.00 0.00 0.00 4.70
2164 2334 4.394920 GGAAAATGTACAAAGATCGCCTCA 59.605 41.667 0.00 0.00 0.00 3.86
2165 2335 5.066505 GGAAAATGTACAAAGATCGCCTCAT 59.933 40.000 0.00 0.00 0.00 2.90
2166 2336 5.741388 AAATGTACAAAGATCGCCTCATC 57.259 39.130 0.00 0.00 0.00 2.92
2167 2337 2.809446 TGTACAAAGATCGCCTCATCG 58.191 47.619 0.00 0.00 0.00 3.84
2168 2338 1.523095 GTACAAAGATCGCCTCATCGC 59.477 52.381 0.00 0.00 0.00 4.58
2169 2339 0.811616 ACAAAGATCGCCTCATCGCC 60.812 55.000 0.00 0.00 0.00 5.54
2170 2340 0.531532 CAAAGATCGCCTCATCGCCT 60.532 55.000 0.00 0.00 0.00 5.52
2171 2341 0.531532 AAAGATCGCCTCATCGCCTG 60.532 55.000 0.00 0.00 0.00 4.85
2172 2342 1.395045 AAGATCGCCTCATCGCCTGA 61.395 55.000 0.00 0.00 0.00 3.86
2173 2343 1.184322 AGATCGCCTCATCGCCTGAT 61.184 55.000 0.00 0.00 32.10 2.90
2174 2344 0.735632 GATCGCCTCATCGCCTGATC 60.736 60.000 0.00 0.00 32.10 2.92
2175 2345 1.184322 ATCGCCTCATCGCCTGATCT 61.184 55.000 0.00 0.00 32.10 2.75
2176 2346 1.068753 CGCCTCATCGCCTGATCTT 59.931 57.895 0.00 0.00 32.10 2.40
2177 2347 0.943359 CGCCTCATCGCCTGATCTTC 60.943 60.000 0.00 0.00 32.10 2.87
2178 2348 0.392336 GCCTCATCGCCTGATCTTCT 59.608 55.000 0.00 0.00 32.10 2.85
2179 2349 1.202627 GCCTCATCGCCTGATCTTCTT 60.203 52.381 0.00 0.00 32.10 2.52
2180 2350 2.753296 CCTCATCGCCTGATCTTCTTC 58.247 52.381 0.00 0.00 32.10 2.87
2181 2351 2.102084 CCTCATCGCCTGATCTTCTTCA 59.898 50.000 0.00 0.00 32.10 3.02
2182 2352 3.122297 CTCATCGCCTGATCTTCTTCAC 58.878 50.000 0.00 0.00 32.10 3.18
2183 2353 2.762887 TCATCGCCTGATCTTCTTCACT 59.237 45.455 0.00 0.00 30.49 3.41
2184 2354 2.949451 TCGCCTGATCTTCTTCACTC 57.051 50.000 0.00 0.00 0.00 3.51
2185 2355 1.478510 TCGCCTGATCTTCTTCACTCC 59.521 52.381 0.00 0.00 0.00 3.85
2186 2356 1.800655 CGCCTGATCTTCTTCACTCCG 60.801 57.143 0.00 0.00 0.00 4.63
2187 2357 1.205893 GCCTGATCTTCTTCACTCCGT 59.794 52.381 0.00 0.00 0.00 4.69
2188 2358 2.886081 CCTGATCTTCTTCACTCCGTG 58.114 52.381 0.00 0.00 34.45 4.94
2189 2359 2.493675 CCTGATCTTCTTCACTCCGTGA 59.506 50.000 0.00 0.00 41.09 4.35
2190 2360 3.506810 CTGATCTTCTTCACTCCGTGAC 58.493 50.000 0.00 0.00 42.60 3.67
2191 2361 2.095212 TGATCTTCTTCACTCCGTGACG 60.095 50.000 0.00 0.00 42.60 4.35
2242 2744 7.822161 TGCTGGTGCATATTATCAAGTATTT 57.178 32.000 0.00 0.00 45.31 1.40
2244 2746 8.136800 TGCTGGTGCATATTATCAAGTATTTTG 58.863 33.333 0.00 0.00 45.31 2.44
2253 2755 9.875708 ATATTATCAAGTATTTTGGTGGGCTAA 57.124 29.630 0.00 0.00 0.00 3.09
2255 2757 5.975693 TCAAGTATTTTGGTGGGCTAAAG 57.024 39.130 0.00 0.00 0.00 1.85
2256 2758 5.636123 TCAAGTATTTTGGTGGGCTAAAGA 58.364 37.500 0.00 0.00 0.00 2.52
2257 2759 6.252995 TCAAGTATTTTGGTGGGCTAAAGAT 58.747 36.000 0.00 0.00 0.00 2.40
2258 2760 6.152661 TCAAGTATTTTGGTGGGCTAAAGATG 59.847 38.462 0.00 0.00 0.00 2.90
2266 2768 3.558109 GGTGGGCTAAAGATGATAGAGGC 60.558 52.174 0.00 0.00 0.00 4.70
2275 2777 4.399004 AGATGATAGAGGCACACACTTC 57.601 45.455 0.00 0.00 0.00 3.01
2279 2781 3.771479 TGATAGAGGCACACACTTCAGAT 59.229 43.478 0.00 0.00 0.00 2.90
2313 2822 5.464722 GTCATTGTACTCATGCATGGACTAG 59.535 44.000 25.97 17.73 0.00 2.57
2314 2823 5.129320 TCATTGTACTCATGCATGGACTAGT 59.871 40.000 25.97 22.11 0.00 2.57
2315 2824 6.323739 TCATTGTACTCATGCATGGACTAGTA 59.676 38.462 25.97 21.14 0.00 1.82
2316 2825 5.515797 TGTACTCATGCATGGACTAGTAC 57.484 43.478 30.82 30.82 39.66 2.73
2329 2838 4.017808 GGACTAGTACATGAGTGTGAGGT 58.982 47.826 0.00 0.00 39.39 3.85
2333 2842 5.717178 ACTAGTACATGAGTGTGAGGTTGAT 59.283 40.000 0.00 0.00 39.39 2.57
2359 2868 4.066490 TCGGCAGCTAGTCTAATCTCTAC 58.934 47.826 0.00 0.00 0.00 2.59
