Multiple sequence alignment - TraesCS7D01G529000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G529000 chr7D 100.000 2552 0 0 1 2552 623570219 623572770 0.000000e+00 4713
1 TraesCS7D01G529000 chr1D 94.371 1972 84 13 597 2552 347252968 347251008 0.000000e+00 3001
2 TraesCS7D01G529000 chr2B 92.637 1983 106 15 601 2552 19091947 19093920 0.000000e+00 2817
3 TraesCS7D01G529000 chr2B 92.331 1643 99 13 922 2552 39826200 39827827 0.000000e+00 2311
4 TraesCS7D01G529000 chr1A 93.348 1879 110 9 601 2470 556201763 556203635 0.000000e+00 2763
5 TraesCS7D01G529000 chr5D 94.005 1835 87 17 601 2427 44511943 44513762 0.000000e+00 2758
6 TraesCS7D01G529000 chr3A 93.120 1875 113 12 601 2470 235187479 235189342 0.000000e+00 2734
7 TraesCS7D01G529000 chr3D 93.652 1843 92 13 598 2427 546485992 546487822 0.000000e+00 2732
8 TraesCS7D01G529000 chr3D 93.939 1023 43 7 1542 2552 4247200 4248215 0.000000e+00 1528
9 TraesCS7D01G529000 chrUn 94.252 1792 82 16 644 2427 43407879 43409657 0.000000e+00 2719
10 TraesCS7D01G529000 chr2D 93.699 1825 96 13 605 2427 84780831 84782638 0.000000e+00 2715
11 TraesCS7D01G529000 chr4D 93.344 1833 104 15 601 2427 78732769 78730949 0.000000e+00 2693
12 TraesCS7D01G529000 chr3B 93.064 1831 111 13 601 2427 370213881 370215699 0.000000e+00 2663
13 TraesCS7D01G529000 chr3B 92.496 1839 122 14 597 2430 763485558 763483731 0.000000e+00 2617
14 TraesCS7D01G529000 chr7A 95.851 241 8 1 2312 2552 152036405 152036643 3.080000e-104 388
15 TraesCS7D01G529000 chr7A 91.089 101 5 2 2456 2552 84723166 84723066 1.590000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G529000 chr7D 623570219 623572770 2551 False 4713 4713 100.000 1 2552 1 chr7D.!!$F1 2551
1 TraesCS7D01G529000 chr1D 347251008 347252968 1960 True 3001 3001 94.371 597 2552 1 chr1D.!!$R1 1955
2 TraesCS7D01G529000 chr2B 19091947 19093920 1973 False 2817 2817 92.637 601 2552 1 chr2B.!!$F1 1951
3 TraesCS7D01G529000 chr2B 39826200 39827827 1627 False 2311 2311 92.331 922 2552 1 chr2B.!!$F2 1630
4 TraesCS7D01G529000 chr1A 556201763 556203635 1872 False 2763 2763 93.348 601 2470 1 chr1A.!!$F1 1869
5 TraesCS7D01G529000 chr5D 44511943 44513762 1819 False 2758 2758 94.005 601 2427 1 chr5D.!!$F1 1826
6 TraesCS7D01G529000 chr3A 235187479 235189342 1863 False 2734 2734 93.120 601 2470 1 chr3A.!!$F1 1869
7 TraesCS7D01G529000 chr3D 546485992 546487822 1830 False 2732 2732 93.652 598 2427 1 chr3D.!!$F2 1829
8 TraesCS7D01G529000 chr3D 4247200 4248215 1015 False 1528 1528 93.939 1542 2552 1 chr3D.!!$F1 1010
9 TraesCS7D01G529000 chrUn 43407879 43409657 1778 False 2719 2719 94.252 644 2427 1 chrUn.!!$F1 1783
10 TraesCS7D01G529000 chr2D 84780831 84782638 1807 False 2715 2715 93.699 605 2427 1 chr2D.!!$F1 1822
11 TraesCS7D01G529000 chr4D 78730949 78732769 1820 True 2693 2693 93.344 601 2427 1 chr4D.!!$R1 1826
12 TraesCS7D01G529000 chr3B 370213881 370215699 1818 False 2663 2663 93.064 601 2427 1 chr3B.!!$F1 1826
13 TraesCS7D01G529000 chr3B 763483731 763485558 1827 True 2617 2617 92.496 597 2430 1 chr3B.!!$R1 1833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.030638 AAAATGTGCTTGCGACGCTT 59.969 45.0 22.08 1.52 0.00 4.68 F
337 338 0.107654 AGGTTATTGCTGACCCGCTC 60.108 55.0 0.00 0.00 36.57 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1159 1189 0.179029 ATTGCCCCGATTCTTACCCG 60.179 55.0 0.0 0.0 0.00 5.28 R
1755 1795 0.474854 TTGGCCCACAGAGGAACCTA 60.475 55.0 0.0 0.0 41.22 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.929180 GTAATAAATAGTCAGATACTGCCATCA 57.071 33.333 0.00 0.00 39.39 3.07
30 31 9.664332 AATAAATAGTCAGATACTGCCATCATC 57.336 33.333 0.00 0.00 39.39 2.92
31 32 6.676990 AATAGTCAGATACTGCCATCATCA 57.323 37.500 0.00 0.00 39.39 3.07
32 33 6.870895 ATAGTCAGATACTGCCATCATCAT 57.129 37.500 0.00 0.00 39.39 2.45
33 34 5.563876 AGTCAGATACTGCCATCATCATT 57.436 39.130 0.00 0.00 36.93 2.57
34 35 5.938279 AGTCAGATACTGCCATCATCATTT 58.062 37.500 0.00 0.00 36.93 2.32
35 36 5.763698 AGTCAGATACTGCCATCATCATTTG 59.236 40.000 0.00 0.00 36.93 2.32
36 37 5.530171 GTCAGATACTGCCATCATCATTTGT 59.470 40.000 0.00 0.00 0.00 2.83
37 38 6.039047 GTCAGATACTGCCATCATCATTTGTT 59.961 38.462 0.00 0.00 0.00 2.83
38 39 6.038936 TCAGATACTGCCATCATCATTTGTTG 59.961 38.462 0.00 0.00 0.00 3.33
39 40 5.889853 AGATACTGCCATCATCATTTGTTGT 59.110 36.000 0.00 0.00 0.00 3.32
40 41 4.877378 ACTGCCATCATCATTTGTTGTT 57.123 36.364 0.00 0.00 0.00 2.83
41 42 5.981088 ACTGCCATCATCATTTGTTGTTA 57.019 34.783 0.00 0.00 0.00 2.41
42 43 5.957798 ACTGCCATCATCATTTGTTGTTAG 58.042 37.500 0.00 0.00 0.00 2.34
43 44 5.105635 ACTGCCATCATCATTTGTTGTTAGG 60.106 40.000 0.00 0.00 0.00 2.69
44 45 4.771577 TGCCATCATCATTTGTTGTTAGGT 59.228 37.500 0.00 0.00 0.00 3.08
45 46 5.245751 TGCCATCATCATTTGTTGTTAGGTT 59.754 36.000 0.00 0.00 0.00 3.50
46 47 6.435591 TGCCATCATCATTTGTTGTTAGGTTA 59.564 34.615 0.00 0.00 0.00 2.85
47 48 6.974622 GCCATCATCATTTGTTGTTAGGTTAG 59.025 38.462 0.00 0.00 0.00 2.34
48 49 6.974622 CCATCATCATTTGTTGTTAGGTTAGC 59.025 38.462 0.00 0.00 0.00 3.09
49 50 6.509418 TCATCATTTGTTGTTAGGTTAGCC 57.491 37.500 0.00 0.00 0.00 3.93
50 51 5.417580 TCATCATTTGTTGTTAGGTTAGCCC 59.582 40.000 0.00 0.00 34.57 5.19
51 52 4.730966 TCATTTGTTGTTAGGTTAGCCCA 58.269 39.130 0.00 0.00 34.66 5.36
52 53 5.141182 TCATTTGTTGTTAGGTTAGCCCAA 58.859 37.500 0.00 0.00 34.66 4.12
53 54 5.598830 TCATTTGTTGTTAGGTTAGCCCAAA 59.401 36.000 0.00 0.00 34.66 3.28
54 55 5.934402 TTTGTTGTTAGGTTAGCCCAAAA 57.066 34.783 0.00 0.00 34.66 2.44
55 56 6.487299 TTTGTTGTTAGGTTAGCCCAAAAT 57.513 33.333 0.00 0.00 34.66 1.82
56 57 5.461032 TGTTGTTAGGTTAGCCCAAAATG 57.539 39.130 0.00 0.00 34.66 2.32
57 58 4.896482 TGTTGTTAGGTTAGCCCAAAATGT 59.104 37.500 0.00 0.00 34.66 2.71
58 59 5.221342 TGTTGTTAGGTTAGCCCAAAATGTG 60.221 40.000 0.00 0.00 34.66 3.21
59 60 3.257127 TGTTAGGTTAGCCCAAAATGTGC 59.743 43.478 0.00 0.00 34.66 4.57
60 61 2.309136 AGGTTAGCCCAAAATGTGCT 57.691 45.000 0.00 0.00 39.10 4.40
61 62 2.608623 AGGTTAGCCCAAAATGTGCTT 58.391 42.857 0.00 0.00 36.57 3.91
62 63 2.299867 AGGTTAGCCCAAAATGTGCTTG 59.700 45.455 0.00 0.00 36.57 4.01
63 64 2.068519 GTTAGCCCAAAATGTGCTTGC 58.931 47.619 0.00 0.00 36.57 4.01
64 65 0.243365 TAGCCCAAAATGTGCTTGCG 59.757 50.000 0.00 0.00 36.57 4.85
65 66 1.006337 GCCCAAAATGTGCTTGCGA 60.006 52.632 0.00 0.00 0.00 5.10
66 67 1.284297 GCCCAAAATGTGCTTGCGAC 61.284 55.000 0.00 0.00 0.00 5.19
67 68 1.003262 CCCAAAATGTGCTTGCGACG 61.003 55.000 0.00 0.00 0.00 5.12
68 69 1.608093 CCAAAATGTGCTTGCGACGC 61.608 55.000 14.19 14.19 0.00 5.19
