Multiple sequence alignment - TraesCS7D01G530600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G530600 chr7D 100.000 2976 0 0 1 2976 625298211 625295236 0.000000e+00 5496
1 TraesCS7D01G530600 chr7D 83.718 694 78 23 180 852 625285930 625285251 9.060000e-175 623
2 TraesCS7D01G530600 chr7D 84.000 575 73 9 1495 2064 629236700 629237260 4.370000e-148 534
3 TraesCS7D01G530600 chr7D 91.057 369 31 2 1113 1479 47597268 47597636 5.730000e-137 497
4 TraesCS7D01G530600 chr7D 90.349 373 33 3 1113 1482 495329824 495330196 1.240000e-133 486
5 TraesCS7D01G530600 chr7D 90.489 368 34 1 1113 1479 597920820 597921187 4.460000e-133 484
6 TraesCS7D01G530600 chr7D 80.127 473 63 13 1592 2060 625283634 625283189 1.030000e-84 324
7 TraesCS7D01G530600 chr7B 88.791 1026 87 13 100 1107 723752393 723753408 0.000000e+00 1232
8 TraesCS7D01G530600 chr7B 93.322 614 36 4 1589 2199 723753428 723754039 0.000000e+00 902
9 TraesCS7D01G530600 chr7A 84.140 971 102 20 180 1107 720844998 720845959 0.000000e+00 893
10 TraesCS7D01G530600 chr7A 85.789 570 68 4 1495 2064 720845971 720846527 2.550000e-165 592
11 TraesCS7D01G530600 chr3B 82.868 788 110 12 2195 2976 573531143 573531911 0.000000e+00 684
12 TraesCS7D01G530600 chr6D 91.033 368 31 2 1113 1479 302038273 302037907 2.060000e-136 496
13 TraesCS7D01G530600 chr6D 91.033 368 32 1 1113 1479 373278748 373279115 2.060000e-136 496
14 TraesCS7D01G530600 chr2D 91.033 368 32 1 1113 1479 624267662 624267295 2.060000e-136 496
15 TraesCS7D01G530600 chr2D 90.489 368 34 1 1113 1479 549926490 549926123 4.460000e-133 484
16 TraesCS7D01G530600 chr2D 89.418 378 40 0 1113 1490 645793547 645793170 7.460000e-131 477
17 TraesCS7D01G530600 chr2D 80.479 292 43 10 2200 2483 255624525 255624810 8.360000e-51 211
18 TraesCS7D01G530600 chr5B 90.710 366 33 1 1109 1473 596829183 596828818 1.240000e-133 486
19 TraesCS7D01G530600 chr5B 87.467 383 37 2 1108 1479 475955287 475955669 5.890000e-117 431
20 TraesCS7D01G530600 chr3D 90.884 362 32 1 1113 1473 612707855 612708216 4.460000e-133 484
21 TraesCS7D01G530600 chr3D 76.404 445 56 29 2196 2612 180451903 180452326 8.420000e-46 195
22 TraesCS7D01G530600 chr2B 87.371 388 36 5 1116 1492 17448829 17449214 1.640000e-117 433
23 TraesCS7D01G530600 chr6B 77.285 766 125 33 2203 2933 34160551 34159800 3.570000e-109 405
24 TraesCS7D01G530600 chr6B 73.902 410 68 26 2203 2585 18200630 18200233 8.660000e-26 128
25 TraesCS7D01G530600 chr6B 100.000 61 0 0 2207 2267 47326222 47326162 2.420000e-21 113
26 TraesCS7D01G530600 chr6B 98.361 61 1 0 2207 2267 47363106 47363046 1.130000e-19 108
27 TraesCS7D01G530600 chr6B 98.361 61 1 0 2207 2267 47391361 47391301 1.130000e-19 108
28 TraesCS7D01G530600 chrUn 78.774 424 68 19 2565 2976 94146031 94146444 6.330000e-67 265
29 TraesCS7D01G530600 chr1B 73.704 810 149 46 2208 2976 41452627 41453413 1.060000e-64 257
30 TraesCS7D01G530600 chr3A 91.781 73 5 1 2196 2267 80546866 80546938 1.890000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G530600 chr7D 625295236 625298211 2975 True 5496.0 5496 100.0000 1 2976 1 chr7D.!!$R1 2975
1 TraesCS7D01G530600 chr7D 629236700 629237260 560 False 534.0 534 84.0000 1495 2064 1 chr7D.!!$F4 569
2 TraesCS7D01G530600 chr7D 625283189 625285930 2741 True 473.5 623 81.9225 180 2060 2 chr7D.!!$R2 1880
3 TraesCS7D01G530600 chr7B 723752393 723754039 1646 False 1067.0 1232 91.0565 100 2199 2 chr7B.!!$F1 2099
4 TraesCS7D01G530600 chr7A 720844998 720846527 1529 False 742.5 893 84.9645 180 2064 2 chr7A.!!$F1 1884
5 TraesCS7D01G530600 chr3B 573531143 573531911 768 False 684.0 684 82.8680 2195 2976 1 chr3B.!!$F1 781
6 TraesCS7D01G530600 chr6B 34159800 34160551 751 True 405.0 405 77.2850 2203 2933 1 chr6B.!!$R2 730
7 TraesCS7D01G530600 chr1B 41452627 41453413 786 False 257.0 257 73.7040 2208 2976 1 chr1B.!!$F1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 588 0.694444 GGGGGCTTGGAGGACTCATA 60.694 60.0 1.32 0.0 0.0 2.15 F
1289 1363 0.033504 GCCACGAGAGTTGGTTCTGA 59.966 55.0 0.00 0.0 46.4 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 1496 0.109153 GGGGACTGGTAAACGTGGTT 59.891 55.0 0.00 0.0 0.0 3.67 R
2321 3854 0.386838 ACGTACGGGCCTATAGCAAC 59.613 55.0 21.06 0.0 46.5 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.814577 GCCTTCTTCGACTGCTACA 57.185 52.632 0.00 0.00 0.00 2.74
19 20 2.301577 GCCTTCTTCGACTGCTACAT 57.698 50.000 0.00 0.00 0.00 2.29
20 21 2.197577 GCCTTCTTCGACTGCTACATC 58.802 52.381 0.00 0.00 0.00 3.06
21 22 2.815478 CCTTCTTCGACTGCTACATCC 58.185 52.381 0.00 0.00 0.00 3.51
22 23 2.428890 CCTTCTTCGACTGCTACATCCT 59.571 50.000 0.00 0.00 0.00 3.24
23 24 3.490078 CCTTCTTCGACTGCTACATCCTC 60.490 52.174 0.00 0.00 0.00 3.71
24 25 1.671328 TCTTCGACTGCTACATCCTCG 59.329 52.381 0.00 0.00 0.00 4.63
25 26 1.402259 CTTCGACTGCTACATCCTCGT 59.598 52.381 0.00 0.00 0.00 4.18
26 27 1.015109 TCGACTGCTACATCCTCGTC 58.985 55.000 0.00 0.00 0.00 4.20
27 28 0.733150 CGACTGCTACATCCTCGTCA 59.267 55.000 0.00 0.00 0.00 4.35
28 29 1.335182 CGACTGCTACATCCTCGTCAT 59.665 52.381 0.00 0.00 0.00 3.06
29 30 2.603412 CGACTGCTACATCCTCGTCATC 60.603 54.545 0.00 0.00 0.00 2.92
30 31 2.621055 GACTGCTACATCCTCGTCATCT 59.379 50.000 0.00 0.00 0.00 2.90
31 32 3.027412 ACTGCTACATCCTCGTCATCTT 58.973 45.455 0.00 0.00 0.00 2.40
32 33 3.067461 ACTGCTACATCCTCGTCATCTTC 59.933 47.826 0.00 0.00 0.00 2.87
33 34 3.023832 TGCTACATCCTCGTCATCTTCA 58.976 45.455 0.00 0.00 0.00 3.02
34 35 3.638627 TGCTACATCCTCGTCATCTTCAT 59.361 43.478 0.00 0.00 0.00 2.57
35 36 4.233789 GCTACATCCTCGTCATCTTCATC 58.766 47.826 0.00 0.00 0.00 2.92
36 37 4.261783 GCTACATCCTCGTCATCTTCATCA 60.262 45.833 0.00 0.00 0.00 3.07
37 38 4.052159 ACATCCTCGTCATCTTCATCAC 57.948 45.455 0.00 0.00 0.00 3.06
38 39 3.181471 ACATCCTCGTCATCTTCATCACC 60.181 47.826 0.00 0.00 0.00 4.02
39 40 2.456577 TCCTCGTCATCTTCATCACCA 58.543 47.619 0.00 0.00 0.00 4.17
40 41 2.831526 TCCTCGTCATCTTCATCACCAA 59.168 45.455 0.00 0.00 0.00 3.67
41 42 2.932614 CCTCGTCATCTTCATCACCAAC 59.067 50.000 0.00 0.00 0.00 3.77
42 43 2.600420 CTCGTCATCTTCATCACCAACG 59.400 50.000 0.00 0.00 0.00 4.10
43 44 2.029380 TCGTCATCTTCATCACCAACGT 60.029 45.455 0.00 0.00 0.00 3.99
44 45 2.736721 CGTCATCTTCATCACCAACGTT 59.263 45.455 0.00 0.00 0.00 3.99
45 46 3.423515 CGTCATCTTCATCACCAACGTTG 60.424 47.826 21.47 21.47 0.00 4.10
46 47 3.745975 GTCATCTTCATCACCAACGTTGA 59.254 43.478 29.35 10.60 0.00 3.18
47 48 4.393062 GTCATCTTCATCACCAACGTTGAT 59.607 41.667 29.35 10.33 0.00 2.57
48 49 5.580691 GTCATCTTCATCACCAACGTTGATA 59.419 40.000 29.35 14.00 0.00 2.15
49 50 6.258727 GTCATCTTCATCACCAACGTTGATAT 59.741 38.462 29.35 15.58 0.00 1.63
50 51 7.438160 GTCATCTTCATCACCAACGTTGATATA 59.562 37.037 29.35 11.87 0.00 0.86
51 52 7.653311 TCATCTTCATCACCAACGTTGATATAG 59.347 37.037 29.35 14.34 0.00 1.31
52 53 6.280643 TCTTCATCACCAACGTTGATATAGG 58.719 40.000 29.35 13.95 0.00 2.57
53 54 5.862678 TCATCACCAACGTTGATATAGGA 57.137 39.130 29.35 14.87 0.00 2.94
54 55 6.228616 TCATCACCAACGTTGATATAGGAA 57.771 37.500 29.35 6.19 0.00 3.36
55 56 6.645306 TCATCACCAACGTTGATATAGGAAA 58.355 36.000 29.35 5.85 0.00 3.13
56 57 7.279615 TCATCACCAACGTTGATATAGGAAAT 58.720 34.615 29.35 7.77 0.00 2.17
57 58 7.773224 TCATCACCAACGTTGATATAGGAAATT 59.227 33.333 29.35 0.82 0.00 1.82
58 59 7.548196 TCACCAACGTTGATATAGGAAATTC 57.452 36.000 29.35 0.00 0.00 2.17
59 60 6.540914 TCACCAACGTTGATATAGGAAATTCC 59.459 38.462 29.35 3.29 36.58 3.01
61 62 6.766467 ACCAACGTTGATATAGGAAATTCCTC 59.234 38.462 29.35 4.90 45.66 3.71
62 63 6.765989 CCAACGTTGATATAGGAAATTCCTCA 59.234 38.462 29.35 7.71 45.66 3.86
63 64 7.445402 CCAACGTTGATATAGGAAATTCCTCAT 59.555 37.037 29.35 12.83 45.66 2.90