2382 2891 6.805150 ACTGTCTCATCATAGGTATATCCCA 58.195 40.000 0.00 0.00 36.75 4.37
2422 2931 1.826720 GGAATTTGGAGATGCCTTGCA 59.173 47.619 0.00 0.00 44.86 4.08
2488 3081 1.271434 GCTTCTTTTCCGTCCTCCCTT 60.271 52.381 0.00 0.00 0.00 3.95
2499 3092 0.047802 TCCTCCCTTCCCATCCCATT 59.952 55.000 0.00 0.00 0.00 3.16
2566 3160 7.825270 TCATACAACCATCCGTTACAACTTTAT 59.175 33.333 0.00 0.00 31.77 1.40
2572 3166 5.064707 CCATCCGTTACAACTTTATCCACAG 59.935 44.000 0.00 0.00 0.00 3.66
2600 3194 5.581085 GCGGAACACTATTAAGAATCACACT 59.419 40.000 0.00 0.00 0.00 3.55
2758 3352 5.129320 GGAGACCAGCCCAAATAATCATTTT 59.871 40.000 0.00 0.00 31.82 1.82
2801 3395 4.977739 TGGGGATCTGTTTTATCCTCATCT 59.022 41.667 0.45 0.00 46.83 2.90
2896 3493 9.352784 CTTGTCTCTTTAAATTTTGTGTGTGAA 57.647 29.630 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.604735 TTATAGGACGGAGAAAGTACGTAC 57.395 41.667 18.10 18.10 41.40 3.67
5 6 9.985318 CTTATATTATAGGACGGAGAAAGTACG 57.015 37.037 0.00 0.00 0.00 3.67
8 9 8.741841 GCTCTTATATTATAGGACGGAGAAAGT 58.258 37.037 0.00 0.00 0.00 2.66
9 10 7.911205 CGCTCTTATATTATAGGACGGAGAAAG 59.089 40.741 0.00 0.00 0.00 2.62
10 11 7.392673 ACGCTCTTATATTATAGGACGGAGAAA 59.607 37.037 15.28 0.00 0.00 2.52
11 12 6.883217 ACGCTCTTATATTATAGGACGGAGAA 59.117 38.462 15.28 0.00 0.00 2.87
12 13 6.413052 ACGCTCTTATATTATAGGACGGAGA 58.587 40.000 15.28 3.34 0.00 3.71
13 14 6.680874 ACGCTCTTATATTATAGGACGGAG 57.319 41.667 15.28 0.00 0.00 4.63
14 15 7.310664 CAAACGCTCTTATATTATAGGACGGA 58.689 38.462 15.28 0.00 0.00 4.69
15 16 6.530534 CCAAACGCTCTTATATTATAGGACGG 59.469 42.308 15.28 5.50 0.00 4.79
16 17 7.088905 ACCAAACGCTCTTATATTATAGGACG 58.911 38.462 12.07 12.07 0.00 4.79
17 18 7.544915 GGACCAAACGCTCTTATATTATAGGAC 59.455 40.741 0.00 0.00 0.00 3.85
18 19 7.453752 AGGACCAAACGCTCTTATATTATAGGA 59.546 37.037 0.00 0.00 0.00 2.94
19 20 7.612677 AGGACCAAACGCTCTTATATTATAGG 58.387 38.462 0.00 0.00 0.00 2.57
22 23 8.095169 CCTAAGGACCAAACGCTCTTATATTAT 58.905 37.037 0.00 0.00 0.00 1.28
23 24 7.070322 ACCTAAGGACCAAACGCTCTTATATTA 59.930 37.037 0.00 0.00 0.00 0.98
24 25 6.126854 ACCTAAGGACCAAACGCTCTTATATT 60.127 38.462 0.00 0.00 0.00 1.28
25 26 5.365895 ACCTAAGGACCAAACGCTCTTATAT 59.634 40.000 0.00 0.00 0.00 0.86
26 27 4.713321 ACCTAAGGACCAAACGCTCTTATA 59.287 41.667 0.00 0.00 0.00 0.98
27 28 3.518303 ACCTAAGGACCAAACGCTCTTAT 59.482 43.478 0.00 0.00 0.00 1.73
28 29 2.901839 ACCTAAGGACCAAACGCTCTTA 59.098 45.455 0.00 0.00 0.00 2.10
29 30 1.697982 ACCTAAGGACCAAACGCTCTT 59.302 47.619 0.00 0.00 0.00 2.85
30 31 1.002087 CACCTAAGGACCAAACGCTCT 59.998 52.381 0.00 0.00 0.00 4.09
31 32 1.439679 CACCTAAGGACCAAACGCTC 58.560 55.000 0.00 0.00 0.00 5.03
32 33 0.605589 GCACCTAAGGACCAAACGCT 60.606 55.000 0.00 0.00 0.00 5.07
33 34 1.583495 GGCACCTAAGGACCAAACGC 61.583 60.000 0.00 0.00 0.00 4.84
34 35 2.551644 GGCACCTAAGGACCAAACG 58.448 57.895 0.00 0.00 0.00 3.60
48 49 4.101790 CATGTGAACGGCGGGCAC 62.102 66.667 21.99 21.99 0.00 5.01
49 50 4.634703 ACATGTGAACGGCGGGCA 62.635 61.111 13.24 5.75 0.00 5.36
50 51 4.101790 CACATGTGAACGGCGGGC 62.102 66.667 21.64 2.58 0.00 6.13
51 52 4.101790 GCACATGTGAACGGCGGG 62.102 66.667 29.80 0.00 0.00 6.13
52 53 1.295357 TTAGCACATGTGAACGGCGG 61.295 55.000 29.80 0.09 0.00 6.13
53 54 0.515127 TTTAGCACATGTGAACGGCG 59.485 50.000 29.80 4.80 0.00 6.46
54 55 2.919666 ATTTAGCACATGTGAACGGC 57.080 45.000 29.80 13.50 0.00 5.68
55 56 5.121611 TGTCTTATTTAGCACATGTGAACGG 59.878 40.000 29.80 2.54 0.00 4.44
56 57 6.015504 GTGTCTTATTTAGCACATGTGAACG 58.984 40.000 29.80 2.96 33.69 3.95