69 70 0.661187 CAAAATGTGCTTGCGACGCT 60.661 50.000 22.08 0.00 0.00 5.07
70 71 0.030638 AAAATGTGCTTGCGACGCTT 59.969 45.000 22.08 1.52 0.00 4.68
71 72 0.871722 AAATGTGCTTGCGACGCTTA 59.128 45.000 22.08 8.19 0.00 3.09
72 73 0.871722 AATGTGCTTGCGACGCTTAA 59.128 45.000 22.08 6.92 0.00 1.85
73 74 0.871722 ATGTGCTTGCGACGCTTAAA 59.128 45.000 22.08 6.14 0.00 1.52
74 75 0.658368 TGTGCTTGCGACGCTTAAAA 59.342 45.000 22.08 5.75 0.00 1.52
75 76 1.064208 TGTGCTTGCGACGCTTAAAAA 59.936 42.857 22.08 5.35 0.00 1.94
122 123 8.644374 ACCTTAATGACCATTTAACTTTAGCA 57.356 30.769 0.17 0.00 32.50 3.49
123 124 8.739972 ACCTTAATGACCATTTAACTTTAGCAG 58.260 33.333 0.17 0.00 32.50 4.24
124 125 7.702348 CCTTAATGACCATTTAACTTTAGCAGC 59.298 37.037 0.17 0.00 32.50 5.25
125 126 6.588719 AATGACCATTTAACTTTAGCAGCA 57.411 33.333 0.00 0.00 0.00 4.41
126 127 6.588719 ATGACCATTTAACTTTAGCAGCAA 57.411 33.333 0.00 0.00 0.00 3.91
127 128 6.398234 TGACCATTTAACTTTAGCAGCAAA 57.602 33.333 0.00 0.00 0.00 3.68
128 129 6.810911 TGACCATTTAACTTTAGCAGCAAAA 58.189 32.000 0.00 0.00 0.00 2.44
129 130 6.922957 TGACCATTTAACTTTAGCAGCAAAAG 59.077 34.615 0.00 0.00 39.38 2.27
130 131 7.049799 ACCATTTAACTTTAGCAGCAAAAGA 57.950 32.000 0.00 0.00 37.38 2.52
131 132 7.496747 ACCATTTAACTTTAGCAGCAAAAGAA 58.503 30.769 0.00 0.00 37.38 2.52
132 133 8.150296 ACCATTTAACTTTAGCAGCAAAAGAAT 58.850 29.630 0.00 0.00 37.38 2.40
133 134 8.437742 CCATTTAACTTTAGCAGCAAAAGAATG 58.562 33.333 0.00 3.15 37.38 2.67
134 135 9.195411 CATTTAACTTTAGCAGCAAAAGAATGA 57.805 29.630 0.00 0.00 37.38 2.57
135 136 9.762933 ATTTAACTTTAGCAGCAAAAGAATGAA 57.237 25.926 0.00 0.00 37.38 2.57
136 137 9.593134 TTTAACTTTAGCAGCAAAAGAATGAAA 57.407 25.926 0.00 0.00 37.38 2.69
137 138 9.762933 TTAACTTTAGCAGCAAAAGAATGAAAT 57.237 25.926 0.00 0.00 37.38 2.17
138 139 7.880059 ACTTTAGCAGCAAAAGAATGAAATC 57.120 32.000 0.00 0.00 37.38 2.17
139 140 6.583806 ACTTTAGCAGCAAAAGAATGAAATCG 59.416 34.615 0.00 0.00 37.38 3.34
140 141 4.510038 AGCAGCAAAAGAATGAAATCGT 57.490 36.364 0.00 0.00 0.00 3.73
141 142 4.479619 AGCAGCAAAAGAATGAAATCGTC 58.520 39.130 0.00 0.00 0.00 4.20
142 143 3.299020 GCAGCAAAAGAATGAAATCGTCG 59.701 43.478 0.00 0.00 0.00 5.12
143 144 3.848019 CAGCAAAAGAATGAAATCGTCGG 59.152 43.478 0.00 0.00 0.00 4.79
144 145 3.119849 AGCAAAAGAATGAAATCGTCGGG 60.120 43.478 0.00 0.00 0.00 5.14
145 146 3.171277 CAAAAGAATGAAATCGTCGGGC 58.829 45.455 0.00 0.00 0.00 6.13
146 147 2.107950 AAGAATGAAATCGTCGGGCA 57.892 45.000 0.00 0.00 0.00 5.36
147 148 2.107950 AGAATGAAATCGTCGGGCAA 57.892 45.000 0.00 0.00 0.00 4.52
148 149 2.432444 AGAATGAAATCGTCGGGCAAA 58.568 42.857 0.00 0.00 0.00 3.68
149 150 2.817258 AGAATGAAATCGTCGGGCAAAA 59.183 40.909 0.00 0.00 0.00 2.44
150 151 3.254657 AGAATGAAATCGTCGGGCAAAAA 59.745 39.130 0.00 0.00 0.00 1.94
151 152 2.409152 TGAAATCGTCGGGCAAAAAC 57.591 45.000 0.00 0.00 0.00 2.43
152 153 1.950909 TGAAATCGTCGGGCAAAAACT 59.049 42.857 0.00 0.00 0.00 2.66
153 154 3.139850 TGAAATCGTCGGGCAAAAACTA 58.860 40.909 0.00 0.00 0.00 2.24
154 155 3.754323 TGAAATCGTCGGGCAAAAACTAT 59.246 39.130 0.00 0.00 0.00 2.12
155 156 4.936411 TGAAATCGTCGGGCAAAAACTATA 59.064 37.500 0.00 0.00 0.00 1.31
156 157 5.587043 TGAAATCGTCGGGCAAAAACTATAT 59.413 36.000 0.00 0.00 0.00 0.86
157 158 6.762187 TGAAATCGTCGGGCAAAAACTATATA 59.238 34.615 0.00 0.00 0.00 0.86
158 159 6.535274 AATCGTCGGGCAAAAACTATATAC 57.465 37.500 0.00 0.00 0.00 1.47
159 160 5.008619 TCGTCGGGCAAAAACTATATACA 57.991 39.130 0.00 0.00 0.00 2.29
160 161 4.805192 TCGTCGGGCAAAAACTATATACAC 59.195 41.667 0.00 0.00 0.00 2.90
161 162 4.567558 CGTCGGGCAAAAACTATATACACA 59.432 41.667 0.00 0.00 0.00 3.72
162 163 5.063691 CGTCGGGCAAAAACTATATACACAA 59.936 40.000 0.00 0.00 0.00 3.33
163 164 6.253013 GTCGGGCAAAAACTATATACACAAC 58.747 40.000 0.00 0.00 0.00 3.32
164 165 5.938710 TCGGGCAAAAACTATATACACAACA 59.061 36.000 0.00 0.00 0.00 3.33
165 166 6.600032 TCGGGCAAAAACTATATACACAACAT 59.400 34.615 0.00 0.00 0.00 2.71
166 167 7.121463 TCGGGCAAAAACTATATACACAACATT 59.879 33.333 0.00 0.00 0.00 2.71
167 168 7.757624 CGGGCAAAAACTATATACACAACATTT 59.242 33.333 0.00 0.00 0.00 2.32
207 208 9.241919 ACACATCAACCAAATCATATAAGAACA 57.758 29.630 0.00 0.00 0.00 3.18
208 209 9.507280 CACATCAACCAAATCATATAAGAACAC 57.493 33.333 0.00 0.00 0.00 3.32
209 210 9.241919 ACATCAACCAAATCATATAAGAACACA 57.758 29.630 0.00 0.00 0.00 3.72
226 227 8.479313 AAGAACACAAATCTTTTGTTTTCCTC 57.521 30.769 20.14 5.42 38.93 3.71
227 228 7.840931 AGAACACAAATCTTTTGTTTTCCTCT 58.159 30.769 20.14 7.05 38.93 3.69
228 229 8.314021 AGAACACAAATCTTTTGTTTTCCTCTT 58.686 29.630 20.14 6.88 38.93 2.85
229 230 8.846943 AACACAAATCTTTTGTTTTCCTCTTT 57.153 26.923 2.99 0.00 28.92 2.52
230 231 9.936759 AACACAAATCTTTTGTTTTCCTCTTTA 57.063 25.926 2.99 0.00 28.92 1.85
231 232 9.366216 ACACAAATCTTTTGTTTTCCTCTTTAC 57.634 29.630 2.99 0.00 0.00 2.01
232 233 9.364989 CACAAATCTTTTGTTTTCCTCTTTACA 57.635 29.630 2.99 0.00 0.00 2.41
277 278 9.394767 ACACAAGTATCTAAAATATGTGCATCA 57.605 29.630 0.00 0.00 40.10 3.07
292 293 6.381481 TGTGCATCAATTAGCTTAAGATGG 57.619 37.500 6.67 0.00 37.23 3.51
293 294 5.887598 TGTGCATCAATTAGCTTAAGATGGT 59.112 36.000 6.67 0.00 37.23 3.55
294 295 6.183360 TGTGCATCAATTAGCTTAAGATGGTG 60.183 38.462 6.67 4.40 37.23 4.17
295 296 5.218139 GCATCAATTAGCTTAAGATGGTGC 58.782 41.667 6.67 10.24 37.94 5.01
296 297 5.221106 GCATCAATTAGCTTAAGATGGTGCA 60.221 40.000 18.01 0.00 41.43 4.57
297 298 6.516194 GCATCAATTAGCTTAAGATGGTGCAT 60.516 38.462 18.01 0.00 41.43 3.96
298 299 6.624352 TCAATTAGCTTAAGATGGTGCATC 57.376 37.500 6.67 0.00 40.80 3.91
309 310 1.522668 TGGTGCATCTGTACACAAGC 58.477 50.000 0.00 0.00 38.57 4.01
310 311 1.072173 TGGTGCATCTGTACACAAGCT 59.928 47.619 0.00 0.00 38.57 3.74
311 312 2.154462 GGTGCATCTGTACACAAGCTT 58.846 47.619 0.00 0.00 38.57 3.74
312 313 3.244387 TGGTGCATCTGTACACAAGCTTA 60.244 43.478 0.00 0.00 38.57 3.09
313 314 3.372206 GGTGCATCTGTACACAAGCTTAG 59.628 47.826 0.00 0.00 38.57 2.18
314 315 4.245660 GTGCATCTGTACACAAGCTTAGA 58.754 43.478 0.00 0.00 36.77 2.10
315 316 4.328440 GTGCATCTGTACACAAGCTTAGAG 59.672 45.833 0.00 0.00 36.77 2.43
316 317 4.021104 TGCATCTGTACACAAGCTTAGAGT 60.021 41.667 0.00 0.38 0.00 3.24
317 318 4.564769 GCATCTGTACACAAGCTTAGAGTC 59.435 45.833 0.00 0.00 0.00 3.36
318 319 5.714047 CATCTGTACACAAGCTTAGAGTCA 58.286 41.667 0.00 0.00 0.00 3.41
319 320 5.378292 TCTGTACACAAGCTTAGAGTCAG 57.622 43.478 0.00 6.25 0.00 3.51
320 321 4.218635 TCTGTACACAAGCTTAGAGTCAGG 59.781 45.833 0.00 0.00 0.00 3.86
