Multiple sequence alignment - TraesCS7D01G531900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G531900 chr7D 100.000 3984 0 0 1 3984 626053566 626049583 0.000000e+00 7358
1 TraesCS7D01G531900 chr7D 89.371 668 60 9 1856 2514 626031036 626030371 0.000000e+00 830
2 TraesCS7D01G531900 chr7D 82.394 142 13 4 1339 1478 626031474 626031343 3.250000e-21 113
3 TraesCS7D01G531900 chr7B 92.188 2445 136 11 734 3162 725852829 725855234 0.000000e+00 3406
4 TraesCS7D01G531900 chr7B 85.569 492 34 11 3163 3640 725855171 725855639 7.740000e-132 481
5 TraesCS7D01G531900 chr7A 93.348 1819 70 16 1264 3065 721587414 721585630 0.000000e+00 2641
6 TraesCS7D01G531900 chr7A 93.348 1819 70 16 1264 3065 721662068 721660284 0.000000e+00 2641
7 TraesCS7D01G531900 chr7A 96.188 1233 38 7 1 1233 721663293 721662070 0.000000e+00 2008
8 TraesCS7D01G531900 chr7A 96.107 1233 39 7 1 1233 721588639 721587416 0.000000e+00 2002
9 TraesCS7D01G531900 chr1D 87.022 1202 114 26 1974 3157 25956482 25955305 0.000000e+00 1317
10 TraesCS7D01G531900 chr1D 85.226 731 97 10 2002 2725 452346888 452347614 0.000000e+00 741
11 TraesCS7D01G531900 chr1D 85.494 324 28 9 901 1216 25957760 25957448 1.790000e-83 320
12 TraesCS7D01G531900 chr1A 86.772 1202 127 15 1967 3152 27259658 27260843 0.000000e+00 1310
13 TraesCS7D01G531900 chr1A 86.944 337 27 12 875 1200 27258285 27258615 2.930000e-96 363
14 TraesCS7D01G531900 chr1B 86.235 1206 131 21 1973 3161 41642885 41641698 0.000000e+00 1275
15 TraesCS7D01G531900 chr1B 91.286 241 13 4 959 1199 41644239 41644007 4.970000e-84 322
16 TraesCS7D01G531900 chr1B 88.971 136 15 0 993 1128 6016023 6016158 6.850000e-38 169
17 TraesCS7D01G531900 chr3D 84.298 726 114 0 2002 2727 607667244 607666519 0.000000e+00 710
18 TraesCS7D01G531900 chr3D 89.103 156 17 0 2829 2984 607665949 607665794 1.130000e-45 195
19 TraesCS7D01G531900 chr6D 93.627 204 12 1 995 1198 425870796 425870998 1.800000e-78 303
20 TraesCS7D01G531900 chr3B 97.500 80 2 0 997 1076 739452693 739452614 1.930000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G531900 chr7D 626049583 626053566 3983 True 7358.0 7358 100.0000 1 3984 1 chr7D.!!$R1 3983
1 TraesCS7D01G531900 chr7D 626030371 626031474 1103 True 471.5 830 85.8825 1339 2514 2 chr7D.!!$R2 1175
2 TraesCS7D01G531900 chr7B 725852829 725855639 2810 False 1943.5 3406 88.8785 734 3640 2 chr7B.!!$F1 2906
3 TraesCS7D01G531900 chr7A 721660284 721663293 3009 True 2324.5 2641 94.7680 1 3065 2 chr7A.!!$R2 3064
4 TraesCS7D01G531900 chr7A 721585630 721588639 3009 True 2321.5 2641 94.7275 1 3065 2 chr7A.!!$R1 3064
5 TraesCS7D01G531900 chr1D 25955305 25957760 2455 True 818.5 1317 86.2580 901 3157 2 chr1D.!!$R1 2256
6 TraesCS7D01G531900 chr1D 452346888 452347614 726 False 741.0 741 85.2260 2002 2725 1 chr1D.!!$F1 723
7 TraesCS7D01G531900 chr1A 27258285 27260843 2558 False 836.5 1310 86.8580 875 3152 2 chr1A.!!$F1 2277
8 TraesCS7D01G531900 chr1B 41641698 41644239 2541 True 798.5 1275 88.7605 959 3161 2 chr1B.!!$R1 2202
9 TraesCS7D01G531900 chr3D 607665794 607667244 1450 True 452.5 710 86.7005 2002 2984 2 chr3D.!!$R1 982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
493 494 1.042229 TTGCAGCCTTCACAAATGCT 58.958 45.000 0.00 0.0 36.89 3.79 F
706 707 3.118665 GCCAACCATAGGTTCGGTACTAA 60.119 47.826 14.49 0.0 43.05 2.24 F
1874 2262 0.958822 ATGCGTGTTGGTTTTCCTCC 59.041 50.000 0.00 0.0 41.38 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 2236 1.107114 AACCAACACGCATGACCAAA 58.893 45.000 0.0 0.0 0.00 3.28 R
1983 2694 1.147817 AGGTTCCCTTGCCTGTCAATT 59.852 47.619 0.0 0.0 33.57 2.32 R
3797 5003 0.034574 TGCGGGGCATGTAATCAAGT 60.035 50.000 0.0 0.0 31.71 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 8.059798 AAGATGAACTTAATAAGCAATGTGCT 57.940 30.769 0.00 0.00 46.18 4.40
220 221 8.598075 GTTTAAATTGAATGAGCCAATGATCAC 58.402 33.333 0.00 0.00 40.21 3.06
273 274 1.343884 ACTTCCCCTGCTAGCTCATCT 60.344 52.381 17.23 0.00 0.00 2.90
279 280 3.135530 CCCCTGCTAGCTCATCTTTAAGT 59.864 47.826 17.23 0.00 0.00 2.24
336 337 8.651391 TTAGTTTTCAGAACAAAGTATCACGA 57.349 30.769 0.00 0.00 0.00 4.35
348 349 8.716646 ACAAAGTATCACGACATCATTATCAA 57.283 30.769 0.00 0.00 0.00 2.57
388 389 2.082231 CTTGCAGAGGATGACACCTTG 58.918 52.381 0.00 0.00 40.73 3.61
393 394 4.125703 GCAGAGGATGACACCTTGAATAG 58.874 47.826 0.00 0.00 40.73 1.73
419 420 6.441093 TCAGATGCAAGTTGGCTTATTAAG 57.559 37.500 4.75 0.00 32.87 1.85
444 445 9.468532 AGCTTTAATTTGCTCAGAAAGTAAAAG 57.531 29.630 0.00 0.00 41.95 2.27
493 494 1.042229 TTGCAGCCTTCACAAATGCT 58.958 45.000 0.00 0.00 36.89 3.79
571 572 6.789268 TGAATTCATAAAGAGGGAGGACAAA 58.211 36.000 3.38 0.00 0.00 2.83
574 575 8.670521 AATTCATAAAGAGGGAGGACAAAAAT 57.329 30.769 0.00 0.00 0.00 1.82
586 587 5.308825 GAGGACAAAAATCACTCTTCCTCA 58.691 41.667 9.40 0.00 44.80 3.86
627 628 5.833131 AGGTAAAGCAGGAGTTTCAATTCAA 59.167 36.000 0.00 0.00 0.00 2.69
633 634 7.288810 AGCAGGAGTTTCAATTCAAAACATA 57.711 32.000 12.95 0.00 38.73 2.29
682 683 8.303156 TGTTAACATGAATTGGTGTTAGAATGG 58.697 33.333 3.59 0.00 40.63 3.16
706 707 3.118665 GCCAACCATAGGTTCGGTACTAA 60.119 47.826 14.49 0.00 43.05 2.24
707 708 4.443881 GCCAACCATAGGTTCGGTACTAAT 60.444 45.833 14.49 0.00 43.05 1.73
708 709 5.054477 CCAACCATAGGTTCGGTACTAATG 58.946 45.833 0.00 0.00 43.05 1.90
709 710 4.332428 ACCATAGGTTCGGTACTAATGC 57.668 45.455 0.00 0.00 32.31 3.56
753 754 8.831000 ACGTTAAATACACTTTGACTTGTTTC 57.169 30.769 0.00 0.00 0.00 2.78
1240 1275 3.325201 GATCGCCGACCCCCAAACT 62.325 63.158 0.00 0.00 0.00 2.66
1255 1290 3.245407 CCCAAACTCCCAATCTTCTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
1505 1777 6.095720 AGTTTCGTCAGGTTAATTTTGGTTCA 59.904 34.615 0.00 0.00 0.00 3.18
1630 1939 3.250744 TGTGATCAGTTCCGAAATCGTC 58.749 45.455 0.00 0.00 37.74 4.20
1736 2066 8.542497 AAGAACTATTATTGCGTGTCTTTACA 57.458 30.769 0.00 0.00 0.00 2.41
1739 2069 7.757097 ACTATTATTGCGTGTCTTTACAGAG 57.243 36.000 0.00 0.00 35.91 3.35
1825 2208 5.501156 TGGTTTTGCCCTGTTGTTTTAATT 58.499 33.333 0.00 0.00 36.04 1.40
1874 2262 0.958822 ATGCGTGTTGGTTTTCCTCC 59.041 50.000 0.00 0.00 41.38 4.30
2041 2752 0.178873 AGGCCACCAAGGAGAAGGTA 60.179 55.000 5.01 0.00 41.22 3.08
2747 3462 8.675040 GTAAGGAATTCATTACTGAAACAAGC 57.325 34.615 27.41 5.26 44.29 4.01
2756 3471 7.307989 TTCATTACTGAAACAAGCTCTACTTGC 60.308 37.037 5.37 0.00 46.17 4.01
2776 3499 1.069022 CCATTGTGTTGTGCTTCTCCG 60.069 52.381 0.00 0.00 0.00 4.63
2793 3550 6.449635 TTCTCCGAAAATTAATCCATGGTG 57.550 37.500 12.58 0.00 0.00 4.17
2839 4022 3.769739 ATGTCTTATTGCAGCCCGATA 57.230 42.857 0.00 0.00 0.00 2.92
2985 4169 2.124695 CTTCGCCCCCAACTAGGC 60.125 66.667 0.00 0.00 46.17 3.93
3002 4186 1.438399 GCCCATTCATTGCGCATCA 59.562 52.632 12.75 0.00 0.00 3.07
3037 4221 9.468532 CCTTAGGCAGAAATCAATAAATTTAGC 57.531 33.333 3.94 0.00 32.88 3.09
3050 4245 7.613801 TCAATAAATTTAGCTAGGCTTTGACCA 59.386 33.333 3.94 0.00 40.44 4.02
3051 4246 5.644977 AAATTTAGCTAGGCTTTGACCAC 57.355 39.130 0.00 0.00 40.44 4.16