57 58 6.314784 GGTGTCTTATTTAGCACATGTGAAC 58.685 40.000 29.80 12.58 34.56 3.18
58 59 5.414454 GGGTGTCTTATTTAGCACATGTGAA 59.586 40.000 29.80 15.05 34.56 3.18
59 60 4.941263 GGGTGTCTTATTTAGCACATGTGA 59.059 41.667 29.80 8.82 34.56 3.58
60 61 4.096382 GGGGTGTCTTATTTAGCACATGTG 59.904 45.833 21.83 21.83 34.56 3.21
61 62 4.018415 AGGGGTGTCTTATTTAGCACATGT 60.018 41.667 0.00 0.00 34.56 3.21
62 63 4.526970 AGGGGTGTCTTATTTAGCACATG 58.473 43.478 0.00 0.00 34.56 3.21
63 64 4.862641 AGGGGTGTCTTATTTAGCACAT 57.137 40.909 0.00 0.00 34.56 3.21
64 65 4.650972 AAGGGGTGTCTTATTTAGCACA 57.349 40.909 0.00 0.00 34.56 4.57
65 66 5.742063 ACTAAGGGGTGTCTTATTTAGCAC 58.258 41.667 0.00 0.00 33.12 4.40
66 67 6.382919 AACTAAGGGGTGTCTTATTTAGCA 57.617 37.500 0.00 0.00 0.00 3.49
67 68 6.095021 CCAAACTAAGGGGTGTCTTATTTAGC 59.905 42.308 0.00 0.00 0.00 3.09
68 69 6.095021 GCCAAACTAAGGGGTGTCTTATTTAG 59.905 42.308 0.00 0.00 0.00 1.85
69 70 5.947566 GCCAAACTAAGGGGTGTCTTATTTA 59.052 40.000 0.00 0.00 0.00 1.40
70 71 4.770531 GCCAAACTAAGGGGTGTCTTATTT 59.229 41.667 0.00 0.00 0.00 1.40
71 72 4.341487 GCCAAACTAAGGGGTGTCTTATT 58.659 43.478 0.00 0.00 0.00 1.40
72 73 3.308904 GGCCAAACTAAGGGGTGTCTTAT 60.309 47.826 0.00 0.00 0.00 1.73
73 74 2.040679 GGCCAAACTAAGGGGTGTCTTA 59.959 50.000 0.00 0.00 0.00 2.10
74 75 1.203013 GGCCAAACTAAGGGGTGTCTT 60.203 52.381 0.00 0.00 0.00 3.01
75 76 0.404426 GGCCAAACTAAGGGGTGTCT 59.596 55.000 0.00 0.00 0.00 3.41
76 77 0.611062 GGGCCAAACTAAGGGGTGTC 60.611 60.000 4.39 0.00 0.00 3.67
77 78 1.071909 AGGGCCAAACTAAGGGGTGT 61.072 55.000 6.18 0.00 0.00 4.16
78 79 0.323451 GAGGGCCAAACTAAGGGGTG 60.323 60.000 6.18 0.00 0.00 4.61
79 80 1.506907 GGAGGGCCAAACTAAGGGGT 61.507 60.000 6.18 0.00 0.00 4.95
80 81 1.306633 GGAGGGCCAAACTAAGGGG 59.693 63.158 6.18 0.00 0.00 4.79
81 82 0.034089 CTGGAGGGCCAAACTAAGGG 60.034 60.000 6.18 0.00 45.41 3.95
82 83 0.681243 GCTGGAGGGCCAAACTAAGG 60.681 60.000 6.18 0.00 45.41 2.69
83 84 0.329596 AGCTGGAGGGCCAAACTAAG 59.670 55.000 6.18 0.00 45.41 2.18
84 85 0.777446 AAGCTGGAGGGCCAAACTAA 59.223 50.000 6.18 0.00 45.41 2.24
85 86 0.328258 GAAGCTGGAGGGCCAAACTA 59.672 55.000 6.18 0.00 45.41 2.24
86 87 1.075659 GAAGCTGGAGGGCCAAACT 59.924 57.895 6.18 0.00 45.41 2.66
87 88 1.979155 GGAAGCTGGAGGGCCAAAC 60.979 63.158 6.18 0.00 45.41 2.93
88 89 2.440599 GGAAGCTGGAGGGCCAAA 59.559 61.111 6.18 0.00 45.41 3.28
89 90 3.661648 GGGAAGCTGGAGGGCCAA 61.662 66.667 6.18 0.00 45.41 4.52
92 93 4.785453 CACGGGAAGCTGGAGGGC 62.785 72.222 0.00 0.00 0.00 5.19
93 94 3.003173 TCACGGGAAGCTGGAGGG 61.003 66.667 0.00 0.00 0.00 4.30
94 95 2.111999 TTGTCACGGGAAGCTGGAGG 62.112 60.000 0.00 0.00 0.00 4.30
95 96 0.036010 ATTGTCACGGGAAGCTGGAG 60.036 55.000 0.00 0.00 0.00 3.86
96 97 0.321564 CATTGTCACGGGAAGCTGGA 60.322 55.000 0.00 0.00 0.00 3.86
97 98 1.308069 CCATTGTCACGGGAAGCTGG 61.308 60.000 0.00 0.00 0.00 4.85
98 99 0.321564 TCCATTGTCACGGGAAGCTG 60.322 55.000 0.00 0.00 0.00 4.24
99 100 0.620556 ATCCATTGTCACGGGAAGCT 59.379 50.000 0.00 0.00 33.73 3.74
100 101 1.017387 GATCCATTGTCACGGGAAGC 58.983 55.000 0.00 0.00 33.73 3.86
101 102 1.290203 CGATCCATTGTCACGGGAAG 58.710 55.000 0.00 0.00 33.73 3.46
102 103 0.742990 GCGATCCATTGTCACGGGAA 60.743 55.000 0.00 0.00 33.73 3.97
103 104 1.153449 GCGATCCATTGTCACGGGA 60.153 57.895 0.00 0.00 34.70 5.14
104 105 0.104120 TAGCGATCCATTGTCACGGG 59.896 55.000 0.00 0.00 0.00 5.28
105 106 1.209128 GTAGCGATCCATTGTCACGG 58.791 55.000 0.00 0.00 0.00 4.94
106 107 1.202417 AGGTAGCGATCCATTGTCACG 60.202 52.381 0.00 0.00 0.00 4.35
107 108 2.604046 AGGTAGCGATCCATTGTCAC 57.396 50.000 0.00 0.00 0.00 3.67