321 322 3.895656 TGTACACAAGCTTAGAGTCAGGT 59.104 43.478 0.00 0.00 0.00 4.00
322 323 4.344102 TGTACACAAGCTTAGAGTCAGGTT 59.656 41.667 0.00 0.00 32.08 3.50
323 324 5.537295 TGTACACAAGCTTAGAGTCAGGTTA 59.463 40.000 0.00 0.00 30.75 2.85
324 325 5.746990 ACACAAGCTTAGAGTCAGGTTAT 57.253 39.130 0.00 0.00 30.75 1.89
325 326 6.115448 ACACAAGCTTAGAGTCAGGTTATT 57.885 37.500 0.00 0.00 30.75 1.40
326 327 5.934625 ACACAAGCTTAGAGTCAGGTTATTG 59.065 40.000 0.00 0.00 30.75 1.90
327 328 4.938226 ACAAGCTTAGAGTCAGGTTATTGC 59.062 41.667 0.00 0.00 30.75 3.56
328 329 5.181748 CAAGCTTAGAGTCAGGTTATTGCT 58.818 41.667 0.00 0.00 30.75 3.91
329 330 4.764172 AGCTTAGAGTCAGGTTATTGCTG 58.236 43.478 0.00 0.00 0.00 4.41
330 331 4.467795 AGCTTAGAGTCAGGTTATTGCTGA 59.532 41.667 0.00 0.00 0.00 4.26
331 332 4.568760 GCTTAGAGTCAGGTTATTGCTGAC 59.431 45.833 0.00 0.00 45.44 3.51
332 333 3.618690 AGAGTCAGGTTATTGCTGACC 57.381 47.619 0.47 0.00 46.03 4.02
333 334 2.237392 AGAGTCAGGTTATTGCTGACCC 59.763 50.000 0.47 0.00 46.03 4.46
334 335 1.066143 AGTCAGGTTATTGCTGACCCG 60.066 52.381 0.47 0.00 46.03 5.28
335 336 0.392461 TCAGGTTATTGCTGACCCGC 60.392 55.000 0.00 0.00 36.57 6.13
336 337 0.392998 CAGGTTATTGCTGACCCGCT 60.393 55.000 0.00 0.00 36.57 5.52
337 338 0.107654 AGGTTATTGCTGACCCGCTC 60.108 55.000 0.00 0.00 36.57 5.03
338 339 1.095807 GGTTATTGCTGACCCGCTCC 61.096 60.000 0.00 0.00 0.00 4.70
339 340 1.095807 GTTATTGCTGACCCGCTCCC 61.096 60.000 0.00 0.00 0.00 4.30
340 341 2.265467 TTATTGCTGACCCGCTCCCC 62.265 60.000 0.00 0.00 0.00 4.81
352 353 3.589542 CTCCCCCAGCCCCAACAA 61.590 66.667 0.00 0.00 0.00 2.83
353 354 3.589542 TCCCCCAGCCCCAACAAG 61.590 66.667 0.00 0.00 0.00 3.16
354 355 3.914713 CCCCCAGCCCCAACAAGT 61.915 66.667 0.00 0.00 0.00 3.16
355 356 2.201210 CCCCAGCCCCAACAAGTT 59.799 61.111 0.00 0.00 0.00 2.66
356 357 1.459348 CCCCAGCCCCAACAAGTTT 60.459 57.895 0.00 0.00 0.00 2.66
357 358 1.747774 CCCAGCCCCAACAAGTTTG 59.252 57.895 0.00 0.00 0.00 2.93
358 359 1.048160 CCCAGCCCCAACAAGTTTGT 61.048 55.000 0.00 0.00 44.72 2.83
373 374 7.713764 ACAAGTTTGTTCATTAAAGGATTGC 57.286 32.000 0.00 0.00 38.47 3.56
374 375 7.500141 ACAAGTTTGTTCATTAAAGGATTGCT 58.500 30.769 0.00 0.00 38.47 3.91
375 376 7.986889 ACAAGTTTGTTCATTAAAGGATTGCTT 59.013 29.630 0.00 0.00 38.47 3.91
376 377 7.951530 AGTTTGTTCATTAAAGGATTGCTTG 57.048 32.000 0.00 0.00 0.00 4.01
377 378 6.424812 AGTTTGTTCATTAAAGGATTGCTTGC 59.575 34.615 0.00 0.00 0.00 4.01
378 379 4.819769 TGTTCATTAAAGGATTGCTTGCC 58.180 39.130 0.00 0.00 0.00 4.52
379 380 3.781079 TCATTAAAGGATTGCTTGCCG 57.219 42.857 0.00 0.00 0.00 5.69
380 381 2.426738 TCATTAAAGGATTGCTTGCCGG 59.573 45.455 0.00 0.00 0.00 6.13
381 382 1.917872 TTAAAGGATTGCTTGCCGGT 58.082 45.000 1.90 0.00 0.00 5.28
382 383 1.173043 TAAAGGATTGCTTGCCGGTG 58.827 50.000 1.90 0.00 0.00 4.94
383 384 2.158561 AAAGGATTGCTTGCCGGTGC 62.159 55.000 1.90 6.28 38.26 5.01
392 393 4.393155 TGCCGGTGCATCTCGCTT 62.393 61.111 1.90 0.00 44.23 4.68
393 394 2.202878 GCCGGTGCATCTCGCTTA 60.203 61.111 1.90 0.00 43.06 3.09
394 395 1.813753 GCCGGTGCATCTCGCTTAA 60.814 57.895 1.90 0.00 43.06 1.85
395 396 1.766143 GCCGGTGCATCTCGCTTAAG 61.766 60.000 1.90 0.00 43.06 1.85
396 397 0.460284 CCGGTGCATCTCGCTTAAGT 60.460 55.000 4.02 0.00 43.06 2.24
397 398 1.359848 CGGTGCATCTCGCTTAAGTT 58.640 50.000 4.02 0.00 43.06 2.66
398 399 2.536365 CGGTGCATCTCGCTTAAGTTA 58.464 47.619 4.02 0.00 43.06 2.24
399 400 2.927477 CGGTGCATCTCGCTTAAGTTAA 59.073 45.455 4.02 0.00 43.06 2.01
400 401 3.000322 CGGTGCATCTCGCTTAAGTTAAG 60.000 47.826 16.87 16.87 43.06 1.85
416 417 9.944663 CTTAAGTTAAGCTTACAATCAACAACA 57.055 29.630 5.45 0.00 39.22 3.33
417 418 9.724839 TTAAGTTAAGCTTACAATCAACAACAC 57.275 29.630 5.45 0.00 39.22 3.32
418 419 7.568199 AGTTAAGCTTACAATCAACAACACT 57.432 32.000 5.45 0.00 0.00 3.55
419 420 7.417612 AGTTAAGCTTACAATCAACAACACTG 58.582 34.615 5.45 0.00 0.00 3.66
420 421 5.835113 AAGCTTACAATCAACAACACTGT 57.165 34.783 0.00 0.00 37.39 3.55
421 422 6.935741 AAGCTTACAATCAACAACACTGTA 57.064 33.333 0.00 0.00 33.45 2.74
422 423 6.545504 AGCTTACAATCAACAACACTGTAG 57.454 37.500 0.00 0.00 33.45 2.74
423 424 5.470098 AGCTTACAATCAACAACACTGTAGG 59.530 40.000 0.00 0.00 33.45 3.18
424 425 5.468746 GCTTACAATCAACAACACTGTAGGA 59.531 40.000 0.00 0.00 33.45 2.94
425 426 6.149474 GCTTACAATCAACAACACTGTAGGAT 59.851 38.462 0.00 0.00 33.45 3.24
426 427 7.308589 GCTTACAATCAACAACACTGTAGGATT 60.309 37.037 0.00 0.00 38.91 3.01
427 428 6.959639 ACAATCAACAACACTGTAGGATTT 57.040 33.333 0.00 0.00 37.49 2.17
428 429 9.562408 TTACAATCAACAACACTGTAGGATTTA 57.438 29.630 0.00 0.00 37.49 1.40
429 430 8.635765 ACAATCAACAACACTGTAGGATTTAT 57.364 30.769 0.00 0.00 37.49 1.40
430 431 9.733556 ACAATCAACAACACTGTAGGATTTATA 57.266 29.630 0.00 0.00 37.49 0.98
434 435 9.542462 TCAACAACACTGTAGGATTTATATAGC 57.458 33.333 0.00 0.00 33.45 2.97
435 436 9.325198 CAACAACACTGTAGGATTTATATAGCA 57.675 33.333 0.00 0.00 33.45 3.49
436 437 9.899661 AACAACACTGTAGGATTTATATAGCAA 57.100 29.630 0.00 0.00 33.45 3.91
437 438 9.547753 ACAACACTGTAGGATTTATATAGCAAG 57.452 33.333 0.00 0.00 32.54 4.01
438 439 9.764363 CAACACTGTAGGATTTATATAGCAAGA 57.236 33.333 0.00 0.00 0.00 3.02
441 442 9.295214 CACTGTAGGATTTATATAGCAAGATCG 57.705 37.037 0.00 0.00 0.00 3.69
442 443 9.244292 ACTGTAGGATTTATATAGCAAGATCGA 57.756 33.333 0.00 0.00 0.00 3.59
443 444 9.509855 CTGTAGGATTTATATAGCAAGATCGAC 57.490 37.037 0.00 0.00 0.00 4.20
444 445 9.020731 TGTAGGATTTATATAGCAAGATCGACA 57.979 33.333 0.00 0.00 0.00 4.35
445 446 9.291664 GTAGGATTTATATAGCAAGATCGACAC 57.708 37.037 0.00 0.00 0.00 3.67
446 447 8.128322 AGGATTTATATAGCAAGATCGACACT 57.872 34.615 0.00 0.00 0.00 3.55
447 448 8.589338 AGGATTTATATAGCAAGATCGACACTT 58.411 33.333 0.00 0.00 0.00 3.16
448 449 8.651588 GGATTTATATAGCAAGATCGACACTTG 58.348 37.037 22.01 22.01 44.92 3.16
449 450 9.197694 GATTTATATAGCAAGATCGACACTTGT 57.802 33.333 24.80 17.52 44.25 3.16
450 451 8.942338 TTTATATAGCAAGATCGACACTTGTT 57.058 30.769 24.80 22.64 44.25 2.83
451 452 8.575565 TTATATAGCAAGATCGACACTTGTTC 57.424 34.615 24.80 14.96 44.25 3.18
452 453 2.417719 AGCAAGATCGACACTTGTTCC 58.582 47.619 24.80 14.47 44.25 3.62
453 454 2.037772 AGCAAGATCGACACTTGTTCCT 59.962 45.455 24.80 15.86 44.25 3.36
454 455 3.258372 AGCAAGATCGACACTTGTTCCTA 59.742 43.478 24.80 0.00 44.25 2.94
455 456 3.368236 GCAAGATCGACACTTGTTCCTAC 59.632 47.826 24.80 11.21 44.25 3.18
456 457 4.556233 CAAGATCGACACTTGTTCCTACA 58.444 43.478 19.56 0.00 39.57 2.74
457 458 5.171476 CAAGATCGACACTTGTTCCTACAT 58.829 41.667 19.56 0.00 39.57 2.29