3068 4268 1.338337 CCACGAGTCTGTCAGTTGAGT 59.662 52.381 0.00 0.00 0.00 3.41
3070 4270 3.448686 CACGAGTCTGTCAGTTGAGTTT 58.551 45.455 0.00 0.00 0.00 2.66
3114 4314 6.017026 CACCTCTGCGACATCTATCTTAGTTA 60.017 42.308 0.00 0.00 0.00 2.24
3124 4324 4.627015 TCTATCTTAGTTACCCCTGGCAA 58.373 43.478 0.00 0.00 0.00 4.52
3147 4347 1.390123 CAGAATGTTAGTGCCACGTCG 59.610 52.381 0.00 0.00 0.00 5.12
3162 4362 4.493545 GCCACGTCGTCATTAGTTAAATGG 60.494 45.833 0.00 0.00 44.42 3.16
3163 4363 4.865925 CCACGTCGTCATTAGTTAAATGGA 59.134 41.667 0.00 0.00 44.42 3.41
3164 4364 5.220340 CCACGTCGTCATTAGTTAAATGGAC 60.220 44.000 0.00 0.00 44.42 4.02
3165 4365 5.346551 CACGTCGTCATTAGTTAAATGGACA 59.653 40.000 0.00 0.00 44.42 4.02
3166 4366 6.035650 CACGTCGTCATTAGTTAAATGGACAT 59.964 38.462 0.00 0.00 44.42 3.06
3167 4367 6.255020 ACGTCGTCATTAGTTAAATGGACATC 59.745 38.462 0.00 0.00 44.42 3.06
3168 4368 6.475727 CGTCGTCATTAGTTAAATGGACATCT 59.524 38.462 0.00 0.00 44.42 2.90
3169 4369 7.646526 CGTCGTCATTAGTTAAATGGACATCTA 59.353 37.037 0.00 0.00 44.42 1.98
3170 4370 9.477484 GTCGTCATTAGTTAAATGGACATCTAT 57.523 33.333 0.00 0.00 44.42 1.98
3171 4371 9.692749 TCGTCATTAGTTAAATGGACATCTATC 57.307 33.333 0.00 0.00 44.42 2.08
3172 4372 9.698309 CGTCATTAGTTAAATGGACATCTATCT 57.302 33.333 0.00 0.00 44.42 1.98
3179 4379 9.331282 AGTTAAATGGACATCTATCTTAGTTGC 57.669 33.333 0.00 0.00 0.00 4.17
3180 4380 8.560374 GTTAAATGGACATCTATCTTAGTTGCC 58.440 37.037 0.00 0.00 0.00 4.52
3181 4381 4.689612 TGGACATCTATCTTAGTTGCCC 57.310 45.455 0.00 0.00 31.15 5.36
3182 4382 3.391296 TGGACATCTATCTTAGTTGCCCC 59.609 47.826 0.00 0.00 29.89 5.80
3183 4383 3.648545 GGACATCTATCTTAGTTGCCCCT 59.351 47.826 0.00 0.00 0.00 4.79
3184 4384 4.103311 GGACATCTATCTTAGTTGCCCCTT 59.897 45.833 0.00 0.00 0.00 3.95
3185 4385 5.041191 ACATCTATCTTAGTTGCCCCTTG 57.959 43.478 0.00 0.00 0.00 3.61
3186 4386 3.560636 TCTATCTTAGTTGCCCCTTGC 57.439 47.619 0.00 0.00 41.77 4.01
3195 4395 4.500265 GCCCCTTGCAGAACAGAA 57.500 55.556 0.00 0.00 40.77 3.02
3196 4396 2.967270 GCCCCTTGCAGAACAGAAT 58.033 52.632 0.00 0.00 40.77 2.40
3197 4397 0.529378 GCCCCTTGCAGAACAGAATG 59.471 55.000 0.00 0.00 40.98 2.67
3199 4399 4.287186 GCCCCTTGCAGAACAGAATGTG 62.287 54.545 0.00 0.00 45.93 3.21
3215 4415 2.778187 TGTGTGTCACGTCGTCATTA 57.222 45.000 0.00 0.00 37.14 1.90
3237 4437 8.693504 CATTAGTTAAATGAGTGTTTGTTGCTG 58.306 33.333 0.00 0.00 46.81 4.41
3249 4449 0.249868 TGTTGCTGGTCTCAGAACCG 60.250 55.000 0.00 0.00 43.49 4.44
3276 4477 4.503910 TGCAATCGATCCTTATATTCGGG 58.496 43.478 0.00 0.00 33.82 5.14
3289 4490 6.320164 CCTTATATTCGGGTGAAATGGTTTGA 59.680 38.462 0.00 0.00 37.71 2.69
3299 4500 4.339814 GTGAAATGGTTTGACCCTGTGTTA 59.660 41.667 0.00 0.00 37.50 2.41
3311 4515 7.838079 TGACCCTGTGTTACTTTAGTTACTA 57.162 36.000 1.39 0.00 0.00 1.82
3404 4608 2.912956 TCTTGTTCCTGCTTGGTAGGAT 59.087 45.455 5.29 0.00 43.48 3.24
3405 4609 3.055094 TCTTGTTCCTGCTTGGTAGGATC 60.055 47.826 5.29 5.69 43.48 3.36
3407 4611 3.719871 TGTTCCTGCTTGGTAGGATCTA 58.280 45.455 5.29 0.00 43.48 1.98
3409 4613 3.689872 TCCTGCTTGGTAGGATCTACT 57.310 47.619 0.37 0.00 39.41 2.57
3417 4621 5.938125 GCTTGGTAGGATCTACTGTTTTGAA 59.062 40.000 5.26 0.00 0.00 2.69
3422 4626 7.393234 TGGTAGGATCTACTGTTTTGAATTTGG 59.607 37.037 5.26 0.00 0.00 3.28
3471 4677 2.547218 GGAAAAAGGCCCTTTCGTTTCC 60.547 50.000 18.02 18.02 33.59 3.13
3474 4680 0.826256 AAGGCCCTTTCGTTTCCACC 60.826 55.000 0.00 0.00 0.00 4.61
3506 4712 7.039784 TCACAGCCTTTCAGCTAAAAATTGTAT 60.040 33.333 0.00 0.00 42.61 2.29
3507 4713 8.243426 CACAGCCTTTCAGCTAAAAATTGTATA 58.757 33.333 0.00 0.00 42.61 1.47
3516 4722 8.893727 TCAGCTAAAAATTGTATAAGGCTCTTC 58.106 33.333 0.00 0.00 0.00 2.87
3529 4735 1.739067 GCTCTTCGCCACCTAAACAT 58.261 50.000 0.00 0.00 0.00 2.71
3603 4809 3.066190 CTACGTGTCGCCCTCCCA 61.066 66.667 0.00 0.00 0.00 4.37
3630 4836 2.681848 CAGATCAGCAAGGATCAACACC 59.318 50.000 13.34 0.00 44.89 4.16
3647 4853 2.795231 ACCATGGGTGATGAGTGAAG 57.205 50.000 18.09 0.00 32.98 3.02
3648 4854 2.269023 ACCATGGGTGATGAGTGAAGA 58.731 47.619 18.09 0.00 32.98 2.87
3649 4855 2.644299 ACCATGGGTGATGAGTGAAGAA 59.356 45.455 18.09 0.00 32.98 2.52
3650 4856 3.267812 ACCATGGGTGATGAGTGAAGAAT 59.732 43.478 18.09 0.00 32.98 2.40
3651 4857 3.630769 CCATGGGTGATGAGTGAAGAATG 59.369 47.826 2.85 0.00 33.31 2.67
3652 4858 2.715046 TGGGTGATGAGTGAAGAATGC 58.285 47.619 0.00 0.00 0.00 3.56
3653 4859 2.306805 TGGGTGATGAGTGAAGAATGCT 59.693 45.455 0.00 0.00 0.00 3.79
3654 4860 2.681848 GGGTGATGAGTGAAGAATGCTG 59.318 50.000 0.00 0.00 0.00 4.41
3655 4861 2.097142 GGTGATGAGTGAAGAATGCTGC 59.903 50.000 0.00 0.00 0.00 5.25
3656 4862 2.097142 GTGATGAGTGAAGAATGCTGCC 59.903 50.000 0.00 0.00 0.00 4.85
3657 4863 2.290450 TGATGAGTGAAGAATGCTGCCA 60.290 45.455 0.00 0.00 0.00 4.92
3658 4864 2.502142 TGAGTGAAGAATGCTGCCAT 57.498 45.000 0.00 0.00 0.00 4.40
3659 4865 2.799017 TGAGTGAAGAATGCTGCCATT 58.201 42.857 0.00 0.00 44.11 3.16
3660 4866 3.954200 TGAGTGAAGAATGCTGCCATTA 58.046 40.909 0.00 0.00 41.60 1.90
3661 4867 4.529897 TGAGTGAAGAATGCTGCCATTAT 58.470 39.130 0.00 0.00 41.60 1.28
3662 4868 4.577693 TGAGTGAAGAATGCTGCCATTATC 59.422 41.667 0.00 1.30 41.60 1.75
3663 4869 4.789807 AGTGAAGAATGCTGCCATTATCT 58.210 39.130 0.00 0.00 41.60 1.98
3664 4870 5.933617 AGTGAAGAATGCTGCCATTATCTA 58.066 37.500 0.00 0.00 41.60 1.98
3665 4871 6.359804 AGTGAAGAATGCTGCCATTATCTAA 58.640 36.000 0.00 0.00 41.60 2.10
3666 4872 6.830324 AGTGAAGAATGCTGCCATTATCTAAA 59.170 34.615 0.00 0.00 41.60 1.85
3667 4873 7.340232 AGTGAAGAATGCTGCCATTATCTAAAA 59.660 33.333 0.00 0.00 41.60 1.52
3668 4874 7.975616 GTGAAGAATGCTGCCATTATCTAAAAA 59.024 33.333 0.00 0.00 41.60 1.94
3690 4896 6.560253 AAAAAGACTAATACAGTGCCAGTG 57.440 37.500 0.00 0.00 37.72 3.66
3691 4897 3.252974 AGACTAATACAGTGCCAGTGC 57.747 47.619 0.00 0.00 37.72 4.40
3692 4898 2.093447 AGACTAATACAGTGCCAGTGCC 60.093 50.000 0.00 0.00 37.72 5.01
3693 4899 1.628340 ACTAATACAGTGCCAGTGCCA 59.372 47.619 0.00 0.00 35.62 4.92
3694 4900 2.283298 CTAATACAGTGCCAGTGCCAG 58.717 52.381 0.00 0.00 36.33 4.85
3695 4901 0.692476 AATACAGTGCCAGTGCCAGA 59.308 50.000 0.00 0.00 36.33 3.86
3696 4902 0.036010 ATACAGTGCCAGTGCCAGAC 60.036 55.000 0.00 0.00 36.33 3.51
3697 4903 2.434658 TACAGTGCCAGTGCCAGACG 62.435 60.000 0.00 0.00 36.33 4.18
3698 4904 3.550431 AGTGCCAGTGCCAGACGT 61.550 61.111 0.00 0.00 36.33 4.34
3699 4905 2.207229 AGTGCCAGTGCCAGACGTA 61.207 57.895 0.00 0.00 36.33 3.57
3700 4906 2.027625 GTGCCAGTGCCAGACGTAC 61.028 63.158 0.00 0.00 36.33 3.67
3701 4907 2.342279 GCCAGTGCCAGACGTACA 59.658 61.111 0.00 0.00 0.00 2.90
3702 4908 2.027625 GCCAGTGCCAGACGTACAC 61.028 63.158 0.00 0.00 34.48 2.90
3703 4909 1.733041 CCAGTGCCAGACGTACACG 60.733 63.158 0.00 0.00 46.33 4.49
3717 4923 3.973874 CGTACACGTAGCAACATTCAAG 58.026 45.455 0.00 0.00 34.11 3.02
3718 4924 3.181534 CGTACACGTAGCAACATTCAAGG 60.182 47.826 0.00 0.00 34.11 3.61
3719 4925 3.120321 ACACGTAGCAACATTCAAGGA 57.880 42.857 0.00 0.00 0.00 3.36