64 65 8.840321 CAACGTTGATATAGGAAATTCCTCATT 58.160 33.333 23.90 7.49 45.66 2.57
65 66 8.383318 ACGTTGATATAGGAAATTCCTCATTG 57.617 34.615 19.11 8.27 45.66 2.82
66 67 7.041098 ACGTTGATATAGGAAATTCCTCATTGC 60.041 37.037 19.11 6.37 45.66 3.56
67 68 7.301054 GTTGATATAGGAAATTCCTCATTGCG 58.699 38.462 19.11 0.00 45.66 4.85
68 69 6.768483 TGATATAGGAAATTCCTCATTGCGA 58.232 36.000 19.11 0.00 45.66 5.10
69 70 7.397221 TGATATAGGAAATTCCTCATTGCGAT 58.603 34.615 19.11 7.10 45.66 4.58
70 71 7.550551 TGATATAGGAAATTCCTCATTGCGATC 59.449 37.037 19.11 11.41 45.66 3.69
71 72 2.874701 AGGAAATTCCTCATTGCGATCG 59.125 45.455 9.08 11.69 45.66 3.69
72 73 2.872245 GGAAATTCCTCATTGCGATCGA 59.128 45.455 21.57 0.00 32.53 3.59
73 74 3.059325 GGAAATTCCTCATTGCGATCGAG 60.059 47.826 21.57 6.54 32.53 4.04
74 75 2.898729 ATTCCTCATTGCGATCGAGT 57.101 45.000 21.57 0.00 0.00 4.18
75 76 4.322080 AATTCCTCATTGCGATCGAGTA 57.678 40.909 21.57 2.70 0.00 2.59
76 77 2.776312 TCCTCATTGCGATCGAGTAC 57.224 50.000 21.57 0.68 0.00 2.73
77 78 2.298610 TCCTCATTGCGATCGAGTACT 58.701 47.619 21.57 0.00 0.00 2.73
78 79 2.688446 TCCTCATTGCGATCGAGTACTT 59.312 45.455 21.57 0.00 0.00 2.24
79 80 3.046390 CCTCATTGCGATCGAGTACTTC 58.954 50.000 21.57 0.00 0.00 3.01
80 81 3.046390 CTCATTGCGATCGAGTACTTCC 58.954 50.000 21.57 0.00 0.00 3.46
81 82 2.128035 CATTGCGATCGAGTACTTCCC 58.872 52.381 21.57 0.00 0.00 3.97
82 83 1.179152 TTGCGATCGAGTACTTCCCA 58.821 50.000 21.57 0.09 0.00 4.37
83 84 1.399714 TGCGATCGAGTACTTCCCAT 58.600 50.000 21.57 0.00 0.00 4.00
84 85 1.754803 TGCGATCGAGTACTTCCCATT 59.245 47.619 21.57 0.00 0.00 3.16
85 86 2.223735 TGCGATCGAGTACTTCCCATTC 60.224 50.000 21.57 0.00 0.00 2.67
86 87 2.223735 GCGATCGAGTACTTCCCATTCA 60.224 50.000 21.57 0.00 0.00 2.57
87 88 3.737047 GCGATCGAGTACTTCCCATTCAA 60.737 47.826 21.57 0.00 0.00 2.69
88 89 4.621991 CGATCGAGTACTTCCCATTCAAT 58.378 43.478 10.26 0.00 0.00 2.57
89 90 5.769367 CGATCGAGTACTTCCCATTCAATA 58.231 41.667 10.26 0.00 0.00 1.90
90 91 6.390721 CGATCGAGTACTTCCCATTCAATAT 58.609 40.000 10.26 0.00 0.00 1.28
91 92 6.868864 CGATCGAGTACTTCCCATTCAATATT 59.131 38.462 10.26 0.00 0.00 1.28
92 93 8.027189 CGATCGAGTACTTCCCATTCAATATTA 58.973 37.037 10.26 0.00 0.00 0.98
93 94 9.877178 GATCGAGTACTTCCCATTCAATATTAT 57.123 33.333 0.00 0.00 0.00 1.28
136 137 5.418310 AACTACGTTTCATCTTGTTGGTG 57.582 39.130 0.00 0.00 0.00 4.17
137 138 4.448210 ACTACGTTTCATCTTGTTGGTGT 58.552 39.130 0.00 0.00 0.00 4.16
148 149 4.002982 TCTTGTTGGTGTAGATGACATGC 58.997 43.478 0.00 0.00 41.14 4.06
149 150 3.701205 TGTTGGTGTAGATGACATGCT 57.299 42.857 0.00 0.00 41.14 3.79
150 151 4.817318 TGTTGGTGTAGATGACATGCTA 57.183 40.909 0.00 0.00 41.14 3.49
151 152 4.758688 TGTTGGTGTAGATGACATGCTAG 58.241 43.478 0.00 0.00 41.14 3.42
152 153 4.222810 TGTTGGTGTAGATGACATGCTAGT 59.777 41.667 0.00 0.00 41.14 2.57
153 154 5.178797 GTTGGTGTAGATGACATGCTAGTT 58.821 41.667 0.00 0.00 41.14 2.24
154 155 5.420725 TGGTGTAGATGACATGCTAGTTT 57.579 39.130 0.00 0.00 41.14 2.66
222 223 5.914635 GTCATTCATGTTGTCGTTCATTTGT 59.085 36.000 0.00 0.00 0.00 2.83
334 336 3.118075 TGACCTCCATGTTGAGTTGTCAA 60.118 43.478 7.89 0.00 40.55 3.18
339 341 3.942115 TCCATGTTGAGTTGTCAAAACGA 59.058 39.130 0.00 0.00 44.44 3.85
386 388 4.021544 GTGATAGGTAGGCTCCTGAATCTG 60.022 50.000 13.65 0.00 38.41 2.90
478 482 5.988561 GCTTTTACATTGTCAAATGGGTTCA 59.011 36.000 0.00 0.00 46.34 3.18
510 516 7.406031 TCCTCTACTCTGTTGAACGAAATAT 57.594 36.000 0.00 0.00 0.00 1.28
579 586 2.610859 GGGGGCTTGGAGGACTCA 60.611 66.667 1.32 0.00 0.00 3.41
580 587 2.003548 GGGGGCTTGGAGGACTCAT 61.004 63.158 1.32 0.00 0.00 2.90
581 588 0.694444 GGGGGCTTGGAGGACTCATA 60.694 60.000 1.32 0.00 0.00 2.15
582 589 1.213296 GGGGCTTGGAGGACTCATAA 58.787 55.000 1.32 0.00 0.00 1.90
622 629 6.973229 AAAGCCTTTGAATAAATGCATGAC 57.027 33.333 0.00 0.00 39.12 3.06
666 674 8.443937 GGAAAATCCATATATGTCGCTAGAAAC 58.556 37.037 11.73 0.00 36.28 2.78
749 759 8.850452 CCGAAAATTAGTGACTAAATTCAAAGC 58.150 33.333 22.68 7.12 31.40 3.51
787 814 7.823745 AACCAAGACAAGACATACTTTCAAT 57.176 32.000 0.00 0.00 36.61 2.57
840 867 7.745015 ACAACAATAAGATGCAATGCAATTTC 58.255 30.769 13.45 5.51 43.62 2.17
849 895 3.882288 TGCAATGCAATTTCGGAGCTATA 59.118 39.130 5.01 0.00 34.76 1.31
858 904 6.690098 GCAATTTCGGAGCTATATAATGCATG 59.310 38.462 0.00 0.00 0.00 4.06
882 937 8.926715 TGTGATATAGCTTAAGGTATAATGCG 57.073 34.615 28.85 0.00 42.17 4.73
916 989 6.457392 GCTGCGAAGATCTGAAAAATGATACA 60.457 38.462 0.00 0.00 0.00 2.29
987 1060 1.725641 TCGGTCTGCACATCATTGTC 58.274 50.000 0.00 0.00 32.34 3.18
1003 1076 0.036732 TGTCAGAAGGACCACCATGC 59.963 55.000 0.00 0.00 46.38 4.06
1017 1090 4.015084 CCACCATGCTGATTCTTCTTCTT 58.985 43.478 0.00 0.00 0.00 2.52
1044 1117 3.620427 TTGCTCGCCTTTTCAGGTATA 57.380 42.857 0.00 0.00 43.18 1.47
1048 1121 4.202357 TGCTCGCCTTTTCAGGTATATGAT 60.202 41.667 0.00 0.00 43.18 2.45
1049 1122 4.153117 GCTCGCCTTTTCAGGTATATGATG 59.847 45.833 0.00 0.00 43.18 3.07
1061 1134 6.437162 TCAGGTATATGATGTCGAATCATCCA 59.563 38.462 19.55 9.45 42.24 3.41
1093 1167 8.243426 GGCAATTTTGTACTTCATCTTGATACA 58.757 33.333 0.00 0.00 0.00 2.29
1123 1197 9.541884 AATATATCCAGTACAAAGGTTTTGGTT 57.458 29.630 6.51 0.00 33.45 3.67
1125 1199 6.644248 ATCCAGTACAAAGGTTTTGGTTAC 57.356 37.500 6.51 1.66 33.45 2.50
1126 1200 4.888823 TCCAGTACAAAGGTTTTGGTTACC 59.111 41.667 0.00 0.00 33.45 2.85
1127 1201 4.261280 CCAGTACAAAGGTTTTGGTTACCG 60.261 45.833 6.51 0.00 40.69 4.02
1128 1202 3.884693 AGTACAAAGGTTTTGGTTACCGG 59.115 43.478 0.00 0.00 40.69 5.28
1129 1203 2.737544 ACAAAGGTTTTGGTTACCGGT 58.262 42.857 13.98 13.98 40.69 5.28
1130 1204 2.689471 ACAAAGGTTTTGGTTACCGGTC 59.311 45.455 12.40 0.00 40.69 4.79
1131 1205 1.596603 AAGGTTTTGGTTACCGGTCG 58.403 50.000 12.40 0.00 40.69 4.79
1132 1206 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
1133 1207 1.140652 AGGTTTTGGTTACCGGTCGAA 59.859 47.619 12.40 0.00 40.69 3.71
1134 1208 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
1135 1209 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
1136 1210 3.004629 GGTTTTGGTTACCGGTCGAAATT 59.995 43.478 12.40 0.00 0.00 1.82
1137 1211 4.499526 GGTTTTGGTTACCGGTCGAAATTT 60.500 41.667 12.40 0.00 0.00 1.82
1138 1212 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
1139 1213 3.123157 TGGTTACCGGTCGAAATTTCA 57.877 42.857 12.40 2.95 0.00 2.69
1140 1214 3.474600 TGGTTACCGGTCGAAATTTCAA 58.525 40.909 12.40 0.00 0.00 2.69
1141 1215 3.499157 TGGTTACCGGTCGAAATTTCAAG 59.501 43.478 12.40 3.07 0.00 3.02
1142 1216 3.747529 GGTTACCGGTCGAAATTTCAAGA 59.252 43.478 12.40 5.43 0.00 3.02
1143 1217 4.393990 GGTTACCGGTCGAAATTTCAAGAT 59.606 41.667 12.40 1.22 0.00 2.40
1144 1218 5.106436 GGTTACCGGTCGAAATTTCAAGATT 60.106 40.000 12.40 0.52 0.00 2.40
1145 1219 6.376177 GTTACCGGTCGAAATTTCAAGATTT 58.624 36.000 12.40 0.99 32.16 2.17
1146 1220 5.043189 ACCGGTCGAAATTTCAAGATTTC 57.957 39.130 17.99 0.00 40.80 2.17
1147 1221 4.082949 ACCGGTCGAAATTTCAAGATTTCC 60.083 41.667 17.99 5.39 41.02 3.13
1148 1222 4.412207 CGGTCGAAATTTCAAGATTTCCC 58.588 43.478 17.99 5.09 41.02 3.97
1149 1223 4.083003 CGGTCGAAATTTCAAGATTTCCCA 60.083 41.667 17.99 0.00 41.02 4.37
1150 1224 5.393027 CGGTCGAAATTTCAAGATTTCCCAT 60.393 40.000 17.99 0.00 41.02 4.00
1151 1225 5.807011 GGTCGAAATTTCAAGATTTCCCATG 59.193 40.000 17.99 0.00 41.02 3.66
1152 1226 6.350110 GGTCGAAATTTCAAGATTTCCCATGA 60.350 38.462 17.99 0.00 41.02 3.07
1153 1227 7.260603 GTCGAAATTTCAAGATTTCCCATGAT 58.739 34.615 17.99 0.00 41.02 2.45
1154 1228 7.761249 GTCGAAATTTCAAGATTTCCCATGATT 59.239 33.333 17.99 0.00 41.02 2.57
1155 1229 8.965819 TCGAAATTTCAAGATTTCCCATGATTA 58.034 29.630 17.99 0.00 41.02 1.75