458 459 5.000012 AGATCGACACTTGTTCCTACATC 58.000 43.478 0.00 0.00 33.44 3.06
459 460 4.462834 AGATCGACACTTGTTCCTACATCA 59.537 41.667 0.00 0.00 33.44 3.07
460 461 4.174411 TCGACACTTGTTCCTACATCAG 57.826 45.455 0.00 0.00 33.44 2.90
461 462 3.572682 TCGACACTTGTTCCTACATCAGT 59.427 43.478 0.00 0.00 33.44 3.41
462 463 4.763279 TCGACACTTGTTCCTACATCAGTA 59.237 41.667 0.00 0.00 33.44 2.74
463 464 5.242171 TCGACACTTGTTCCTACATCAGTAA 59.758 40.000 0.00 0.00 33.44 2.24
464 465 5.924254 CGACACTTGTTCCTACATCAGTAAA 59.076 40.000 0.00 0.00 33.44 2.01
465 466 6.089551 CGACACTTGTTCCTACATCAGTAAAG 59.910 42.308 0.00 0.00 33.44 1.85
466 467 6.231211 ACACTTGTTCCTACATCAGTAAAGG 58.769 40.000 0.00 0.00 33.44 3.11
467 468 6.183361 ACACTTGTTCCTACATCAGTAAAGGT 60.183 38.462 0.00 0.00 33.44 3.50
468 469 7.015877 ACACTTGTTCCTACATCAGTAAAGGTA 59.984 37.037 0.00 0.00 33.44 3.08
469 470 7.876068 CACTTGTTCCTACATCAGTAAAGGTAA 59.124 37.037 0.00 0.00 33.44 2.85
470 471 8.434392 ACTTGTTCCTACATCAGTAAAGGTAAA 58.566 33.333 0.00 0.00 33.44 2.01
471 472 9.280174 CTTGTTCCTACATCAGTAAAGGTAAAA 57.720 33.333 0.00 0.00 33.44 1.52
472 473 9.629878 TTGTTCCTACATCAGTAAAGGTAAAAA 57.370 29.630 0.00 0.00 33.44 1.94
473 474 9.802039 TGTTCCTACATCAGTAAAGGTAAAAAT 57.198 29.630 0.00 0.00 0.00 1.82
475 476 9.802039 TTCCTACATCAGTAAAGGTAAAAATGT 57.198 29.630 0.00 0.00 0.00 2.71
494 495 9.865321 AAAAATGTAACTGTATCTAGCTACGAA 57.135 29.630 0.00 0.00 0.00 3.85
495 496 9.865321 AAAATGTAACTGTATCTAGCTACGAAA 57.135 29.630 0.00 0.00 0.00 3.46
496 497 9.865321 AAATGTAACTGTATCTAGCTACGAAAA 57.135 29.630 0.00 0.00 0.00 2.29
497 498 9.865321 AATGTAACTGTATCTAGCTACGAAAAA 57.135 29.630 0.00 0.00 0.00 1.94
499 500 9.297586 TGTAACTGTATCTAGCTACGAAAAATG 57.702 33.333 0.00 0.00 0.00 2.32
500 501 9.298774 GTAACTGTATCTAGCTACGAAAAATGT 57.701 33.333 0.00 0.00 0.00 2.71
502 503 9.517609 AACTGTATCTAGCTACGAAAAATGTAG 57.482 33.333 0.00 0.00 41.75 2.74
503 504 8.684520 ACTGTATCTAGCTACGAAAAATGTAGT 58.315 33.333 0.00 0.00 41.08 2.73
504 505 8.851960 TGTATCTAGCTACGAAAAATGTAGTG 57.148 34.615 0.00 0.00 41.08 2.74
505 506 8.680001 TGTATCTAGCTACGAAAAATGTAGTGA 58.320 33.333 0.00 0.46 41.08 3.41
506 507 9.512435 GTATCTAGCTACGAAAAATGTAGTGAA 57.488 33.333 0.00 0.00 41.08 3.18
507 508 8.635877 ATCTAGCTACGAAAAATGTAGTGAAG 57.364 34.615 0.00 0.00 41.08 3.02
508 509 7.600065 TCTAGCTACGAAAAATGTAGTGAAGT 58.400 34.615 0.00 0.00 41.08 3.01
509 510 8.086522 TCTAGCTACGAAAAATGTAGTGAAGTT 58.913 33.333 0.00 0.00 41.08 2.66
510 511 9.350357 CTAGCTACGAAAAATGTAGTGAAGTTA 57.650 33.333 0.00 0.00 41.08 2.24
511 512 8.773404 AGCTACGAAAAATGTAGTGAAGTTAT 57.227 30.769 0.00 0.00 41.08 1.89
512 513 9.216117 AGCTACGAAAAATGTAGTGAAGTTATT 57.784 29.630 0.00 0.00 41.08 1.40
513 514 9.821662 GCTACGAAAAATGTAGTGAAGTTATTT 57.178 29.630 0.00 0.00 41.08 1.40
528 529 9.603298 GTGAAGTTATTTTAGAAAAGGTTACGG 57.397 33.333 0.00 0.00 0.00 4.02
529 530 9.558396 TGAAGTTATTTTAGAAAAGGTTACGGA 57.442 29.630 0.00 0.00 0.00 4.69
539 540 9.558396 TTAGAAAAGGTTACGGATTTTAACTGA 57.442 29.630 0.00 0.00 31.26 3.41
540 541 7.868775 AGAAAAGGTTACGGATTTTAACTGAC 58.131 34.615 0.00 0.00 31.26 3.51
541 542 7.499895 AGAAAAGGTTACGGATTTTAACTGACA 59.500 33.333 0.00 0.00 31.26 3.58
542 543 7.571080 AAAGGTTACGGATTTTAACTGACAA 57.429 32.000 0.00 0.00 31.26 3.18
543 544 6.549912 AGGTTACGGATTTTAACTGACAAC 57.450 37.500 0.00 0.00 31.26 3.32
544 545 5.471116 AGGTTACGGATTTTAACTGACAACC 59.529 40.000 0.00 0.00 35.11 3.77
545 546 5.239087 GGTTACGGATTTTAACTGACAACCA 59.761 40.000 0.00 0.00 35.06 3.67
546 547 6.072342 GGTTACGGATTTTAACTGACAACCAT 60.072 38.462 0.00 0.00 35.06 3.55
547 548 7.364970 GTTACGGATTTTAACTGACAACCATT 58.635 34.615 0.00 0.00 0.00 3.16
548 549 6.009115 ACGGATTTTAACTGACAACCATTC 57.991 37.500 0.00 0.00 0.00 2.67
549 550 5.086058 CGGATTTTAACTGACAACCATTCG 58.914 41.667 0.00 0.00 0.00 3.34
550 551 5.334569 CGGATTTTAACTGACAACCATTCGT 60.335 40.000 0.00 0.00 0.00 3.85
551 552 6.084277 GGATTTTAACTGACAACCATTCGTC 58.916 40.000 0.00 0.00 0.00 4.20
552 553 6.293735 GGATTTTAACTGACAACCATTCGTCA 60.294 38.462 0.00 0.00 39.77 4.35
553 554 6.438259 TTTTAACTGACAACCATTCGTCAA 57.562 33.333 0.00 0.00 41.39 3.18
554 555 6.627395 TTTAACTGACAACCATTCGTCAAT 57.373 33.333 0.00 0.00 41.39 2.57
555 556 6.627395 TTAACTGACAACCATTCGTCAATT 57.373 33.333 0.00 0.00 41.39 2.32
556 557 7.731882 TTAACTGACAACCATTCGTCAATTA 57.268 32.000 0.00 0.00 41.39 1.40
557 558 6.627395 AACTGACAACCATTCGTCAATTAA 57.373 33.333 0.00 0.00 41.39 1.40
558 559 6.817765 ACTGACAACCATTCGTCAATTAAT 57.182 33.333 0.00 0.00 41.39 1.40
559 560 7.214467 ACTGACAACCATTCGTCAATTAATT 57.786 32.000 0.00 0.00 41.39 1.40
560 561 8.330466 ACTGACAACCATTCGTCAATTAATTA 57.670 30.769 0.00 0.00 41.39 1.40
561 562 8.234546 ACTGACAACCATTCGTCAATTAATTAC 58.765 33.333 0.00 0.00 41.39 1.89
562 563 8.330466 TGACAACCATTCGTCAATTAATTACT 57.670 30.769 0.00 0.00 39.14 2.24
563 564 8.788806 TGACAACCATTCGTCAATTAATTACTT 58.211 29.630 0.00 0.00 39.14 2.24
564 565 9.274065 GACAACCATTCGTCAATTAATTACTTC 57.726 33.333 0.00 0.00 32.24 3.01
565 566 9.010029 ACAACCATTCGTCAATTAATTACTTCT 57.990 29.630 0.00 0.00 0.00 2.85
584 585 6.641474 ACTTCTAGACCATTGGTTAAGTAGC 58.359 40.000 10.29 0.00 35.25 3.58
585 586 6.212791 ACTTCTAGACCATTGGTTAAGTAGCA 59.787 38.462 10.29 0.00 35.25 3.49
587 588 6.403878 TCTAGACCATTGGTTAAGTAGCAAC 58.596 40.000 10.29 0.00 46.13 4.17
588 589 4.332828 AGACCATTGGTTAAGTAGCAACC 58.667 43.478 10.29 0.00 46.13 3.77
603 604 3.684908 AGCAACCATTAAAATTTGGGGC 58.315 40.909 0.00 0.00 37.32 5.80
849 852 1.600663 CGTTGAGCAGAGAGTCGTTGT 60.601 52.381 0.00 0.00 0.00 3.32
1077 1106 0.827925 TGCCTGTCTTCGTCTGTCCT 60.828 55.000 0.00 0.00 0.00 3.85
1126 1155 1.116308 TTCTCACACACCGAGGAACA 58.884 50.000 0.00 0.00 0.00 3.18
1127 1156 1.338107 TCTCACACACCGAGGAACAT 58.662 50.000 0.00 0.00 0.00 2.71
1136 1166 1.825474 ACCGAGGAACATGAATCGTCT 59.175 47.619 17.37 4.16 33.43 4.18
1159 1189 0.917259 CTACGTGTGCAGCGAGAATC 59.083 55.000 16.16 0.00 0.00 2.52
1230 1261 2.299582 CAATGGGTTGATCTGTTTGGCA 59.700 45.455 0.00 0.00 37.53 4.92
1257 1288 3.254166 TGCAGGTGAAATGCTTCTTTCTC 59.746 43.478 0.00 5.17 44.17 2.87
1337 1368 1.525718 TTGTGCATGCTGCCACGAAT 61.526 50.000 20.33 0.00 44.23 3.34
1397 1428 1.436195 GGTGAAGCACGCACTGACAA 61.436 55.000 0.00 0.00 36.53 3.18
1406 1437 1.613925 ACGCACTGACAAAGAGCTAGA 59.386 47.619 0.00 0.00 40.07 2.43
1414 1445 5.011533 ACTGACAAAGAGCTAGATGTTGAGT 59.988 40.000 7.76 2.66 0.00 3.41
1435 1466 7.509546 TGAGTTTAGGATGTTGAAGAAGAAGT 58.490 34.615 0.00 0.00 0.00 3.01