3720 4926 3.674997 ACACGTAGCAACATTCAAGGAT 58.325 40.909 0.00 0.00 0.00 3.24
3721 4927 4.072131 ACACGTAGCAACATTCAAGGATT 58.928 39.130 0.00 0.00 0.00 3.01
3722 4928 9.901654 CGTACACGTAGCAACATTCAAGGATTG 62.902 44.444 0.00 0.00 40.27 2.67
3760 4966 7.703328 AGTTTAATGTACAATTATCTTGCCGG 58.297 34.615 0.00 0.00 0.00 6.13
3761 4967 7.554835 AGTTTAATGTACAATTATCTTGCCGGA 59.445 33.333 5.05 0.00 0.00 5.14
3762 4968 7.490962 TTAATGTACAATTATCTTGCCGGAG 57.509 36.000 5.05 0.00 0.00 4.63
3763 4969 4.481368 TGTACAATTATCTTGCCGGAGT 57.519 40.909 5.05 0.00 0.00 3.85
3764 4970 5.601583 TGTACAATTATCTTGCCGGAGTA 57.398 39.130 5.05 0.00 0.00 2.59
3765 4971 5.353938 TGTACAATTATCTTGCCGGAGTAC 58.646 41.667 5.05 2.34 0.00 2.73
3766 4972 4.481368 ACAATTATCTTGCCGGAGTACA 57.519 40.909 5.05 0.00 0.00 2.90
3767 4973 4.442706 ACAATTATCTTGCCGGAGTACAG 58.557 43.478 5.05 0.00 0.00 2.74
3768 4974 4.161565 ACAATTATCTTGCCGGAGTACAGA 59.838 41.667 5.05 0.00 0.00 3.41
3769 4975 5.163301 ACAATTATCTTGCCGGAGTACAGAT 60.163 40.000 5.05 6.08 0.00 2.90
3770 4976 2.898729 ATCTTGCCGGAGTACAGATG 57.101 50.000 5.05 0.00 0.00 2.90
3771 4977 1.557099 TCTTGCCGGAGTACAGATGT 58.443 50.000 5.05 0.00 0.00 3.06
3772 4978 2.730382 TCTTGCCGGAGTACAGATGTA 58.270 47.619 5.05 0.00 0.00 2.29
3773 4979 3.093814 TCTTGCCGGAGTACAGATGTAA 58.906 45.455 5.05 0.00 31.52 2.41
3774 4980 3.704566 TCTTGCCGGAGTACAGATGTAAT 59.295 43.478 5.05 0.00 31.52 1.89
3775 4981 4.161565 TCTTGCCGGAGTACAGATGTAATT 59.838 41.667 5.05 0.00 31.52 1.40
3776 4982 4.481368 TGCCGGAGTACAGATGTAATTT 57.519 40.909 5.05 0.00 31.52 1.82
3777 4983 5.601583 TGCCGGAGTACAGATGTAATTTA 57.398 39.130 5.05 0.00 31.52 1.40
3778 4984 5.353938 TGCCGGAGTACAGATGTAATTTAC 58.646 41.667 5.05 0.00 31.52 2.01
3779 4985 5.128171 TGCCGGAGTACAGATGTAATTTACT 59.872 40.000 5.05 0.00 31.52 2.24
3780 4986 5.690857 GCCGGAGTACAGATGTAATTTACTC 59.309 44.000 5.05 4.85 31.34 2.59
3781 4987 5.913514 CCGGAGTACAGATGTAATTTACTCG 59.086 44.000 0.00 3.76 32.33 4.18
3782 4988 6.459298 CCGGAGTACAGATGTAATTTACTCGT 60.459 42.308 0.00 7.79 32.33 4.18
3783 4989 6.971184 CGGAGTACAGATGTAATTTACTCGTT 59.029 38.462 7.99 0.34 32.33 3.85
3784 4990 7.487189 CGGAGTACAGATGTAATTTACTCGTTT 59.513 37.037 7.99 0.00 32.33 3.60
3785 4991 9.148104 GGAGTACAGATGTAATTTACTCGTTTT 57.852 33.333 7.99 0.00 32.33 2.43
3790 4996 9.052759 ACAGATGTAATTTACTCGTTTTTGTCT 57.947 29.630 7.99 0.00 0.00 3.41
3791 4997 9.530129 CAGATGTAATTTACTCGTTTTTGTCTC 57.470 33.333 7.99 0.00 0.00 3.36
3792 4998 8.433126 AGATGTAATTTACTCGTTTTTGTCTCG 58.567 33.333 7.99 0.00 0.00 4.04
3793 4999 7.467557 TGTAATTTACTCGTTTTTGTCTCGT 57.532 32.000 7.99 0.00 0.00 4.18
3794 5000 7.558137 TGTAATTTACTCGTTTTTGTCTCGTC 58.442 34.615 7.99 0.00 0.00 4.20
3795 5001 5.587033 ATTTACTCGTTTTTGTCTCGTCC 57.413 39.130 0.00 0.00 0.00 4.79
3796 5002 1.484356 ACTCGTTTTTGTCTCGTCCG 58.516 50.000 0.00 0.00 0.00 4.79
3797 5003 1.066002 ACTCGTTTTTGTCTCGTCCGA 59.934 47.619 0.00 0.00 0.00 4.55
3798 5004 1.450905 CTCGTTTTTGTCTCGTCCGAC 59.549 52.381 0.00 0.00 34.52 4.79
3799 5005 1.066002 TCGTTTTTGTCTCGTCCGACT 59.934 47.619 0.00 0.00 35.00 4.18
3800 5006 1.856597 CGTTTTTGTCTCGTCCGACTT 59.143 47.619 0.00 0.00 35.00 3.01
3801 5007 2.347292 CGTTTTTGTCTCGTCCGACTTG 60.347 50.000 0.00 0.00 35.00 3.16
3802 5008 2.861935 GTTTTTGTCTCGTCCGACTTGA 59.138 45.455 0.00 0.00 35.00 3.02
3803 5009 3.380479 TTTTGTCTCGTCCGACTTGAT 57.620 42.857 0.00 0.00 35.00 2.57
3804 5010 3.380479 TTTGTCTCGTCCGACTTGATT 57.620 42.857 0.00 0.00 35.00 2.57
3805 5011 4.508461 TTTGTCTCGTCCGACTTGATTA 57.492 40.909 0.00 0.00 35.00 1.75
3806 5012 3.482722 TGTCTCGTCCGACTTGATTAC 57.517 47.619 0.00 0.00 35.00 1.89
3807 5013 2.815503 TGTCTCGTCCGACTTGATTACA 59.184 45.455 0.00 0.00 35.00 2.41
3808 5014 3.442625 TGTCTCGTCCGACTTGATTACAT 59.557 43.478 0.00 0.00 35.00 2.29
3809 5015 3.791887 GTCTCGTCCGACTTGATTACATG 59.208 47.826 0.00 0.00 0.00 3.21
3810 5016 2.535984 CTCGTCCGACTTGATTACATGC 59.464 50.000 0.00 0.00 0.00 4.06
3811 5017 1.593006 CGTCCGACTTGATTACATGCC 59.407 52.381 0.00 0.00 0.00 4.40
3812 5018 1.940613 GTCCGACTTGATTACATGCCC 59.059 52.381 0.00 0.00 0.00 5.36
3813 5019 1.134220 TCCGACTTGATTACATGCCCC 60.134 52.381 0.00 0.00 0.00 5.80
3814 5020 0.937304 CGACTTGATTACATGCCCCG 59.063 55.000 0.00 0.00 0.00 5.73
3815 5021 0.663153 GACTTGATTACATGCCCCGC 59.337 55.000 0.00 0.00 0.00 6.13
3816 5022 0.034574 ACTTGATTACATGCCCCGCA 60.035 50.000 0.00 0.00 44.86 5.69
3817 5023 0.664761 CTTGATTACATGCCCCGCAG 59.335 55.000 0.00 0.00 43.65 5.18
3818 5024 1.383456 TTGATTACATGCCCCGCAGC 61.383 55.000 0.00 0.00 43.65 5.25
3819 5025 2.519302 ATTACATGCCCCGCAGCC 60.519 61.111 0.00 0.00 43.65 4.85
3820 5026 3.357444 ATTACATGCCCCGCAGCCA 62.357 57.895 0.00 0.00 43.65 4.75
3821 5027 3.993614 TTACATGCCCCGCAGCCAG 62.994 63.158 0.00 0.00 43.65 4.85
3827 5033 2.825836 CCCCGCAGCCAGCTTAAG 60.826 66.667 0.00 0.00 42.61 1.85
3828 5034 3.512516 CCCGCAGCCAGCTTAAGC 61.513 66.667 20.09 20.09 42.61 3.09
3829 5035 2.747460 CCGCAGCCAGCTTAAGCA 60.747 61.111 28.39 0.00 45.16 3.91
3830 5036 2.334946 CCGCAGCCAGCTTAAGCAA 61.335 57.895 28.39 0.00 45.16 3.91
3831 5037 1.660560 CCGCAGCCAGCTTAAGCAAT 61.661 55.000 28.39 6.82 45.16 3.56
3832 5038 0.524816 CGCAGCCAGCTTAAGCAATG 60.525 55.000 28.39 18.36 45.16 2.82
3833 5039 0.804933 GCAGCCAGCTTAAGCAATGC 60.805 55.000 28.39 24.60 45.16 3.56
3834 5040 0.815734 CAGCCAGCTTAAGCAATGCT 59.184 50.000 28.39 25.95 45.16 3.79
3835 5041 1.101331 AGCCAGCTTAAGCAATGCTC 58.899 50.000 28.39 12.90 45.16 4.26
3836 5042 0.813184 GCCAGCTTAAGCAATGCTCA 59.187 50.000 28.39 0.00 45.16 4.26
3837 5043 1.202268 GCCAGCTTAAGCAATGCTCAG 60.202 52.381 28.39 9.13 45.16 3.35
3838 5044 2.089980 CCAGCTTAAGCAATGCTCAGT 58.910 47.619 28.39 2.11 45.16 3.41
3839 5045 2.159421 CCAGCTTAAGCAATGCTCAGTG 60.159 50.000 28.39 14.23 45.16 3.66
3840 5046 2.745821 CAGCTTAAGCAATGCTCAGTGA 59.254 45.455 28.39 0.00 45.16 3.41
3841 5047 2.746362 AGCTTAAGCAATGCTCAGTGAC 59.254 45.455 28.39 0.00 45.16 3.67
3842 5048 2.485426 GCTTAAGCAATGCTCAGTGACA 59.515 45.455 22.59 0.00 38.25 3.58
3843 5049 3.128242 GCTTAAGCAATGCTCAGTGACAT 59.872 43.478 22.59 0.00 38.25 3.06
3844 5050 4.730035 GCTTAAGCAATGCTCAGTGACATC 60.730 45.833 22.59 0.00 38.25 3.06
3845 5051 2.783609 AGCAATGCTCAGTGACATCT 57.216 45.000 0.00 1.83 30.62 2.90
3846 5052 2.357075 AGCAATGCTCAGTGACATCTG 58.643 47.619 0.00 9.33 30.62 2.90
3847 5053 1.202154 GCAATGCTCAGTGACATCTGC 60.202 52.381 0.00 16.62 35.63 4.26
3848 5054 1.400846 CAATGCTCAGTGACATCTGCC 59.599 52.381 8.15 0.00 35.63 4.85
3849 5055 0.910338 ATGCTCAGTGACATCTGCCT 59.090 50.000 0.00 0.00 35.63 4.75
3850 5056 0.689055 TGCTCAGTGACATCTGCCTT 59.311 50.000 0.00 0.00 35.63 4.35
3851 5057 1.072806 TGCTCAGTGACATCTGCCTTT 59.927 47.619 0.00 0.00 35.63 3.11
3852 5058 1.736681 GCTCAGTGACATCTGCCTTTC 59.263 52.381 0.00 0.00 35.63 2.62
3853 5059 2.873245 GCTCAGTGACATCTGCCTTTCA 60.873 50.000 0.00 0.00 35.63 2.69
3854 5060 3.405831 CTCAGTGACATCTGCCTTTCAA 58.594 45.455 0.00 0.00 35.63 2.69