108 109 3.181469 GGTAAGGTAGCGATCCATTGTCA 60.181 47.826 0.00 0.00 0.00 3.58
109 110 3.069729 AGGTAAGGTAGCGATCCATTGTC 59.930 47.826 0.00 0.00 0.00 3.18
110 111 3.039011 AGGTAAGGTAGCGATCCATTGT 58.961 45.455 0.00 0.00 0.00 2.71
111 112 3.181465 ACAGGTAAGGTAGCGATCCATTG 60.181 47.826 0.00 0.13 0.00 2.82
112 113 3.039011 ACAGGTAAGGTAGCGATCCATT 58.961 45.455 0.00 0.00 0.00 3.16
113 114 2.679082 ACAGGTAAGGTAGCGATCCAT 58.321 47.619 0.00 0.00 0.00 3.41
114 115 2.154567 ACAGGTAAGGTAGCGATCCA 57.845 50.000 0.00 0.00 0.00 3.41
115 116 3.538634 AAACAGGTAAGGTAGCGATCC 57.461 47.619 0.00 0.00 0.00 3.36
116 117 4.251268 ACAAAACAGGTAAGGTAGCGATC 58.749 43.478 0.00 0.00 0.00 3.69
117 118 4.251268 GACAAAACAGGTAAGGTAGCGAT 58.749 43.478 0.00 0.00 0.00 4.58
118 119 3.555586 GGACAAAACAGGTAAGGTAGCGA 60.556 47.826 0.00 0.00 0.00 4.93
119 120 2.740447 GGACAAAACAGGTAAGGTAGCG 59.260 50.000 0.00 0.00 0.00 4.26
120 121 4.017177 AGGACAAAACAGGTAAGGTAGC 57.983 45.455 0.00 0.00 0.00 3.58
121 122 5.936372 GGTAAGGACAAAACAGGTAAGGTAG 59.064 44.000 0.00 0.00 0.00 3.18
122 123 5.511202 CGGTAAGGACAAAACAGGTAAGGTA 60.511 44.000 0.00 0.00 0.00 3.08
123 124 4.722220 GGTAAGGACAAAACAGGTAAGGT 58.278 43.478 0.00 0.00 0.00 3.50
124 125 3.749609 CGGTAAGGACAAAACAGGTAAGG 59.250 47.826 0.00 0.00 0.00 2.69
125 126 4.212636 CACGGTAAGGACAAAACAGGTAAG 59.787 45.833 0.00 0.00 0.00 2.34
126 127 4.128643 CACGGTAAGGACAAAACAGGTAA 58.871 43.478 0.00 0.00 0.00 2.85
127 128 3.731089 CACGGTAAGGACAAAACAGGTA 58.269 45.455 0.00 0.00 0.00 3.08
128 129 2.567985 CACGGTAAGGACAAAACAGGT 58.432 47.619 0.00 0.00 0.00 4.00
129 130 1.265905 GCACGGTAAGGACAAAACAGG 59.734 52.381 0.00 0.00 0.00 4.00
130 131 2.218603 AGCACGGTAAGGACAAAACAG 58.781 47.619 0.00 0.00 0.00 3.16
131 132 2.335316 AGCACGGTAAGGACAAAACA 57.665 45.000 0.00 0.00 0.00 2.83
132 133 3.811497 ACTAAGCACGGTAAGGACAAAAC 59.189 43.478 0.00 0.00 0.00 2.43
133 134 4.075963 ACTAAGCACGGTAAGGACAAAA 57.924 40.909 0.00 0.00 0.00 2.44
134 135 3.756933 ACTAAGCACGGTAAGGACAAA 57.243 42.857 0.00 0.00 0.00 2.83
135 136 3.194116 CCTACTAAGCACGGTAAGGACAA 59.806 47.826 0.00 0.00 0.00 3.18
136 137 2.756760 CCTACTAAGCACGGTAAGGACA 59.243 50.000 0.00 0.00 0.00 4.02
137 138 2.480932 GCCTACTAAGCACGGTAAGGAC 60.481 54.545 0.00 0.00 0.00 3.85
138 139 1.753073 GCCTACTAAGCACGGTAAGGA 59.247 52.381 0.00 0.00 0.00 3.36
139 140 1.535437 CGCCTACTAAGCACGGTAAGG 60.535 57.143 0.00 0.00 0.00 2.69
140 141 1.133790 ACGCCTACTAAGCACGGTAAG 59.866 52.381 0.00 0.00 0.00 2.34
141 142 1.176527 ACGCCTACTAAGCACGGTAA 58.823 50.000 0.00 0.00 0.00 2.85
142 143 1.176527 AACGCCTACTAAGCACGGTA 58.823 50.000 0.00 0.00 0.00 4.02
143 144 0.319405 AAACGCCTACTAAGCACGGT 59.681 50.000 0.00 0.00 0.00 4.83
144 145 0.997196 GAAACGCCTACTAAGCACGG 59.003 55.000 0.00 0.00 0.00 4.94
145 146 1.654105 CAGAAACGCCTACTAAGCACG 59.346 52.381 0.00 0.00 0.00 5.34
146 147 1.393883 GCAGAAACGCCTACTAAGCAC 59.606 52.381 0.00 0.00 0.00 4.40
147 148 1.275291 AGCAGAAACGCCTACTAAGCA 59.725 47.619 0.00 0.00 0.00 3.91
148 149 1.661112 CAGCAGAAACGCCTACTAAGC 59.339 52.381 0.00 0.00 0.00 3.09
149 150 3.232213 TCAGCAGAAACGCCTACTAAG 57.768 47.619 0.00 0.00 0.00 2.18
150 151 3.006537 AGTTCAGCAGAAACGCCTACTAA 59.993 43.478 0.00 0.00 35.08 2.24
151 152 2.561419 AGTTCAGCAGAAACGCCTACTA 59.439 45.455 0.00 0.00 35.08 1.82
152 153 1.344763 AGTTCAGCAGAAACGCCTACT 59.655 47.619 0.00 0.00 35.08 2.57
153 154 1.797025 AGTTCAGCAGAAACGCCTAC 58.203 50.000 0.00 0.00 35.08 3.18
154 155 2.543777 AAGTTCAGCAGAAACGCCTA 57.456 45.000 0.00 0.00 35.08 3.93