1532 1563 2.546368 TCGCACTGGTTGTAATGTTGAC 59.454 45.455 0.00 0.00 0.00 3.18
1702 1739 5.490357 AGGGAGAAGAAATGAGGAATTCAGA 59.510 40.000 7.93 0.00 39.68 3.27
1813 1855 0.464452 GTGCCGGCTAGACTAATGGT 59.536 55.000 29.70 0.00 0.00 3.55
2024 2071 8.795842 AATTACTCCAATTCAAATACACCGTA 57.204 30.769 0.00 0.00 30.73 4.02
2098 2145 2.168728 GGTTTACACCTGGTGCCAAAAA 59.831 45.455 26.20 17.32 40.44 1.94
2241 2290 2.510691 GCGTTTAGGGCTGCGCTA 60.511 61.111 20.82 20.82 45.48 4.26
2291 2340 2.197465 GACATGGGTAGGGAAGGAAGT 58.803 52.381 0.00 0.00 0.00 3.01
2334 2405 0.249114 TTTGCACACGCGTGAGAGTA 60.249 50.000 42.94 27.17 46.80 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.664332 GATGATGGCAGTATCTGACTATTTATT 57.336 33.333 4.24 0.00 40.76 1.40
5 6 8.819845 TGATGATGGCAGTATCTGACTATTTAT 58.180 33.333 12.96 0.00 40.76 1.40
6 7 8.193953 TGATGATGGCAGTATCTGACTATTTA 57.806 34.615 12.96 0.00 40.76 1.40
7 8 7.071069 TGATGATGGCAGTATCTGACTATTT 57.929 36.000 12.96 0.00 40.76 1.40
8 9 6.676990 TGATGATGGCAGTATCTGACTATT 57.323 37.500 12.96 0.00 40.76 1.73
9 10 6.870895 ATGATGATGGCAGTATCTGACTAT 57.129 37.500 12.96 0.00 40.76 2.12
10 11 6.676990 AATGATGATGGCAGTATCTGACTA 57.323 37.500 12.96 0.00 40.76 2.59
11 12 5.563876 AATGATGATGGCAGTATCTGACT 57.436 39.130 12.96 0.00 40.76 3.41
12 13 5.530171 ACAAATGATGATGGCAGTATCTGAC 59.470 40.000 12.96 0.00 40.49 3.51
13 14 5.687780 ACAAATGATGATGGCAGTATCTGA 58.312 37.500 12.96 0.00 32.44 3.27
14 15 6.183360 ACAACAAATGATGATGGCAGTATCTG 60.183 38.462 12.96 7.32 36.21 2.90
15 16 5.889853 ACAACAAATGATGATGGCAGTATCT 59.110 36.000 12.96 0.02 36.21 1.98
16 17 6.140303 ACAACAAATGATGATGGCAGTATC 57.860 37.500 6.77 6.77 36.21 2.24
17 18 6.534475 AACAACAAATGATGATGGCAGTAT 57.466 33.333 0.00 0.00 36.21 2.12
18 19 5.981088 AACAACAAATGATGATGGCAGTA 57.019 34.783 0.00 0.00 36.21 2.74
19 20 4.877378 AACAACAAATGATGATGGCAGT 57.123 36.364 0.00 0.00 36.21 4.40
20 21 5.105635 ACCTAACAACAAATGATGATGGCAG 60.106 40.000 0.00 0.00 36.21 4.85
21 22 4.771577 ACCTAACAACAAATGATGATGGCA 59.228 37.500 0.00 0.00 36.21 4.92
22 23 5.329035 ACCTAACAACAAATGATGATGGC 57.671 39.130 0.00 0.00 36.21 4.40
23 24 6.974622 GCTAACCTAACAACAAATGATGATGG 59.025 38.462 0.00 0.28 36.21 3.51
24 25 6.974622 GGCTAACCTAACAACAAATGATGATG 59.025 38.462 0.00 0.00 37.79 3.07
25 26 6.096846 GGGCTAACCTAACAACAAATGATGAT 59.903 38.462 0.00 0.00 35.85 2.45
26 27 5.417580 GGGCTAACCTAACAACAAATGATGA 59.582 40.000 0.00 0.00 35.85 2.92
27 28 5.184864 TGGGCTAACCTAACAACAAATGATG 59.815 40.000 0.00 0.00 41.11 3.07
28 29 5.329399 TGGGCTAACCTAACAACAAATGAT 58.671 37.500 0.00 0.00 41.11 2.45
29 30 4.730966 TGGGCTAACCTAACAACAAATGA 58.269 39.130 0.00 0.00 41.11 2.57
30 31 5.461032 TTGGGCTAACCTAACAACAAATG 57.539 39.130 0.00 0.00 41.11 2.32
31 32 6.487299 TTTTGGGCTAACCTAACAACAAAT 57.513 33.333 0.00 0.00 35.91 2.32
32 33 5.934402 TTTTGGGCTAACCTAACAACAAA 57.066 34.783 0.00 0.00 35.91 2.83
33 34 5.364157 ACATTTTGGGCTAACCTAACAACAA 59.636 36.000 0.00 0.00 35.91 2.83
34 35 4.896482 ACATTTTGGGCTAACCTAACAACA 59.104 37.500 0.00 0.00 35.91 3.33
35 36 5.227152 CACATTTTGGGCTAACCTAACAAC 58.773 41.667 0.00 0.00 35.91 3.32
36 37 4.262249 GCACATTTTGGGCTAACCTAACAA 60.262 41.667 0.00 0.00 45.01 2.83
37 38 3.257127 GCACATTTTGGGCTAACCTAACA 59.743 43.478 0.00 0.00 45.01 2.41
38 39 3.845178 GCACATTTTGGGCTAACCTAAC 58.155 45.455 0.00 0.00 45.01 2.34
48 49 1.003262 CGTCGCAAGCACATTTTGGG 61.003 55.000 0.00 0.00 39.15 4.12
49 50 1.608093 GCGTCGCAAGCACATTTTGG 61.608 55.000 13.44 0.00 37.18 3.28
50 51 0.661187 AGCGTCGCAAGCACATTTTG 60.661 50.000 21.09 0.00 37.01 2.44
51 52 0.030638 AAGCGTCGCAAGCACATTTT 59.969 45.000 21.09 0.00 37.01 1.82
52 53 0.871722 TAAGCGTCGCAAGCACATTT 59.128 45.000 21.09 4.64 37.01 2.32
53 54 0.871722 TTAAGCGTCGCAAGCACATT 59.128 45.000 21.09 5.41 37.01 2.71
54 55 0.871722 TTTAAGCGTCGCAAGCACAT 59.128 45.000 21.09 0.00 37.01 3.21
55 56 0.658368 TTTTAAGCGTCGCAAGCACA 59.342 45.000 21.09 0.00 37.01 4.57
56 57 1.749153 TTTTTAAGCGTCGCAAGCAC 58.251 45.000 21.09 0.00 37.01 4.40
96 97 9.742144 TGCTAAAGTTAAATGGTCATTAAGGTA 57.258 29.630 0.00 0.00 0.00 3.08
97 98 8.644374 TGCTAAAGTTAAATGGTCATTAAGGT 57.356 30.769 0.00 0.00 0.00 3.50
98 99 7.702348 GCTGCTAAAGTTAAATGGTCATTAAGG 59.298 37.037 0.00 0.00 0.00 2.69
99 100 8.243426 TGCTGCTAAAGTTAAATGGTCATTAAG 58.757 33.333 0.00 0.00 0.00 1.85
100 101 8.116651 TGCTGCTAAAGTTAAATGGTCATTAA 57.883 30.769 0.00 0.00 0.00 1.40
101 102 7.695480 TGCTGCTAAAGTTAAATGGTCATTA 57.305 32.000 0.00 0.00 0.00 1.90
102 103 6.588719 TGCTGCTAAAGTTAAATGGTCATT 57.411 33.333 0.00 0.00 0.00 2.57
103 104 6.588719 TTGCTGCTAAAGTTAAATGGTCAT 57.411 33.333 0.00 0.00 0.00 3.06
104 105 6.398234 TTTGCTGCTAAAGTTAAATGGTCA 57.602 33.333 0.00 0.00 0.00 4.02
105 106 7.145323 TCTTTTGCTGCTAAAGTTAAATGGTC 58.855 34.615 27.16 0.00 34.86 4.02
106 107 7.049799 TCTTTTGCTGCTAAAGTTAAATGGT 57.950 32.000 27.16 0.00 34.86 3.55
107 108 7.945033 TTCTTTTGCTGCTAAAGTTAAATGG 57.055 32.000 27.16 8.52 34.86 3.16
108 109 9.195411 TCATTCTTTTGCTGCTAAAGTTAAATG 57.805 29.630 27.16 26.15 34.86 2.32
109 110 9.762933 TTCATTCTTTTGCTGCTAAAGTTAAAT 57.237 25.926 27.16 19.54 34.86 1.40
110 111 9.593134 TTTCATTCTTTTGCTGCTAAAGTTAAA 57.407 25.926 27.16 20.56 34.86 1.52
111 112 9.762933 ATTTCATTCTTTTGCTGCTAAAGTTAA 57.237 25.926 27.16 19.04 34.86 2.01
112 113 9.410556 GATTTCATTCTTTTGCTGCTAAAGTTA 57.589 29.630 27.16 19.61 34.86 2.24
113 114 7.115378 CGATTTCATTCTTTTGCTGCTAAAGTT 59.885 33.333 27.16 17.42 34.86 2.66
114 115 6.583806 CGATTTCATTCTTTTGCTGCTAAAGT 59.416 34.615 27.16 13.02 34.86 2.66
115 116 6.583806 ACGATTTCATTCTTTTGCTGCTAAAG 59.416 34.615 24.21 24.21 34.63 1.85
116 117 6.446318 ACGATTTCATTCTTTTGCTGCTAAA 58.554 32.000 8.83 8.83 0.00 1.85
117 118 6.012658 ACGATTTCATTCTTTTGCTGCTAA 57.987 33.333 0.00 0.00 0.00 3.09
118 119 5.627499 ACGATTTCATTCTTTTGCTGCTA 57.373 34.783 0.00 0.00 0.00 3.49
119 120 4.479619 GACGATTTCATTCTTTTGCTGCT 58.520 39.130 0.00 0.00 0.00 4.24
120 121 3.299020 CGACGATTTCATTCTTTTGCTGC 59.701 43.478 0.00 0.00 0.00 5.25
121 122 3.848019 CCGACGATTTCATTCTTTTGCTG 59.152 43.478 0.00 0.00 0.00 4.41
122 123 3.119849 CCCGACGATTTCATTCTTTTGCT 60.120 43.478 0.00 0.00 0.00 3.91
123 124 3.171277 CCCGACGATTTCATTCTTTTGC 58.829 45.455 0.00 0.00 0.00 3.68
124 125 3.171277 GCCCGACGATTTCATTCTTTTG 58.829 45.455 0.00 0.00 0.00 2.44
125 126 2.817258 TGCCCGACGATTTCATTCTTTT 59.183 40.909 0.00 0.00 0.00 2.27
126 127 2.432444 TGCCCGACGATTTCATTCTTT 58.568 42.857 0.00 0.00 0.00 2.52