1156 1230 9.023967 CGAAATTTCAAGATTTCCCATGATTAC 57.976 33.333 17.99 0.00 41.02 1.89
1157 1231 9.317936 GAAATTTCAAGATTTCCCATGATTACC 57.682 33.333 13.40 0.00 39.16 2.85
1158 1232 6.449635 TTTCAAGATTTCCCATGATTACCG 57.550 37.500 0.00 0.00 0.00 4.02
1159 1233 3.882888 TCAAGATTTCCCATGATTACCGC 59.117 43.478 0.00 0.00 0.00 5.68
1160 1234 3.576078 AGATTTCCCATGATTACCGCA 57.424 42.857 0.00 0.00 0.00 5.69
1161 1235 4.104383 AGATTTCCCATGATTACCGCAT 57.896 40.909 0.00 0.00 0.00 4.73
1162 1236 5.241403 AGATTTCCCATGATTACCGCATA 57.759 39.130 0.00 0.00 0.00 3.14
1163 1237 5.819991 AGATTTCCCATGATTACCGCATAT 58.180 37.500 0.00 0.00 0.00 1.78
1164 1238 6.248433 AGATTTCCCATGATTACCGCATATT 58.752 36.000 0.00 0.00 0.00 1.28
1165 1239 6.721208 AGATTTCCCATGATTACCGCATATTT 59.279 34.615 0.00 0.00 0.00 1.40
1166 1240 5.957842 TTCCCATGATTACCGCATATTTC 57.042 39.130 0.00 0.00 0.00 2.17
1167 1241 4.331968 TCCCATGATTACCGCATATTTCC 58.668 43.478 0.00 0.00 0.00 3.13
1168 1242 3.126858 CCCATGATTACCGCATATTTCCG 59.873 47.826 0.00 0.00 0.00 4.30
1169 1243 3.751175 CCATGATTACCGCATATTTCCGT 59.249 43.478 0.00 0.00 0.00 4.69
1170 1244 4.378356 CCATGATTACCGCATATTTCCGTG 60.378 45.833 0.00 0.00 0.00 4.94
1171 1245 2.546368 TGATTACCGCATATTTCCGTGC 59.454 45.455 0.00 0.00 37.97 5.34
1172 1246 1.301423 TTACCGCATATTTCCGTGCC 58.699 50.000 0.00 0.00 38.08 5.01
1173 1247 0.533308 TACCGCATATTTCCGTGCCC 60.533 55.000 0.00 0.00 38.08 5.36
1174 1248 2.551912 CCGCATATTTCCGTGCCCC 61.552 63.158 0.00 0.00 38.08 5.80
1175 1249 1.525995 CGCATATTTCCGTGCCCCT 60.526 57.895 0.00 0.00 38.08 4.79
1176 1250 1.507141 CGCATATTTCCGTGCCCCTC 61.507 60.000 0.00 0.00 38.08 4.30
1177 1251 1.507141 GCATATTTCCGTGCCCCTCG 61.507 60.000 0.00 0.00 35.35 4.63
1179 1253 1.342672 ATATTTCCGTGCCCCTCGGT 61.343 55.000 4.36 0.00 46.86 4.69
1180 1254 0.687098 TATTTCCGTGCCCCTCGGTA 60.687 55.000 4.36 0.00 46.86 4.02
1181 1255 1.555477 ATTTCCGTGCCCCTCGGTAA 61.555 55.000 4.36 1.98 46.86 2.85
1182 1256 1.766625 TTTCCGTGCCCCTCGGTAAA 61.767 55.000 4.36 2.21 46.86 2.01
1183 1257 1.555477 TTCCGTGCCCCTCGGTAAAT 61.555 55.000 4.36 0.00 46.86 1.40
1184 1258 1.523032 CCGTGCCCCTCGGTAAATC 60.523 63.158 0.00 0.00 42.62 2.17
1185 1259 1.219664 CGTGCCCCTCGGTAAATCA 59.780 57.895 0.00 0.00 0.00 2.57
1186 1260 1.087771 CGTGCCCCTCGGTAAATCAC 61.088 60.000 0.00 0.00 0.00 3.06
1187 1261 0.746923 GTGCCCCTCGGTAAATCACC 60.747 60.000 0.00 0.00 44.75 4.02
1201 1275 6.509418 GTAAATCACCATACCAAGCAAAGA 57.491 37.500 0.00 0.00 0.00 2.52
1202 1276 6.919721 GTAAATCACCATACCAAGCAAAGAA 58.080 36.000 0.00 0.00 0.00 2.52
1203 1277 6.610075 AAATCACCATACCAAGCAAAGAAT 57.390 33.333 0.00 0.00 0.00 2.40
1204 1278 7.716799 AAATCACCATACCAAGCAAAGAATA 57.283 32.000 0.00 0.00 0.00 1.75
1205 1279 6.699575 ATCACCATACCAAGCAAAGAATAC 57.300 37.500 0.00 0.00 0.00 1.89
1206 1280 4.947388 TCACCATACCAAGCAAAGAATACC 59.053 41.667 0.00 0.00 0.00 2.73
1207 1281 4.704540 CACCATACCAAGCAAAGAATACCA 59.295 41.667 0.00 0.00 0.00 3.25
1208 1282 5.360714 CACCATACCAAGCAAAGAATACCAT 59.639 40.000 0.00 0.00 0.00 3.55
1209 1283 5.957774 ACCATACCAAGCAAAGAATACCATT 59.042 36.000 0.00 0.00 0.00 3.16
1210 1284 6.440328 ACCATACCAAGCAAAGAATACCATTT 59.560 34.615 0.00 0.00 0.00 2.32
1211 1285 7.038373 ACCATACCAAGCAAAGAATACCATTTT 60.038 33.333 0.00 0.00 0.00 1.82
1212 1286 7.823799 CCATACCAAGCAAAGAATACCATTTTT 59.176 33.333 0.00 0.00 0.00 1.94
1275 1349 9.424319 AGTATGTAGAATCTAATTATTGCCACG 57.576 33.333 0.00 0.00 0.00 4.94
1276 1350 9.419297 GTATGTAGAATCTAATTATTGCCACGA 57.581 33.333 0.00 0.00 0.00 4.35
1277 1351 7.946655 TGTAGAATCTAATTATTGCCACGAG 57.053 36.000 0.00 0.00 0.00 4.18
1278 1352 7.722363 TGTAGAATCTAATTATTGCCACGAGA 58.278 34.615 0.00 0.00 0.00 4.04
1279 1353 7.867909 TGTAGAATCTAATTATTGCCACGAGAG 59.132 37.037 0.00 0.00 0.00 3.20
1281 1355 7.275920 AGAATCTAATTATTGCCACGAGAGTT 58.724 34.615 0.00 0.00 46.40 3.01
1282 1356 6.851222 ATCTAATTATTGCCACGAGAGTTG 57.149 37.500 0.00 0.00 46.40 3.16
1283 1357 5.116180 TCTAATTATTGCCACGAGAGTTGG 58.884 41.667 0.00 0.00 46.40 3.77
1284 1358 2.851263 TTATTGCCACGAGAGTTGGT 57.149 45.000 0.00 0.00 46.40 3.67
1285 1359 2.851263 TATTGCCACGAGAGTTGGTT 57.149 45.000 0.00 0.00 46.40 3.67
1286 1360 1.523758 ATTGCCACGAGAGTTGGTTC 58.476 50.000 0.00 0.00 46.40 3.62
1287 1361 0.468226 TTGCCACGAGAGTTGGTTCT 59.532 50.000 0.00 0.00 46.40 3.01
1288 1362 0.249868 TGCCACGAGAGTTGGTTCTG 60.250 55.000 0.00 0.00 46.40 3.02
1289 1363 0.033504 GCCACGAGAGTTGGTTCTGA 59.966 55.000 0.00 0.00 46.40 3.27
1290 1364 1.784525 CCACGAGAGTTGGTTCTGAC 58.215 55.000 0.00 0.00 46.40 3.51
1291 1365 1.409412 CACGAGAGTTGGTTCTGACG 58.591 55.000 0.00 0.00 46.40 4.35
1292 1366 1.030457 ACGAGAGTTGGTTCTGACGT 58.970 50.000 0.00 0.00 46.40 4.34
1293 1367 1.269102 ACGAGAGTTGGTTCTGACGTG 60.269 52.381 0.00 0.00 46.40 4.49
1294 1368 1.269102 CGAGAGTTGGTTCTGACGTGT 60.269 52.381 0.00 0.00 0.00 4.49
1295 1369 2.798499 CGAGAGTTGGTTCTGACGTGTT 60.798 50.000 0.00 0.00 0.00 3.32
1296 1370 2.540101 GAGAGTTGGTTCTGACGTGTTG 59.460 50.000 0.00 0.00 0.00 3.33
1297 1371 1.597663 GAGTTGGTTCTGACGTGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
1298 1372 1.065709 AGTTGGTTCTGACGTGTTGGT 60.066 47.619 0.00 0.00 0.00 3.67
1299 1373 2.168936 AGTTGGTTCTGACGTGTTGGTA 59.831 45.455 0.00 0.00 0.00 3.25
1300 1374 2.519377 TGGTTCTGACGTGTTGGTAG 57.481 50.000 0.00 0.00 0.00 3.18
1301 1375 1.145803 GGTTCTGACGTGTTGGTAGC 58.854 55.000 0.00 0.00 0.00 3.58
1302 1376 1.539496 GGTTCTGACGTGTTGGTAGCA 60.539 52.381 0.00 0.00 0.00 3.49
1303 1377 2.206750 GTTCTGACGTGTTGGTAGCAA 58.793 47.619 2.54 2.54 0.00 3.91
1304 1378 1.860676 TCTGACGTGTTGGTAGCAAC 58.139 50.000 26.90 26.90 35.75 4.17
1305 1379 0.865769 CTGACGTGTTGGTAGCAACC 59.134 55.000 29.46 20.70 46.98 3.77
1306 1380 0.466543 TGACGTGTTGGTAGCAACCT 59.533 50.000 29.46 15.29 46.91 3.50
1307 1381 1.687660 TGACGTGTTGGTAGCAACCTA 59.312 47.619 29.46 13.49 46.91 3.08
1308 1382 2.288579 TGACGTGTTGGTAGCAACCTAG 60.289 50.000 29.46 22.61 46.91 3.02
1309 1383 1.690352 ACGTGTTGGTAGCAACCTAGT 59.310 47.619 29.46 23.14 46.91 2.57
1310 1384 2.103601 ACGTGTTGGTAGCAACCTAGTT 59.896 45.455 29.46 10.90 46.91 2.24
1311 1385 2.735134 CGTGTTGGTAGCAACCTAGTTC 59.265 50.000 29.46 14.40 46.91 3.01
1312 1386 3.072211 GTGTTGGTAGCAACCTAGTTCC 58.928 50.000 29.46 7.82 46.91 3.62
1313 1387 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
1314 1388 3.244422 TGTTGGTAGCAACCTAGTTCCTG 60.244 47.826 29.46 0.00 46.91 3.86
1315 1389 2.897350 TGGTAGCAACCTAGTTCCTGA 58.103 47.619 0.00 0.00 46.91 3.86
1316 1390 3.450904 TGGTAGCAACCTAGTTCCTGAT 58.549 45.455 0.00 0.00 46.91 2.90
1317 1391 3.844211 TGGTAGCAACCTAGTTCCTGATT 59.156 43.478 0.00 0.00 46.91 2.57
1318 1392 4.288626 TGGTAGCAACCTAGTTCCTGATTT 59.711 41.667 0.00 0.00 46.91 2.17
1319 1393 4.636206 GGTAGCAACCTAGTTCCTGATTTG 59.364 45.833 0.00 0.00 43.08 2.32
1320 1394 4.640771 AGCAACCTAGTTCCTGATTTGA 57.359 40.909 0.00 0.00 0.00 2.69
1321 1395 4.583871 AGCAACCTAGTTCCTGATTTGAG 58.416 43.478 0.00 0.00 0.00 3.02
1322 1396 4.287067 AGCAACCTAGTTCCTGATTTGAGA 59.713 41.667 0.00 0.00 0.00 3.27
1323 1397 4.633565 GCAACCTAGTTCCTGATTTGAGAG 59.366 45.833 0.00 0.00 0.00 3.20
1324 1398 5.181748 CAACCTAGTTCCTGATTTGAGAGG 58.818 45.833 0.00 0.00 0.00 3.69
1325 1399 4.430441 ACCTAGTTCCTGATTTGAGAGGT 58.570 43.478 0.00 0.00 0.00 3.85
1326 1400 4.468153 ACCTAGTTCCTGATTTGAGAGGTC 59.532 45.833 0.00 0.00 28.54 3.85
1327 1401 4.714308 CCTAGTTCCTGATTTGAGAGGTCT 59.286 45.833 0.00 0.00 0.00 3.85
1328 1402 4.817318 AGTTCCTGATTTGAGAGGTCTC 57.183 45.455 0.00 0.00 43.15 3.36
1329 1403 4.424842 AGTTCCTGATTTGAGAGGTCTCT 58.575 43.478 8.44 0.00 43.25 3.10