155 156 1.604278 GAAAGTTCAGCAGAAACGCCT 59.396 47.619 0.00 0.00 35.08 5.52
156 157 1.333619 TGAAAGTTCAGCAGAAACGCC 59.666 47.619 0.00 0.00 35.08 5.68
157 158 2.755836 TGAAAGTTCAGCAGAAACGC 57.244 45.000 0.00 0.00 35.08 4.84
188 189 9.085645 TGTCCGAACCATTGAATATAGTACTAT 57.914 33.333 19.07 19.07 0.00 2.12
189 190 8.467963 TGTCCGAACCATTGAATATAGTACTA 57.532 34.615 4.77 4.77 0.00 1.82
190 191 7.356089 TGTCCGAACCATTGAATATAGTACT 57.644 36.000 0.00 0.00 0.00 2.73
191 192 7.924412 TCTTGTCCGAACCATTGAATATAGTAC 59.076 37.037 0.00 0.00 0.00 2.73
192 193 8.014070 TCTTGTCCGAACCATTGAATATAGTA 57.986 34.615 0.00 0.00 0.00 1.82
193 194 6.884832 TCTTGTCCGAACCATTGAATATAGT 58.115 36.000 0.00 0.00 0.00 2.12
194 195 7.442364 ACATCTTGTCCGAACCATTGAATATAG 59.558 37.037 0.00 0.00 0.00 1.31
195 196 7.279615 ACATCTTGTCCGAACCATTGAATATA 58.720 34.615 0.00 0.00 0.00 0.86
196 197 6.122277 ACATCTTGTCCGAACCATTGAATAT 58.878 36.000 0.00 0.00 0.00 1.28
197 198 5.496556 ACATCTTGTCCGAACCATTGAATA 58.503 37.500 0.00 0.00 0.00 1.75
198 199 4.335416 ACATCTTGTCCGAACCATTGAAT 58.665 39.130 0.00 0.00 0.00 2.57
199 200 3.750371 ACATCTTGTCCGAACCATTGAA 58.250 40.909 0.00 0.00 0.00 2.69
200 201 3.417069 ACATCTTGTCCGAACCATTGA 57.583 42.857 0.00 0.00 0.00 2.57
201 202 4.253685 AGTACATCTTGTCCGAACCATTG 58.746 43.478 0.00 0.00 0.00 2.82
202 203 4.553330 AGTACATCTTGTCCGAACCATT 57.447 40.909 0.00 0.00 0.00 3.16
203 204 4.553330 AAGTACATCTTGTCCGAACCAT 57.447 40.909 0.00 0.00 34.77 3.55
204 205 5.670792 ATAAGTACATCTTGTCCGAACCA 57.329 39.130 0.00 0.00 37.56 3.67
205 206 9.189723 GTATTATAAGTACATCTTGTCCGAACC 57.810 37.037 0.00 0.00 37.56 3.62
206 207 9.962783 AGTATTATAAGTACATCTTGTCCGAAC 57.037 33.333 0.00 0.00 37.56 3.95
208 209 9.961265 CAAGTATTATAAGTACATCTTGTCCGA 57.039 33.333 0.00 0.00 37.56 4.55
209 210 8.700644 GCAAGTATTATAAGTACATCTTGTCCG 58.299 37.037 0.00 0.00 37.56 4.79
210 211 8.989980 GGCAAGTATTATAAGTACATCTTGTCC 58.010 37.037 0.00 0.00 37.56 4.02
211 212 9.765795 AGGCAAGTATTATAAGTACATCTTGTC 57.234 33.333 0.00 0.00 37.56 3.18
212 213 9.765795 GAGGCAAGTATTATAAGTACATCTTGT 57.234 33.333 0.00 0.00 37.56 3.16
213 214 9.764363 TGAGGCAAGTATTATAAGTACATCTTG 57.236 33.333 0.00 0.00 37.56 3.02
215 216 9.935241 CATGAGGCAAGTATTATAAGTACATCT 57.065 33.333 0.00 0.00 0.00 2.90
216 217 9.712305 ACATGAGGCAAGTATTATAAGTACATC 57.288 33.333 0.00 0.00 0.00 3.06
229 230 9.573166 AGCATTTATAAATACATGAGGCAAGTA 57.427 29.630 10.34 0.00 0.00 2.24
230 231 8.469309 AGCATTTATAAATACATGAGGCAAGT 57.531 30.769 10.34 0.00 0.00 3.16
231 232 9.831737 GTAGCATTTATAAATACATGAGGCAAG 57.168 33.333 10.34 0.00 0.00 4.01
232 233 9.573166 AGTAGCATTTATAAATACATGAGGCAA 57.427 29.630 10.34 0.00 0.00 4.52
233 234 9.219603 GAGTAGCATTTATAAATACATGAGGCA 57.780 33.333 10.34 0.00 0.00 4.75
234 235 8.669243 GGAGTAGCATTTATAAATACATGAGGC 58.331 37.037 10.34 8.07 0.00 4.70
235 236 9.167311 GGGAGTAGCATTTATAAATACATGAGG 57.833 37.037 10.34 0.00 0.00 3.86
236 237 9.950496 AGGGAGTAGCATTTATAAATACATGAG 57.050 33.333 10.34 0.00 0.00 2.90
237 238 9.944376 GAGGGAGTAGCATTTATAAATACATGA 57.056 33.333 10.34 0.00 0.00 3.07
238 239 9.167311 GGAGGGAGTAGCATTTATAAATACATG 57.833 37.037 10.34 1.63 0.00 3.21
239 240 8.890472 TGGAGGGAGTAGCATTTATAAATACAT 58.110 33.333 10.34 2.96 0.00 2.29
240 241 8.270137 TGGAGGGAGTAGCATTTATAAATACA 57.730 34.615 10.34 0.00 0.00 2.29
291 292 9.154847 AGATGTTTTTCTAATTTTGCATAAGGC 57.845 29.630 0.00 0.00 45.13 4.35
363 371 9.139734 AGATGCAGTTTTATTGTCATCCATAAT 57.860 29.630 0.00 0.00 33.50 1.28
366 374 7.776969 AGTAGATGCAGTTTTATTGTCATCCAT 59.223 33.333 0.00 0.00 33.50 3.41