127 128 2.107950 TGCCCGACGATTTCATTCTT 57.892 45.000 0.00 0.00 0.00 2.52
128 129 2.107950 TTGCCCGACGATTTCATTCT 57.892 45.000 0.00 0.00 0.00 2.40
129 130 2.911819 TTTGCCCGACGATTTCATTC 57.088 45.000 0.00 0.00 0.00 2.67
130 131 3.005367 AGTTTTTGCCCGACGATTTCATT 59.995 39.130 0.00 0.00 0.00 2.57
131 132 2.556622 AGTTTTTGCCCGACGATTTCAT 59.443 40.909 0.00 0.00 0.00 2.57
132 133 1.950909 AGTTTTTGCCCGACGATTTCA 59.049 42.857 0.00 0.00 0.00 2.69
133 134 2.699251 AGTTTTTGCCCGACGATTTC 57.301 45.000 0.00 0.00 0.00 2.17
134 135 6.539464 TGTATATAGTTTTTGCCCGACGATTT 59.461 34.615 0.00 0.00 0.00 2.17
135 136 6.018507 GTGTATATAGTTTTTGCCCGACGATT 60.019 38.462 0.00 0.00 0.00 3.34
136 137 5.464389 GTGTATATAGTTTTTGCCCGACGAT 59.536 40.000 0.00 0.00 0.00 3.73
137 138 4.805192 GTGTATATAGTTTTTGCCCGACGA 59.195 41.667 0.00 0.00 0.00 4.20
138 139 4.567558 TGTGTATATAGTTTTTGCCCGACG 59.432 41.667 0.00 0.00 0.00 5.12
139 140 6.128227 TGTTGTGTATATAGTTTTTGCCCGAC 60.128 38.462 0.00 0.00 0.00 4.79
140 141 5.938710 TGTTGTGTATATAGTTTTTGCCCGA 59.061 36.000 0.00 0.00 0.00 5.14
141 142 6.184580 TGTTGTGTATATAGTTTTTGCCCG 57.815 37.500 0.00 0.00 0.00 6.13
142 143 8.996024 AAATGTTGTGTATATAGTTTTTGCCC 57.004 30.769 0.00 0.00 0.00 5.36
181 182 9.241919 TGTTCTTATATGATTTGGTTGATGTGT 57.758 29.630 0.00 0.00 0.00 3.72
182 183 9.507280 GTGTTCTTATATGATTTGGTTGATGTG 57.493 33.333 0.00 0.00 0.00 3.21
183 184 9.241919 TGTGTTCTTATATGATTTGGTTGATGT 57.758 29.630 0.00 0.00 0.00 3.06
200 201 9.581099 GAGGAAAACAAAAGATTTGTGTTCTTA 57.419 29.630 26.06 0.00 43.03 2.10
201 202 8.314021 AGAGGAAAACAAAAGATTTGTGTTCTT 58.686 29.630 26.06 22.29 43.03 2.52
202 203 7.840931 AGAGGAAAACAAAAGATTTGTGTTCT 58.159 30.769 26.06 17.43 43.03 3.01
203 204 8.479313 AAGAGGAAAACAAAAGATTTGTGTTC 57.521 30.769 22.12 22.12 42.84 3.18
204 205 8.846943 AAAGAGGAAAACAAAAGATTTGTGTT 57.153 26.923 10.35 10.35 37.07 3.32
205 206 9.366216 GTAAAGAGGAAAACAAAAGATTTGTGT 57.634 29.630 9.05 1.22 32.22 3.72
206 207 9.364989 TGTAAAGAGGAAAACAAAAGATTTGTG 57.635 29.630 9.05 0.00 32.22 3.33
251 252 9.394767 TGATGCACATATTTTAGATACTTGTGT 57.605 29.630 0.00 0.00 36.32 3.72
266 267 8.737175 CCATCTTAAGCTAATTGATGCACATAT 58.263 33.333 0.00 0.00 34.79 1.78
267 268 7.720957 ACCATCTTAAGCTAATTGATGCACATA 59.279 33.333 0.00 0.00 34.79 2.29
268 269 6.548622 ACCATCTTAAGCTAATTGATGCACAT 59.451 34.615 0.00 0.00 34.79 3.21
269 270 5.887598 ACCATCTTAAGCTAATTGATGCACA 59.112 36.000 0.00 0.00 34.79 4.57
270 271 6.204359 CACCATCTTAAGCTAATTGATGCAC 58.796 40.000 0.00 0.00 34.79 4.57
271 272 5.221106 GCACCATCTTAAGCTAATTGATGCA 60.221 40.000 0.00 0.00 34.79 3.96
272 273 5.218139 GCACCATCTTAAGCTAATTGATGC 58.782 41.667 0.00 0.00 34.79 3.91
273 274 6.381481 TGCACCATCTTAAGCTAATTGATG 57.619 37.500 0.00 10.21 35.59 3.07
274 275 7.211966 GATGCACCATCTTAAGCTAATTGAT 57.788 36.000 0.00 0.00 37.82 2.57
275 276 6.624352 GATGCACCATCTTAAGCTAATTGA 57.376 37.500 0.00 0.00 37.82 2.57
288 289 2.096496 GCTTGTGTACAGATGCACCATC 59.904 50.000 21.50 0.00 40.47 3.51
289 290 2.086869 GCTTGTGTACAGATGCACCAT 58.913 47.619 21.50 0.00 40.47 3.55
290 291 1.072173 AGCTTGTGTACAGATGCACCA 59.928 47.619 26.10 5.01 40.47 4.17
291 292 1.813513 AGCTTGTGTACAGATGCACC 58.186 50.000 26.10 2.49 40.47 5.01
292 293 4.245660 TCTAAGCTTGTGTACAGATGCAC 58.754 43.478 26.10 3.17 41.48 4.57
293 294 4.021104 ACTCTAAGCTTGTGTACAGATGCA 60.021 41.667 26.10 10.86 0.00 3.96
294 295 4.499183 ACTCTAAGCTTGTGTACAGATGC 58.501 43.478 19.57 19.57 0.00 3.91
295 296 5.714047 TGACTCTAAGCTTGTGTACAGATG 58.286 41.667 9.86 0.00 0.00 2.90
296 297 5.105554 CCTGACTCTAAGCTTGTGTACAGAT 60.106 44.000 9.86 0.00 0.00 2.90
297 298 4.218635 CCTGACTCTAAGCTTGTGTACAGA 59.781 45.833 9.86 1.38 0.00 3.41
298 299 4.021894 ACCTGACTCTAAGCTTGTGTACAG 60.022 45.833 9.86 12.43 0.00 2.74
299 300 3.895656 ACCTGACTCTAAGCTTGTGTACA 59.104 43.478 9.86 0.00 0.00 2.90
300 301 4.522722 ACCTGACTCTAAGCTTGTGTAC 57.477 45.455 9.86 0.00 0.00 2.90
301 302 6.852420 ATAACCTGACTCTAAGCTTGTGTA 57.148 37.500 9.86 0.00 0.00 2.90
302 303 5.746990 ATAACCTGACTCTAAGCTTGTGT 57.253 39.130 9.86 4.84 0.00 3.72
303 304 5.163814 GCAATAACCTGACTCTAAGCTTGTG 60.164 44.000 9.86 1.82 0.00 3.33
304 305 4.938226 GCAATAACCTGACTCTAAGCTTGT 59.062 41.667 9.86 0.00 0.00 3.16
305 306 5.064452 CAGCAATAACCTGACTCTAAGCTTG 59.936 44.000 9.86 0.00 32.03 4.01
306 307 5.046304 TCAGCAATAACCTGACTCTAAGCTT 60.046 40.000 3.48 3.48 34.59 3.74
307 308 4.467795 TCAGCAATAACCTGACTCTAAGCT 59.532 41.667 0.00 0.00 34.59 3.74
308 309 4.759782 TCAGCAATAACCTGACTCTAAGC 58.240 43.478 0.00 0.00 34.59 3.09
316 317 0.392461 GCGGGTCAGCAATAACCTGA 60.392 55.000 4.57 0.00 37.01 3.86
317 318 0.392998 AGCGGGTCAGCAATAACCTG 60.393 55.000 0.00 0.00 40.15 4.00
318 319 0.107654 GAGCGGGTCAGCAATAACCT 60.108 55.000 1.64 0.00 40.15 3.50
319 320 1.095807 GGAGCGGGTCAGCAATAACC 61.096 60.000 9.66 0.00 40.15 2.85
320 321 1.095807 GGGAGCGGGTCAGCAATAAC 61.096 60.000 9.66 0.00 40.15 1.89
321 322 1.223487 GGGAGCGGGTCAGCAATAA 59.777 57.895 9.66 0.00 40.15 1.40
322 323 2.742116 GGGGAGCGGGTCAGCAATA 61.742 63.158 9.66 0.00 40.15 1.90
323 324 4.115199 GGGGAGCGGGTCAGCAAT 62.115 66.667 9.66 0.00 40.15 3.56
335 336 3.589542 TTGTTGGGGCTGGGGGAG 61.590 66.667 0.00 0.00 0.00 4.30
336 337 3.589542 CTTGTTGGGGCTGGGGGA 61.590 66.667 0.00 0.00 0.00 4.81
337 338 2.963391 AAACTTGTTGGGGCTGGGGG 62.963 60.000 0.00 0.00 0.00 5.40
338 339 1.459348 AAACTTGTTGGGGCTGGGG 60.459 57.895 0.00 0.00 0.00 4.96
339 340 1.048160 ACAAACTTGTTGGGGCTGGG 61.048 55.000 0.00 0.00 38.47 4.45
340 341 2.515288 ACAAACTTGTTGGGGCTGG 58.485 52.632 0.00 0.00 38.47 4.85
349 350 7.500141 AGCAATCCTTTAATGAACAAACTTGT 58.500 30.769 0.00 0.00 44.72 3.16
350 351 7.951530 AGCAATCCTTTAATGAACAAACTTG 57.048 32.000 0.00 0.00 0.00 3.16
351 352 7.041848 GCAAGCAATCCTTTAATGAACAAACTT 60.042 33.333 0.00 0.00 0.00 2.66
352 353 6.424812 GCAAGCAATCCTTTAATGAACAAACT 59.575 34.615 0.00 0.00 0.00 2.66
353 354 6.347644 GGCAAGCAATCCTTTAATGAACAAAC 60.348 38.462 0.00 0.00 0.00 2.93
354 355 5.700373 GGCAAGCAATCCTTTAATGAACAAA 59.300 36.000 0.00 0.00 0.00 2.83
355 356 5.237048 GGCAAGCAATCCTTTAATGAACAA 58.763 37.500 0.00 0.00 0.00 2.83
356 357 4.617995 CGGCAAGCAATCCTTTAATGAACA 60.618 41.667 0.00 0.00 0.00 3.18
357 358 3.859386 CGGCAAGCAATCCTTTAATGAAC 59.141 43.478 0.00 0.00 0.00 3.18
358 359 3.119173 CCGGCAAGCAATCCTTTAATGAA 60.119 43.478 0.00 0.00 0.00 2.57
359 360 2.426738 CCGGCAAGCAATCCTTTAATGA 59.573 45.455 0.00 0.00 0.00 2.57
360 361 2.166254 ACCGGCAAGCAATCCTTTAATG 59.834 45.455 0.00 0.00 0.00 1.90