1330 1404 4.222588 AGTTCCTGATTTGAGAGGTCTCTG 59.777 45.833 5.09 0.00 43.25 3.35
1331 1405 2.499289 TCCTGATTTGAGAGGTCTCTGC 59.501 50.000 5.09 0.00 43.25 4.26
1332 1406 2.500910 CCTGATTTGAGAGGTCTCTGCT 59.499 50.000 5.09 0.00 43.25 4.24
1333 1407 3.055240 CCTGATTTGAGAGGTCTCTGCTT 60.055 47.826 5.09 0.00 43.25 3.91
1334 1408 4.183101 CTGATTTGAGAGGTCTCTGCTTC 58.817 47.826 5.09 1.94 43.25 3.86
1335 1409 2.732412 TTTGAGAGGTCTCTGCTTCG 57.268 50.000 5.09 0.00 43.25 3.79
1336 1410 1.911057 TTGAGAGGTCTCTGCTTCGA 58.089 50.000 5.09 0.00 43.25 3.71
1337 1411 1.911057 TGAGAGGTCTCTGCTTCGAA 58.089 50.000 5.09 0.00 43.25 3.71
1338 1412 2.451490 TGAGAGGTCTCTGCTTCGAAT 58.549 47.619 5.09 0.00 43.25 3.34
1339 1413 2.165234 TGAGAGGTCTCTGCTTCGAATG 59.835 50.000 5.09 0.00 43.25 2.67
1340 1414 2.165437 GAGAGGTCTCTGCTTCGAATGT 59.835 50.000 5.09 0.00 40.61 2.71
1341 1415 2.564947 AGAGGTCTCTGCTTCGAATGTT 59.435 45.455 0.00 0.00 38.75 2.71
1342 1416 2.926838 GAGGTCTCTGCTTCGAATGTTC 59.073 50.000 0.00 0.00 0.00 3.18
1343 1417 6.682949 AGAGGTCTCTGCTTCGAATGTTCG 62.683 50.000 8.76 8.76 44.22 3.95
1360 1434 7.566858 AATGTTCGTTCATTCACTTATTTGC 57.433 32.000 2.99 0.00 33.43 3.68
1361 1435 6.066054 TGTTCGTTCATTCACTTATTTGCA 57.934 33.333 0.00 0.00 0.00 4.08
1362 1436 6.676950 TGTTCGTTCATTCACTTATTTGCAT 58.323 32.000 0.00 0.00 0.00 3.96
1363 1437 7.144661 TGTTCGTTCATTCACTTATTTGCATT 58.855 30.769 0.00 0.00 0.00 3.56
1364 1438 7.325821 TGTTCGTTCATTCACTTATTTGCATTC 59.674 33.333 0.00 0.00 0.00 2.67
1365 1439 6.907741 TCGTTCATTCACTTATTTGCATTCA 58.092 32.000 0.00 0.00 0.00 2.57
1366 1440 7.366513 TCGTTCATTCACTTATTTGCATTCAA 58.633 30.769 0.00 0.00 0.00 2.69
1367 1441 7.864882 TCGTTCATTCACTTATTTGCATTCAAA 59.135 29.630 0.00 0.00 45.24 2.69
1368 1442 8.486383 CGTTCATTCACTTATTTGCATTCAAAA 58.514 29.630 0.00 0.00 44.44 2.44
1372 1446 9.763465 CATTCACTTATTTGCATTCAAAATTCC 57.237 29.630 0.00 0.00 44.44 3.01
1373 1447 8.899427 TTCACTTATTTGCATTCAAAATTCCA 57.101 26.923 0.00 0.00 44.44 3.53
1374 1448 8.309163 TCACTTATTTGCATTCAAAATTCCAC 57.691 30.769 0.00 0.00 44.44 4.02
1375 1449 8.149647 TCACTTATTTGCATTCAAAATTCCACT 58.850 29.630 0.00 0.00 44.44 4.00
1376 1450 9.421806 CACTTATTTGCATTCAAAATTCCACTA 57.578 29.630 0.00 0.00 44.44 2.74
1405 1479 9.716507 AAATTTGTTCGAAATATTCTCGGTATG 57.283 29.630 0.00 0.00 36.93 2.39
1406 1480 7.837202 TTTGTTCGAAATATTCTCGGTATGT 57.163 32.000 0.00 0.00 36.93 2.29
1407 1481 7.459394 TTGTTCGAAATATTCTCGGTATGTC 57.541 36.000 0.00 0.00 36.93 3.06
1408 1482 6.802608 TGTTCGAAATATTCTCGGTATGTCT 58.197 36.000 0.00 0.00 36.93 3.41
1409 1483 6.916387 TGTTCGAAATATTCTCGGTATGTCTC 59.084 38.462 0.00 0.00 36.93 3.36
1410 1484 5.686834 TCGAAATATTCTCGGTATGTCTCG 58.313 41.667 15.30 6.03 36.93 4.04
1411 1485 4.852104 CGAAATATTCTCGGTATGTCTCGG 59.148 45.833 10.37 0.00 32.62 4.63
1412 1486 5.562307 CGAAATATTCTCGGTATGTCTCGGT 60.562 44.000 10.37 0.00 32.62 4.69
1413 1487 6.347969 CGAAATATTCTCGGTATGTCTCGGTA 60.348 42.308 10.37 0.00 32.62 4.02
1414 1488 6.889301 AATATTCTCGGTATGTCTCGGTAA 57.111 37.500 0.00 0.00 0.00 2.85
1415 1489 4.564940 ATTCTCGGTATGTCTCGGTAAC 57.435 45.455 0.00 0.00 0.00 2.50
1416 1490 2.292267 TCTCGGTATGTCTCGGTAACC 58.708 52.381 0.00 0.00 0.00 2.85
1438 1512 4.457433 GTGTTAACCACGTTTACCAGTC 57.543 45.455 2.48 0.00 33.61 3.51
1439 1513 3.248363 GTGTTAACCACGTTTACCAGTCC 59.752 47.826 2.48 0.00 33.61 3.85
1440 1514 2.807967 GTTAACCACGTTTACCAGTCCC 59.192 50.000 0.00 0.00 0.00 4.46
1441 1515 0.109153 AACCACGTTTACCAGTCCCC 59.891 55.000 0.00 0.00 0.00 4.81
1442 1516 0.765519 ACCACGTTTACCAGTCCCCT 60.766 55.000 0.00 0.00 0.00 4.79
1443 1517 0.399075 CCACGTTTACCAGTCCCCTT 59.601 55.000 0.00 0.00 0.00 3.95
1444 1518 1.609841 CCACGTTTACCAGTCCCCTTC 60.610 57.143 0.00 0.00 0.00 3.46
1445 1519 0.319405 ACGTTTACCAGTCCCCTTCG 59.681 55.000 0.00 0.00 0.00 3.79
1446 1520 0.390735 CGTTTACCAGTCCCCTTCGG 60.391 60.000 0.00 0.00 0.00 4.30
1447 1521 0.689055 GTTTACCAGTCCCCTTCGGT 59.311 55.000 0.00 0.00 35.46 4.69
1448 1522 1.901833 GTTTACCAGTCCCCTTCGGTA 59.098 52.381 0.00 0.00 32.81 4.02
1449 1523 2.302733 GTTTACCAGTCCCCTTCGGTAA 59.697 50.000 0.00 0.00 41.16 2.85
1450 1524 2.323999 TACCAGTCCCCTTCGGTAAA 57.676 50.000 0.00 0.00 31.10 2.01
1451 1525 1.437397 ACCAGTCCCCTTCGGTAAAA 58.563 50.000 0.00 0.00 0.00 1.52
1452 1526 1.990327 ACCAGTCCCCTTCGGTAAAAT 59.010 47.619 0.00 0.00 0.00 1.82
1453 1527 2.377531 ACCAGTCCCCTTCGGTAAAATT 59.622 45.455 0.00 0.00 0.00 1.82
1454 1528 2.752903 CCAGTCCCCTTCGGTAAAATTG 59.247 50.000 0.00 0.00 0.00 2.32
1455 1529 2.163613 CAGTCCCCTTCGGTAAAATTGC 59.836 50.000 0.00 0.00 0.00 3.56
1456 1530 1.475280 GTCCCCTTCGGTAAAATTGCC 59.525 52.381 0.00 0.00 0.00 4.52
1457 1531 1.356398 TCCCCTTCGGTAAAATTGCCT 59.644 47.619 0.00 0.00 0.00 4.75
1458 1532 1.749063 CCCCTTCGGTAAAATTGCCTC 59.251 52.381 0.00 0.00 0.00 4.70
1459 1533 2.442413 CCCTTCGGTAAAATTGCCTCA 58.558 47.619 0.00 0.00 0.00 3.86
1460 1534 3.023832 CCCTTCGGTAAAATTGCCTCAT 58.976 45.455 0.00 0.00 0.00 2.90
1461 1535 3.447229 CCCTTCGGTAAAATTGCCTCATT 59.553 43.478 0.00 0.00 0.00 2.57
1462 1536 4.440112 CCCTTCGGTAAAATTGCCTCATTC 60.440 45.833 0.00 0.00 0.00 2.67
1463 1537 4.342772 CTTCGGTAAAATTGCCTCATTCG 58.657 43.478 0.00 0.00 0.00 3.34
1464 1538 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
1465 1539 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
1466 1540 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
1467 1541 4.260620 CGGTAAAATTGCCTCATTCGGTAG 60.261 45.833 0.00 0.00 0.00 3.18
1468 1542 3.782889 AAAATTGCCTCATTCGGTAGC 57.217 42.857 0.00 0.00 0.00 3.58
1469 1543 1.680338 AATTGCCTCATTCGGTAGCC 58.320 50.000 0.00 0.00 0.00 3.93
1470 1544 0.546122 ATTGCCTCATTCGGTAGCCA 59.454 50.000 0.00 0.00 0.00 4.75
1471 1545 0.326595 TTGCCTCATTCGGTAGCCAA 59.673 50.000 0.00 0.00 0.00 4.52
1472 1546 0.326595 TGCCTCATTCGGTAGCCAAA 59.673 50.000 0.00 0.00 0.00 3.28
1473 1547 1.271652 TGCCTCATTCGGTAGCCAAAA 60.272 47.619 0.00 0.00 0.00 2.44
1474 1548 2.024414 GCCTCATTCGGTAGCCAAAAT 58.976 47.619 0.00 0.00 0.00 1.82
1475 1549 2.033424 GCCTCATTCGGTAGCCAAAATC 59.967 50.000 0.00 0.00 0.00 2.17
1476 1550 3.545703 CCTCATTCGGTAGCCAAAATCT 58.454 45.455 0.00 0.00 0.00 2.40
1477 1551 3.947834 CCTCATTCGGTAGCCAAAATCTT 59.052 43.478 0.00 0.00 0.00 2.40
1478 1552 4.201950 CCTCATTCGGTAGCCAAAATCTTG 60.202 45.833 0.00 0.00 0.00 3.02
1479 1553 4.331968 TCATTCGGTAGCCAAAATCTTGT 58.668 39.130 0.00 0.00 0.00 3.16
1480 1554 4.394920 TCATTCGGTAGCCAAAATCTTGTC 59.605 41.667 0.00 0.00 0.00 3.18
1481 1555 2.706890 TCGGTAGCCAAAATCTTGTCC 58.293 47.619 0.00 0.00 0.00 4.02
1482 1556 1.396996 CGGTAGCCAAAATCTTGTCCG 59.603 52.381 0.00 0.00 0.00 4.79
1483 1557 1.743394 GGTAGCCAAAATCTTGTCCGG 59.257 52.381 0.00 0.00 0.00 5.14
1484 1558 2.433436 GTAGCCAAAATCTTGTCCGGT 58.567 47.619 0.00 0.00 0.00 5.28
1485 1559 2.871096 AGCCAAAATCTTGTCCGGTA 57.129 45.000 0.00 0.00 0.00 4.02
1486 1560 2.433436 AGCCAAAATCTTGTCCGGTAC 58.567 47.619 0.00 0.00 0.00 3.34
1487 1561 2.156098 GCCAAAATCTTGTCCGGTACA 58.844 47.619 0.00 1.42 35.88 2.90
1488 1562 2.095415 GCCAAAATCTTGTCCGGTACAC 60.095 50.000 0.00 0.00 38.00 2.90
1489 1563 3.142951 CCAAAATCTTGTCCGGTACACA 58.857 45.455 0.00 0.00 38.00 3.72
1490 1564 3.756434 CCAAAATCTTGTCCGGTACACAT 59.244 43.478 0.00 0.00 38.00 3.21
1491 1565 4.142687 CCAAAATCTTGTCCGGTACACATC 60.143 45.833 0.00 0.00 38.00 3.06
1492 1566 2.981859 ATCTTGTCCGGTACACATCC 57.018 50.000 0.00 0.00 38.00 3.51
1493 1567 0.899720 TCTTGTCCGGTACACATCCC 59.100 55.000 0.00 0.00 38.00 3.85
1529 1603 3.787785 ACCAAATACGTATGACGATGCA 58.212 40.909 9.24 0.00 46.05 3.96
