Multiple sequence alignment - TraesCS7D01G528700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G528700 chr7D 100.000 4401 0 0 1 4401 623544844 623540444 0.000000e+00 8128.0
1 TraesCS7D01G528700 chr7D 97.009 234 6 1 1 234 511544652 511544420 4.130000e-105 392.0
2 TraesCS7D01G528700 chr7D 95.197 229 8 3 1 229 566217804 566217579 4.190000e-95 359.0
3 TraesCS7D01G528700 chr7D 81.366 322 52 6 2358 2675 623554802 623554485 5.650000e-64 255.0
4 TraesCS7D01G528700 chr7D 79.926 269 53 1 1314 1581 623555798 623555530 3.470000e-46 196.0
5 TraesCS7D01G528700 chr7D 83.929 112 18 0 2183 2294 623554932 623554821 1.670000e-19 108.0
6 TraesCS7D01G528700 chr7A 89.345 3651 206 77 840 4401 719579612 719576056 0.000000e+00 4418.0
7 TraesCS7D01G528700 chr7A 81.677 322 51 6 2358 2675 719581836 719581519 1.210000e-65 261.0
8 TraesCS7D01G528700 chr7A 85.022 227 25 7 4121 4343 579788825 579789046 5.730000e-54 222.0
9 TraesCS7D01G528700 chr7A 79.926 269 51 2 1314 1581 719582827 719582561 1.250000e-45 195.0
10 TraesCS7D01G528700 chr7A 84.158 202 20 8 362 559 719580043 719579850 7.520000e-43 185.0
11 TraesCS7D01G528700 chr7B 86.529 3912 269 109 645 4401 721213054 721209246 0.000000e+00 4067.0
12 TraesCS7D01G528700 chr7B 83.333 228 27 8 4121 4343 2888193 2888414 2.680000e-47 200.0
13 TraesCS7D01G528700 chr3D 96.930 228 7 0 1 228 58393807 58394034 2.480000e-102 383.0
14 TraesCS7D01G528700 chr2D 96.943 229 6 1 1 229 181601452 181601679 2.480000e-102 383.0
15 TraesCS7D01G528700 chr2D 95.122 123 6 0 1 123 181600861 181600983 1.250000e-45 195.0
16 TraesCS7D01G528700 chr2D 100.000 31 0 0 118 148 181601238 181601268 1.710000e-04 58.4
17 TraesCS7D01G528700 chr2B 83.700 227 28 7 4121 4343 252084045 252084266 5.770000e-49 206.0
18 TraesCS7D01G528700 chr4D 91.667 108 4 4 122 228 4616007 4616110 1.280000e-30 145.0
19 TraesCS7D01G528700 chr4D 85.047 107 11 3 122 228 354994291 354994190 2.170000e-18 104.0
20 TraesCS7D01G528700 chr6D 88.406 69 6 2 160 228 389640045 389640111 1.010000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G528700 chr7D 623540444 623544844 4400 True 8128.000000 8128 100.0000 1 4401 1 chr7D.!!$R3 4400
1 TraesCS7D01G528700 chr7A 719576056 719582827 6771 True 1264.750000 4418 83.7765 362 4401 4 chr7A.!!$R1 4039
2 TraesCS7D01G528700 chr7B 721209246 721213054 3808 True 4067.000000 4067 86.5290 645 4401 1 chr7B.!!$R1 3756
3 TraesCS7D01G528700 chr2D 181600861 181601679 818 False 212.133333 383 97.3550 1 229 3 chr2D.!!$F1 228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.034059 AAGCGAGATAGAATGGCCGG 59.966 55.0 0.00 0.0 0.00 6.13 F
312 313 0.035439 CCAGGCCGTGGTTATCTTGT 60.035 55.0 11.85 0.0 42.17 3.16 F
702 3141 0.178068 GCCCCAGCGAAGTCATCTTA 59.822 55.0 0.00 0.0 33.64 2.10 F
882 3327 0.187117 AGATCTGATCTGCCCCTCGA 59.813 55.0 18.93 0.0 38.44 4.04 F
2122 5034 0.253044 ACACCCGCAAGTATCTGCAT 59.747 50.0 0.00 0.0 42.77 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1118 3968 0.626916 AGAAGAGTAGAGGAGCGGGT 59.373 55.000 0.00 0.0 0.0 5.28 R
1122 3972 0.666374 GGCGAGAAGAGTAGAGGAGC 59.334 60.000 0.00 0.0 0.0 4.70 R
2314 5299 0.035598 CACCCACACCGTCACCATAA 59.964 55.000 0.00 0.0 0.0 1.90 R
2820 5816 1.005394 GCGACGGGAGAGGACAAAA 60.005 57.895 0.00 0.0 0.0 2.44 R
3727 6813 0.036577 CAGACACAAGAGCTCCCTGG 60.037 60.000 10.93 5.4 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 7.055598 CACAGAACGTAGAAAAAGAAGTAACG 58.944 38.462 0.00 0.00 35.17 3.18
49 50 6.063272 CAGAACGTAGAAAAAGAAGTAACGC 58.937 40.000 0.00 0.00 32.42 4.84
50 51 4.979564 ACGTAGAAAAAGAAGTAACGCC 57.020 40.909 0.00 0.00 32.42 5.68
51 52 3.426525 ACGTAGAAAAAGAAGTAACGCCG 59.573 43.478 0.00 0.00 32.42 6.46
55 56 2.484742 AAAAGAAGTAACGCCGGGAT 57.515 45.000 2.18 0.00 0.00 3.85