3855 5061 3.817084 CTCAGTGACATCTGCCTTTCAAA 59.183 43.478 0.00 0.00 35.63 2.69
3856 5062 3.817084 TCAGTGACATCTGCCTTTCAAAG 59.183 43.478 0.00 0.00 35.63 2.77
3857 5063 2.555757 AGTGACATCTGCCTTTCAAAGC 59.444 45.455 0.00 0.00 0.00 3.51
3858 5064 2.555757 GTGACATCTGCCTTTCAAAGCT 59.444 45.455 0.00 0.00 0.00 3.74
3859 5065 2.816087 TGACATCTGCCTTTCAAAGCTC 59.184 45.455 0.00 0.00 0.00 4.09
3860 5066 2.816087 GACATCTGCCTTTCAAAGCTCA 59.184 45.455 0.00 0.00 0.00 4.26
3861 5067 3.225104 ACATCTGCCTTTCAAAGCTCAA 58.775 40.909 0.00 0.00 0.00 3.02
3862 5068 3.255149 ACATCTGCCTTTCAAAGCTCAAG 59.745 43.478 0.00 0.00 0.00 3.02
3863 5069 3.213206 TCTGCCTTTCAAAGCTCAAGA 57.787 42.857 0.00 0.00 0.00 3.02
3864 5070 2.880890 TCTGCCTTTCAAAGCTCAAGAC 59.119 45.455 0.00 0.00 0.00 3.01
3865 5071 2.620115 CTGCCTTTCAAAGCTCAAGACA 59.380 45.455 0.00 0.00 0.00 3.41
3866 5072 2.358898 TGCCTTTCAAAGCTCAAGACAC 59.641 45.455 0.00 0.00 0.00 3.67
3867 5073 2.287849 GCCTTTCAAAGCTCAAGACACC 60.288 50.000 0.00 0.00 0.00 4.16
3868 5074 2.951642 CCTTTCAAAGCTCAAGACACCA 59.048 45.455 0.00 0.00 0.00 4.17
3869 5075 3.571401 CCTTTCAAAGCTCAAGACACCAT 59.429 43.478 0.00 0.00 0.00 3.55
3870 5076 4.761739 CCTTTCAAAGCTCAAGACACCATA 59.238 41.667 0.00 0.00 0.00 2.74
3871 5077 5.335191 CCTTTCAAAGCTCAAGACACCATAC 60.335 44.000 0.00 0.00 0.00 2.39
3872 5078 4.350368 TCAAAGCTCAAGACACCATACA 57.650 40.909 0.00 0.00 0.00 2.29
3873 5079 4.910195 TCAAAGCTCAAGACACCATACAT 58.090 39.130 0.00 0.00 0.00 2.29
3874 5080 4.937620 TCAAAGCTCAAGACACCATACATC 59.062 41.667 0.00 0.00 0.00 3.06
3875 5081 3.550437 AGCTCAAGACACCATACATCC 57.450 47.619 0.00 0.00 0.00 3.51
3876 5082 2.840038 AGCTCAAGACACCATACATCCA 59.160 45.455 0.00 0.00 0.00 3.41
3877 5083 3.264193 AGCTCAAGACACCATACATCCAA 59.736 43.478 0.00 0.00 0.00 3.53
3878 5084 4.009675 GCTCAAGACACCATACATCCAAA 58.990 43.478 0.00 0.00 0.00 3.28
3879 5085 4.095483 GCTCAAGACACCATACATCCAAAG 59.905 45.833 0.00 0.00 0.00 2.77
3880 5086 4.588899 TCAAGACACCATACATCCAAAGG 58.411 43.478 0.00 0.00 0.00 3.11
3881 5087 4.042809 TCAAGACACCATACATCCAAAGGT 59.957 41.667 0.00 0.00 0.00 3.50
3882 5088 5.249622 TCAAGACACCATACATCCAAAGGTA 59.750 40.000 0.00 0.00 0.00 3.08
3883 5089 5.099042 AGACACCATACATCCAAAGGTAC 57.901 43.478 0.00 0.00 0.00 3.34
3884 5090 4.534500 AGACACCATACATCCAAAGGTACA 59.466 41.667 0.00 0.00 0.00 2.90
3885 5091 5.013704 AGACACCATACATCCAAAGGTACAA 59.986 40.000 0.00 0.00 0.00 2.41
3886 5092 5.826643 ACACCATACATCCAAAGGTACAAT 58.173 37.500 0.00 0.00 0.00 2.71
3887 5093 5.652014 ACACCATACATCCAAAGGTACAATG 59.348 40.000 0.00 0.00 0.00 2.82
3888 5094 5.885352 CACCATACATCCAAAGGTACAATGA 59.115 40.000 0.00 0.00 0.00 2.57
3889 5095 6.376864 CACCATACATCCAAAGGTACAATGAA 59.623 38.462 0.00 0.00 0.00 2.57
3890 5096 7.068593 CACCATACATCCAAAGGTACAATGAAT 59.931 37.037 0.00 0.00 0.00 2.57
3891 5097 7.285401 ACCATACATCCAAAGGTACAATGAATC 59.715 37.037 0.00 0.00 0.00 2.52
3892 5098 7.285172 CCATACATCCAAAGGTACAATGAATCA 59.715 37.037 0.00 0.00 0.00 2.57
3893 5099 8.685427 CATACATCCAAAGGTACAATGAATCAA 58.315 33.333 0.00 0.00 0.00 2.57
3894 5100 6.924111 ACATCCAAAGGTACAATGAATCAAC 58.076 36.000 0.00 0.00 0.00 3.18
3895 5101 5.975693 TCCAAAGGTACAATGAATCAACC 57.024 39.130 0.00 0.00 0.00 3.77
3896 5102 5.640147 TCCAAAGGTACAATGAATCAACCT 58.360 37.500 0.00 0.00 42.35 3.50
3913 5119 9.503427 GAATCAACCTTTATTTATGAGAAACCG 57.497 33.333 0.00 0.00 0.00 4.44
3914 5120 7.989416 TCAACCTTTATTTATGAGAAACCGT 57.011 32.000 0.00 0.00 0.00 4.83
3915 5121 7.812648 TCAACCTTTATTTATGAGAAACCGTG 58.187 34.615 0.00 0.00 0.00 4.94
3916 5122 7.446013 TCAACCTTTATTTATGAGAAACCGTGT 59.554 33.333 0.00 0.00 0.00 4.49
3917 5123 7.754851 ACCTTTATTTATGAGAAACCGTGTT 57.245 32.000 0.00 0.00 0.00 3.32
3918 5124 8.173542 ACCTTTATTTATGAGAAACCGTGTTT 57.826 30.769 2.23 2.23 0.00 2.83
3919 5125 8.635328 ACCTTTATTTATGAGAAACCGTGTTTT 58.365 29.630 3.96 0.00 0.00 2.43
3925 5131 8.665643 TTTATGAGAAACCGTGTTTTAAGAGA 57.334 30.769 3.96 0.00 0.00 3.10
3926 5132 8.665643 TTATGAGAAACCGTGTTTTAAGAGAA 57.334 30.769 3.96 0.00 0.00 2.87
3927 5133 6.354039 TGAGAAACCGTGTTTTAAGAGAAC 57.646 37.500 3.96 0.00 0.00 3.01
3928 5134 5.875910 TGAGAAACCGTGTTTTAAGAGAACA 59.124 36.000 3.96 0.00 34.83 3.18
3929 5135 6.540914 TGAGAAACCGTGTTTTAAGAGAACAT 59.459 34.615 3.96 0.00 39.03 2.71
3930 5136 6.725246 AGAAACCGTGTTTTAAGAGAACATG 58.275 36.000 4.42 4.42 41.45 3.21
3931 5137 6.540914 AGAAACCGTGTTTTAAGAGAACATGA 59.459 34.615 10.85 0.00 43.40 3.07
3932 5138 5.924475 ACCGTGTTTTAAGAGAACATGAG 57.076 39.130 10.85 5.51 43.40 2.90
3933 5139 4.213482 ACCGTGTTTTAAGAGAACATGAGC 59.787 41.667 10.85 0.00 43.40 4.26
3934 5140 4.378459 CCGTGTTTTAAGAGAACATGAGCC 60.378 45.833 10.85 0.00 43.40 4.70
3935 5141 4.213270 CGTGTTTTAAGAGAACATGAGCCA 59.787 41.667 0.00 0.00 43.40 4.75
3936 5142 5.452777 GTGTTTTAAGAGAACATGAGCCAC 58.547 41.667 0.00 0.00 39.03 5.01
3937 5143 5.008613 GTGTTTTAAGAGAACATGAGCCACA 59.991 40.000 0.00 0.00 39.03 4.17
3938 5144 5.239306 TGTTTTAAGAGAACATGAGCCACAG 59.761 40.000 0.00 0.00 32.44 3.66
3939 5145 1.818642 AAGAGAACATGAGCCACAGC 58.181 50.000 0.00 0.00 40.32 4.40
3940 5146 0.035630 AGAGAACATGAGCCACAGCC 60.036 55.000 0.00 0.00 41.25 4.85
3941 5147 0.035630 GAGAACATGAGCCACAGCCT 60.036 55.000 0.00 0.00 41.25 4.58
3942 5148 1.208052 GAGAACATGAGCCACAGCCTA 59.792 52.381 0.00 0.00 41.25 3.93
3943 5149 1.209019 AGAACATGAGCCACAGCCTAG 59.791 52.381 0.00 0.00 41.25 3.02
3944 5150 1.208052 GAACATGAGCCACAGCCTAGA 59.792 52.381 0.00 0.00 41.25 2.43
3945 5151 1.279496 ACATGAGCCACAGCCTAGAA 58.721 50.000 0.00 0.00 41.25 2.10
3946 5152 1.065854 ACATGAGCCACAGCCTAGAAC 60.066 52.381 0.00 0.00 41.25 3.01
3947 5153 1.065926 CATGAGCCACAGCCTAGAACA 60.066 52.381 0.00 0.00 41.25 3.18
3948 5154 1.055849 TGAGCCACAGCCTAGAACAA 58.944 50.000 0.00 0.00 41.25 2.83
3949 5155 1.270839 TGAGCCACAGCCTAGAACAAC 60.271 52.381 0.00 0.00 41.25 3.32
3950 5156 0.764890 AGCCACAGCCTAGAACAACA 59.235 50.000 0.00 0.00 41.25 3.33
3951 5157 1.160137 GCCACAGCCTAGAACAACAG 58.840 55.000 0.00 0.00 0.00 3.16
3952 5158 1.270839 GCCACAGCCTAGAACAACAGA 60.271 52.381 0.00 0.00 0.00 3.41
3953 5159 2.417719 CCACAGCCTAGAACAACAGAC 58.582 52.381 0.00 0.00 0.00 3.51
3954 5160 2.061773 CACAGCCTAGAACAACAGACG 58.938 52.381 0.00 0.00 0.00 4.18
3955 5161 1.687123 ACAGCCTAGAACAACAGACGT 59.313 47.619 0.00 0.00 0.00 4.34
3956 5162 2.288273 ACAGCCTAGAACAACAGACGTC 60.288 50.000 7.70 7.70 0.00 4.34
3957 5163 1.068472 AGCCTAGAACAACAGACGTCG 60.068 52.381 10.46 7.86 0.00 5.12
3958 5164 1.068748 GCCTAGAACAACAGACGTCGA 60.069 52.381 10.46 0.00 0.00 4.20
3959 5165 2.415625 GCCTAGAACAACAGACGTCGAT 60.416 50.000 10.46 0.00 0.00 3.59
3960 5166 3.181503 GCCTAGAACAACAGACGTCGATA 60.182 47.826 10.46 0.00 0.00 2.92
3961 5167 4.673580 GCCTAGAACAACAGACGTCGATAA 60.674 45.833 10.46 0.00 0.00 1.75
3962 5168 5.396484 CCTAGAACAACAGACGTCGATAAA 58.604 41.667 10.46 0.00 0.00 1.40
3963 5169 5.512082 CCTAGAACAACAGACGTCGATAAAG 59.488 44.000 10.46 2.21 0.00 1.85