1534 1608 6.531594 CCAAATACGTATGACGATGCATAGAT 59.468 38.462 14.19 0.14 46.05 1.98
1575 1650 7.116736 GGAGTTTGATCATTTTACCCTCCTAA 58.883 38.462 0.00 0.00 34.49 2.69
1603 3116 8.825667 TTTCTGTATTTGCCTTGTTAATTTCC 57.174 30.769 0.00 0.00 0.00 3.13
1643 3156 3.269381 AGGCCCAATCAAAGGAGAACATA 59.731 43.478 0.00 0.00 0.00 2.29
1659 3172 5.263599 AGAACATAATTTGGATGCAGGTGA 58.736 37.500 0.00 0.00 0.00 4.02
1664 3177 1.838112 TTTGGATGCAGGTGATGGTC 58.162 50.000 0.00 0.00 0.00 4.02
1779 3292 1.634973 TGGTCATTTGCCTCATCCTCA 59.365 47.619 0.00 0.00 0.00 3.86
1798 3311 2.134287 GCCTCTATCGACCCTGCCA 61.134 63.158 0.00 0.00 0.00 4.92
1876 3390 4.502263 GCAGCAGCATGTCTCGTA 57.498 55.556 0.00 0.00 41.58 3.43
1979 3493 6.640518 ACTAGTCCGTCATTACATTGATGTT 58.359 36.000 1.46 0.00 41.97 2.71
2100 3621 5.376854 TTTCTTTAAGATCCAGCAACTGC 57.623 39.130 0.00 0.00 42.49 4.40
2119 3640 6.588719 ACTGCTGGCTTTTGTATTATCAAA 57.411 33.333 0.00 0.00 35.83 2.69
2142 3663 7.784470 AAGTAGGGAGCAGTATTTAGATAGG 57.216 40.000 0.00 0.00 0.00 2.57
2144 3665 7.179269 AGTAGGGAGCAGTATTTAGATAGGAG 58.821 42.308 0.00 0.00 0.00 3.69
2147 3668 4.081365 GGAGCAGTATTTAGATAGGAGCCC 60.081 50.000 0.00 0.00 0.00 5.19
2148 3669 4.757692 AGCAGTATTTAGATAGGAGCCCT 58.242 43.478 0.00 0.00 37.71 5.19
2150 3671 5.012561 AGCAGTATTTAGATAGGAGCCCTTG 59.987 44.000 0.00 0.00 34.61 3.61
2153 3674 7.093289 GCAGTATTTAGATAGGAGCCCTTGATA 60.093 40.741 0.00 0.00 34.61 2.15
2156 3677 3.527507 AGATAGGAGCCCTTGATACGA 57.472 47.619 0.00 0.00 34.61 3.43
2181 3702 9.411189 GACTTAAGGAGAGAAGTTAGAGGAATA 57.589 37.037 7.53 0.00 36.04 1.75
2323 3856 4.705519 CGCACGGTCGTACGGGTT 62.706 66.667 16.52 0.00 39.99 4.11
2330 3863 1.334419 CGGTCGTACGGGTTGCTATAG 60.334 57.143 16.52 0.00 0.00 1.31
2392 3937 1.323534 GTCCACGCGCATACTTAAGTG 59.676 52.381 18.56 4.37 0.00 3.16
2436 3981 2.989055 AATCCGGCGCAGATTACGGG 62.989 60.000 19.76 3.91 45.97 5.28
2437 3982 4.524318 CCGGCGCAGATTACGGGT 62.524 66.667 10.83 0.00 42.48 5.28
2511 4082 2.398554 GCGGTGCCGATTCACATGT 61.399 57.895 15.45 0.00 42.83 3.21
2519 4090 1.470805 CCGATTCACATGTCACCGCTA 60.471 52.381 0.00 0.00 0.00 4.26
2524 4095 0.246360 CACATGTCACCGCTAGACCA 59.754 55.000 0.00 0.00 35.15 4.02
2530 4101 2.603473 ACCGCTAGACCACCTGCA 60.603 61.111 0.00 0.00 0.00 4.41
2533 4104 1.219124 CGCTAGACCACCTGCACAT 59.781 57.895 0.00 0.00 0.00 3.21
2618 4190 0.805711 GCATTAATTGCCGCCACCAC 60.806 55.000 0.00 0.00 46.15 4.16
2654 4228 1.604693 CGCCGCTATAAAATCCGTCCT 60.605 52.381 0.00 0.00 0.00 3.85
2655 4229 1.798813 GCCGCTATAAAATCCGTCCTG 59.201 52.381 0.00 0.00 0.00 3.86
2661 4235 0.108041 TAAAATCCGTCCTGGGCGTC 60.108 55.000 20.45 0.00 38.76 5.19
2662 4236 2.119484 AAAATCCGTCCTGGGCGTCA 62.119 55.000 20.45 5.96 38.76 4.35
2688 4265 2.765807 CTCATCCCGTGCCTCCCT 60.766 66.667 0.00 0.00 0.00 4.20
2708 4285 1.211969 CTCGCCTTCCTTCGACGAA 59.788 57.895 10.34 10.34 31.60 3.85
2719 4296 1.216941 TTCGACGAAAACACGCCTCC 61.217 55.000 8.05 0.00 36.70 4.30
2720 4297 2.664436 CGACGAAAACACGCCTCCC 61.664 63.158 0.00 0.00 36.70 4.30
2782 4380 2.438614 CCTGACGCTCGAGGAGGA 60.439 66.667 15.58 0.00 0.00 3.71
2798 4396 2.841988 GAGGAGGAGCTCGCCCAT 60.842 66.667 20.70 5.78 35.80 4.00
2802 4400 0.681243 GGAGGAGCTCGCCCATTTTT 60.681 55.000 15.64 0.00 0.00 1.94
2803 4401 0.453390 GAGGAGCTCGCCCATTTTTG 59.547 55.000 7.83 0.00 0.00 2.44
2861 4459 4.170062 CGGCTTAGCGTCGACGGA 62.170 66.667 36.13 2.65 40.23 4.69
2906 4504 4.329545 GGCACCCACCTCTTCGCA 62.330 66.667 0.00 0.00 0.00 5.10
2907 4505 2.045926 GCACCCACCTCTTCGCAT 60.046 61.111 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.197577 GATGTAGCAGTCGAAGAAGGC 58.802 52.381 0.00 0.00 39.69 4.35
1 2 2.428890 AGGATGTAGCAGTCGAAGAAGG 59.571 50.000 0.00 0.00 39.69 3.46
2 3 3.701241 GAGGATGTAGCAGTCGAAGAAG 58.299 50.000 0.00 0.00 39.69 2.85
3 4 2.097629 CGAGGATGTAGCAGTCGAAGAA 59.902 50.000 0.00 0.00 39.69 2.52
4 5 1.671328 CGAGGATGTAGCAGTCGAAGA 59.329 52.381 0.00 0.00 32.32 2.87
5 6 1.402259 ACGAGGATGTAGCAGTCGAAG 59.598 52.381 0.00 0.00 34.72 3.79
7 8 1.015109 GACGAGGATGTAGCAGTCGA 58.985 55.000 0.00 0.00 34.72 4.20
8 9 0.733150 TGACGAGGATGTAGCAGTCG 59.267 55.000 0.00 0.00 36.71 4.18
9 10 2.621055 AGATGACGAGGATGTAGCAGTC 59.379 50.000 0.00 0.00 0.00 3.51
10 11 2.660572 AGATGACGAGGATGTAGCAGT 58.339 47.619 0.00 0.00 0.00 4.40
11 12 3.067320 TGAAGATGACGAGGATGTAGCAG 59.933 47.826 0.00 0.00 0.00 4.24
12 13 3.023832 TGAAGATGACGAGGATGTAGCA 58.976 45.455 0.00 0.00 0.00 3.49
13 14 3.717400 TGAAGATGACGAGGATGTAGC 57.283 47.619 0.00 0.00 0.00 3.58
14 15 5.218885 GTGATGAAGATGACGAGGATGTAG 58.781 45.833 0.00 0.00 0.00 2.74
15 16 4.038042 GGTGATGAAGATGACGAGGATGTA 59.962 45.833 0.00 0.00 0.00 2.29
16 17 3.181471 GGTGATGAAGATGACGAGGATGT 60.181 47.826 0.00 0.00 0.00 3.06
17 18 3.181472 TGGTGATGAAGATGACGAGGATG 60.181 47.826 0.00 0.00 0.00 3.51
18 19 3.033909 TGGTGATGAAGATGACGAGGAT 58.966 45.455 0.00 0.00 0.00 3.24
19 20 2.456577 TGGTGATGAAGATGACGAGGA 58.543 47.619 0.00 0.00 0.00 3.71
20 21 2.932614 GTTGGTGATGAAGATGACGAGG 59.067 50.000 0.00 0.00 0.00 4.63
21 22 2.600420 CGTTGGTGATGAAGATGACGAG 59.400 50.000 0.00 0.00 0.00 4.18
22 23 2.029380 ACGTTGGTGATGAAGATGACGA 60.029 45.455 0.00 0.00 33.86 4.20
23 24 2.337583 ACGTTGGTGATGAAGATGACG 58.662 47.619 0.00 0.00 35.59 4.35
24 25 3.745975 TCAACGTTGGTGATGAAGATGAC 59.254 43.478 27.02 0.00 0.00 3.06
25 26 4.001618 TCAACGTTGGTGATGAAGATGA 57.998 40.909 27.02 0.76 0.00 2.92
26 27 4.952262 ATCAACGTTGGTGATGAAGATG 57.048 40.909 27.02 0.00 0.00 2.90
27 28 6.931281 CCTATATCAACGTTGGTGATGAAGAT 59.069 38.462 27.02 11.65 0.00 2.40
28 29 6.097696 TCCTATATCAACGTTGGTGATGAAGA 59.902 38.462 27.02 11.65 0.00 2.87
29 30 6.280643 TCCTATATCAACGTTGGTGATGAAG 58.719 40.000 27.02 14.33 0.00 3.02
30 31 6.228616 TCCTATATCAACGTTGGTGATGAA 57.771 37.500 27.02 5.91 0.00 2.57
31 32 5.862678 TCCTATATCAACGTTGGTGATGA 57.137 39.130 27.02 13.36 0.00 2.92
32 33 6.918892 TTTCCTATATCAACGTTGGTGATG 57.081 37.500 27.02 13.99 0.00 3.07
33 34 7.228706 GGAATTTCCTATATCAACGTTGGTGAT 59.771 37.037 27.02 16.40 32.53 3.06
34 35 6.540914 GGAATTTCCTATATCAACGTTGGTGA 59.459 38.462 27.02 11.56 32.53 4.02
35 36 6.725246 GGAATTTCCTATATCAACGTTGGTG 58.275 40.000 27.02 9.27 32.53 4.17
36 37 6.937436 GGAATTTCCTATATCAACGTTGGT 57.063 37.500 27.02 23.44 32.53 3.67
51 52 2.872245 TCGATCGCAATGAGGAATTTCC 59.128 45.455 11.09 7.39 36.58 3.13
52 53 3.557595 ACTCGATCGCAATGAGGAATTTC 59.442 43.478 11.09 0.00 34.03 2.17
53 54 3.535561 ACTCGATCGCAATGAGGAATTT 58.464 40.909 11.09 0.00 34.03 1.82
54 55 3.185246 ACTCGATCGCAATGAGGAATT 57.815 42.857 11.09 0.00 34.03 2.17
55 56 2.898729 ACTCGATCGCAATGAGGAAT 57.101 45.000 11.09 0.00 34.03 3.01
56 57 2.688446 AGTACTCGATCGCAATGAGGAA 59.312 45.455 11.09 0.00 34.03 3.36
57 58 2.298610 AGTACTCGATCGCAATGAGGA 58.701 47.619 11.09 0.00 34.03 3.71
58 59 2.783828 AGTACTCGATCGCAATGAGG 57.216 50.000 11.09 0.00 34.03 3.86
59 60 3.046390 GGAAGTACTCGATCGCAATGAG 58.954 50.000 11.09 4.60 35.85 2.90
60 61 2.223735 GGGAAGTACTCGATCGCAATGA 60.224 50.000 11.09 0.00 0.00 2.57
61 62 2.128035 GGGAAGTACTCGATCGCAATG 58.872 52.381 11.09 3.06 0.00 2.82
62 63 1.754803 TGGGAAGTACTCGATCGCAAT 59.245 47.619 11.09 0.17 33.74 3.56
63 64 1.179152 TGGGAAGTACTCGATCGCAA 58.821 50.000 11.09 0.00 33.74 4.85
64 65 1.399714 ATGGGAAGTACTCGATCGCA 58.600 50.000 11.09 13.32 39.81 5.10
65 66 2.223735 TGAATGGGAAGTACTCGATCGC 60.224 50.000 11.09 0.00 0.00 4.58
66 67 3.710326 TGAATGGGAAGTACTCGATCG 57.290 47.619 9.36 9.36 0.00 3.69
67 68 9.877178 ATAATATTGAATGGGAAGTACTCGATC 57.123 33.333 0.00 0.00 0.00 3.69
95 96 9.498176 ACGTAGTTCCATAGAAAACTAAATTGT 57.502 29.630 0.00 0.00 37.78 2.71