57 58 0.611714 AAGAAGTAACGCCGGGATGT 59.388 50.000 2.18 0.00 0.00 3.06
58 59 0.611714 AGAAGTAACGCCGGGATGTT 59.388 50.000 2.18 4.14 0.00 2.71
59 60 1.002773 AGAAGTAACGCCGGGATGTTT 59.997 47.619 2.18 0.00 0.00 2.83
61 62 0.322322 AGTAACGCCGGGATGTTTGA 59.678 50.000 2.18 0.00 0.00 2.69
62 63 0.445043 GTAACGCCGGGATGTTTGAC 59.555 55.000 2.18 1.33 0.00 3.18
63 64 0.035036 TAACGCCGGGATGTTTGACA 59.965 50.000 2.18 0.00 0.00 3.58
64 65 1.234615 AACGCCGGGATGTTTGACAG 61.235 55.000 2.18 0.00 0.00 3.51
66 67 3.039202 GCCGGGATGTTTGACAGCG 62.039 63.158 2.18 0.00 34.89 5.18
67 68 1.375396 CCGGGATGTTTGACAGCGA 60.375 57.895 0.00 0.00 34.89 4.93
68 69 1.361668 CCGGGATGTTTGACAGCGAG 61.362 60.000 0.00 0.00 34.89 5.03
69 70 1.361668 CGGGATGTTTGACAGCGAGG 61.362 60.000 0.00 0.00 34.89 4.63
70 71 1.648467 GGGATGTTTGACAGCGAGGC 61.648 60.000 0.00 0.00 34.89 4.70
72 73 0.874390 GATGTTTGACAGCGAGGCAA 59.126 50.000 0.00 0.00 45.65 4.52
76 77 1.646540 TTGACAGCGAGGCAAAACG 59.353 52.632 0.00 0.00 43.93 3.60
77 78 2.387125 TTGACAGCGAGGCAAAACGC 62.387 55.000 0.00 0.00 43.93 4.84
83 84 3.077339 CGAGGCAAAACGCTCAAAG 57.923 52.632 0.00 0.00 41.91 2.77
87 88 0.854705 GGCAAAACGCTCAAAGCAAG 59.145 50.000 0.00 0.00 42.58 4.01
88 89 1.559831 GCAAAACGCTCAAAGCAAGT 58.440 45.000 0.00 0.00 42.58 3.16
89 90 2.542824 GGCAAAACGCTCAAAGCAAGTA 60.543 45.455 0.00 0.00 42.58 2.24
91 92 3.792124 GCAAAACGCTCAAAGCAAGTACT 60.792 43.478 0.00 0.00 42.58 2.73
92 93 4.553938 GCAAAACGCTCAAAGCAAGTACTA 60.554 41.667 0.00 0.00 42.58 1.82
93 94 5.507077 CAAAACGCTCAAAGCAAGTACTAA 58.493 37.500 0.00 0.00 42.58 2.24
95 96 2.737252 ACGCTCAAAGCAAGTACTAAGC 59.263 45.455 11.24 11.24 42.58 3.09
99 100 4.486090 CTCAAAGCAAGTACTAAGCGAGA 58.514 43.478 12.84 11.14 0.00 4.04
101 102 6.203808 TCAAAGCAAGTACTAAGCGAGATA 57.796 37.500 12.84 0.07 0.00 1.98
103 104 6.095021 TCAAAGCAAGTACTAAGCGAGATAGA 59.905 38.462 12.84 5.96 0.00 1.98
104 105 6.452494 AAGCAAGTACTAAGCGAGATAGAA 57.548 37.500 12.84 0.00 0.00 2.10
105 106 6.642707 AGCAAGTACTAAGCGAGATAGAAT 57.357 37.500 12.84 0.00 0.00 2.40
106 107 6.442952 AGCAAGTACTAAGCGAGATAGAATG 58.557 40.000 12.84 0.00 0.00 2.67
107 108 5.631512 GCAAGTACTAAGCGAGATAGAATGG 59.368 44.000 0.00 0.00 0.00 3.16
108 109 5.379732 AGTACTAAGCGAGATAGAATGGC 57.620 43.478 0.00 0.00 0.00 4.40
109 110 3.669251 ACTAAGCGAGATAGAATGGCC 57.331 47.619 0.00 0.00 0.00 5.36
110 111 2.029828 ACTAAGCGAGATAGAATGGCCG 60.030 50.000 0.00 0.00 0.00 6.13
111 112 0.034059 AAGCGAGATAGAATGGCCGG 59.966 55.000 0.00 0.00 0.00 6.13
112 113 0.827925 AGCGAGATAGAATGGCCGGA 60.828 55.000 5.05 0.00 0.00 5.14
114 115 0.038159 CGAGATAGAATGGCCGGACC 60.038 60.000 3.83 6.37 39.84 4.46
122 123 3.309582 TGGCCGGACCAGATTCTC 58.690 61.111 3.83 0.00 46.36 2.87
123 124 1.306141 TGGCCGGACCAGATTCTCT 60.306 57.895 3.83 0.00 46.36 3.10
124 125 0.909610 TGGCCGGACCAGATTCTCTT 60.910 55.000 3.83 0.00 46.36 2.85
126 127 1.694696 GGCCGGACCAGATTCTCTTAT 59.305 52.381 5.05 0.00 38.86 1.73
127 128 2.289133 GGCCGGACCAGATTCTCTTATC 60.289 54.545 5.05 0.00 38.86 1.75
128 129 2.630580 GCCGGACCAGATTCTCTTATCT 59.369 50.000 5.05 0.00 35.26 1.98
132 133 3.572255 GGACCAGATTCTCTTATCTCGCT 59.428 47.826 0.00 0.00 32.60 4.93
134 135 3.243704 ACCAGATTCTCTTATCTCGCTGC 60.244 47.826 0.00 0.00 32.60 5.25
135 136 3.005684 CCAGATTCTCTTATCTCGCTGCT 59.994 47.826 0.00 0.00 32.60 4.24
136 137 4.217334 CCAGATTCTCTTATCTCGCTGCTA 59.783 45.833 0.00 0.00 32.60 3.49
137 138 5.393124 CAGATTCTCTTATCTCGCTGCTAG 58.607 45.833 0.00 0.00 32.60 3.42
138 139 3.634568 TTCTCTTATCTCGCTGCTAGC 57.365 47.619 8.10 8.10 38.02 3.42
141 142 2.293122 CTCTTATCTCGCTGCTAGCTGT 59.707 50.000 21.03 5.35 39.60 4.40
142 143 2.690497 TCTTATCTCGCTGCTAGCTGTT 59.310 45.455 21.03 6.08 39.60 3.16
143 144 3.131223 TCTTATCTCGCTGCTAGCTGTTT 59.869 43.478 21.03 6.37 39.60 2.83