361 362 2.166254 CACCGGCAAGCAATCCTTTAAT 59.834 45.455 0.00 0.00 0.00 1.40
362 363 1.543802 CACCGGCAAGCAATCCTTTAA 59.456 47.619 0.00 0.00 0.00 1.52
363 364 1.173043 CACCGGCAAGCAATCCTTTA 58.827 50.000 0.00 0.00 0.00 1.85
364 365 1.966762 CACCGGCAAGCAATCCTTT 59.033 52.632 0.00 0.00 0.00 3.11
365 366 2.639327 GCACCGGCAAGCAATCCTT 61.639 57.895 0.00 0.00 40.72 3.36
366 367 3.064324 GCACCGGCAAGCAATCCT 61.064 61.111 0.00 0.00 40.72 3.24
390 391 9.944663 TGTTGTTGATTGTAAGCTTAACTTAAG 57.055 29.630 7.99 0.00 42.50 1.85
391 392 9.724839 GTGTTGTTGATTGTAAGCTTAACTTAA 57.275 29.630 7.99 2.27 42.50 1.85
392 393 9.116067 AGTGTTGTTGATTGTAAGCTTAACTTA 57.884 29.630 7.99 0.00 39.97 2.24
393 394 7.915397 CAGTGTTGTTGATTGTAAGCTTAACTT 59.085 33.333 7.99 0.00 42.76 2.66
394 395 7.067008 ACAGTGTTGTTGATTGTAAGCTTAACT 59.933 33.333 7.99 0.49 32.28 2.24
395 396 7.193595 ACAGTGTTGTTGATTGTAAGCTTAAC 58.806 34.615 7.99 4.14 32.28 2.01
396 397 7.328277 ACAGTGTTGTTGATTGTAAGCTTAA 57.672 32.000 7.99 0.00 32.28 1.85
397 398 6.935741 ACAGTGTTGTTGATTGTAAGCTTA 57.064 33.333 0.86 0.86 32.28 3.09
398 399 5.835113 ACAGTGTTGTTGATTGTAAGCTT 57.165 34.783 3.48 3.48 32.28 3.74
399 400 5.470098 CCTACAGTGTTGTTGATTGTAAGCT 59.530 40.000 0.00 0.00 38.76 3.74
400 401 5.468746 TCCTACAGTGTTGTTGATTGTAAGC 59.531 40.000 0.00 0.00 38.76 3.09
401 402 7.672983 ATCCTACAGTGTTGTTGATTGTAAG 57.327 36.000 0.00 0.00 38.76 2.34
402 403 8.458573 AAATCCTACAGTGTTGTTGATTGTAA 57.541 30.769 0.00 0.00 37.50 2.41
403 404 9.733556 ATAAATCCTACAGTGTTGTTGATTGTA 57.266 29.630 0.00 2.40 37.50 2.41
404 405 6.959639 AAATCCTACAGTGTTGTTGATTGT 57.040 33.333 0.00 0.00 37.50 2.71
408 409 9.542462 GCTATATAAATCCTACAGTGTTGTTGA 57.458 33.333 0.00 0.00 38.76 3.18
409 410 9.325198 TGCTATATAAATCCTACAGTGTTGTTG 57.675 33.333 0.00 0.00 38.76 3.33
410 411 9.899661 TTGCTATATAAATCCTACAGTGTTGTT 57.100 29.630 0.00 0.00 38.76 2.83
411 412 9.547753 CTTGCTATATAAATCCTACAGTGTTGT 57.452 33.333 0.00 0.00 41.39 3.32
412 413 9.764363 TCTTGCTATATAAATCCTACAGTGTTG 57.236 33.333 0.00 0.00 0.00 3.33
415 416 9.295214 CGATCTTGCTATATAAATCCTACAGTG 57.705 37.037 0.00 0.00 0.00 3.66
416 417 9.244292 TCGATCTTGCTATATAAATCCTACAGT 57.756 33.333 0.00 0.00 0.00 3.55
417 418 9.509855 GTCGATCTTGCTATATAAATCCTACAG 57.490 37.037 0.00 0.00 0.00 2.74
418 419 9.020731 TGTCGATCTTGCTATATAAATCCTACA 57.979 33.333 0.00 0.00 0.00 2.74
419 420 9.291664 GTGTCGATCTTGCTATATAAATCCTAC 57.708 37.037 0.00 0.00 0.00 3.18
420 421 9.244292 AGTGTCGATCTTGCTATATAAATCCTA 57.756 33.333 0.00 0.00 0.00 2.94
421 422 8.128322 AGTGTCGATCTTGCTATATAAATCCT 57.872 34.615 0.00 0.00 0.00 3.24
422 423 8.651588 CAAGTGTCGATCTTGCTATATAAATCC 58.348 37.037 16.27 0.00 36.38 3.01
423 424 9.197694 ACAAGTGTCGATCTTGCTATATAAATC 57.802 33.333 23.55 0.00 43.97 2.17
424 425 9.547753 AACAAGTGTCGATCTTGCTATATAAAT 57.452 29.630 23.55 7.10 43.97 1.40
425 426 8.942338 AACAAGTGTCGATCTTGCTATATAAA 57.058 30.769 23.55 0.00 43.97 1.40
426 427 7.652105 GGAACAAGTGTCGATCTTGCTATATAA 59.348 37.037 23.55 0.00 43.97 0.98
427 428 7.014326 AGGAACAAGTGTCGATCTTGCTATATA 59.986 37.037 23.55 0.00 43.97 0.86
428 429 5.986135 GGAACAAGTGTCGATCTTGCTATAT 59.014 40.000 23.55 11.51 43.97 0.86
429 430 5.127194 AGGAACAAGTGTCGATCTTGCTATA 59.873 40.000 23.55 0.00 43.97 1.31
430 431 4.081420 AGGAACAAGTGTCGATCTTGCTAT 60.081 41.667 23.55 14.92 43.97 2.97
431 432 3.258372 AGGAACAAGTGTCGATCTTGCTA 59.742 43.478 23.55 0.00 43.97 3.49
432 433 2.037772 AGGAACAAGTGTCGATCTTGCT 59.962 45.455 23.55 16.42 43.97 3.91
433 434 2.417719 AGGAACAAGTGTCGATCTTGC 58.582 47.619 23.55 13.67 43.97 4.01
434 435 4.556233 TGTAGGAACAAGTGTCGATCTTG 58.444 43.478 22.64 22.64 45.15 3.02
435 436 4.866508 TGTAGGAACAAGTGTCGATCTT 57.133 40.909 0.00 0.00 30.91 2.40
436 437 4.462834 TGATGTAGGAACAAGTGTCGATCT 59.537 41.667 0.00 0.00 39.58 2.75
437 438 4.744570 TGATGTAGGAACAAGTGTCGATC 58.255 43.478 0.00 0.00 39.58 3.69
438 439 4.220821 ACTGATGTAGGAACAAGTGTCGAT 59.779 41.667 0.00 0.00 39.58 3.59
439 440 3.572682 ACTGATGTAGGAACAAGTGTCGA 59.427 43.478 0.00 0.00 39.58 4.20
440 441 3.914312 ACTGATGTAGGAACAAGTGTCG 58.086 45.455 0.00 0.00 39.58 4.35
441 442 6.369065 CCTTTACTGATGTAGGAACAAGTGTC 59.631 42.308 0.00 0.00 39.58 3.67
442 443 6.183361 ACCTTTACTGATGTAGGAACAAGTGT 60.183 38.462 0.00 0.00 39.58 3.55
443 444 6.231211 ACCTTTACTGATGTAGGAACAAGTG 58.769 40.000 0.00 0.00 39.58 3.16
444 445 6.435292 ACCTTTACTGATGTAGGAACAAGT 57.565 37.500 0.00 0.00 39.58 3.16
445 446 8.842358 TTTACCTTTACTGATGTAGGAACAAG 57.158 34.615 0.00 0.00 39.58 3.16
446 447 9.629878 TTTTTACCTTTACTGATGTAGGAACAA 57.370 29.630 0.00 0.00 39.58 2.83
447 448 9.802039 ATTTTTACCTTTACTGATGTAGGAACA 57.198 29.630 0.00 0.00 40.69 3.18
449 450 9.802039 ACATTTTTACCTTTACTGATGTAGGAA 57.198 29.630 0.00 0.00 0.00 3.36
468 469 9.865321 TTCGTAGCTAGATACAGTTACATTTTT 57.135 29.630 17.74 0.00 33.27 1.94
469 470 9.865321 TTTCGTAGCTAGATACAGTTACATTTT 57.135 29.630 17.74 0.00 33.27 1.82
470 471 9.865321 TTTTCGTAGCTAGATACAGTTACATTT 57.135 29.630 17.74 0.00 33.27 2.32
471 472 9.865321 TTTTTCGTAGCTAGATACAGTTACATT 57.135 29.630 17.74 0.00 33.27 2.71
473 474 9.297586 CATTTTTCGTAGCTAGATACAGTTACA 57.702 33.333 17.74 0.00 33.27 2.41
474 475 9.298774 ACATTTTTCGTAGCTAGATACAGTTAC 57.701 33.333 17.74 0.00 0.00 2.50
476 477 9.517609 CTACATTTTTCGTAGCTAGATACAGTT 57.482 33.333 17.74 0.00 30.66 3.16
477 478 8.684520 ACTACATTTTTCGTAGCTAGATACAGT 58.315 33.333 17.74 7.42 40.03 3.55
478 479 8.959058 CACTACATTTTTCGTAGCTAGATACAG 58.041 37.037 17.74 10.50 40.03 2.74
479 480 8.680001 TCACTACATTTTTCGTAGCTAGATACA 58.320 33.333 17.74 2.99 40.03 2.29
480 481 9.512435 TTCACTACATTTTTCGTAGCTAGATAC 57.488 33.333 8.13 8.13 40.03 2.24
481 482 9.731819 CTTCACTACATTTTTCGTAGCTAGATA 57.268 33.333 0.00 0.00 40.03 1.98
482 483 8.251721 ACTTCACTACATTTTTCGTAGCTAGAT 58.748 33.333 0.00 0.00 40.03 1.98
483 484 7.600065 ACTTCACTACATTTTTCGTAGCTAGA 58.400 34.615 0.00 0.00 40.03 2.43
484 485 7.813852 ACTTCACTACATTTTTCGTAGCTAG 57.186 36.000 0.00 0.00 40.03 3.42
485 486 9.865321 ATAACTTCACTACATTTTTCGTAGCTA 57.135 29.630 0.00 0.00 40.03 3.32
486 487 8.773404 ATAACTTCACTACATTTTTCGTAGCT 57.227 30.769 0.00 0.00 40.03 3.32
487 488 9.821662 AAATAACTTCACTACATTTTTCGTAGC 57.178 29.630 0.00 0.00 40.03 3.58
502 503 9.603298 CCGTAACCTTTTCTAAAATAACTTCAC 57.397 33.333 0.00 0.00 0.00 3.18
503 504 9.558396 TCCGTAACCTTTTCTAAAATAACTTCA 57.442 29.630 0.00 0.00 0.00 3.02
513 514 9.558396 TCAGTTAAAATCCGTAACCTTTTCTAA 57.442 29.630 0.00 0.00 32.83 2.10