3964 5170 5.117355 AGAACAACAGACGTCGATAAAGA 57.883 39.130 10.46 0.00 0.00 2.52
3965 5171 5.526115 AGAACAACAGACGTCGATAAAGAA 58.474 37.500 10.46 0.00 0.00 2.52
3966 5172 6.157211 AGAACAACAGACGTCGATAAAGAAT 58.843 36.000 10.46 0.00 0.00 2.40
3967 5173 6.308282 AGAACAACAGACGTCGATAAAGAATC 59.692 38.462 10.46 2.42 0.00 2.52
3968 5174 5.466819 ACAACAGACGTCGATAAAGAATCA 58.533 37.500 10.46 0.00 33.87 2.57
3969 5175 5.573282 ACAACAGACGTCGATAAAGAATCAG 59.427 40.000 10.46 0.00 33.87 2.90
3970 5176 4.673441 ACAGACGTCGATAAAGAATCAGG 58.327 43.478 10.46 0.00 33.87 3.86
3971 5177 3.487574 CAGACGTCGATAAAGAATCAGGC 59.512 47.826 10.46 0.00 33.87 4.85
3972 5178 2.460918 ACGTCGATAAAGAATCAGGCG 58.539 47.619 0.00 0.00 40.00 5.52
3973 5179 1.190323 CGTCGATAAAGAATCAGGCGC 59.810 52.381 0.00 0.00 32.54 6.53
3974 5180 2.201732 GTCGATAAAGAATCAGGCGCA 58.798 47.619 10.83 0.00 33.87 6.09
3975 5181 2.802816 GTCGATAAAGAATCAGGCGCAT 59.197 45.455 10.83 0.00 33.87 4.73
3976 5182 2.802247 TCGATAAAGAATCAGGCGCATG 59.198 45.455 17.42 17.42 33.87 4.06
3977 5183 2.663879 CGATAAAGAATCAGGCGCATGC 60.664 50.000 18.83 7.91 35.75 4.06
3978 5184 1.748950 TAAAGAATCAGGCGCATGCA 58.251 45.000 18.83 6.93 45.35 3.96
3979 5185 0.454600 AAAGAATCAGGCGCATGCAG 59.545 50.000 18.83 11.69 45.35 4.41
3980 5186 0.679002 AAGAATCAGGCGCATGCAGT 60.679 50.000 18.83 5.63 45.35 4.40
3981 5187 0.679002 AGAATCAGGCGCATGCAGTT 60.679 50.000 18.83 11.82 45.35 3.16
3982 5188 0.248377 GAATCAGGCGCATGCAGTTC 60.248 55.000 18.83 16.48 45.35 3.01
3983 5189 0.679002 AATCAGGCGCATGCAGTTCT 60.679 50.000 18.83 5.90 45.35 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.849168 CCATAAATAGTTGCAGTTATCAATCCA 58.151 33.333 0.00 0.00 0.00 3.41
34 35 7.809806 GCCATAAATAGTTGCAGTTATCAATCC 59.190 37.037 0.00 0.00 0.00 3.01
133 134 4.037208 CACCTGGCCAATATCTTGATGTTC 59.963 45.833 7.01 0.00 34.04 3.18
220 221 2.665519 CGGATTTTGTTTGCAGGTCGAG 60.666 50.000 0.00 0.00 0.00 4.04
304 305 5.418310 TTGTTCTGAAAACTAAAGAGCCG 57.582 39.130 0.00 0.00 0.00 5.52
319 320 6.653273 ATGATGTCGTGATACTTTGTTCTG 57.347 37.500 0.00 0.00 0.00 3.02
336 337 5.889853 AGTGTTGCTCCATTGATAATGATGT 59.110 36.000 3.24 0.00 41.46 3.06
348 349 1.901591 CTTCACCAGTGTTGCTCCAT 58.098 50.000 0.00 0.00 0.00 3.41
388 389 5.762218 AGCCAACTTGCATCTGATACTATTC 59.238 40.000 0.00 0.00 0.00 1.75
393 394 6.382869 AATAAGCCAACTTGCATCTGATAC 57.617 37.500 0.00 0.00 36.57 2.24
419 420 9.463443 TCTTTTACTTTCTGAGCAAATTAAAGC 57.537 29.630 0.00 0.00 31.78 3.51
469 470 2.798976 TTGTGAAGGCTGCAATGAAC 57.201 45.000 0.00 0.00 0.00 3.18
586 587 9.131791 TGCTTTACCTACTTTCATTTTCTCTTT 57.868 29.630 0.00 0.00 0.00 2.52
682 683 0.322187 ACCGAACCTATGGTTGGCAC 60.322 55.000 6.72 0.00 46.95 5.01
694 695 3.998341 TGAAACAGCATTAGTACCGAACC 59.002 43.478 0.00 0.00 0.00 3.62
695 696 4.449743 TGTGAAACAGCATTAGTACCGAAC 59.550 41.667 0.00 0.00 45.67 3.95
729 730 7.356154 GCGAAACAAGTCAAAGTGTATTTAACG 60.356 37.037 0.00 0.00 0.00 3.18
1056 1083 1.035932 GGCTCCACTCGTAGTAGGCA 61.036 60.000 0.00 0.00 31.80 4.75
1141 1168 2.838436 TAGCTGGGGAGGGACATGCA 62.838 60.000 0.00 0.00 0.00 3.96
1240 1275 3.446968 TCGGTAAGGAAGAAGATTGGGA 58.553 45.455 0.00 0.00 0.00 4.37
1255 1290 1.871676 CAGATCGATCGGTCTCGGTAA 59.128 52.381 27.62 0.00 39.13 2.85
1505 1777 8.406297 TGATTCGATAAATACGCTAGCATCTAT 58.594 33.333 16.45 3.23 0.00 1.98
1825 2208 9.658475 CAAATTGTGACGTTACAGAAAGATTTA 57.342 29.630 13.22 0.00 0.00 1.40
1848 2236 1.107114 AACCAACACGCATGACCAAA 58.893 45.000 0.00 0.00 0.00 3.28
1874 2262 1.739466 ACAGCATGCATGTTAAGGTCG 59.261 47.619 26.79 11.12 42.53 4.79
1983 2694 1.147817 AGGTTCCCTTGCCTGTCAATT 59.852 47.619 0.00 0.00 33.57 2.32
2041 2752 3.382832 CCCTCCTTGACGGCGACT 61.383 66.667 16.62 0.00 0.00 4.18
2746 3461 2.554032 ACAACACAATGGCAAGTAGAGC 59.446 45.455 0.00 0.00 0.00 4.09
2747 3462 3.610114 GCACAACACAATGGCAAGTAGAG 60.610 47.826 0.00 0.00 0.00 2.43
2756 3471 1.069022 CGGAGAAGCACAACACAATGG 60.069 52.381 0.00 0.00 0.00 3.16
2776 3499 4.647424 TCGCCACCATGGATTAATTTTC 57.353 40.909 21.47 0.00 40.96 2.29
2793 3550 6.073765 ACAAAACGTATCATTAGATCATCGCC 60.074 38.462 0.00 0.00 35.67 5.54
2823 3585 3.120060 GCTGAATATCGGGCTGCAATAAG 60.120 47.826 0.50 0.00 0.00 1.73
2887 4070 3.386237 GACGCCTCCAGCACCTCT 61.386 66.667 0.00 0.00 44.04 3.69
2985 4169 0.596600 GCTGATGCGCAATGAATGGG 60.597 55.000 17.11 0.00 44.44 4.00
3037 4221 1.546476 AGACTCGTGGTCAAAGCCTAG 59.454 52.381 12.14 0.00 46.72 3.02
3048 4243 1.338337 ACTCAACTGACAGACTCGTGG 59.662 52.381 10.08 0.00 0.00 4.94
3050 4245 3.381908 AGAAACTCAACTGACAGACTCGT 59.618 43.478 10.08 0.00 0.00 4.18
3051 4246 3.733224 CAGAAACTCAACTGACAGACTCG 59.267 47.826 10.08 0.00 36.38 4.18
3068 4268 5.182380 GGTGATCGATTAAAACCACCAGAAA 59.818 40.000 20.87 0.00 42.50 2.52
3070 4270 4.019681 AGGTGATCGATTAAAACCACCAGA 60.020 41.667 25.15 0.00 44.64 3.86
3114 4314 1.341080 CATTCTGTTTTGCCAGGGGT 58.659 50.000 0.00 0.00 33.14 4.95
3124 4324 3.211045 ACGTGGCACTAACATTCTGTTT 58.789 40.909 16.72 0.00 41.45 2.83
3143 4343 6.475727 AGATGTCCATTTAACTAATGACGACG 59.524 38.462 0.00 0.00 45.35 5.12
3162 4362 4.965200 AGGGGCAACTAAGATAGATGTC 57.035 45.455 0.00 0.00 33.07 3.06
3163 4363 4.687219 GCAAGGGGCAACTAAGATAGATGT 60.687 45.833 0.00 0.00 43.97 3.06
3164 4364 3.817647 GCAAGGGGCAACTAAGATAGATG 59.182 47.826 0.00 0.00 43.97 2.90
3165 4365 4.092116 GCAAGGGGCAACTAAGATAGAT 57.908 45.455 0.00 0.00 43.97 1.98
3166 4366 3.560636 GCAAGGGGCAACTAAGATAGA 57.439 47.619 0.00 0.00 43.97 1.98
3178 4378 0.529378 CATTCTGTTCTGCAAGGGGC 59.471 55.000 0.00 0.00 45.13 5.80
3179 4379 1.542915 CACATTCTGTTCTGCAAGGGG 59.457 52.381 0.00 0.00 0.00 4.79
3180 4380 2.030540 CACACATTCTGTTCTGCAAGGG 60.031 50.000 0.00 0.00 0.00 3.95
3181 4381 2.620115 ACACACATTCTGTTCTGCAAGG 59.380 45.455 0.00 0.00 0.00 3.61
3182 4382 3.313249 TGACACACATTCTGTTCTGCAAG 59.687 43.478 0.00 0.00 0.00 4.01
3183 4383 3.065233 GTGACACACATTCTGTTCTGCAA 59.935 43.478 0.00 0.00 34.08 4.08
3184 4384 2.613595 GTGACACACATTCTGTTCTGCA 59.386 45.455 0.00 0.00 34.08 4.41
3185 4385 2.348872 CGTGACACACATTCTGTTCTGC 60.349 50.000 6.37 0.00 33.40 4.26
3186 4386 2.866156 ACGTGACACACATTCTGTTCTG 59.134 45.455 6.37 0.00 33.40 3.02
3187 4387 3.123804 GACGTGACACACATTCTGTTCT 58.876 45.455 6.37 0.00 33.40 3.01
3188 4388 2.097396 CGACGTGACACACATTCTGTTC 60.097 50.000 6.37 0.00 33.40 3.18
3189 4389 1.858458 CGACGTGACACACATTCTGTT 59.142 47.619 6.37 0.00 33.40 3.16
3190 4390 1.202371 ACGACGTGACACACATTCTGT 60.202 47.619 0.00 0.00 33.40 3.41
3191 4391 1.452025 GACGACGTGACACACATTCTG 59.548 52.381 4.58 0.00 33.40 3.02
3192 4392 1.066454 TGACGACGTGACACACATTCT 59.934 47.619 4.58 0.00 33.40 2.40
3193 4393 1.483316 TGACGACGTGACACACATTC 58.517 50.000 4.58 0.00 33.40 2.67
3194 4394 2.148916 ATGACGACGTGACACACATT 57.851 45.000 4.58 0.00 33.40 2.71
3195 4395 2.148916 AATGACGACGTGACACACAT 57.851 45.000 4.58 0.00 33.40 3.21
3196 4396 2.033675 ACTAATGACGACGTGACACACA 59.966 45.455 4.58 0.00 33.40 3.72