144 145 2.393271 ATCTCGCTGCTAGCTGTTTT 57.607 45.000 21.03 2.06 39.60 2.43
145 146 2.169832 TCTCGCTGCTAGCTGTTTTT 57.830 45.000 21.03 0.00 39.60 1.94
162 163 2.839486 TTTTCCTCTCGCATGACACT 57.161 45.000 0.00 0.00 0.00 3.55
163 164 3.953712 TTTTCCTCTCGCATGACACTA 57.046 42.857 0.00 0.00 0.00 2.74
164 165 4.471904 TTTTCCTCTCGCATGACACTAT 57.528 40.909 0.00 0.00 0.00 2.12
165 166 4.471904 TTTCCTCTCGCATGACACTATT 57.528 40.909 0.00 0.00 0.00 1.73
167 168 3.023832 TCCTCTCGCATGACACTATTCA 58.976 45.455 0.00 0.00 0.00 2.57
168 169 3.638627 TCCTCTCGCATGACACTATTCAT 59.361 43.478 0.00 0.00 36.62 2.57
170 171 5.048434 TCCTCTCGCATGACACTATTCATAG 60.048 44.000 0.00 0.00 34.29 2.23
171 172 4.550422 TCTCGCATGACACTATTCATAGC 58.450 43.478 0.00 0.00 34.29 2.97
172 173 3.308530 TCGCATGACACTATTCATAGCG 58.691 45.455 16.69 16.69 45.09 4.26
174 175 4.023536 TCGCATGACACTATTCATAGCGTA 60.024 41.667 19.54 10.62 44.63 4.42
175 176 4.859245 CGCATGACACTATTCATAGCGTAT 59.141 41.667 15.51 0.00 42.31 3.06
178 179 6.021390 GCATGACACTATTCATAGCGTATACG 60.021 42.308 20.87 20.87 37.13 3.06
179 180 6.549912 TGACACTATTCATAGCGTATACGT 57.450 37.500 25.04 14.69 42.22 3.57
180 181 6.368213 TGACACTATTCATAGCGTATACGTG 58.632 40.000 25.04 16.07 42.22 4.49
182 183 5.471116 ACACTATTCATAGCGTATACGTGGA 59.529 40.000 25.04 11.95 42.22 4.02
183 184 6.022208 CACTATTCATAGCGTATACGTGGAG 58.978 44.000 25.04 13.74 42.22 3.86
185 186 1.538512 TCATAGCGTATACGTGGAGCC 59.461 52.381 25.04 8.50 42.22 4.70
186 187 0.520404 ATAGCGTATACGTGGAGCCG 59.480 55.000 25.04 0.00 42.22 5.52
188 189 3.113745 CGTATACGTGGAGCCGGT 58.886 61.111 17.16 0.00 34.11 5.28
189 190 1.298863 CGTATACGTGGAGCCGGTG 60.299 63.158 17.16 0.00 34.11 4.94
190 191 1.066918 GTATACGTGGAGCCGGTGG 59.933 63.158 1.90 0.00 0.00 4.61
191 192 1.380246 TATACGTGGAGCCGGTGGT 60.380 57.895 1.90 0.00 0.00 4.16
212 213 2.203266 GCCTAGCACCCCAGCATC 60.203 66.667 0.00 0.00 36.85 3.91
214 215 2.074948 CCTAGCACCCCAGCATCCT 61.075 63.158 0.00 0.00 36.85 3.24
216 217 0.257039 CTAGCACCCCAGCATCCTTT 59.743 55.000 0.00 0.00 36.85 3.11
217 218 1.490490 CTAGCACCCCAGCATCCTTTA 59.510 52.381 0.00 0.00 36.85 1.85
218 219 0.929244 AGCACCCCAGCATCCTTTAT 59.071 50.000 0.00 0.00 36.85 1.40
219 220 2.135189 AGCACCCCAGCATCCTTTATA 58.865 47.619 0.00 0.00 36.85 0.98
220 221 2.513738 AGCACCCCAGCATCCTTTATAA 59.486 45.455 0.00 0.00 36.85 0.98
221 222 2.887152 GCACCCCAGCATCCTTTATAAG 59.113 50.000 0.00 0.00 0.00 1.73
222 223 6.525950 AGCACCCCAGCATCCTTTATAAGG 62.526 50.000 0.00 0.00 43.04 2.69
258 259 5.971895 TTTTTAGACGCCGTATGTATTCC 57.028 39.130 0.00 0.00 0.00 3.01
259 260 4.924305 TTTAGACGCCGTATGTATTCCT 57.076 40.909 0.00 0.00 0.00 3.36
260 261 4.924305 TTAGACGCCGTATGTATTCCTT 57.076 40.909 0.00 0.00 0.00 3.36
262 263 2.429610 AGACGCCGTATGTATTCCTTGT 59.570 45.455 0.00 0.00 0.00 3.16
263 264 2.793232 GACGCCGTATGTATTCCTTGTC 59.207 50.000 0.00 0.00 0.00 3.18
265 266 2.797087 CGCCGTATGTATTCCTTGTCGT 60.797 50.000 0.00 0.00 0.00 4.34
266 267 3.548616 CGCCGTATGTATTCCTTGTCGTA 60.549 47.826 0.00 0.00 0.00 3.43
267 268 3.979495 GCCGTATGTATTCCTTGTCGTAG 59.021 47.826 0.00 0.00 0.00 3.51
268 269 4.498682 GCCGTATGTATTCCTTGTCGTAGT 60.499 45.833 0.00 0.00 0.00 2.73
269 270 5.585390 CCGTATGTATTCCTTGTCGTAGTT 58.415 41.667 0.00 0.00 0.00 2.24
271 272 6.260377 CGTATGTATTCCTTGTCGTAGTTGA 58.740 40.000 0.00 0.00 0.00 3.18
272 273 6.195983 CGTATGTATTCCTTGTCGTAGTTGAC 59.804 42.308 0.00 0.00 39.37 3.18
287 288 6.774354 GTAGTTGACGGTTCTGATGTTAAA 57.226 37.500 0.00 0.00 0.00 1.52
288 289 7.360575 GTAGTTGACGGTTCTGATGTTAAAT 57.639 36.000 0.00 0.00 0.00 1.40
291 292 6.262273 AGTTGACGGTTCTGATGTTAAATGTT 59.738 34.615 0.00 0.00 0.00 2.71
292 293 6.236017 TGACGGTTCTGATGTTAAATGTTC 57.764 37.500 0.00 0.00 0.00 3.18