368 376 7.559590 AGTAGATGCAGTTTTATTGTCATCC 57.440 36.000 0.00 0.00 33.50 3.51
376 384 7.604164 CGGATGGAATAGTAGATGCAGTTTTAT 59.396 37.037 0.00 0.00 0.00 1.40
377 385 6.929049 CGGATGGAATAGTAGATGCAGTTTTA 59.071 38.462 0.00 0.00 0.00 1.52
381 389 3.306364 GCGGATGGAATAGTAGATGCAGT 60.306 47.826 0.00 0.00 0.00 4.40
382 390 3.257393 GCGGATGGAATAGTAGATGCAG 58.743 50.000 0.00 0.00 0.00 4.41
383 391 2.028112 GGCGGATGGAATAGTAGATGCA 60.028 50.000 0.00 0.00 0.00 3.96
384 392 2.622436 GGCGGATGGAATAGTAGATGC 58.378 52.381 0.00 0.00 0.00 3.91
385 393 2.093447 GGGGCGGATGGAATAGTAGATG 60.093 54.545 0.00 0.00 0.00 2.90
386 394 2.188817 GGGGCGGATGGAATAGTAGAT 58.811 52.381 0.00 0.00 0.00 1.98
387 395 1.132977 TGGGGCGGATGGAATAGTAGA 60.133 52.381 0.00 0.00 0.00 2.59
388 396 1.348064 TGGGGCGGATGGAATAGTAG 58.652 55.000 0.00 0.00 0.00 2.57
389 397 2.038863 ATGGGGCGGATGGAATAGTA 57.961 50.000 0.00 0.00 0.00 1.82
390 398 2.038863 TATGGGGCGGATGGAATAGT 57.961 50.000 0.00 0.00 0.00 2.12
391 399 3.652057 ATTATGGGGCGGATGGAATAG 57.348 47.619 0.00 0.00 0.00 1.73
398 406 4.654262 ACGATCTTATATTATGGGGCGGAT 59.346 41.667 0.00 0.00 0.00 4.18
402 410 8.732746 AATTACACGATCTTATATTATGGGGC 57.267 34.615 0.00 0.00 0.00 5.80
410 418 8.383318 AGCTTGCAAATTACACGATCTTATAT 57.617 30.769 0.00 0.00 0.00 0.86
412 420 6.683974 AGCTTGCAAATTACACGATCTTAT 57.316 33.333 0.00 0.00 0.00 1.73
413 421 7.603963 TTAGCTTGCAAATTACACGATCTTA 57.396 32.000 0.00 0.00 0.00 2.10
414 422 6.494893 TTAGCTTGCAAATTACACGATCTT 57.505 33.333 0.00 0.00 0.00 2.40
416 424 7.740519 ATTTTAGCTTGCAAATTACACGATC 57.259 32.000 0.00 0.00 0.00 3.69
417 425 9.801873 ATAATTTTAGCTTGCAAATTACACGAT 57.198 25.926 15.21 0.00 37.56 3.73
418 426 9.632807 AATAATTTTAGCTTGCAAATTACACGA 57.367 25.926 15.21 2.43 37.56 4.35
480 488 6.942976 TGAAACGGGAGATCAGTTTAGTAAT 58.057 36.000 0.00 0.00 38.09 1.89
487 495 8.980481 ATATAAAATGAAACGGGAGATCAGTT 57.020 30.769 0.00 0.00 38.41 3.16
533 541 9.440784 GTACGAGAACTTCTATAATCACAAGAG 57.559 37.037 0.00 0.00 0.00 2.85
535 543 7.909121 ACGTACGAGAACTTCTATAATCACAAG 59.091 37.037 24.41 0.00 0.00 3.16
553 561 3.579147 TTTGAAGTTTGCACGTACGAG 57.421 42.857 24.41 16.14 0.00 4.18
554 562 4.337985 TTTTTGAAGTTTGCACGTACGA 57.662 36.364 24.41 0.00 0.00 3.43
607 615 6.443849 ACTTTAAAGGTATGGGATGAGAGACA 59.556 38.462 19.14 0.00 0.00 3.41
608 616 6.890293 ACTTTAAAGGTATGGGATGAGAGAC 58.110 40.000 19.14 0.00 0.00 3.36
668 685 9.630098 AAATTGCACTAGACTTCATTTTATGTG 57.370 29.630 0.00 0.00 0.00 3.21
675 692 9.013229 TCATGTTAAATTGCACTAGACTTCATT 57.987 29.630 0.00 0.00 0.00 2.57
720 737 2.738135 TGTATGTCCATACGATGCACG 58.262 47.619 11.65 7.07 44.97 5.34
762 781 2.293399 CGATCGTGTCCATGGTATCTGA 59.707 50.000 12.58 5.33 0.00 3.27
831 887 1.410882 GCTGGCCCGCCATTTTATTTA 59.589 47.619 9.27 0.00 46.15 1.40
855 914 0.389817 GATGTGGCTGTCGCTGTACA 60.390 55.000 0.00 0.00 36.09 2.90
858 917 2.046892 GGATGTGGCTGTCGCTGT 60.047 61.111 0.00 0.00 36.09 4.40
868 927 7.295322 ACGATATATAGATGGATGGATGTGG 57.705 40.000 0.00 0.00 0.00 4.17
893 956 7.040617 CGTCTGGTTAGGACATAGTACATACAT 60.041 40.741 0.00 0.00 33.73 2.29
895 958 6.484643 TCGTCTGGTTAGGACATAGTACATAC 59.515 42.308 0.00 0.00 33.73 2.39
897 960 5.443283 TCGTCTGGTTAGGACATAGTACAT 58.557 41.667 0.00 0.00 33.73 2.29
898 961 4.847198 TCGTCTGGTTAGGACATAGTACA 58.153 43.478 0.00 0.00 33.73 2.90
899 962 5.007528 GTCTCGTCTGGTTAGGACATAGTAC 59.992 48.000 0.00 0.00 33.73 2.73
900 963 5.104610 AGTCTCGTCTGGTTAGGACATAGTA 60.105 44.000 0.00 0.00 33.73 1.82
901 964 3.946558 GTCTCGTCTGGTTAGGACATAGT 59.053 47.826 0.00 0.00 33.73 2.12