3197 4397 2.658285 ACTAATGACGACGTGACACAC 58.342 47.619 4.58 0.00 0.00 3.82
3198 4398 3.358707 AACTAATGACGACGTGACACA 57.641 42.857 4.58 0.00 0.00 3.72
3199 4399 5.811018 TTTAACTAATGACGACGTGACAC 57.189 39.130 4.58 0.00 0.00 3.67
3200 4400 6.151004 TCATTTAACTAATGACGACGTGACA 58.849 36.000 4.58 0.00 45.91 3.58
3201 4401 6.307318 ACTCATTTAACTAATGACGACGTGAC 59.693 38.462 4.58 0.00 45.91 3.67
3205 4405 6.627690 ACACTCATTTAACTAATGACGACG 57.372 37.500 0.00 0.00 45.91 5.12
3215 4415 5.127031 ACCAGCAACAAACACTCATTTAACT 59.873 36.000 0.00 0.00 0.00 2.24
3237 4437 1.134699 TGCATCATCGGTTCTGAGACC 60.135 52.381 0.00 0.00 36.31 3.85
3249 4449 7.307042 CCGAATATAAGGATCGATTGCATCATC 60.307 40.741 0.00 0.00 38.82 2.92
3269 4470 3.759618 GGTCAAACCATTTCACCCGAATA 59.240 43.478 0.00 0.00 38.42 1.75
3276 4477 2.693074 ACACAGGGTCAAACCATTTCAC 59.307 45.455 0.00 0.00 41.02 3.18
3289 4490 7.039434 GGTCTAGTAACTAAAGTAACACAGGGT 60.039 40.741 0.00 0.00 0.00 4.34
3292 4493 7.541437 GCAGGTCTAGTAACTAAAGTAACACAG 59.459 40.741 0.00 0.00 0.00 3.66
3299 4500 5.066246 CGCTAGCAGGTCTAGTAACTAAAGT 59.934 44.000 16.45 0.00 45.22 2.66
3311 4515 0.390472 GCAGAAACGCTAGCAGGTCT 60.390 55.000 16.45 10.19 0.00 3.85
3375 4579 3.423539 AGCAGGAACAAGAAGCATGTA 57.576 42.857 0.00 0.00 0.00 2.29
3391 4595 4.744795 AACAGTAGATCCTACCAAGCAG 57.255 45.455 0.00 0.00 0.00 4.24
3409 4613 9.541143 GGAAGAAATAGTTCCAAATTCAAAACA 57.459 29.630 0.00 0.00 42.79 2.83
3471 4677 1.338020 GAAAGGCTGTGAAGGTTGGTG 59.662 52.381 0.00 0.00 0.00 4.17
3474 4680 1.000938 GCTGAAAGGCTGTGAAGGTTG 60.001 52.381 0.00 0.00 0.00 3.77
3583 4789 2.506438 GAGGGCGACACGTAGCAC 60.506 66.667 11.11 7.87 34.70 4.40
3597 4803 0.397187 CTGATCTGATGGCTGGGAGG 59.603 60.000 0.00 0.00 0.00 4.30
3603 4809 1.210538 TCCTTGCTGATCTGATGGCT 58.789 50.000 3.42 0.00 0.00 4.75
3630 4836 3.066342 GCATTCTTCACTCATCACCCATG 59.934 47.826 0.00 0.00 0.00 3.66
3640 4846 4.820716 AGATAATGGCAGCATTCTTCACTC 59.179 41.667 0.00 0.00 0.00 3.51
3641 4847 4.789807 AGATAATGGCAGCATTCTTCACT 58.210 39.130 0.00 0.00 0.00 3.41
3642 4848 6.624352 TTAGATAATGGCAGCATTCTTCAC 57.376 37.500 0.00 0.00 0.00 3.18
3643 4849 7.643569 TTTTAGATAATGGCAGCATTCTTCA 57.356 32.000 0.00 0.00 0.00 3.02
3667 4873 5.048713 GCACTGGCACTGTATTAGTCTTTTT 60.049 40.000 0.00 0.00 38.84 1.94
3668 4874 4.455877 GCACTGGCACTGTATTAGTCTTTT 59.544 41.667 0.00 0.00 38.84 2.27
3669 4875 4.003648 GCACTGGCACTGTATTAGTCTTT 58.996 43.478 0.00 0.00 38.84 2.52
3670 4876 3.600388 GCACTGGCACTGTATTAGTCTT 58.400 45.455 0.00 0.00 38.84 3.01
3671 4877 2.093447 GGCACTGGCACTGTATTAGTCT 60.093 50.000 0.00 0.00 43.71 3.24
3672 4878 2.280628 GGCACTGGCACTGTATTAGTC 58.719 52.381 0.00 0.00 43.71 2.59
3673 4879 1.628340 TGGCACTGGCACTGTATTAGT 59.372 47.619 0.07 0.00 43.71 2.24
3674 4880 2.093500 TCTGGCACTGGCACTGTATTAG 60.093 50.000 0.07 0.00 43.71 1.73
3675 4881 1.905894 TCTGGCACTGGCACTGTATTA 59.094 47.619 0.07 0.00 43.71 0.98
3676 4882 0.692476 TCTGGCACTGGCACTGTATT 59.308 50.000 0.07 0.00 43.71 1.89
3677 4883 0.036010 GTCTGGCACTGGCACTGTAT 60.036 55.000 0.07 0.00 43.71 2.29
3678 4884 1.371183 GTCTGGCACTGGCACTGTA 59.629 57.895 0.07 0.00 43.71 2.74
3679 4885 2.111878 GTCTGGCACTGGCACTGT 59.888 61.111 0.07 0.00 43.71 3.55
3680 4886 2.434658 TACGTCTGGCACTGGCACTG 62.435 60.000 0.07 0.00 43.71 3.66
3681 4887 2.207229 TACGTCTGGCACTGGCACT 61.207 57.895 0.07 0.00 43.71 4.40
3682 4888 2.027625 GTACGTCTGGCACTGGCAC 61.028 63.158 0.07 0.00 43.71 5.01
3683 4889 2.342279 GTACGTCTGGCACTGGCA 59.658 61.111 5.02 5.02 43.71 4.92
3684 4890 2.027625 GTGTACGTCTGGCACTGGC 61.028 63.158 0.00 0.00 40.13 4.85
3685 4891 1.733041 CGTGTACGTCTGGCACTGG 60.733 63.158 0.00 0.00 34.11 4.00
3686 4892 3.842602 CGTGTACGTCTGGCACTG 58.157 61.111 0.00 0.00 34.11 3.66
3696 4902 3.181534 CCTTGAATGTTGCTACGTGTACG 60.182 47.826 0.00 2.43 46.33 3.67
3697 4903 3.991773 TCCTTGAATGTTGCTACGTGTAC 59.008 43.478 0.00 0.00 0.00 2.90
3698 4904 4.260139 TCCTTGAATGTTGCTACGTGTA 57.740 40.909 0.00 0.00 0.00 2.90
3699 4905 3.120321 TCCTTGAATGTTGCTACGTGT 57.880 42.857 0.00 0.00 0.00 4.49
3700 4906 4.083324 ACAATCCTTGAATGTTGCTACGTG 60.083 41.667 0.00 0.00 0.00 4.49
3701 4907 4.072131 ACAATCCTTGAATGTTGCTACGT 58.928 39.130 0.00 0.00 0.00 3.57
3702 4908 4.685169 ACAATCCTTGAATGTTGCTACG 57.315 40.909 0.00 0.00 0.00 3.51
3703 4909 6.968904 CACATACAATCCTTGAATGTTGCTAC 59.031 38.462 0.00 0.00 28.14 3.58
3704 4910 6.658816 ACACATACAATCCTTGAATGTTGCTA 59.341 34.615 0.00 0.00 28.14 3.49
3705 4911 5.477984 ACACATACAATCCTTGAATGTTGCT 59.522 36.000 0.00 0.00 28.14 3.91
3706 4912 5.713025 ACACATACAATCCTTGAATGTTGC 58.287 37.500 0.00 0.00 28.14 4.17
3707 4913 8.296000 TGTAACACATACAATCCTTGAATGTTG 58.704 33.333 0.00 0.00 41.52 3.33
3708 4914 8.402798 TGTAACACATACAATCCTTGAATGTT 57.597 30.769 0.00 0.00 41.52 2.71
3709 4915 7.994425 TGTAACACATACAATCCTTGAATGT 57.006 32.000 0.00 0.00 41.52 2.71
3734 4940 8.832521 CCGGCAAGATAATTGTACATTAAACTA 58.167 33.333 0.00 0.00 0.00 2.24
3735 4941 7.554835 TCCGGCAAGATAATTGTACATTAAACT 59.445 33.333 0.00 0.74 0.00 2.66
3736 4942 7.699566 TCCGGCAAGATAATTGTACATTAAAC 58.300 34.615 0.00 0.00 0.00 2.01
3737 4943 7.554835 ACTCCGGCAAGATAATTGTACATTAAA 59.445 33.333 0.00 0.00 0.00 1.52
3738 4944 7.051623 ACTCCGGCAAGATAATTGTACATTAA 58.948 34.615 0.00 0.00 0.00 1.40
3739 4945 6.588204 ACTCCGGCAAGATAATTGTACATTA 58.412 36.000 0.00 0.00 0.00 1.90
3740 4946 5.437060 ACTCCGGCAAGATAATTGTACATT 58.563 37.500 0.00 0.00 0.00 2.71
3741 4947 5.036117 ACTCCGGCAAGATAATTGTACAT 57.964 39.130 0.00 0.00 0.00 2.29
3742 4948 4.481368 ACTCCGGCAAGATAATTGTACA 57.519 40.909 0.00 0.00 0.00 2.90
3743 4949 5.353938 TGTACTCCGGCAAGATAATTGTAC 58.646 41.667 0.00 0.00 0.00 2.90
3744 4950 5.361571 TCTGTACTCCGGCAAGATAATTGTA 59.638 40.000 0.00 0.00 0.00 2.41
3745 4951 4.161565 TCTGTACTCCGGCAAGATAATTGT 59.838 41.667 0.00 0.00 0.00 2.71
3746 4952 4.693283 TCTGTACTCCGGCAAGATAATTG 58.307 43.478 0.00 0.00 0.00 2.32
3747 4953 5.163301 ACATCTGTACTCCGGCAAGATAATT 60.163 40.000 0.00 0.00 0.00 1.40
3748 4954 4.345257 ACATCTGTACTCCGGCAAGATAAT 59.655 41.667 0.00 0.00 0.00 1.28
3749 4955 3.704566 ACATCTGTACTCCGGCAAGATAA 59.295 43.478 0.00 0.00 0.00 1.75
3750 4956 3.296854 ACATCTGTACTCCGGCAAGATA 58.703 45.455 0.00 0.00 0.00 1.98
3751 4957 2.111384 ACATCTGTACTCCGGCAAGAT 58.889 47.619 0.00 0.00 0.00 2.40
3752 4958 1.557099 ACATCTGTACTCCGGCAAGA 58.443 50.000 0.00 0.00 0.00 3.02
3753 4959 3.520290 TTACATCTGTACTCCGGCAAG 57.480 47.619 0.00 0.00 0.00 4.01
3754 4960 4.481368 AATTACATCTGTACTCCGGCAA 57.519 40.909 0.00 0.00 0.00 4.52
3755 4961 4.481368 AAATTACATCTGTACTCCGGCA 57.519 40.909 0.00 0.00 0.00 5.69
3756 4962 5.598769 AGTAAATTACATCTGTACTCCGGC 58.401 41.667 5.89 0.00 0.00 6.13
3757 4963 5.913514 CGAGTAAATTACATCTGTACTCCGG 59.086 44.000 5.89 0.00 38.17 5.14
3758 4964 6.493116 ACGAGTAAATTACATCTGTACTCCG 58.507 40.000 5.89 0.00 38.17 4.63
3759 4965 8.699283 AAACGAGTAAATTACATCTGTACTCC 57.301 34.615 5.89 0.00 38.17 3.85