293 294 5.180492 TGACGGTTCTGATGTTAAATGTTCC 59.820 40.000 0.00 0.00 0.00 3.62
294 295 4.457949 ACGGTTCTGATGTTAAATGTTCCC 59.542 41.667 0.00 0.00 0.00 3.97
295 296 4.457603 CGGTTCTGATGTTAAATGTTCCCA 59.542 41.667 0.00 0.00 0.00 4.37
296 297 5.391950 CGGTTCTGATGTTAAATGTTCCCAG 60.392 44.000 0.00 0.00 0.00 4.45
297 298 5.105756 GGTTCTGATGTTAAATGTTCCCAGG 60.106 44.000 0.00 0.00 0.00 4.45
300 301 1.540267 TGTTAAATGTTCCCAGGCCG 58.460 50.000 0.00 0.00 0.00 6.13
302 303 1.201414 GTTAAATGTTCCCAGGCCGTG 59.799 52.381 0.00 0.00 0.00 4.94
304 305 2.366153 AAATGTTCCCAGGCCGTGGT 62.366 55.000 16.96 0.00 46.37 4.16
306 307 1.493854 ATGTTCCCAGGCCGTGGTTA 61.494 55.000 16.96 5.35 46.37 2.85
308 309 0.746923 GTTCCCAGGCCGTGGTTATC 60.747 60.000 16.96 4.30 46.37 1.75
310 311 0.912487 TCCCAGGCCGTGGTTATCTT 60.912 55.000 16.96 0.00 46.37 2.40
311 312 0.748005 CCCAGGCCGTGGTTATCTTG 60.748 60.000 16.96 0.00 46.37 3.02
312 313 0.035439 CCAGGCCGTGGTTATCTTGT 60.035 55.000 11.85 0.00 42.17 3.16
313 314 1.086696 CAGGCCGTGGTTATCTTGTG 58.913 55.000 0.00 0.00 0.00 3.33
314 315 0.981183 AGGCCGTGGTTATCTTGTGA 59.019 50.000 0.00 0.00 0.00 3.58
316 317 1.338769 GGCCGTGGTTATCTTGTGAGT 60.339 52.381 0.00 0.00 0.00 3.41
318 319 2.611971 GCCGTGGTTATCTTGTGAGTGA 60.612 50.000 0.00 0.00 0.00 3.41
319 320 3.254060 CCGTGGTTATCTTGTGAGTGAG 58.746 50.000 0.00 0.00 0.00 3.51
321 322 4.082408 CCGTGGTTATCTTGTGAGTGAGTA 60.082 45.833 0.00 0.00 0.00 2.59
323 324 5.335740 CGTGGTTATCTTGTGAGTGAGTACT 60.336 44.000 0.00 0.00 40.66 2.73
324 325 5.864474 GTGGTTATCTTGTGAGTGAGTACTG 59.136 44.000 0.00 0.00 37.25 2.74
328 329 5.921962 ATCTTGTGAGTGAGTACTGCATA 57.078 39.130 0.00 0.00 37.25 3.14
329 330 5.921962 TCTTGTGAGTGAGTACTGCATAT 57.078 39.130 0.00 0.00 37.25 1.78
330 331 6.286240 TCTTGTGAGTGAGTACTGCATATT 57.714 37.500 0.00 0.00 37.25 1.28
331 332 7.404671 TCTTGTGAGTGAGTACTGCATATTA 57.595 36.000 0.00 0.00 37.25 0.98
333 334 8.138074 TCTTGTGAGTGAGTACTGCATATTATC 58.862 37.037 0.00 0.00 37.25 1.75
334 335 7.346751 TGTGAGTGAGTACTGCATATTATCA 57.653 36.000 0.00 0.00 37.25 2.15
335 336 7.955918 TGTGAGTGAGTACTGCATATTATCAT 58.044 34.615 0.00 0.00 37.25 2.45
336 337 8.424133 TGTGAGTGAGTACTGCATATTATCATT 58.576 33.333 0.00 0.00 37.25 2.57
338 339 9.836864 TGAGTGAGTACTGCATATTATCATTTT 57.163 29.630 0.00 0.00 37.25 1.82
340 341 9.060347 AGTGAGTACTGCATATTATCATTTTGG 57.940 33.333 0.00 0.00 35.34 3.28
341 342 9.056005 GTGAGTACTGCATATTATCATTTTGGA 57.944 33.333 0.00 0.00 0.00 3.53
342 343 9.056005 TGAGTACTGCATATTATCATTTTGGAC 57.944 33.333 0.00 0.00 0.00 4.02
343 344 8.978874 AGTACTGCATATTATCATTTTGGACA 57.021 30.769 0.00 0.00 0.00 4.02
344 345 9.578576 AGTACTGCATATTATCATTTTGGACAT 57.421 29.630 0.00 0.00 0.00 3.06
345 346 9.831737 GTACTGCATATTATCATTTTGGACATC 57.168 33.333 0.00 0.00 0.00 3.06
347 348 6.912082 TGCATATTATCATTTTGGACATCCG 58.088 36.000 0.00 0.00 39.43 4.18
348 349 5.801947 GCATATTATCATTTTGGACATCCGC 59.198 40.000 0.00 0.00 39.43 5.54
349 350 6.570186 GCATATTATCATTTTGGACATCCGCA 60.570 38.462 0.00 0.00 39.43 5.69
350 351 5.850557 ATTATCATTTTGGACATCCGCAA 57.149 34.783 0.00 0.00 39.43 4.85
351 352 5.651387 TTATCATTTTGGACATCCGCAAA 57.349 34.783 0.00 0.00 39.43 3.68
352 353 4.533919 ATCATTTTGGACATCCGCAAAA 57.466 36.364 0.00 0.00 39.43 2.44
353 354 4.327982 TCATTTTGGACATCCGCAAAAA 57.672 36.364 0.00 0.27 39.43 1.94
387 2811 2.275318 GACAGTAACAGATGCTCCTGC 58.725 52.381 5.95 0.00 37.68 4.85
391 2815 3.755378 CAGTAACAGATGCTCCTGCTTTT 59.245 43.478 5.95 0.00 40.48 2.27
392 2816 4.006319 AGTAACAGATGCTCCTGCTTTTC 58.994 43.478 5.95 0.00 40.48 2.29
441 2865 6.238347 GGTTTGCTCGGTTGAAATTTGAAATT 60.238 34.615 0.00 0.00 0.00 1.82
447 2871 6.212955 TCGGTTGAAATTTGAAATTGAGACC 58.787 36.000 3.62 10.63 0.00 3.85
449 2873 6.212955 GGTTGAAATTTGAAATTGAGACCGA 58.787 36.000 3.62 0.00 0.00 4.69