514 515 8.992073 GTCAGTTAAAATCCGTAACCTTTTCTA 58.008 33.333 0.00 0.00 32.83 2.10
515 516 7.499895 TGTCAGTTAAAATCCGTAACCTTTTCT 59.500 33.333 0.00 0.00 32.83 2.52
516 517 7.641760 TGTCAGTTAAAATCCGTAACCTTTTC 58.358 34.615 0.00 0.00 32.83 2.29
517 518 7.571080 TGTCAGTTAAAATCCGTAACCTTTT 57.429 32.000 0.00 0.00 32.83 2.27
518 519 7.420002 GTTGTCAGTTAAAATCCGTAACCTTT 58.580 34.615 0.00 0.00 32.83 3.11
519 520 6.016860 GGTTGTCAGTTAAAATCCGTAACCTT 60.017 38.462 0.00 0.00 32.83 3.50
520 521 5.471116 GGTTGTCAGTTAAAATCCGTAACCT 59.529 40.000 0.00 0.00 32.83 3.50
521 522 5.239087 TGGTTGTCAGTTAAAATCCGTAACC 59.761 40.000 0.00 0.00 32.83 2.85
522 523 6.303021 TGGTTGTCAGTTAAAATCCGTAAC 57.697 37.500 0.00 0.00 0.00 2.50
523 524 7.513371 AATGGTTGTCAGTTAAAATCCGTAA 57.487 32.000 0.00 0.00 0.00 3.18
524 525 6.128499 CGAATGGTTGTCAGTTAAAATCCGTA 60.128 38.462 0.00 0.00 0.00 4.02
525 526 5.334569 CGAATGGTTGTCAGTTAAAATCCGT 60.335 40.000 0.00 0.00 0.00 4.69
526 527 5.086058 CGAATGGTTGTCAGTTAAAATCCG 58.914 41.667 0.00 0.00 0.00 4.18
527 528 6.009115 ACGAATGGTTGTCAGTTAAAATCC 57.991 37.500 0.00 0.00 0.00 3.01
528 529 6.664515 TGACGAATGGTTGTCAGTTAAAATC 58.335 36.000 0.00 0.00 40.02 2.17
529 530 6.627395 TGACGAATGGTTGTCAGTTAAAAT 57.373 33.333 0.00 0.00 40.02 1.82
530 531 6.438259 TTGACGAATGGTTGTCAGTTAAAA 57.562 33.333 0.00 0.00 45.08 1.52
531 532 6.627395 ATTGACGAATGGTTGTCAGTTAAA 57.373 33.333 0.00 0.00 45.08 1.52
532 533 6.627395 AATTGACGAATGGTTGTCAGTTAA 57.373 33.333 3.72 0.00 45.08 2.01
533 534 7.731882 TTAATTGACGAATGGTTGTCAGTTA 57.268 32.000 7.57 7.57 45.08 2.24
534 535 6.627395 TTAATTGACGAATGGTTGTCAGTT 57.373 33.333 9.10 9.10 45.08 3.16
535 536 6.817765 ATTAATTGACGAATGGTTGTCAGT 57.182 33.333 0.00 0.00 45.08 3.41
536 537 8.450964 AGTAATTAATTGACGAATGGTTGTCAG 58.549 33.333 11.05 0.00 45.08 3.51
537 538 8.330466 AGTAATTAATTGACGAATGGTTGTCA 57.670 30.769 11.05 0.00 42.98 3.58
538 539 9.274065 GAAGTAATTAATTGACGAATGGTTGTC 57.726 33.333 11.05 0.00 35.67 3.18
539 540 9.010029 AGAAGTAATTAATTGACGAATGGTTGT 57.990 29.630 11.05 0.00 0.00 3.32
558 559 8.255905 GCTACTTAACCAATGGTCTAGAAGTAA 58.744 37.037 20.02 9.23 33.12 2.24
559 560 7.398047 TGCTACTTAACCAATGGTCTAGAAGTA 59.602 37.037 17.21 18.33 33.12 2.24
560 561 6.212791 TGCTACTTAACCAATGGTCTAGAAGT 59.787 38.462 19.05 19.05 33.12 3.01
561 562 6.640518 TGCTACTTAACCAATGGTCTAGAAG 58.359 40.000 17.21 14.50 33.12 2.85
562 563 6.614694 TGCTACTTAACCAATGGTCTAGAA 57.385 37.500 17.21 5.18 33.12 2.10
563 564 6.403878 GTTGCTACTTAACCAATGGTCTAGA 58.596 40.000 17.21 0.00 33.12 2.43
564 565 5.585047 GGTTGCTACTTAACCAATGGTCTAG 59.415 44.000 4.95 8.75 45.43 2.43
565 566 5.493809 GGTTGCTACTTAACCAATGGTCTA 58.506 41.667 4.95 0.00 45.43 2.59
566 567 4.332828 GGTTGCTACTTAACCAATGGTCT 58.667 43.478 4.95 0.00 45.43 3.85
567 568 4.696899 GGTTGCTACTTAACCAATGGTC 57.303 45.455 4.95 0.00 45.43 4.02
574 575 8.931775 CCAAATTTTAATGGTTGCTACTTAACC 58.068 33.333 0.00 0.00 46.13 2.85
575 576 8.931775 CCCAAATTTTAATGGTTGCTACTTAAC 58.068 33.333 0.00 0.00 34.79 2.01
576 577 8.097662 CCCCAAATTTTAATGGTTGCTACTTAA 58.902 33.333 0.00 0.00 34.79 1.85
577 578 7.616313 CCCCAAATTTTAATGGTTGCTACTTA 58.384 34.615 0.00 0.00 34.79 2.24
578 579 6.472016 CCCCAAATTTTAATGGTTGCTACTT 58.528 36.000 0.00 0.00 34.79 2.24
579 580 5.570641 GCCCCAAATTTTAATGGTTGCTACT 60.571 40.000 0.00 0.00 34.79 2.57
580 581 4.634004 GCCCCAAATTTTAATGGTTGCTAC 59.366 41.667 0.00 0.00 34.79 3.58
581 582 4.534103 AGCCCCAAATTTTAATGGTTGCTA 59.466 37.500 6.44 0.00 39.62 3.49
582 583 3.330405 AGCCCCAAATTTTAATGGTTGCT 59.670 39.130 0.00 0.00 37.79 3.91
583 584 3.684908 AGCCCCAAATTTTAATGGTTGC 58.315 40.909 0.00 0.00 34.79 4.17
584 585 7.936496 AATTAGCCCCAAATTTTAATGGTTG 57.064 32.000 0.00 0.00 34.79 3.77
585 586 9.845740 GATAATTAGCCCCAAATTTTAATGGTT 57.154 29.630 0.00 0.00 34.79 3.67
586 587 8.436778 GGATAATTAGCCCCAAATTTTAATGGT 58.563 33.333 8.67 0.00 34.79 3.55
587 588 8.659527 AGGATAATTAGCCCCAAATTTTAATGG 58.340 33.333 16.13 0.00 36.42 3.16
591 592 9.898152 CAAAAGGATAATTAGCCCCAAATTTTA 57.102 29.630 16.13 0.00 30.36 1.52
592 593 7.339212 GCAAAAGGATAATTAGCCCCAAATTTT 59.661 33.333 16.13 12.31 30.36 1.82
593 594 6.828273 GCAAAAGGATAATTAGCCCCAAATTT 59.172 34.615 16.13 7.07 30.36 1.82
594 595 6.356556 GCAAAAGGATAATTAGCCCCAAATT 58.643 36.000 16.13 0.84 30.36 1.82
595 596 5.163205 GGCAAAAGGATAATTAGCCCCAAAT 60.163 40.000 16.13 0.00 34.71 2.32
603 604 5.300286 CCACTGAGGGCAAAAGGATAATTAG 59.700 44.000 0.00 0.00 0.00 1.73
1126 1155 4.166523 CACACGTAGAACAGACGATTCAT 58.833 43.478 1.71 0.00 42.98 2.57
1127 1156 3.561503 CACACGTAGAACAGACGATTCA 58.438 45.455 1.71 0.00 42.98 2.57
1136 1166 0.663269 CTCGCTGCACACGTAGAACA 60.663 55.000 0.00 0.00 0.00 3.18
1159 1189 0.179029 ATTGCCCCGATTCTTACCCG 60.179 55.000 0.00 0.00 0.00 5.28
1230 1261 3.767673 AGAAGCATTTCACCTGCATGAAT 59.232 39.130 3.66 0.00 42.15 2.57
1257 1288 1.365633 GGCTAGAGCATCGACCCAG 59.634 63.158 3.54 0.00 44.36 4.45
1397 1428 6.859112 TCCTAAACTCAACATCTAGCTCTT 57.141 37.500 0.00 0.00 0.00 2.85
1406 1437 7.939039 TCTTCTTCAACATCCTAAACTCAACAT 59.061 33.333 0.00 0.00 0.00 2.71
1414 1445 9.284968 CCTAAACTTCTTCTTCAACATCCTAAA 57.715 33.333 0.00 0.00 0.00 1.85
1532 1563 8.931775 CCATAATTCATGCATTTCCATACAATG 58.068 33.333 0.00 0.00 35.12 2.82
1640 1672 1.817357 TGTCGGTCGCTTCTTCTCTA 58.183 50.000 0.00 0.00 0.00 2.43
1651 1686 8.662369 TTTTCAACATATTTAAATGTCGGTCG 57.338 30.769 11.05 0.00 39.16 4.79
1702 1739 8.611654 AGCTGCATTTCATTGATTAAAAGTTT 57.388 26.923 1.02 0.00 0.00 2.66
1710 1748 5.250235 CAGAGAGCTGCATTTCATTGATT 57.750 39.130 1.02 0.00 34.95 2.57
1755 1795 0.474854 TTGGCCCACAGAGGAACCTA 60.475 55.000 0.00 0.00 41.22 3.08
1813 1855 3.627237 GGGCCTAATTGGATGAAGTTGGA 60.627 47.826 0.84 0.00 38.35 3.53
1883 1927 7.496529 TCAGCATTATGATTTACTGCCTAAC 57.503 36.000 0.00 0.00 33.34 2.34
2154 2202 1.962807 TGTGCATTTTCCACCCTTCAG 59.037 47.619 0.00 0.00 32.30 3.02
2241 2290 2.032620 CCATCTGTCCTAGCGGTTACT 58.967 52.381 0.00 0.00 0.00 2.24
2291 2340 7.342769 ACATTCACGGTCTCACTATGTATAA 57.657 36.000 0.00 0.00 0.00 0.98
2334 2405 5.146010 TCAGTGCAAAACAAAGGAAAACT 57.854 34.783 0.00 0.00 0.00 2.66
2441 2520 7.176515 ACCAAGTCATGAACTAACATGCAAATA 59.823 33.333 0.00 0.00 44.79 1.40
2521 2601 9.319143 GTGTGTTGCATCTTATCTATCTAAGTT 57.681 33.333 0.00 0.00 31.85 2.66
2522 2602 7.928706 GGTGTGTTGCATCTTATCTATCTAAGT 59.071 37.037 0.00 0.00 31.85 2.24
2526 2606 5.163405 ACGGTGTGTTGCATCTTATCTATCT 60.163 40.000 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.