3764 4970 9.052759 AGACAAAAACGAGTAAATTACATCTGT 57.947 29.630 5.89 1.51 0.00 3.41
3765 4971 9.530129 GAGACAAAAACGAGTAAATTACATCTG 57.470 33.333 5.89 0.00 0.00 2.90
3766 4972 8.433126 CGAGACAAAAACGAGTAAATTACATCT 58.567 33.333 5.89 0.00 0.00 2.90
3767 4973 8.219105 ACGAGACAAAAACGAGTAAATTACATC 58.781 33.333 5.89 0.17 0.00 3.06
3768 4974 8.080083 ACGAGACAAAAACGAGTAAATTACAT 57.920 30.769 5.89 0.00 0.00 2.29
3769 4975 7.306749 GGACGAGACAAAAACGAGTAAATTACA 60.307 37.037 5.89 0.00 0.00 2.41
3770 4976 7.005958 GGACGAGACAAAAACGAGTAAATTAC 58.994 38.462 0.00 0.00 0.00 1.89
3771 4977 6.129115 CGGACGAGACAAAAACGAGTAAATTA 60.129 38.462 0.00 0.00 0.00 1.40
3772 4978 5.332808 CGGACGAGACAAAAACGAGTAAATT 60.333 40.000 0.00 0.00 0.00 1.82
3773 4979 4.149396 CGGACGAGACAAAAACGAGTAAAT 59.851 41.667 0.00 0.00 0.00 1.40
3774 4980 3.486841 CGGACGAGACAAAAACGAGTAAA 59.513 43.478 0.00 0.00 0.00 2.01
3775 4981 3.044986 CGGACGAGACAAAAACGAGTAA 58.955 45.455 0.00 0.00 0.00 2.24
3776 4982 2.290367 TCGGACGAGACAAAAACGAGTA 59.710 45.455 0.00 0.00 0.00 2.59
3777 4983 1.066002 TCGGACGAGACAAAAACGAGT 59.934 47.619 0.00 0.00 0.00 4.18
3778 4984 1.450905 GTCGGACGAGACAAAAACGAG 59.549 52.381 0.00 0.00 40.65 4.18
3779 4985 1.066002 AGTCGGACGAGACAAAAACGA 59.934 47.619 1.89 0.00 43.24 3.85
3780 4986 1.484356 AGTCGGACGAGACAAAAACG 58.516 50.000 1.89 0.00 43.24 3.60
3781 4987 2.861935 TCAAGTCGGACGAGACAAAAAC 59.138 45.455 1.89 0.00 43.24 2.43
3782 4988 3.167921 TCAAGTCGGACGAGACAAAAA 57.832 42.857 1.89 0.00 43.24 1.94
3783 4989 2.875087 TCAAGTCGGACGAGACAAAA 57.125 45.000 1.89 0.00 43.24 2.44
3784 4990 3.380479 AATCAAGTCGGACGAGACAAA 57.620 42.857 1.89 0.04 43.24 2.83
3785 4991 3.253921 TGTAATCAAGTCGGACGAGACAA 59.746 43.478 1.89 0.00 43.24 3.18
3786 4992 2.815503 TGTAATCAAGTCGGACGAGACA 59.184 45.455 1.89 1.87 43.24 3.41
3787 4993 3.482722 TGTAATCAAGTCGGACGAGAC 57.517 47.619 1.89 0.00 41.23 3.36
3788 4994 3.733988 GCATGTAATCAAGTCGGACGAGA 60.734 47.826 1.89 5.32 0.00 4.04
3789 4995 2.535984 GCATGTAATCAAGTCGGACGAG 59.464 50.000 1.89 0.00 0.00 4.18
3790 4996 2.536365 GCATGTAATCAAGTCGGACGA 58.464 47.619 1.89 0.00 0.00 4.20
3791 4997 1.593006 GGCATGTAATCAAGTCGGACG 59.407 52.381 1.89 0.00 0.00 4.79
3792 4998 1.940613 GGGCATGTAATCAAGTCGGAC 59.059 52.381 0.00 0.00 0.00 4.79
3793 4999 1.134220 GGGGCATGTAATCAAGTCGGA 60.134 52.381 0.00 0.00 0.00 4.55
3794 5000 1.308998 GGGGCATGTAATCAAGTCGG 58.691 55.000 0.00 0.00 0.00 4.79
3795 5001 0.937304 CGGGGCATGTAATCAAGTCG 59.063 55.000 0.00 0.00 0.00 4.18
3796 5002 0.663153 GCGGGGCATGTAATCAAGTC 59.337 55.000 0.00 0.00 0.00 3.01
3797 5003 0.034574 TGCGGGGCATGTAATCAAGT 60.035 50.000 0.00 0.00 31.71 3.16
3798 5004 0.664761 CTGCGGGGCATGTAATCAAG 59.335 55.000 0.00 0.00 38.13 3.02
3799 5005 1.383456 GCTGCGGGGCATGTAATCAA 61.383 55.000 0.00 0.00 38.13 2.57
3800 5006 1.823470 GCTGCGGGGCATGTAATCA 60.823 57.895 0.00 0.00 38.13 2.57
3801 5007 2.555547 GGCTGCGGGGCATGTAATC 61.556 63.158 0.00 0.00 38.13 1.75
3802 5008 2.519302 GGCTGCGGGGCATGTAAT 60.519 61.111 0.00 0.00 38.13 1.89
3803 5009 4.040426 TGGCTGCGGGGCATGTAA 62.040 61.111 0.00 0.00 45.79 2.41
3814 5020 0.804933 GCATTGCTTAAGCTGGCTGC 60.805 55.000 26.90 22.88 42.66 5.25
3815 5021 0.815734 AGCATTGCTTAAGCTGGCTG 59.184 50.000 27.98 20.14 42.66 4.85
3816 5022 1.101331 GAGCATTGCTTAAGCTGGCT 58.899 50.000 28.54 28.54 39.88 4.75
3817 5023 0.813184 TGAGCATTGCTTAAGCTGGC 59.187 50.000 26.90 24.34 39.88 4.85
3818 5024 2.089980 ACTGAGCATTGCTTAAGCTGG 58.910 47.619 26.90 16.90 39.88 4.85
3819 5025 2.745821 TCACTGAGCATTGCTTAAGCTG 59.254 45.455 26.90 18.80 39.88 4.24
3820 5026 2.746362 GTCACTGAGCATTGCTTAAGCT 59.254 45.455 26.90 7.46 39.88 3.74
3821 5027 2.485426 TGTCACTGAGCATTGCTTAAGC 59.515 45.455 20.84 20.84 39.88 3.09
3822 5028 4.634883 AGATGTCACTGAGCATTGCTTAAG 59.365 41.667 13.35 15.30 39.88 1.85
3823 5029 4.393990 CAGATGTCACTGAGCATTGCTTAA 59.606 41.667 13.35 3.77 39.88 1.85
3824 5030 3.937079 CAGATGTCACTGAGCATTGCTTA 59.063 43.478 13.35 7.86 39.88 3.09
3825 5031 2.747989 CAGATGTCACTGAGCATTGCTT 59.252 45.455 13.35 0.00 39.88 3.91
3826 5032 2.357075 CAGATGTCACTGAGCATTGCT 58.643 47.619 11.79 11.79 43.88 3.91
3827 5033 1.202154 GCAGATGTCACTGAGCATTGC 60.202 52.381 0.00 0.00 39.94 3.56
3828 5034 1.400846 GGCAGATGTCACTGAGCATTG 59.599 52.381 0.00 0.00 39.94 2.82
3829 5035 1.281287 AGGCAGATGTCACTGAGCATT 59.719 47.619 0.00 0.00 39.94 3.56
3830 5036 0.910338 AGGCAGATGTCACTGAGCAT 59.090 50.000 0.00 0.00 39.94 3.79
3831 5037 0.689055 AAGGCAGATGTCACTGAGCA 59.311 50.000 0.00 0.00 39.94 4.26
3832 5038 1.736681 GAAAGGCAGATGTCACTGAGC 59.263 52.381 0.00 0.00 39.94 4.26
3833 5039 3.049708 TGAAAGGCAGATGTCACTGAG 57.950 47.619 0.00 0.00 39.94 3.35
3834 5040 3.490439 TTGAAAGGCAGATGTCACTGA 57.510 42.857 0.00 0.00 39.94 3.41
3835 5041 3.611057 GCTTTGAAAGGCAGATGTCACTG 60.611 47.826 7.09 0.00 40.43 3.66
3836 5042 2.555757 GCTTTGAAAGGCAGATGTCACT 59.444 45.455 7.09 0.00 0.00 3.41
3837 5043 2.555757 AGCTTTGAAAGGCAGATGTCAC 59.444 45.455 7.09 0.00 0.00 3.67
3838 5044 2.816087 GAGCTTTGAAAGGCAGATGTCA 59.184 45.455 7.09 0.00 0.00 3.58
3839 5045 2.816087 TGAGCTTTGAAAGGCAGATGTC 59.184 45.455 7.09 0.00 0.00 3.06
3840 5046 2.867624 TGAGCTTTGAAAGGCAGATGT 58.132 42.857 7.09 0.00 0.00 3.06
3841 5047 3.504906 TCTTGAGCTTTGAAAGGCAGATG 59.495 43.478 7.09 0.00 0.00 2.90
3842 5048 3.505293 GTCTTGAGCTTTGAAAGGCAGAT 59.495 43.478 7.09 0.00 0.00 2.90
3843 5049 2.880890 GTCTTGAGCTTTGAAAGGCAGA 59.119 45.455 7.09 0.00 0.00 4.26
3844 5050 2.620115 TGTCTTGAGCTTTGAAAGGCAG 59.380 45.455 7.09 0.00 30.92 4.85
3845 5051 2.358898 GTGTCTTGAGCTTTGAAAGGCA 59.641 45.455 7.09 0.00 33.35 4.75
3846 5052 2.287849 GGTGTCTTGAGCTTTGAAAGGC 60.288 50.000 7.09 0.00 0.00 4.35
3847 5053 2.951642 TGGTGTCTTGAGCTTTGAAAGG 59.048 45.455 7.09 0.00 0.00 3.11
3848 5054 4.843220 ATGGTGTCTTGAGCTTTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
3849 5055 5.129634 TGTATGGTGTCTTGAGCTTTGAAA 58.870 37.500 0.00 0.00 0.00 2.69
3850 5056 4.713553 TGTATGGTGTCTTGAGCTTTGAA 58.286 39.130 0.00 0.00 0.00 2.69
3851 5057 4.350368 TGTATGGTGTCTTGAGCTTTGA 57.650 40.909 0.00 0.00 0.00 2.69
3852 5058 4.095483 GGATGTATGGTGTCTTGAGCTTTG 59.905 45.833 0.00 0.00 0.00 2.77
3853 5059 4.263462 TGGATGTATGGTGTCTTGAGCTTT 60.263 41.667 0.00 0.00 0.00 3.51
3854 5060 3.264193 TGGATGTATGGTGTCTTGAGCTT 59.736 43.478 0.00 0.00 0.00 3.74
3855 5061 2.840038 TGGATGTATGGTGTCTTGAGCT 59.160 45.455 0.00 0.00 0.00 4.09
3856 5062 3.266510 TGGATGTATGGTGTCTTGAGC 57.733 47.619 0.00 0.00 0.00 4.26
3857 5063 4.637534 CCTTTGGATGTATGGTGTCTTGAG 59.362 45.833 0.00 0.00 0.00 3.02
3858 5064 4.042809 ACCTTTGGATGTATGGTGTCTTGA 59.957 41.667 0.00 0.00 0.00 3.02
3859 5065 4.335416 ACCTTTGGATGTATGGTGTCTTG 58.665 43.478 0.00 0.00 0.00 3.02
3860 5066 4.657814 ACCTTTGGATGTATGGTGTCTT 57.342 40.909 0.00 0.00 0.00 3.01
3861 5067 4.534500 TGTACCTTTGGATGTATGGTGTCT 59.466 41.667 0.00 0.00 32.74 3.41
3862 5068 4.839121 TGTACCTTTGGATGTATGGTGTC 58.161 43.478 0.00 0.00 32.74 3.67