450 2874 6.699642 GGTTGAAATTTGAAATTGAGACCGAA 59.300 34.615 3.62 0.00 0.00 4.30
451 2875 7.306574 GGTTGAAATTTGAAATTGAGACCGAAC 60.307 37.037 3.62 1.02 0.00 3.95
452 2876 7.038154 TGAAATTTGAAATTGAGACCGAACT 57.962 32.000 3.62 0.00 0.00 3.01
457 2881 7.562454 TTTGAAATTGAGACCGAACTAACTT 57.438 32.000 0.00 0.00 0.00 2.66
465 2889 7.647907 TGAGACCGAACTAACTTGTAATTTC 57.352 36.000 0.00 0.00 0.00 2.17
467 2891 6.218746 AGACCGAACTAACTTGTAATTTCGT 58.781 36.000 0.00 0.00 35.26 3.85
479 2903 6.976349 ACTTGTAATTTCGTTTTTCAGGGTTC 59.024 34.615 0.00 0.00 0.00 3.62
483 2907 7.650104 TGTAATTTCGTTTTTCAGGGTTCAATC 59.350 33.333 0.00 0.00 0.00 2.67
486 2913 2.550606 CGTTTTTCAGGGTTCAATCCGA 59.449 45.455 0.00 0.00 0.00 4.55
495 2922 3.053619 AGGGTTCAATCCGAGCCTATTTT 60.054 43.478 0.00 0.00 44.25 1.82
553 2980 1.969862 CGGTCCACGGTAAGTTCCT 59.030 57.895 0.00 0.00 39.42 3.36
554 2981 0.319405 CGGTCCACGGTAAGTTCCTT 59.681 55.000 0.00 0.00 39.42 3.36
555 2982 1.270465 CGGTCCACGGTAAGTTCCTTT 60.270 52.381 0.00 0.00 39.42 3.11
556 2983 2.807837 CGGTCCACGGTAAGTTCCTTTT 60.808 50.000 0.00 0.00 39.42 2.27
557 2984 3.216800 GGTCCACGGTAAGTTCCTTTTT 58.783 45.455 0.00 0.00 0.00 1.94
558 2985 3.251729 GGTCCACGGTAAGTTCCTTTTTC 59.748 47.826 0.00 0.00 0.00 2.29
559 2986 3.251729 GTCCACGGTAAGTTCCTTTTTCC 59.748 47.826 0.00 0.00 0.00 3.13
560 2987 3.117963 TCCACGGTAAGTTCCTTTTTCCA 60.118 43.478 0.00 0.00 0.00 3.53
561 2988 3.004002 CCACGGTAAGTTCCTTTTTCCAC 59.996 47.826 0.00 0.00 0.00 4.02
562 2989 3.881089 CACGGTAAGTTCCTTTTTCCACT 59.119 43.478 0.00 0.00 0.00 4.00
563 2990 4.337274 CACGGTAAGTTCCTTTTTCCACTT 59.663 41.667 0.00 0.00 33.95 3.16
564 2991 4.951715 ACGGTAAGTTCCTTTTTCCACTTT 59.048 37.500 0.00 0.00 31.83 2.66
565 2992 5.419788 ACGGTAAGTTCCTTTTTCCACTTTT 59.580 36.000 0.00 0.00 31.83 2.27
566 2993 5.746721 CGGTAAGTTCCTTTTTCCACTTTTG 59.253 40.000 0.00 0.00 31.83 2.44
567 2994 6.626402 CGGTAAGTTCCTTTTTCCACTTTTGT 60.626 38.462 0.00 0.00 31.83 2.83
568 2995 7.101054 GGTAAGTTCCTTTTTCCACTTTTGTT 58.899 34.615 0.00 0.00 31.83 2.83
569 2996 7.604927 GGTAAGTTCCTTTTTCCACTTTTGTTT 59.395 33.333 0.00 0.00 31.83 2.83
570 2997 7.433708 AAGTTCCTTTTTCCACTTTTGTTTG 57.566 32.000 0.00 0.00 0.00 2.93
571 2998 5.937540 AGTTCCTTTTTCCACTTTTGTTTGG 59.062 36.000 0.00 0.00 0.00 3.28
572 2999 4.837972 TCCTTTTTCCACTTTTGTTTGGG 58.162 39.130 0.00 0.00 33.25 4.12
573 3000 3.944650 CCTTTTTCCACTTTTGTTTGGGG 59.055 43.478 0.00 0.00 33.25 4.96
574 3001 2.700722 TTTCCACTTTTGTTTGGGGC 57.299 45.000 0.00 0.00 33.25 5.80
575 3002 1.573108 TTCCACTTTTGTTTGGGGCA 58.427 45.000 0.00 0.00 33.25 5.36
576 3003 1.573108 TCCACTTTTGTTTGGGGCAA 58.427 45.000 0.00 0.00 33.25 4.52
577 3004 1.208293 TCCACTTTTGTTTGGGGCAAC 59.792 47.619 0.00 0.00 33.25 4.17
578 3005 1.209261 CCACTTTTGTTTGGGGCAACT 59.791 47.619 0.00 0.00 0.00 3.16
591 3018 4.648651 TGGGGCAACTTTTTCTAGTCTAC 58.351 43.478 0.00 0.00 0.00 2.59
594 3021 3.124806 GGCAACTTTTTCTAGTCTACGGC 59.875 47.826 0.00 0.00 0.00 5.68
595 3022 3.744426 GCAACTTTTTCTAGTCTACGGCA 59.256 43.478 0.00 0.00 0.00 5.69
603 3030 2.496070 TCTAGTCTACGGCAAACATGCT 59.504 45.455 0.00 0.00 34.73 3.79
622 3049 5.284861 TGCTTAGGATTACCGCATTTCTA 57.715 39.130 0.00 0.00 41.83 2.10
623 3050 5.865085 TGCTTAGGATTACCGCATTTCTAT 58.135 37.500 0.00 0.00 41.83 1.98
625 3052 7.446769 TGCTTAGGATTACCGCATTTCTATAA 58.553 34.615 0.00 0.00 41.83 0.98
627 3054 8.228464 GCTTAGGATTACCGCATTTCTATAAAC 58.772 37.037 0.00 0.00 41.83 2.01
632 3059 9.575783 GGATTACCGCATTTCTATAAACAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
702 3141 0.178068 GCCCCAGCGAAGTCATCTTA 59.822 55.000 0.00 0.00 33.64 2.10
744 3186 2.304180 AGGGAAGTCAGTCATCTGGTTG 59.696 50.000 0.00 0.00 41.59 3.77
769 3211 2.054453 GGCCAGGCCCAGTCAAATC 61.054 63.158 21.62 0.00 44.06 2.17