902 965 4.200874 AGTCTCGTCTGGTTAGGACATAG 58.799 47.826 0.00 0.00 33.73 2.23
913 976 5.168569 TGCTGTTTAATTAGTCTCGTCTGG 58.831 41.667 0.00 0.00 0.00 3.86
931 994 4.700213 AGCTATGGAAATTAACGTTGCTGT 59.300 37.500 11.99 0.00 34.33 4.40
934 997 5.007724 AGCTAGCTATGGAAATTAACGTTGC 59.992 40.000 17.69 1.08 0.00 4.17
939 1002 9.936759 AGAAGATAGCTAGCTATGGAAATTAAC 57.063 33.333 36.08 20.27 39.15 2.01
942 1007 7.236432 TGGAGAAGATAGCTAGCTATGGAAATT 59.764 37.037 36.08 22.43 39.15 1.82
943 1008 6.728164 TGGAGAAGATAGCTAGCTATGGAAAT 59.272 38.462 36.08 17.63 39.15 2.17
973 1039 2.777972 CGACGGCCGGGTTAGATGA 61.778 63.158 31.76 0.00 33.91 2.92
1058 1124 0.390860 ACTAGCAGAATAGCAGGCCG 59.609 55.000 0.00 0.00 36.85 6.13
1068 1134 1.674441 CGATACGGTGGACTAGCAGAA 59.326 52.381 0.00 0.00 0.00 3.02
1070 1136 0.317938 GCGATACGGTGGACTAGCAG 60.318 60.000 0.00 0.00 0.00 4.24
1071 1137 0.750546 AGCGATACGGTGGACTAGCA 60.751 55.000 0.00 0.00 35.85 3.49
1072 1138 2.031360 AGCGATACGGTGGACTAGC 58.969 57.895 0.00 0.00 35.85 3.42
1080 1146 2.102357 CAGTCGCAGCGATACGGT 59.898 61.111 22.72 0.57 38.42 4.83
1081 1147 2.655364 CCAGTCGCAGCGATACGG 60.655 66.667 22.72 17.36 38.42 4.02
1200 1287 4.109675 AATCCCCCGTCGGCAAGG 62.110 66.667 5.50 6.31 0.00 3.61
1233 1323 1.092345 GGCGGAAGAATCCAGCACTC 61.092 60.000 11.66 0.00 46.97 3.51
1481 1610 2.420129 CCTTTGTAGGCGCAAGGTATCT 60.420 50.000 10.83 0.00 33.99 1.98
1666 1804 1.202065 CGTCATGTACTGCCATGTTGC 60.202 52.381 7.51 0.00 42.29 4.17
1914 2055 0.107116 GCTCCTACTCCTCCTCGTCA 60.107 60.000 0.00 0.00 0.00 4.35
2091 2261 2.878406 TCCCTTTCTGCGTTTCTTCTTG 59.122 45.455 0.00 0.00 0.00 3.02
2125 2295 3.699025 TTTCCTTCTTTGGGGGTCTTT 57.301 42.857 0.00 0.00 0.00 2.52
2126 2296 3.699025 TTTTCCTTCTTTGGGGGTCTT 57.301 42.857 0.00 0.00 0.00 3.01
2127 2297 3.116746 ACATTTTCCTTCTTTGGGGGTCT 60.117 43.478 0.00 0.00 0.00 3.85
2128 2298 3.239449 ACATTTTCCTTCTTTGGGGGTC 58.761 45.455 0.00 0.00 0.00 4.46
2129 2299 3.344535 ACATTTTCCTTCTTTGGGGGT 57.655 42.857 0.00 0.00 0.00 4.95
2130 2300 4.156477 TGTACATTTTCCTTCTTTGGGGG 58.844 43.478 0.00 0.00 0.00 5.40
2131 2301 5.799827 TTGTACATTTTCCTTCTTTGGGG 57.200 39.130 0.00 0.00 0.00 4.96
2132 2302 7.049799 TCTTTGTACATTTTCCTTCTTTGGG 57.950 36.000 0.00 0.00 0.00 4.12
2133 2303 7.538678 CGATCTTTGTACATTTTCCTTCTTTGG 59.461 37.037 0.00 0.00 0.00 3.28
2134 2304 7.061094 GCGATCTTTGTACATTTTCCTTCTTTG 59.939 37.037 0.00 0.00 0.00 2.77
2135 2305 7.084486 GCGATCTTTGTACATTTTCCTTCTTT 58.916 34.615 0.00 0.00 0.00 2.52
2136 2306 6.349363 GGCGATCTTTGTACATTTTCCTTCTT 60.349 38.462 0.00 0.00 0.00 2.52
2137 2307 5.123979 GGCGATCTTTGTACATTTTCCTTCT 59.876 40.000 0.00 0.00 0.00 2.85
2138 2308 5.123979 AGGCGATCTTTGTACATTTTCCTTC 59.876 40.000 0.00 0.00 0.00 3.46
2139 2309 5.010282 AGGCGATCTTTGTACATTTTCCTT 58.990 37.500 0.00 0.00 0.00 3.36
2140 2310 4.589908 AGGCGATCTTTGTACATTTTCCT 58.410 39.130 0.00 0.00 0.00 3.36
2141 2311 4.394920 TGAGGCGATCTTTGTACATTTTCC 59.605 41.667 0.00 0.00 0.00 3.13
2142 2312 5.545658 TGAGGCGATCTTTGTACATTTTC 57.454 39.130 0.00 0.00 0.00 2.29
2143 2313 5.220662 CGATGAGGCGATCTTTGTACATTTT 60.221 40.000 0.00 0.00 0.00 1.82
2144 2314 4.271049 CGATGAGGCGATCTTTGTACATTT 59.729 41.667 0.00 0.00 0.00 2.32
2145 2315 3.804325 CGATGAGGCGATCTTTGTACATT 59.196 43.478 0.00 0.00 0.00 2.71
2146 2316 3.384668 CGATGAGGCGATCTTTGTACAT 58.615 45.455 0.00 0.00 0.00 2.29
2147 2317 2.809446 CGATGAGGCGATCTTTGTACA 58.191 47.619 0.00 0.00 0.00 2.90
2148 2318 1.523095 GCGATGAGGCGATCTTTGTAC 59.477 52.381 0.00 0.00 0.00 2.90