3863 5069 4.919774 TGTACCTTTGGATGTATGGTGT 57.080 40.909 0.00 0.00 32.74 4.16
3864 5070 5.885352 TCATTGTACCTTTGGATGTATGGTG 59.115 40.000 0.00 0.00 32.74 4.17
3865 5071 6.073447 TCATTGTACCTTTGGATGTATGGT 57.927 37.500 0.00 0.00 35.05 3.55
3866 5072 7.285172 TGATTCATTGTACCTTTGGATGTATGG 59.715 37.037 0.00 0.00 0.00 2.74
3867 5073 8.224389 TGATTCATTGTACCTTTGGATGTATG 57.776 34.615 0.00 0.00 0.00 2.39
3868 5074 8.686334 GTTGATTCATTGTACCTTTGGATGTAT 58.314 33.333 0.00 0.00 0.00 2.29
3869 5075 7.122055 GGTTGATTCATTGTACCTTTGGATGTA 59.878 37.037 0.00 0.00 0.00 2.29
3870 5076 6.071391 GGTTGATTCATTGTACCTTTGGATGT 60.071 38.462 0.00 0.00 0.00 3.06
3871 5077 6.153340 AGGTTGATTCATTGTACCTTTGGATG 59.847 38.462 2.49 0.00 35.77 3.51
3872 5078 6.256053 AGGTTGATTCATTGTACCTTTGGAT 58.744 36.000 2.49 0.00 35.77 3.41
3873 5079 5.640147 AGGTTGATTCATTGTACCTTTGGA 58.360 37.500 2.49 0.00 35.77 3.53
3874 5080 5.982890 AGGTTGATTCATTGTACCTTTGG 57.017 39.130 2.49 0.00 35.77 3.28
3887 5093 9.503427 CGGTTTCTCATAAATAAAGGTTGATTC 57.497 33.333 0.00 0.00 0.00 2.52
3888 5094 9.020731 ACGGTTTCTCATAAATAAAGGTTGATT 57.979 29.630 0.00 0.00 0.00 2.57
3889 5095 8.458843 CACGGTTTCTCATAAATAAAGGTTGAT 58.541 33.333 0.00 0.00 0.00 2.57
3890 5096 7.446013 ACACGGTTTCTCATAAATAAAGGTTGA 59.554 33.333 0.00 0.00 0.00 3.18
3891 5097 7.590279 ACACGGTTTCTCATAAATAAAGGTTG 58.410 34.615 0.00 0.00 0.00 3.77
3892 5098 7.754851 ACACGGTTTCTCATAAATAAAGGTT 57.245 32.000 0.00 0.00 0.00 3.50
3893 5099 7.754851 AACACGGTTTCTCATAAATAAAGGT 57.245 32.000 0.00 0.00 0.00 3.50
3899 5105 9.280174 TCTCTTAAAACACGGTTTCTCATAAAT 57.720 29.630 3.06 0.00 0.00 1.40
3900 5106 8.665643 TCTCTTAAAACACGGTTTCTCATAAA 57.334 30.769 3.06 0.00 0.00 1.40
3901 5107 8.553696 GTTCTCTTAAAACACGGTTTCTCATAA 58.446 33.333 3.06 0.00 0.00 1.90
3902 5108 7.711772 TGTTCTCTTAAAACACGGTTTCTCATA 59.288 33.333 3.06 0.00 31.90 2.15
3903 5109 6.540914 TGTTCTCTTAAAACACGGTTTCTCAT 59.459 34.615 3.06 0.00 31.90 2.90
3904 5110 5.875910 TGTTCTCTTAAAACACGGTTTCTCA 59.124 36.000 3.06 0.00 31.90 3.27
3905 5111 6.354039 TGTTCTCTTAAAACACGGTTTCTC 57.646 37.500 3.06 0.00 31.90 2.87
3906 5112 6.540914 TCATGTTCTCTTAAAACACGGTTTCT 59.459 34.615 3.06 0.00 39.29 2.52
3907 5113 6.721321 TCATGTTCTCTTAAAACACGGTTTC 58.279 36.000 3.06 0.00 39.29 2.78
3908 5114 6.687081 TCATGTTCTCTTAAAACACGGTTT 57.313 33.333 0.00 0.00 39.29 3.27
3909 5115 5.277828 GCTCATGTTCTCTTAAAACACGGTT 60.278 40.000 0.00 0.00 39.29 4.44
3910 5116 4.213482 GCTCATGTTCTCTTAAAACACGGT 59.787 41.667 0.00 0.00 39.29 4.83
3911 5117 4.378459 GGCTCATGTTCTCTTAAAACACGG 60.378 45.833 0.00 0.00 39.29 4.94
3912 5118 4.213270 TGGCTCATGTTCTCTTAAAACACG 59.787 41.667 0.00 0.00 39.29 4.49
3913 5119 5.008613 TGTGGCTCATGTTCTCTTAAAACAC 59.991 40.000 0.00 0.00 39.29 3.32
3914 5120 5.129634 TGTGGCTCATGTTCTCTTAAAACA 58.870 37.500 0.00 0.00 40.63 2.83
3915 5121 5.689383 TGTGGCTCATGTTCTCTTAAAAC 57.311 39.130 0.00 0.00 0.00 2.43
3916 5122 4.216257 GCTGTGGCTCATGTTCTCTTAAAA 59.784 41.667 0.00 0.00 35.22 1.52
3917 5123 3.753272 GCTGTGGCTCATGTTCTCTTAAA 59.247 43.478 0.00 0.00 35.22 1.52
3918 5124 3.338249 GCTGTGGCTCATGTTCTCTTAA 58.662 45.455 0.00 0.00 35.22 1.85
3919 5125 2.355108 GGCTGTGGCTCATGTTCTCTTA 60.355 50.000 0.00 0.00 38.73 2.10
3920 5126 1.612726 GGCTGTGGCTCATGTTCTCTT 60.613 52.381 0.00 0.00 38.73 2.85
3921 5127 0.035630 GGCTGTGGCTCATGTTCTCT 60.036 55.000 0.00 0.00 38.73 3.10
3922 5128 0.035630 AGGCTGTGGCTCATGTTCTC 60.036 55.000 0.00 0.00 38.73 2.87
3923 5129 1.209019 CTAGGCTGTGGCTCATGTTCT 59.791 52.381 0.00 0.00 39.70 3.01
3924 5130 1.208052 TCTAGGCTGTGGCTCATGTTC 59.792 52.381 0.00 0.00 39.70 3.18
3925 5131 1.279496 TCTAGGCTGTGGCTCATGTT 58.721 50.000 0.00 0.00 39.70 2.71
3926 5132 1.065854 GTTCTAGGCTGTGGCTCATGT 60.066 52.381 0.00 0.00 39.70 3.21
3927 5133 1.065926 TGTTCTAGGCTGTGGCTCATG 60.066 52.381 0.00 0.00 39.70 3.07
3928 5134 1.279496 TGTTCTAGGCTGTGGCTCAT 58.721 50.000 0.00 0.00 39.70 2.90
3929 5135 1.055849 TTGTTCTAGGCTGTGGCTCA 58.944 50.000 0.00 0.00 39.70 4.26
3930 5136 1.270839 TGTTGTTCTAGGCTGTGGCTC 60.271 52.381 0.00 0.00 39.70 4.70
3931 5137 0.764890 TGTTGTTCTAGGCTGTGGCT 59.235 50.000 0.00 0.00 42.39 4.75
3932 5138 1.160137 CTGTTGTTCTAGGCTGTGGC 58.840 55.000 0.00 0.00 37.82 5.01
3933 5139 2.417719 GTCTGTTGTTCTAGGCTGTGG 58.582 52.381 0.00 0.00 0.00 4.17
3934 5140 2.061773 CGTCTGTTGTTCTAGGCTGTG 58.938 52.381 0.00 0.00 0.00 3.66
3935 5141 1.687123 ACGTCTGTTGTTCTAGGCTGT 59.313 47.619 0.00 0.00 0.00 4.40
3936 5142 2.329379 GACGTCTGTTGTTCTAGGCTG 58.671 52.381 8.70 0.00 0.00 4.85
3937 5143 1.068472 CGACGTCTGTTGTTCTAGGCT 60.068 52.381 14.70 0.00 0.00 4.58
3938 5144 1.068748 TCGACGTCTGTTGTTCTAGGC 60.069 52.381 14.70 0.00 0.00 3.93
3939 5145 2.983402 TCGACGTCTGTTGTTCTAGG 57.017 50.000 14.70 0.00 0.00 3.02
3940 5146 6.312487 TCTTTATCGACGTCTGTTGTTCTAG 58.688 40.000 14.70 0.00 0.00 2.43
3941 5147 6.245115 TCTTTATCGACGTCTGTTGTTCTA 57.755 37.500 14.70 0.00 0.00 2.10
3942 5148 5.117355 TCTTTATCGACGTCTGTTGTTCT 57.883 39.130 14.70 0.00 0.00 3.01
3943 5149 5.817616 TTCTTTATCGACGTCTGTTGTTC 57.182 39.130 14.70 0.00 0.00 3.18
3944 5150 5.924254 TGATTCTTTATCGACGTCTGTTGTT 59.076 36.000 14.70 0.00 35.94 2.83
3945 5151 5.466819 TGATTCTTTATCGACGTCTGTTGT 58.533 37.500 14.70 0.00 35.94 3.32
3946 5152 5.004821 CCTGATTCTTTATCGACGTCTGTTG 59.995 44.000 14.70 0.00 35.94 3.33
3947 5153 5.103000 CCTGATTCTTTATCGACGTCTGTT 58.897 41.667 14.70 5.25 35.94 3.16
3948 5154 4.673441 CCTGATTCTTTATCGACGTCTGT 58.327 43.478 14.70 4.37 35.94 3.41
3949 5155 3.487574 GCCTGATTCTTTATCGACGTCTG 59.512 47.826 14.70 7.51 35.94 3.51
3950 5156 3.707793 GCCTGATTCTTTATCGACGTCT 58.292 45.455 14.70 0.00 35.94 4.18
3951 5157 2.468040 CGCCTGATTCTTTATCGACGTC 59.532 50.000 5.18 5.18 35.94 4.34
3952 5158 2.460918 CGCCTGATTCTTTATCGACGT 58.539 47.619 0.00 0.00 35.94 4.34
3953 5159 1.190323 GCGCCTGATTCTTTATCGACG 59.810 52.381 0.00 0.00 35.94 5.12
3954 5160 2.201732 TGCGCCTGATTCTTTATCGAC 58.798 47.619 4.18 0.00 35.94 4.20
3955 5161 2.595124 TGCGCCTGATTCTTTATCGA 57.405 45.000 4.18 0.00 35.94 3.59
3956 5162 2.663879 GCATGCGCCTGATTCTTTATCG 60.664 50.000 17.36 0.00 35.94 2.92
3957 5163 2.291465 TGCATGCGCCTGATTCTTTATC 59.709 45.455 17.36 0.00 37.32 1.75
3958 5164 2.292569 CTGCATGCGCCTGATTCTTTAT 59.707 45.455 17.36 0.00 37.32 1.40
3959 5165 1.672363 CTGCATGCGCCTGATTCTTTA 59.328 47.619 17.36 0.00 37.32 1.85
3960 5166 0.454600 CTGCATGCGCCTGATTCTTT 59.545 50.000 17.36 0.00 37.32 2.52
3961 5167 0.679002 ACTGCATGCGCCTGATTCTT 60.679 50.000 17.36 0.00 37.32 2.52
3962 5168 0.679002 AACTGCATGCGCCTGATTCT 60.679 50.000 17.36 0.00 37.32 2.40
3963 5169 0.248377 GAACTGCATGCGCCTGATTC 60.248 55.000 17.36 11.90 37.32 2.52
3964 5170 0.679002 AGAACTGCATGCGCCTGATT 60.679 50.000 17.36 6.90 37.32 2.57
3965 5171 1.077930 AGAACTGCATGCGCCTGAT 60.078 52.632 17.36 0.00 37.32 2.90
3966 5172 2.348620 AGAACTGCATGCGCCTGA 59.651 55.556 17.36 1.06 37.32 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.