776 3218 2.398554 CCCAGTCAAATCCCACGCG 61.399 63.158 3.53 3.53 0.00 6.01
799 3241 4.438346 CGAGGCCCAACGGAATAG 57.562 61.111 0.00 0.00 0.00 1.73
871 3313 4.380986 TGGACGGCCAGATCTGAT 57.619 55.556 24.62 6.38 39.92 2.90
882 3327 0.187117 AGATCTGATCTGCCCCTCGA 59.813 55.000 18.93 0.00 38.44 4.04
939 3386 3.771160 CCGGTCCTCCCCGTGAAG 61.771 72.222 0.00 0.00 46.66 3.02
953 3400 1.913262 TGAAGGAGCAGGGCGAAGA 60.913 57.895 0.00 0.00 0.00 2.87
954 3401 1.153469 GAAGGAGCAGGGCGAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
955 3402 2.585791 GAAGGAGCAGGGCGAAGAGG 62.586 65.000 0.00 0.00 0.00 3.69
956 3403 4.847444 GGAGCAGGGCGAAGAGGC 62.847 72.222 0.00 0.00 45.91 4.70
1086 3935 2.670592 TTCGCCGACTCCGTCAGA 60.671 61.111 0.00 0.00 32.09 3.27
1122 3972 3.083997 CCTTCCCTCCTCCACCCG 61.084 72.222 0.00 0.00 0.00 5.28
1129 3979 3.670629 CTCCTCCACCCGCTCCTCT 62.671 68.421 0.00 0.00 0.00 3.69
1132 3982 1.076632 CTCCACCCGCTCCTCTACT 60.077 63.158 0.00 0.00 0.00 2.57
1205 4067 3.856267 GCGGTTAACCTAGGATTAGAGCG 60.856 52.174 22.12 16.95 0.00 5.03
1228 4090 2.046314 GCAGCTCCCCGTTTGCTA 60.046 61.111 0.00 0.00 35.05 3.49
1262 4130 2.802816 GCCATCGCCTTCTTGTAGTATG 59.197 50.000 0.00 0.00 0.00 2.39
1341 4224 1.537202 GCGCAGGACTTTGTGAATTCT 59.463 47.619 0.30 0.00 0.00 2.40
1344 4227 3.120408 CGCAGGACTTTGTGAATTCTCTG 60.120 47.826 7.05 1.42 0.00 3.35
1467 4350 4.087892 CTGTGGGACTGGGAGGCG 62.088 72.222 0.00 0.00 0.00 5.52
1615 4498 1.864711 CGCACATACACCCTTAATCGG 59.135 52.381 0.00 0.00 0.00 4.18
1618 4501 1.202604 ACATACACCCTTAATCGGCGG 60.203 52.381 7.21 0.00 0.00 6.13
1646 4529 2.160219 CCGTCCATGTTCATCTTGTGTG 59.840 50.000 0.00 0.00 0.00 3.82
1678 4567 0.950555 TTGCTCACGCTGTCATGGTC 60.951 55.000 0.00 0.00 36.97 4.02
1860 4749 0.860533 GTGTGGCGCGTAAGTTGTTA 59.139 50.000 8.43 0.00 41.68 2.41
1889 4797 5.414454 TGCAGCTACTTTCATTCGGTAATTT 59.586 36.000 0.00 0.00 0.00 1.82
1894 4802 8.021396 AGCTACTTTCATTCGGTAATTTTTGTC 58.979 33.333 0.00 0.00 0.00 3.18
1976 4888 0.392327 GAAGCAGTCCAAGGAGCTCC 60.392 60.000 26.22 26.22 36.07 4.70
1993 4905 3.850173 AGCTCCTTAAAGTTGGGGTGATA 59.150 43.478 0.00 0.00 0.00 2.15
2035 4947 0.541863 CCCTTGACCTCTACGCCATT 59.458 55.000 0.00 0.00 0.00 3.16
2093 5005 1.667724 CTGGATCCGATGAGTTTGTGC 59.332 52.381 7.39 0.00 0.00 4.57
2122 5034 0.253044 ACACCCGCAAGTATCTGCAT 59.747 50.000 0.00 0.00 42.77 3.96
2170 5082 1.452108 CTGCCCTCCGGGTTTGATC 60.452 63.158 0.00 0.00 46.51 2.92
2314 5299 0.783850 AGGTTGGTGTAATGCCCCTT 59.216 50.000 0.00 0.00 0.00 3.95
2316 5301 2.380590 AGGTTGGTGTAATGCCCCTTTA 59.619 45.455 0.00 0.00 0.00 1.85
2477 5462 3.346315 TCAGACTGTGGCCATGTATTTG 58.654 45.455 9.72 10.66 0.00 2.32
2499 5484 2.059756 TGGAGAAAGAAGGATGGGGT 57.940 50.000 0.00 0.00 0.00 4.95
2644 5629 0.324943 ACCCCTCCACGATTGACTTG 59.675 55.000 0.00 0.00 0.00 3.16
2664 5649 4.982241 TGGATGAGGTTTGTTCTCTTCT 57.018 40.909 0.00 0.00 36.37 2.85
2668 5653 5.532779 GGATGAGGTTTGTTCTCTTCTGTTT 59.467 40.000 0.00 0.00 36.37 2.83
2731 5724 8.662781 TCTTCCATGCATAACTTGTTAGATAC 57.337 34.615 0.00 0.00 0.00 2.24
2788 5781 6.358030 GCGTTTATGCATAGCACTTATTGAAG 59.642 38.462 6.50 0.00 43.04 3.02
2795 5788 7.259882 TGCATAGCACTTATTGAAGGAATTTG 58.740 34.615 0.00 0.00 36.95 2.32
2820 5816 9.835389 TGTTTTCATTTCTGAGAAATGGAAAAT 57.165 25.926 37.07 11.42 43.07 1.82
2833 5829 5.745312 AATGGAAAATTTTGTCCTCTCCC 57.255 39.130 8.47 1.19 34.77 4.30
2834 5830 3.153919 TGGAAAATTTTGTCCTCTCCCG 58.846 45.455 8.47 0.00 34.77 5.14
2911 5907 5.220719 CCATATGCTGGCATAATGACATACG 60.221 44.000 17.44 0.00 41.53 3.06
2927 5928 2.260844 TACGTGCTATACTAGGCGGT 57.739 50.000 0.00 0.00 0.00 5.68
2944 5945 0.603065 GGTGTTCCATTTGGTCCAGC 59.397 55.000 0.00 1.34 36.34 4.85
2950 5951 1.207089 TCCATTTGGTCCAGCGTCTAG 59.793 52.381 0.00 0.00 36.34 2.43