2149 2319 1.538204 GGCGATGAGGCGATCTTTGTA 60.538 52.381 0.00 0.00 35.04 2.41
2150 2320 0.811616 GGCGATGAGGCGATCTTTGT 60.812 55.000 0.00 0.00 35.04 2.83
2151 2321 1.937391 GGCGATGAGGCGATCTTTG 59.063 57.895 0.00 0.00 35.04 2.77
2152 2322 4.445699 GGCGATGAGGCGATCTTT 57.554 55.556 0.00 0.00 35.04 2.52
2159 2329 0.392336 AGAAGATCAGGCGATGAGGC 59.608 55.000 0.00 0.00 42.53 4.70
2160 2330 2.102084 TGAAGAAGATCAGGCGATGAGG 59.898 50.000 0.00 0.00 42.53 3.86
2161 2331 3.122297 GTGAAGAAGATCAGGCGATGAG 58.878 50.000 0.00 0.00 42.53 2.90
2162 2332 2.762887 AGTGAAGAAGATCAGGCGATGA 59.237 45.455 0.00 0.00 43.70 2.92
2163 2333 3.122297 GAGTGAAGAAGATCAGGCGATG 58.878 50.000 0.00 0.00 29.66 3.84
2164 2334 2.102252 GGAGTGAAGAAGATCAGGCGAT 59.898 50.000 0.00 0.00 33.31 4.58
2165 2335 1.478510 GGAGTGAAGAAGATCAGGCGA 59.521 52.381 0.00 0.00 0.00 5.54
2166 2336 1.800655 CGGAGTGAAGAAGATCAGGCG 60.801 57.143 0.00 0.00 0.00 5.52
2167 2337 1.205893 ACGGAGTGAAGAAGATCAGGC 59.794 52.381 0.00 0.00 42.51 4.85
2192 2362 2.784889 TAGTGTGGTTAACGGCCGCC 62.785 60.000 28.58 19.34 35.76 6.13
2193 2363 1.356527 CTAGTGTGGTTAACGGCCGC 61.357 60.000 28.58 8.81 37.06 6.53
2194 2364 1.356527 GCTAGTGTGGTTAACGGCCG 61.357 60.000 26.86 26.86 0.00 6.13
2195 2365 0.320946 TGCTAGTGTGGTTAACGGCC 60.321 55.000 0.00 0.00 0.00 6.13
2196 2366 1.463444 CTTGCTAGTGTGGTTAACGGC 59.537 52.381 0.00 0.00 0.00 5.68
2197 2367 2.762745 ACTTGCTAGTGTGGTTAACGG 58.237 47.619 0.00 0.00 31.99 4.44
2198 2368 3.606153 GCAACTTGCTAGTGTGGTTAACG 60.606 47.826 6.50 0.00 40.96 3.18
2199 2369 3.885358 GCAACTTGCTAGTGTGGTTAAC 58.115 45.455 6.50 0.00 40.96 2.01
2222 2724 7.867403 CCACCAAAATACTTGATAATATGCACC 59.133 37.037 0.00 0.00 0.00 5.01
2242 2744 4.103153 CCTCTATCATCTTTAGCCCACCAA 59.897 45.833 0.00 0.00 0.00 3.67
2244 2746 3.558109 GCCTCTATCATCTTTAGCCCACC 60.558 52.174 0.00 0.00 0.00 4.61
2253 2755 4.223700 TGAAGTGTGTGCCTCTATCATCTT 59.776 41.667 0.00 0.00 0.00 2.40
2255 2757 4.118410 CTGAAGTGTGTGCCTCTATCATC 58.882 47.826 0.00 0.00 0.00 2.92
2256 2758 3.771479 TCTGAAGTGTGTGCCTCTATCAT 59.229 43.478 0.00 0.00 0.00 2.45
2257 2759 3.165071 TCTGAAGTGTGTGCCTCTATCA 58.835 45.455 0.00 0.00 0.00 2.15
2258 2760 3.876274 TCTGAAGTGTGTGCCTCTATC 57.124 47.619 0.00 0.00 0.00 2.08
2266 2768 6.111382 ACAATGATAGGATCTGAAGTGTGTG 58.889 40.000 0.00 0.00 0.00 3.82
2275 2777 8.146412 TGAGTACAATGACAATGATAGGATCTG 58.854 37.037 0.00 0.00 0.00 2.90
2279 2781 6.707608 GCATGAGTACAATGACAATGATAGGA 59.292 38.462 11.58 0.00 0.00 2.94
2313 2822 5.078411 AGATCAACCTCACACTCATGTAC 57.922 43.478 0.00 0.00 36.72 2.90
2314 2823 6.238759 CGATAGATCAACCTCACACTCATGTA 60.239 42.308 0.00 0.00 35.76 2.29
2315 2824 5.451103 CGATAGATCAACCTCACACTCATGT 60.451 44.000 0.00 0.00 37.86 3.21
2316 2825 4.981054 CGATAGATCAACCTCACACTCATG 59.019 45.833 0.00 0.00 39.76 3.07
2329 2838 3.491342 AGACTAGCTGCCGATAGATCAA 58.509 45.455 7.46 0.00 33.45 2.57
2333 2842 4.912586 AGATTAGACTAGCTGCCGATAGA 58.087 43.478 7.46 0.00 33.45 1.98
2359 2868 6.183360 GCTGGGATATACCTATGATGAGACAG 60.183 46.154 5.33 0.00 38.98 3.51
2422 2931 3.436704 CACAACACACTTGATAAGCGGAT 59.563 43.478 0.00 0.00 0.00 4.18
2425 2934 3.544651 CACACAACACACTTGATAAGCG 58.455 45.455 0.00 0.00 0.00 4.68
2572 3166 5.758296 TGATTCTTAATAGTGTTCCGCCATC 59.242 40.000 0.00 0.00 0.00 3.51
2645 3239 6.327386 AGATTAACAGAAGGGCCAATAAGA 57.673 37.500 6.18 0.00 0.00 2.10
2758 3352 4.527816 CCCATCCCATCTTTGTTTTCTTGA 59.472 41.667 0.00 0.00 0.00 3.02
2801 3395 7.737972 TTGTCAAAACCGAGAATAAAGATGA 57.262 32.000 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.