124 125 5.448225 GCATGTCATCTACACCAACAAGATG 60.448 44.000 5.41 5.41 45.19 2.90
334 336 4.578516 TCACCATCACATTCAAACTCGTTT 59.421 37.500 0.00 0.00 0.00 3.60
339 341 6.716628 ACTATGTTCACCATCACATTCAAACT 59.283 34.615 0.00 0.00 35.24 2.66
349 351 6.267699 CCTACCTATCACTATGTTCACCATCA 59.732 42.308 0.00 0.00 34.86 3.07
455 459 8.606040 ATTGAACCCATTTGACAATGTAAAAG 57.394 30.769 2.06 0.00 38.58 2.27
547 553 1.623811 GCCCCCATAGTACACGATGAT 59.376 52.381 4.27 0.00 31.77 2.45
548 554 1.045407 GCCCCCATAGTACACGATGA 58.955 55.000 4.27 0.00 31.77 2.92
749 759 4.278170 TGTCTTGGTTTTGGTGCTCATAAG 59.722 41.667 0.00 0.00 0.00 1.73
761 771 7.639113 TGAAAGTATGTCTTGTCTTGGTTTT 57.361 32.000 0.00 0.00 36.40 2.43
787 814 9.443323 TCCGAAAGATTTCTCATTTAATGTGTA 57.557 29.630 4.77 0.00 35.07 2.90
803 830 8.345565 GCATCTTATTGTTGTATCCGAAAGATT 58.654 33.333 0.00 0.00 36.33 2.40
810 837 5.626543 GCATTGCATCTTATTGTTGTATCCG 59.373 40.000 3.15 0.00 0.00 4.18
840 867 9.351570 CTATATCACATGCATTATATAGCTCCG 57.648 37.037 18.52 0.92 31.60 4.63
858 904 8.928270 ACGCATTATACCTTAAGCTATATCAC 57.072 34.615 0.00 0.00 0.00 3.06
882 937 0.674895 ATCTTCGCAGCACCCTCAAC 60.675 55.000 0.00 0.00 0.00 3.18
916 989 9.838339 CAACCTACATTTATAGATTCTTGGACT 57.162 33.333 0.00 0.00 0.00 3.85
987 1060 0.325933 TCAGCATGGTGGTCCTTCTG 59.674 55.000 23.85 5.05 36.16 3.02
1003 1076 4.756084 AAACCGCAAGAAGAAGAATCAG 57.244 40.909 0.00 0.00 43.02 2.90
1061 1134 8.757982 AGATGAAGTACAAAATTGCCATAGAT 57.242 30.769 0.00 0.00 0.00 1.98
1067 1140 8.243426 TGTATCAAGATGAAGTACAAAATTGCC 58.757 33.333 0.00 0.00 0.00 4.52
1107 1181 3.631686 ACCGGTAACCAAAACCTTTGTAC 59.368 43.478 4.49 0.00 34.66 2.90
1110 1184 2.287129 CGACCGGTAACCAAAACCTTTG 60.287 50.000 7.34 0.00 34.66 2.77
1112 1186 1.140652 TCGACCGGTAACCAAAACCTT 59.859 47.619 7.34 0.00 34.66 3.50
1115 1189 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
1116 1190 4.337555 TGAAATTTCGACCGGTAACCAAAA 59.662 37.500 7.34 4.39 0.00 2.44
1117 1191 3.881688 TGAAATTTCGACCGGTAACCAAA 59.118 39.130 7.34 4.53 0.00 3.28
1118 1192 3.474600 TGAAATTTCGACCGGTAACCAA 58.525 40.909 7.34 0.00 0.00 3.67
1119 1193 3.123157 TGAAATTTCGACCGGTAACCA 57.877 42.857 7.34 0.00 0.00 3.67
1120 1194 3.747529 TCTTGAAATTTCGACCGGTAACC 59.252 43.478 7.34 0.00 0.00 2.85
1121 1195 4.996062 TCTTGAAATTTCGACCGGTAAC 57.004 40.909 7.34 0.00 0.00 2.50
1122 1196 6.348704 GGAAATCTTGAAATTTCGACCGGTAA 60.349 38.462 7.34 0.00 43.52 2.85
1123 1197 5.122711 GGAAATCTTGAAATTTCGACCGGTA 59.877 40.000 7.34 0.00 43.52 4.02
1124 1198 4.082949 GGAAATCTTGAAATTTCGACCGGT 60.083 41.667 6.92 6.92 43.52 5.28
1125 1199 4.412207 GGAAATCTTGAAATTTCGACCGG 58.588 43.478 13.34 0.00 43.52 5.28
1126 1200 4.083003 TGGGAAATCTTGAAATTTCGACCG 60.083 41.667 13.34 1.46 43.52 4.79
1127 1201 5.385509 TGGGAAATCTTGAAATTTCGACC 57.614 39.130 13.34 8.29 43.52 4.79
1128 1202 6.620678 TCATGGGAAATCTTGAAATTTCGAC 58.379 36.000 13.34 0.00 43.52 4.20
1129 1203 6.832520 TCATGGGAAATCTTGAAATTTCGA 57.167 33.333 13.34 10.62 43.52 3.71
1130 1204 9.023967 GTAATCATGGGAAATCTTGAAATTTCG 57.976 33.333 13.34 0.46 43.52 3.46
1131 1205 9.317936 GGTAATCATGGGAAATCTTGAAATTTC 57.682 33.333 11.41 11.41 42.41 2.17
1132 1206 7.981225 CGGTAATCATGGGAAATCTTGAAATTT 59.019 33.333 0.00 0.00 0.00 1.82
1133 1207 7.491682 CGGTAATCATGGGAAATCTTGAAATT 58.508 34.615 0.00 0.00 0.00 1.82
1134 1208 6.461509 GCGGTAATCATGGGAAATCTTGAAAT 60.462 38.462 0.00 0.00 0.00 2.17
1135 1209 5.163561 GCGGTAATCATGGGAAATCTTGAAA 60.164 40.000 0.00 0.00 0.00 2.69
1136 1210 4.338118 GCGGTAATCATGGGAAATCTTGAA 59.662 41.667 0.00 0.00 0.00 2.69
1137 1211 3.882888 GCGGTAATCATGGGAAATCTTGA 59.117 43.478 0.00 0.00 0.00 3.02
1138 1212 3.631686 TGCGGTAATCATGGGAAATCTTG 59.368 43.478 0.00 0.00 0.00 3.02
1139 1213 3.897239 TGCGGTAATCATGGGAAATCTT 58.103 40.909 0.00 0.00 0.00 2.40
1140 1214 3.576078 TGCGGTAATCATGGGAAATCT 57.424 42.857 0.00 0.00 0.00 2.40
1141 1215 6.515272 AATATGCGGTAATCATGGGAAATC 57.485 37.500 0.00 0.00 0.00 2.17
1142 1216 6.071391 GGAAATATGCGGTAATCATGGGAAAT 60.071 38.462 0.00 0.00 0.00 2.17
1143 1217 5.242838 GGAAATATGCGGTAATCATGGGAAA 59.757 40.000 0.00 0.00 0.00 3.13
1144 1218 4.764823 GGAAATATGCGGTAATCATGGGAA 59.235 41.667 0.00 0.00 0.00 3.97
1145 1219 4.331968 GGAAATATGCGGTAATCATGGGA 58.668 43.478 0.00 0.00 0.00 4.37
1146 1220 3.126858 CGGAAATATGCGGTAATCATGGG 59.873 47.826 0.00 0.00 36.66 4.00
1147 1221 3.751175 ACGGAAATATGCGGTAATCATGG 59.249 43.478 0.00 0.00 45.62 3.66
1148 1222 4.711721 CACGGAAATATGCGGTAATCATG 58.288 43.478 0.00 0.00 45.62 3.07
1149 1223 3.188460 GCACGGAAATATGCGGTAATCAT 59.812 43.478 0.00 0.00 45.62 2.45
1150 1224 2.546368 GCACGGAAATATGCGGTAATCA 59.454 45.455 0.00 0.00 45.62 2.57
1151 1225 2.095919 GGCACGGAAATATGCGGTAATC 60.096 50.000 0.00 0.00 45.62 1.75
1152 1226 1.877443 GGCACGGAAATATGCGGTAAT 59.123 47.619 0.00 0.00 45.62 1.89
1153 1227 1.301423 GGCACGGAAATATGCGGTAA 58.699 50.000 0.00 0.00 45.62 2.85
1154 1228 0.533308 GGGCACGGAAATATGCGGTA 60.533 55.000 0.00 0.00 45.62 4.02
1155 1229 1.822186 GGGCACGGAAATATGCGGT 60.822 57.895 0.00 0.00 45.62 5.68
1156 1230 2.551912 GGGGCACGGAAATATGCGG 61.552 63.158 0.00 0.00 45.62 5.69
1157 1231 1.507141 GAGGGGCACGGAAATATGCG 61.507 60.000 0.00 0.00 46.87 4.73
1158 1232 1.507141 CGAGGGGCACGGAAATATGC 61.507 60.000 0.00 0.00 41.29 3.14
1159 1233 2.616969 CGAGGGGCACGGAAATATG 58.383 57.895 0.00 0.00 0.00 1.78
1167 1241 1.087771 GTGATTTACCGAGGGGCACG 61.088 60.000 0.00 0.00 36.48 5.34
1168 1242 0.746923 GGTGATTTACCGAGGGGCAC 60.747 60.000 0.00 0.00 40.26 5.01
1169 1243 1.605453 GGTGATTTACCGAGGGGCA 59.395 57.895 0.00 0.00 40.26 5.36
1170 1244 4.553668 GGTGATTTACCGAGGGGC 57.446 61.111 0.00 0.00 40.26 5.80
1178 1252 6.509418 TCTTTGCTTGGTATGGTGATTTAC 57.491 37.500 0.00 0.00 0.00 2.01
1179 1253 7.716799 ATTCTTTGCTTGGTATGGTGATTTA 57.283 32.000 0.00 0.00 0.00 1.40
1180 1254 6.610075 ATTCTTTGCTTGGTATGGTGATTT 57.390 33.333 0.00 0.00 0.00 2.17
1181 1255 6.096846 GGTATTCTTTGCTTGGTATGGTGATT 59.903 38.462 0.00 0.00 0.00 2.57
1182 1256 5.594317 GGTATTCTTTGCTTGGTATGGTGAT 59.406 40.000 0.00 0.00 0.00 3.06
1183 1257 4.947388 GGTATTCTTTGCTTGGTATGGTGA 59.053 41.667 0.00 0.00 0.00 4.02
1184 1258 4.704540 TGGTATTCTTTGCTTGGTATGGTG 59.295 41.667 0.00 0.00 0.00 4.17
1185 1259 4.929479 TGGTATTCTTTGCTTGGTATGGT 58.071 39.130 0.00 0.00 0.00 3.55
1186 1260 6.469782 AATGGTATTCTTTGCTTGGTATGG 57.530 37.500 0.00 0.00 0.00 2.74
1187 1261 8.776376 AAAAATGGTATTCTTTGCTTGGTATG 57.224 30.769 0.00 0.00 0.00 2.39
1249 1323 9.424319 CGTGGCAATAATTAGATTCTACATACT 57.576 33.333 0.00 0.00 0.00 2.12
1250 1324 9.419297 TCGTGGCAATAATTAGATTCTACATAC 57.581 33.333 0.00 0.00 0.00 2.39
1251 1325 9.639601 CTCGTGGCAATAATTAGATTCTACATA 57.360 33.333 0.00 0.00 0.00 2.29
1252 1326 8.367911 TCTCGTGGCAATAATTAGATTCTACAT 58.632 33.333 0.00 0.00 0.00 2.29
1253 1327 7.722363 TCTCGTGGCAATAATTAGATTCTACA 58.278 34.615 0.00 0.00 0.00 2.74
1254 1328 7.868415 ACTCTCGTGGCAATAATTAGATTCTAC 59.132 37.037 0.00 0.00 0.00 2.59
1255 1329 7.952671 ACTCTCGTGGCAATAATTAGATTCTA 58.047 34.615 0.00 0.00 0.00 2.10
1256 1330 6.821388 ACTCTCGTGGCAATAATTAGATTCT 58.179 36.000 0.00 0.00 0.00 2.40
1257 1331 7.348201 CAACTCTCGTGGCAATAATTAGATTC 58.652 38.462 0.00 0.00 0.00 2.52
1258 1332 6.260936 CCAACTCTCGTGGCAATAATTAGATT 59.739 38.462 0.00 0.00 0.00 2.40
1259 1333 5.760253 CCAACTCTCGTGGCAATAATTAGAT 59.240 40.000 0.00 0.00 0.00 1.98
1260 1334 5.116180 CCAACTCTCGTGGCAATAATTAGA 58.884 41.667 0.00 0.00 0.00 2.10
1261 1335 4.876107 ACCAACTCTCGTGGCAATAATTAG 59.124 41.667 0.00 0.00 0.00 1.73
1262 1336 4.839121 ACCAACTCTCGTGGCAATAATTA 58.161 39.130 0.00 0.00 0.00 1.40