2991 5992 4.850680 ACTTTCACCAGAGGTTTGTTGTA 58.149 39.130 0.00 0.00 31.02 2.41
2992 5993 5.258051 ACTTTCACCAGAGGTTTGTTGTAA 58.742 37.500 0.00 0.00 31.02 2.41
2993 5994 5.124936 ACTTTCACCAGAGGTTTGTTGTAAC 59.875 40.000 0.00 0.00 31.02 2.50
2994 5995 4.223556 TCACCAGAGGTTTGTTGTAACA 57.776 40.909 0.00 0.00 31.02 2.41
2995 5996 4.787551 TCACCAGAGGTTTGTTGTAACAT 58.212 39.130 0.00 0.00 34.11 2.71
3032 6033 1.990799 TCCACAAGTCGTATCTTGCG 58.009 50.000 14.00 7.71 45.86 4.85
3130 6148 8.884124 TCTACCTTTTGATTTTGATGAAGGAT 57.116 30.769 6.92 0.00 37.62 3.24
3133 6151 8.142485 ACCTTTTGATTTTGATGAAGGATGAT 57.858 30.769 6.92 0.00 37.62 2.45
3136 6154 9.302345 CTTTTGATTTTGATGAAGGATGATGAG 57.698 33.333 0.00 0.00 0.00 2.90
3205 6223 5.424757 TCGGACTTGATGGACGATTTTATT 58.575 37.500 0.00 0.00 0.00 1.40
3307 6337 2.288702 CGATGAGGAAGGCGATGAAGAT 60.289 50.000 0.00 0.00 0.00 2.40
3309 6339 1.224965 GAGGAAGGCGATGAAGATGC 58.775 55.000 0.00 0.00 0.00 3.91
3328 6358 2.105128 GATGAGGAGGGCGTGACG 59.895 66.667 0.00 0.00 0.00 4.35
3329 6359 2.362503 ATGAGGAGGGCGTGACGA 60.363 61.111 10.10 0.00 0.00 4.20
3365 6398 1.654954 CGATGAAGACGACGAGGGGT 61.655 60.000 0.00 0.00 0.00 4.95
3483 6530 4.775058 ATAGCTCTCTTGTACATAGGCG 57.225 45.455 0.00 0.00 0.00 5.52
3502 6549 2.346597 CTCTCCGGTCCAGGATAGC 58.653 63.158 0.00 0.00 39.96 2.97
3543 6596 3.574826 GTGTAAATGTTTGCTGGGGGTAA 59.425 43.478 0.00 0.00 0.00 2.85
3554 6607 2.501316 GCTGGGGGTAAAAATGCATTCT 59.499 45.455 13.38 5.81 0.00 2.40
3573 6626 9.494271 TGCATTCTTCTGATACTATGGTTTATC 57.506 33.333 0.00 0.00 0.00 1.75
3628 6681 2.128347 GATGAAATCGAGCGCGCG 60.128 61.111 28.01 28.01 37.46 6.86
3629 6682 2.860628 GATGAAATCGAGCGCGCGT 61.861 57.895 31.60 18.26 37.46 6.01
3630 6683 2.348140 GATGAAATCGAGCGCGCGTT 62.348 55.000 31.60 27.63 37.46 4.84
3631 6684 1.966493 ATGAAATCGAGCGCGCGTTT 61.966 50.000 31.60 27.46 37.46 3.60
3632 6685 1.509162 GAAATCGAGCGCGCGTTTT 60.509 52.632 32.45 32.45 36.30 2.43
3648 6723 1.941975 GTTTTCCCGGTCTCGTTTGAA 59.058 47.619 0.00 0.00 33.95 2.69
3651 6726 0.970640 TCCCGGTCTCGTTTGAATCA 59.029 50.000 0.00 0.00 33.95 2.57
3652 6727 1.553248 TCCCGGTCTCGTTTGAATCAT 59.447 47.619 0.00 0.00 33.95 2.45
3653 6728 1.665679 CCCGGTCTCGTTTGAATCATG 59.334 52.381 0.00 0.00 33.95 3.07
3656 6731 2.736721 CGGTCTCGTTTGAATCATGTGT 59.263 45.455 0.00 0.00 0.00 3.72
3662 6737 7.360861 GGTCTCGTTTGAATCATGTGTATTTCA 60.361 37.037 0.00 0.00 0.00 2.69
3699 6780 4.635765 CGGTTTGGTGATAACTGATGACAT 59.364 41.667 0.00 0.00 34.50 3.06
3738 6824 1.692121 CCAGATTCTCCAGGGAGCTCT 60.692 57.143 14.64 11.42 41.71 4.09
3743 6829 0.178921 TCTCCAGGGAGCTCTTGTGT 60.179 55.000 14.64 0.00 41.71 3.72
3744 6830 0.248843 CTCCAGGGAGCTCTTGTGTC 59.751 60.000 14.64 0.00 35.31 3.67
3747 6833 0.683973 CAGGGAGCTCTTGTGTCTGT 59.316 55.000 14.64 0.00 0.00 3.41
3750 6836 1.337635 GGGAGCTCTTGTGTCTGTCTG 60.338 57.143 14.64 0.00 0.00 3.51
3751 6837 1.342819 GGAGCTCTTGTGTCTGTCTGT 59.657 52.381 14.64 0.00 0.00 3.41
3753 6839 2.034878 AGCTCTTGTGTCTGTCTGTGA 58.965 47.619 0.00 0.00 0.00 3.58
3754 6840 2.131183 GCTCTTGTGTCTGTCTGTGAC 58.869 52.381 0.00 0.00 35.21 3.67
3755 6841 2.748605 CTCTTGTGTCTGTCTGTGACC 58.251 52.381 0.00 0.00 33.83 4.02
3756 6842 1.067060 TCTTGTGTCTGTCTGTGACCG 59.933 52.381 0.00 0.00 33.83 4.79
3757 6843 1.067060 CTTGTGTCTGTCTGTGACCGA 59.933 52.381 0.00 0.00 33.83 4.69
3758 6844 0.668535 TGTGTCTGTCTGTGACCGAG 59.331 55.000 0.00 0.00 33.83 4.63
3759 6845 0.664767 GTGTCTGTCTGTGACCGAGC 60.665 60.000 0.00 0.00 33.83 5.03
3760 6846 0.823769 TGTCTGTCTGTGACCGAGCT 60.824 55.000 0.00 0.00 33.83 4.09
3761 6847 0.315568 GTCTGTCTGTGACCGAGCTT 59.684 55.000 0.00 0.00 0.00 3.74
3762 6848 0.315251 TCTGTCTGTGACCGAGCTTG 59.685 55.000 0.00 0.00 0.00 4.01
3782 6868 0.805322 CTGAGGCTGACATCTCACGC 60.805 60.000 0.00 0.00 35.37 5.34