1263 1337 3.686016 ACCAACTCTCGTGGCAATAATT 58.314 40.909 0.00 0.00 0.00 1.40
1264 1338 3.350219 ACCAACTCTCGTGGCAATAAT 57.650 42.857 0.00 0.00 0.00 1.28
1265 1339 2.851263 ACCAACTCTCGTGGCAATAA 57.149 45.000 0.00 0.00 0.00 1.40
1266 1340 2.301870 AGAACCAACTCTCGTGGCAATA 59.698 45.455 0.00 0.00 0.00 1.90
1267 1341 1.072331 AGAACCAACTCTCGTGGCAAT 59.928 47.619 0.00 0.00 0.00 3.56
1268 1342 0.468226 AGAACCAACTCTCGTGGCAA 59.532 50.000 0.00 0.00 0.00 4.52
1269 1343 0.249868 CAGAACCAACTCTCGTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
1270 1344 0.033504 TCAGAACCAACTCTCGTGGC 59.966 55.000 0.00 0.00 0.00 5.01
1271 1345 1.784525 GTCAGAACCAACTCTCGTGG 58.215 55.000 0.00 0.00 0.00 4.94
1272 1346 1.269102 ACGTCAGAACCAACTCTCGTG 60.269 52.381 0.00 0.00 0.00 4.35
1273 1347 1.030457 ACGTCAGAACCAACTCTCGT 58.970 50.000 0.00 0.00 0.00 4.18
1274 1348 1.269102 ACACGTCAGAACCAACTCTCG 60.269 52.381 0.00 0.00 0.00 4.04
1275 1349 2.510768 ACACGTCAGAACCAACTCTC 57.489 50.000 0.00 0.00 0.00 3.20
1276 1350 2.550978 CAACACGTCAGAACCAACTCT 58.449 47.619 0.00 0.00 0.00 3.24
1277 1351 1.597663 CCAACACGTCAGAACCAACTC 59.402 52.381 0.00 0.00 0.00 3.01
1278 1352 1.065709 ACCAACACGTCAGAACCAACT 60.066 47.619 0.00 0.00 0.00 3.16
1279 1353 1.375551 ACCAACACGTCAGAACCAAC 58.624 50.000 0.00 0.00 0.00 3.77
1280 1354 2.828877 CTACCAACACGTCAGAACCAA 58.171 47.619 0.00 0.00 0.00 3.67
1281 1355 1.539496 GCTACCAACACGTCAGAACCA 60.539 52.381 0.00 0.00 0.00 3.67
1282 1356 1.145803 GCTACCAACACGTCAGAACC 58.854 55.000 0.00 0.00 0.00 3.62
1283 1357 1.860676 TGCTACCAACACGTCAGAAC 58.139 50.000 0.00 0.00 0.00 3.01
1284 1358 2.605837 TTGCTACCAACACGTCAGAA 57.394 45.000 0.00 0.00 0.00 3.02
1290 1364 6.596015 AGGAACTAGGTTGCTACCAACACG 62.596 50.000 19.71 5.18 45.66 4.49
1291 1365 3.244457 AGGAACTAGGTTGCTACCAACAC 60.244 47.826 19.71 6.56 45.66 3.32
1292 1366 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
1293 1367 3.007614 TCAGGAACTAGGTTGCTACCAAC 59.992 47.826 19.71 5.58 42.02 3.77
1294 1368 3.244582 TCAGGAACTAGGTTGCTACCAA 58.755 45.455 19.71 0.00 42.02 3.67
1295 1369 2.897350 TCAGGAACTAGGTTGCTACCA 58.103 47.619 19.71 4.87 42.02 3.25
1296 1370 4.489306 AATCAGGAACTAGGTTGCTACC 57.511 45.455 9.54 9.54 42.02 3.18
1297 1371 5.488341 TCAAATCAGGAACTAGGTTGCTAC 58.512 41.667 4.28 0.00 42.02 3.58
1298 1372 5.483937 TCTCAAATCAGGAACTAGGTTGCTA 59.516 40.000 4.28 0.00 42.02 3.49
1299 1373 4.287067 TCTCAAATCAGGAACTAGGTTGCT 59.713 41.667 0.00 0.00 44.62 3.91
1300 1374 4.579869 TCTCAAATCAGGAACTAGGTTGC 58.420 43.478 0.00 0.00 36.02 4.17
1301 1375 5.181748 CCTCTCAAATCAGGAACTAGGTTG 58.818 45.833 0.00 0.00 36.02 3.77
1302 1376 4.846940 ACCTCTCAAATCAGGAACTAGGTT 59.153 41.667 0.00 0.00 36.02 3.50
1303 1377 4.430441 ACCTCTCAAATCAGGAACTAGGT 58.570 43.478 0.00 0.00 36.02 3.08
1304 1378 4.714308 AGACCTCTCAAATCAGGAACTAGG 59.286 45.833 0.00 0.00 36.02 3.02
1305 1379 5.656416 AGAGACCTCTCAAATCAGGAACTAG 59.344 44.000 5.13 0.00 45.21 2.57
1306 1380 5.420421 CAGAGACCTCTCAAATCAGGAACTA 59.580 44.000 5.13 0.00 45.21 2.24
1307 1381 4.222588 CAGAGACCTCTCAAATCAGGAACT 59.777 45.833 5.13 0.00 45.21 3.01
1308 1382 4.502962 CAGAGACCTCTCAAATCAGGAAC 58.497 47.826 5.13 0.00 45.21 3.62
1309 1383 3.055530 GCAGAGACCTCTCAAATCAGGAA 60.056 47.826 5.13 0.00 45.21 3.36
1310 1384 2.499289 GCAGAGACCTCTCAAATCAGGA 59.501 50.000 5.13 0.00 45.21 3.86
1311 1385 2.500910 AGCAGAGACCTCTCAAATCAGG 59.499 50.000 5.13 0.00 45.21 3.86
1312 1386 3.891422 AGCAGAGACCTCTCAAATCAG 57.109 47.619 5.13 0.00 45.21 2.90
1313 1387 3.367806 CGAAGCAGAGACCTCTCAAATCA 60.368 47.826 5.13 0.00 45.21 2.57
1314 1388 3.119316 TCGAAGCAGAGACCTCTCAAATC 60.119 47.826 5.13 0.00 45.21 2.17
1315 1389 2.828520 TCGAAGCAGAGACCTCTCAAAT 59.171 45.455 5.13 0.00 45.21 2.32
1316 1390 2.239400 TCGAAGCAGAGACCTCTCAAA 58.761 47.619 5.13 0.00 45.21 2.69
1317 1391 1.911057 TCGAAGCAGAGACCTCTCAA 58.089 50.000 5.13 0.00 45.21 3.02
1318 1392 1.911057 TTCGAAGCAGAGACCTCTCA 58.089 50.000 5.13 0.00 45.21 3.27
1319 1393 2.165437 ACATTCGAAGCAGAGACCTCTC 59.835 50.000 3.35 0.00 43.17 3.20
1320 1394 2.175202 ACATTCGAAGCAGAGACCTCT 58.825 47.619 3.35 0.00 41.37 3.69
1321 1395 2.663826 ACATTCGAAGCAGAGACCTC 57.336 50.000 3.35 0.00 0.00 3.85
1322 1396 2.966050 GAACATTCGAAGCAGAGACCT 58.034 47.619 3.35 0.00 0.00 3.85
1336 1410 7.144661 TGCAAATAAGTGAATGAACGAACATT 58.855 30.769 10.38 10.38 42.19 2.71
1337 1411 6.676950 TGCAAATAAGTGAATGAACGAACAT 58.323 32.000 0.00 0.00 0.00 2.71
1338 1412 6.066054 TGCAAATAAGTGAATGAACGAACA 57.934 33.333 0.00 0.00 0.00 3.18
1339 1413 7.325821 TGAATGCAAATAAGTGAATGAACGAAC 59.674 33.333 0.00 0.00 0.00 3.95
1340 1414 7.366513 TGAATGCAAATAAGTGAATGAACGAA 58.633 30.769 0.00 0.00 0.00 3.85
1341 1415 6.907741 TGAATGCAAATAAGTGAATGAACGA 58.092 32.000 0.00 0.00 0.00 3.85
1342 1416 7.565450 TTGAATGCAAATAAGTGAATGAACG 57.435 32.000 0.00 0.00 0.00 3.95
1346 1420 9.763465 GGAATTTTGAATGCAAATAAGTGAATG 57.237 29.630 0.00 0.00 43.07 2.67
1347 1421 9.504708 TGGAATTTTGAATGCAAATAAGTGAAT 57.495 25.926 0.00 0.00 43.07 2.57
1348 1422 8.772705 GTGGAATTTTGAATGCAAATAAGTGAA 58.227 29.630 0.00 0.00 43.07 3.18
1349 1423 8.149647 AGTGGAATTTTGAATGCAAATAAGTGA 58.850 29.630 0.00 0.00 43.07 3.41
1350 1424 8.314143 AGTGGAATTTTGAATGCAAATAAGTG 57.686 30.769 0.00 0.00 43.07 3.16
1379 1453 9.716507 CATACCGAGAATATTTCGAACAAATTT 57.283 29.630 16.51 0.00 40.36 1.82
1380 1454 8.889717 ACATACCGAGAATATTTCGAACAAATT 58.110 29.630 16.51 0.00 40.36 1.82
1381 1455 8.433421 ACATACCGAGAATATTTCGAACAAAT 57.567 30.769 16.51 0.00 40.36 2.32
1382 1456 7.762615 AGACATACCGAGAATATTTCGAACAAA 59.237 33.333 16.51 0.00 40.36 2.83
1383 1457 7.262772 AGACATACCGAGAATATTTCGAACAA 58.737 34.615 16.51 0.00 40.36 2.83
1384 1458 6.802608 AGACATACCGAGAATATTTCGAACA 58.197 36.000 16.51 0.00 40.36 3.18
1385 1459 6.086502 CGAGACATACCGAGAATATTTCGAAC 59.913 42.308 16.51 0.00 40.36 3.95
1386 1460 6.140786 CGAGACATACCGAGAATATTTCGAA 58.859 40.000 16.51 0.00 40.36 3.71
1387 1461 5.334646 CCGAGACATACCGAGAATATTTCGA 60.335 44.000 16.51 0.00 40.36 3.71
1388 1462 4.852104 CCGAGACATACCGAGAATATTTCG 59.148 45.833 10.96 10.96 37.78 3.46
1389 1463 5.770417 ACCGAGACATACCGAGAATATTTC 58.230 41.667 0.00 0.00 0.00 2.17
1390 1464 5.786264 ACCGAGACATACCGAGAATATTT 57.214 39.130 0.00 0.00 0.00 1.40
1391 1465 6.294397 GGTTACCGAGACATACCGAGAATATT 60.294 42.308 0.00 0.00 0.00 1.28
1392 1466 5.182760 GGTTACCGAGACATACCGAGAATAT 59.817 44.000 0.00 0.00 0.00 1.28
1393 1467 4.516698 GGTTACCGAGACATACCGAGAATA 59.483 45.833 0.00 0.00 0.00 1.75
1394 1468 3.317430 GGTTACCGAGACATACCGAGAAT 59.683 47.826 0.00 0.00 0.00 2.40
1395 1469 2.684881 GGTTACCGAGACATACCGAGAA 59.315 50.000 0.00 0.00 0.00 2.87
1396 1470 2.292267 GGTTACCGAGACATACCGAGA 58.708 52.381 0.00 0.00 0.00 4.04
1397 1471 2.770699 GGTTACCGAGACATACCGAG 57.229 55.000 0.00 0.00 0.00 4.63
1417 1491 3.248363 GGACTGGTAAACGTGGTTAACAC 59.752 47.826 8.10 3.28 46.78 3.32
1418 1492 3.465871 GGACTGGTAAACGTGGTTAACA 58.534 45.455 8.10 0.00 0.00 2.41
1419 1493 2.807967 GGGACTGGTAAACGTGGTTAAC 59.192 50.000 0.00 0.00 0.00 2.01
1420 1494 2.224499 GGGGACTGGTAAACGTGGTTAA 60.224 50.000 0.00 0.00 0.00 2.01
1421 1495 1.347378 GGGGACTGGTAAACGTGGTTA 59.653 52.381 0.00 0.00 0.00 2.85
1422 1496 0.109153 GGGGACTGGTAAACGTGGTT 59.891 55.000 0.00 0.00 0.00 3.67
1423 1497 0.765519 AGGGGACTGGTAAACGTGGT 60.766 55.000 0.00 0.00 41.13 4.16
1424 1498 0.399075 AAGGGGACTGGTAAACGTGG 59.601 55.000 0.00 0.00 42.68 4.94
1425 1499 1.804601 GAAGGGGACTGGTAAACGTG 58.195 55.000 0.00 0.00 42.68 4.49
1426 1500 0.319405 CGAAGGGGACTGGTAAACGT 59.681 55.000 0.00 0.00 42.68 3.99
1427 1501 3.132863 CGAAGGGGACTGGTAAACG 57.867 57.895 0.00 0.00 42.68 3.60
1441 1515 4.342772 CGAATGAGGCAATTTTACCGAAG 58.657 43.478 0.00 0.00 0.00 3.79
1442 1516 3.127895 CCGAATGAGGCAATTTTACCGAA 59.872 43.478 0.00 0.00 0.00 4.30
1443 1517 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
1444 1518 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
1445 1519 4.497507 GCTACCGAATGAGGCAATTTTACC 60.498 45.833 0.00 0.00 33.69 2.85
1446 1520 4.497507 GGCTACCGAATGAGGCAATTTTAC 60.498 45.833 0.00 0.00 38.12 2.01
1447 1521 3.630312 GGCTACCGAATGAGGCAATTTTA 59.370 43.478 0.00 0.00 38.12 1.52
1448 1522 2.427095 GGCTACCGAATGAGGCAATTTT 59.573 45.455 0.00 0.00 38.12 1.82
1449 1523 2.024414 GGCTACCGAATGAGGCAATTT 58.976 47.619 0.00 0.00 38.12 1.82
1450 1524 1.064758 TGGCTACCGAATGAGGCAATT 60.065 47.619 0.00 0.00 44.43 2.32
1451 1525 0.546122 TGGCTACCGAATGAGGCAAT 59.454 50.000 0.00 0.00 44.43 3.56
1452 1526 1.987213 TGGCTACCGAATGAGGCAA 59.013 52.632 0.00 0.00 44.43 4.52
1453 1527 0.326595 TTTGGCTACCGAATGAGGCA 59.673 50.000 0.00 0.00 45.57 4.75
1454 1528 1.459450 TTTTGGCTACCGAATGAGGC 58.541 50.000 0.00 0.00 38.67 4.70
1455 1529 3.545703 AGATTTTGGCTACCGAATGAGG 58.454 45.455 0.00 0.00 37.30 3.86
1456 1530 4.396166 ACAAGATTTTGGCTACCGAATGAG 59.604 41.667 0.57 0.00 38.66 2.90
1457 1531 4.331968 ACAAGATTTTGGCTACCGAATGA 58.668 39.130 0.57 0.00 38.66 2.57
1458 1532 4.438744 GGACAAGATTTTGGCTACCGAATG 60.439 45.833 1.29 0.00 42.28 2.67
1459 1533 3.694566 GGACAAGATTTTGGCTACCGAAT 59.305 43.478 1.29 0.00 42.28 3.34
1460 1534 3.078837 GGACAAGATTTTGGCTACCGAA 58.921 45.455 1.29 0.00 42.28 4.30
1461 1535 2.706890 GGACAAGATTTTGGCTACCGA 58.293 47.619 1.29 0.00 42.28 4.69
1462 1536 1.396996 CGGACAAGATTTTGGCTACCG 59.603 52.381 1.29 6.75 42.28 4.02
1463 1537 1.743394 CCGGACAAGATTTTGGCTACC 59.257 52.381 0.00 0.00 42.28 3.18
1464 1538 2.433436 ACCGGACAAGATTTTGGCTAC 58.567 47.619 9.46 0.00 42.28 3.58
1465 1539 2.871096 ACCGGACAAGATTTTGGCTA 57.129 45.000 9.46 0.00 42.28 3.93
1466 1540 2.224670 TGTACCGGACAAGATTTTGGCT 60.225 45.455 9.46 0.00 42.28 4.75
1467 1541 2.095415 GTGTACCGGACAAGATTTTGGC 60.095 50.000 9.46 0.00 40.66 4.52
1468 1542 3.142951 TGTGTACCGGACAAGATTTTGG 58.857 45.455 9.46 0.00 40.66 3.28
1469 1543 4.142687 GGATGTGTACCGGACAAGATTTTG 60.143 45.833 9.46 0.00 40.66 2.44
1470 1544 4.007659 GGATGTGTACCGGACAAGATTTT 58.992 43.478 9.46 0.00 40.66 1.82
1471 1545 3.606687 GGATGTGTACCGGACAAGATTT 58.393 45.455 9.46 0.00 40.66 2.17
1472 1546 2.093128 GGGATGTGTACCGGACAAGATT 60.093 50.000 9.46 0.00 40.66 2.40
1473 1547 1.485066 GGGATGTGTACCGGACAAGAT 59.515 52.381 9.46 4.12 40.66 2.40
1474 1548 0.899720 GGGATGTGTACCGGACAAGA 59.100 55.000 9.46 0.00 40.66 3.02
1475 1549 0.611200 TGGGATGTGTACCGGACAAG 59.389 55.000 9.46 0.00 40.66 3.16
1476 1550 0.322322 GTGGGATGTGTACCGGACAA 59.678 55.000 9.46 0.30 40.66 3.18
1477 1551 0.832559 TGTGGGATGTGTACCGGACA 60.833 55.000 9.46 1.55 34.94 4.02
1478 1552 0.390735 GTGTGGGATGTGTACCGGAC 60.391 60.000 9.46 2.18 0.00 4.79
1479 1553 1.546589 GGTGTGGGATGTGTACCGGA 61.547 60.000 9.46 0.00 0.00 5.14
1480 1554 1.078708 GGTGTGGGATGTGTACCGG 60.079 63.158 0.00 0.00 0.00 5.28
1481 1555 1.447140 CGGTGTGGGATGTGTACCG 60.447 63.158 0.00 0.00 46.66 4.02
1482 1556 0.322322 TTCGGTGTGGGATGTGTACC 59.678 55.000 0.00 0.00 0.00 3.34
1483 1557 2.006888 CATTCGGTGTGGGATGTGTAC 58.993 52.381 0.00 0.00 0.00 2.90
1484 1558 1.065782 CCATTCGGTGTGGGATGTGTA 60.066 52.381 0.00 0.00 32.98 2.90
1485 1559 0.322456 CCATTCGGTGTGGGATGTGT 60.322 55.000 0.00 0.00 32.98 3.72
1486 1560 2.481212 CCATTCGGTGTGGGATGTG 58.519 57.895 0.00 0.00 32.98 3.21
1529 1603 7.949434 ACTCCCGTTTAATTCTCGTTATCTAT 58.051 34.615 0.00 0.00 0.00 1.98
1534 1608 6.222389 TCAAACTCCCGTTTAATTCTCGTTA 58.778 36.000 0.00 0.00 41.23 3.18
1567 1641 6.381133 AGGCAAATACAGAAAAATTAGGAGGG 59.619 38.462 0.00 0.00 0.00 4.30
1586 1664 7.740805 ACCAAATAGGAAATTAACAAGGCAAA 58.259 30.769 0.00 0.00 41.22 3.68
1603 3116 4.321974 GGGCCTGTTCTTCAAACCAAATAG 60.322 45.833 0.84 0.00 0.00 1.73
1617 3130 1.821136 CTCCTTTGATTGGGCCTGTTC 59.179 52.381 4.53 0.00 0.00 3.18
1643 3156 2.762327 GACCATCACCTGCATCCAAATT 59.238 45.455 0.00 0.00 0.00 1.82
1659 3172 2.202932 GCGCCATGAGACGACCAT 60.203 61.111 0.00 0.00 0.00 3.55
1664 3177 4.147449 TGGAGGCGCCATGAGACG 62.147 66.667 31.54 0.00 43.33 4.18
1798 3311 1.152118 TACACAGCCTGGTGGAGGT 60.152 57.895 0.00 0.00 44.97 3.85
1874 3388 3.055385 TGGCCGCCCTTATATGATTCTAC 60.055 47.826 7.03 0.00 0.00 2.59
1876 3390 1.985159 TGGCCGCCCTTATATGATTCT 59.015 47.619 7.03 0.00 0.00 2.40
1915 3429 3.197766 TGAGACAATAGCAAGGACCGAAT 59.802 43.478 0.00 0.00 0.00 3.34
2024 3541 8.173542 TCGAGGAATACTATAAGCAACACATA 57.826 34.615 0.00 0.00 0.00 2.29
2100 3621 7.556275 TCCCTACTTTGATAATACAAAAGCCAG 59.444 37.037 0.00 0.00 38.90 4.85
2101 3622 7.406916 TCCCTACTTTGATAATACAAAAGCCA 58.593 34.615 0.00 0.00 38.90 4.75
2119 3640 7.104974 TCCTATCTAAATACTGCTCCCTACT 57.895 40.000 0.00 0.00 0.00 2.57
2137 3658 3.158676 AGTCGTATCAAGGGCTCCTATC 58.841 50.000 0.00 0.00 31.13 2.08
2142 3663 3.383825 TCCTTAAGTCGTATCAAGGGCTC 59.616 47.826 0.97 0.00 38.47 4.70
2144 3665 3.383825 TCTCCTTAAGTCGTATCAAGGGC 59.616 47.826 0.97 0.00 38.47 5.19
2147 3668 7.090953 ACTTCTCTCCTTAAGTCGTATCAAG 57.909 40.000 0.97 0.00 30.08 3.02
2148 3669 7.463961 AACTTCTCTCCTTAAGTCGTATCAA 57.536 36.000 0.97 0.00 34.91 2.57
2150 3671 8.436046 TCTAACTTCTCTCCTTAAGTCGTATC 57.564 38.462 0.97 0.00 34.91 2.24
2153 3674 5.648960 CCTCTAACTTCTCTCCTTAAGTCGT 59.351 44.000 0.97 0.00 34.91 4.34
2156 3677 9.416284 CTATTCCTCTAACTTCTCTCCTTAAGT 57.584 37.037 0.97 0.00 37.54 2.24
2193 3714 5.740406 TGTACCGAAGACGAAATGTTTTTC 58.260 37.500 0.00 0.00 42.66 2.29
2198 3719 3.062042 GGTTGTACCGAAGACGAAATGT 58.938 45.455 0.00 0.00 42.66 2.71
2201 3722 1.270252 GGGGTTGTACCGAAGACGAAA 60.270 52.381 0.00 0.00 39.83 3.46
2309 3842 1.315257 ATAGCAACCCGTACGACCGT 61.315 55.000 18.76 6.82 0.00 4.83
2311 3844 1.000938 CCTATAGCAACCCGTACGACC 60.001 57.143 18.76 0.00 0.00 4.79
2313 3846 0.670162 GCCTATAGCAACCCGTACGA 59.330 55.000 18.76 0.00 42.97 3.43
2321 3854 0.386838 ACGTACGGGCCTATAGCAAC 59.613 55.000 21.06 0.00 46.50 4.17
2323 3856 2.035421 CACGTACGGGCCTATAGCA 58.965 57.895 21.06 0.00 46.50 3.49
2352 3897 3.068691 CCCCTCCTTCTCACGCGA 61.069 66.667 15.93 0.00 0.00 5.87
2392 3937 1.153229 GGTGGGAGGCGATGGTTAC 60.153 63.158 0.00 0.00 0.00 2.50
2497 4068 1.018752 CGGTGACATGTGAATCGGCA 61.019 55.000 1.15 0.00 0.00 5.69
2511 4082 2.646175 GCAGGTGGTCTAGCGGTGA 61.646 63.158 0.00 0.00 0.00 4.02
2519 4090 0.902984 TCGGTATGTGCAGGTGGTCT 60.903 55.000 0.00 0.00 0.00 3.85
2524 4095 2.577059 CGGTCGGTATGTGCAGGT 59.423 61.111 0.00 0.00 0.00 4.00
2530 4101 4.203076 GGCGAGCGGTCGGTATGT 62.203 66.667 34.69 0.00 46.91 2.29
2580 4152 3.597728 GGTAGGCGAGAGAGCGGG 61.598 72.222 0.00 0.00 38.18 6.13
2639 4213 2.224209 ACGCCCAGGACGGATTTTATAG 60.224 50.000 0.00 0.00 36.56 1.31
2661 4235 4.996434 GGGATGAGGCGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
2681 4258 3.855853 GAAGGCGAGGAGGGAGGC 61.856 72.222 0.00 0.00 0.00 4.70
2688 4265 2.697761 CGTCGAAGGAAGGCGAGGA 61.698 63.158 0.00 0.00 42.87 3.71
2774 4372 1.528309 GAGCTCCTCCTCCTCCTCG 60.528 68.421 0.87 0.00 0.00 4.63
2782 4380 1.566298 AAAATGGGCGAGCTCCTCCT 61.566 55.000 17.59 4.57 0.00 3.69
2798 4396 4.062656 GCGGCGGGGATGCAAAAA 62.063 61.111 9.78 0.00 36.28 1.94
2849 4447 3.807538 GGCACTCCGTCGACGCTA 61.808 66.667 31.73 20.10 38.18 4.26
2921 4519 2.856346 CGACAAACGCGCCCGATAG 61.856 63.158 5.73 0.00 38.29 2.08
2933 4531 1.646540 CAACTGCTTCGGCGACAAA 59.353 52.632 10.16 0.00 45.37 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.