3829 6915 2.046314 ATCCTCACCCCAAACGCG 60.046 61.111 3.53 3.53 0.00 6.01
4076 7178 1.210931 CCCGTGCGTCTCGTTTCTA 59.789 57.895 0.00 0.00 0.00 2.10
4081 7183 0.596577 TGCGTCTCGTTTCTACTGCT 59.403 50.000 0.00 0.00 0.00 4.24
4254 7371 3.751246 CCAAGGTACGGACGGCGA 61.751 66.667 16.62 0.00 0.00 5.54
4292 7409 3.626924 GGCCCCCGATATCGCACT 61.627 66.667 19.78 0.00 38.18 4.40
4294 7411 2.258591 CCCCCGATATCGCACTCG 59.741 66.667 19.78 5.51 38.18 4.18
4353 7474 2.159894 CGTTTGCTCGTTCGATTTAGCA 60.160 45.455 10.89 10.89 42.91 3.49
4355 7476 3.656651 TTGCTCGTTCGATTTAGCATG 57.343 42.857 14.46 0.00 43.94 4.06
4357 7478 1.594862 GCTCGTTCGATTTAGCATGCT 59.405 47.619 25.99 25.99 35.05 3.79
4380 7501 0.460987 CGCTGTTGGATCAGACTCCC 60.461 60.000 0.00 0.00 37.61 4.30
4389 7510 0.106819 ATCAGACTCCCATGCCTTGC 60.107 55.000 0.00 0.00 0.00 4.01
4395 7516 3.197790 CCCATGCCTTGCGTCTCG 61.198 66.667 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.877691 GCTGTCAAACATCCCGGC 59.122 61.111 0.00 0.00 0.00 6.13
49 50 1.361668 CTCGCTGTCAAACATCCCGG 61.362 60.000 0.00 0.00 0.00 5.73
50 51 1.361668 CCTCGCTGTCAAACATCCCG 61.362 60.000 0.00 0.00 0.00 5.14
51 52 1.648467 GCCTCGCTGTCAAACATCCC 61.648 60.000 0.00 0.00 0.00 3.85
55 56 1.098869 TTTTGCCTCGCTGTCAAACA 58.901 45.000 0.00 0.00 30.45 2.83
57 58 0.028770 CGTTTTGCCTCGCTGTCAAA 59.971 50.000 0.00 0.00 0.00 2.69
58 59 1.646540 CGTTTTGCCTCGCTGTCAA 59.353 52.632 0.00 0.00 0.00 3.18
59 60 3.329231 CGTTTTGCCTCGCTGTCA 58.671 55.556 0.00 0.00 0.00 3.58
66 67 0.030638 TGCTTTGAGCGTTTTGCCTC 59.969 50.000 0.00 0.00 46.26 4.70
67 68 0.459489 TTGCTTTGAGCGTTTTGCCT 59.541 45.000 0.00 0.00 46.26 4.75
68 69 0.854705 CTTGCTTTGAGCGTTTTGCC 59.145 50.000 0.00 0.00 46.26 4.52
69 70 1.559831 ACTTGCTTTGAGCGTTTTGC 58.440 45.000 0.00 0.00 46.26 3.68
70 71 3.952535 AGTACTTGCTTTGAGCGTTTTG 58.047 40.909 0.00 0.00 46.26 2.44
72 73 4.319549 GCTTAGTACTTGCTTTGAGCGTTT 60.320 41.667 0.00 0.00 46.26 3.60
74 75 2.737252 GCTTAGTACTTGCTTTGAGCGT 59.263 45.455 0.00 0.00 46.26 5.07
76 77 2.993899 TCGCTTAGTACTTGCTTTGAGC 59.006 45.455 0.00 0.00 42.82 4.26
77 78 4.486090 TCTCGCTTAGTACTTGCTTTGAG 58.514 43.478 0.00 8.72 0.00 3.02
78 79 4.514781 TCTCGCTTAGTACTTGCTTTGA 57.485 40.909 0.00 2.51 0.00 2.69
79 80 6.266323 TCTATCTCGCTTAGTACTTGCTTTG 58.734 40.000 0.00 0.29 0.00 2.77
80 81 6.452494 TCTATCTCGCTTAGTACTTGCTTT 57.548 37.500 0.00 0.00 0.00 3.51
81 82 6.452494 TTCTATCTCGCTTAGTACTTGCTT 57.548 37.500 0.00 0.00 0.00 3.91
82 83 6.442952 CATTCTATCTCGCTTAGTACTTGCT 58.557 40.000 0.00 0.00 0.00 3.91
83 84 5.631512 CCATTCTATCTCGCTTAGTACTTGC 59.368 44.000 0.00 5.57 0.00 4.01
87 88 4.487019 GGCCATTCTATCTCGCTTAGTAC 58.513 47.826 0.00 0.00 0.00 2.73
88 89 3.190744 CGGCCATTCTATCTCGCTTAGTA 59.809 47.826 2.24 0.00 0.00 1.82
89 90 2.029828 CGGCCATTCTATCTCGCTTAGT 60.030 50.000 2.24 0.00 0.00 2.24
91 92 1.272490 CCGGCCATTCTATCTCGCTTA 59.728 52.381 2.24 0.00 0.00 3.09
92 93 0.034059 CCGGCCATTCTATCTCGCTT 59.966 55.000 2.24 0.00 0.00 4.68
93 94 0.827925 TCCGGCCATTCTATCTCGCT 60.828 55.000 2.24 0.00 0.00 4.93
95 96 0.038159 GGTCCGGCCATTCTATCTCG 60.038 60.000 2.24 0.00 37.17 4.04
105 106 3.309582 GAGAATCTGGTCCGGCCA 58.690 61.111 15.52 15.52 46.95 5.36
116 117 4.165779 GCTAGCAGCGAGATAAGAGAATC 58.834 47.826 10.63 0.00 0.00 2.52
118 119 3.634568 GCTAGCAGCGAGATAAGAGAA 57.365 47.619 10.63 0.00 0.00 2.87
142 143 3.126001 AGTGTCATGCGAGAGGAAAAA 57.874 42.857 0.00 0.00 32.68 1.94
143 144 2.839486 AGTGTCATGCGAGAGGAAAA 57.161 45.000 0.00 0.00 32.68 2.29
144 145 4.081697 TGAATAGTGTCATGCGAGAGGAAA 60.082 41.667 0.00 0.00 32.68 3.13
145 146 3.447229 TGAATAGTGTCATGCGAGAGGAA 59.553 43.478 0.00 0.00 32.68 3.36
146 147 3.023832 TGAATAGTGTCATGCGAGAGGA 58.976 45.455 0.00 0.00 0.00 3.71
147 148 3.443099 TGAATAGTGTCATGCGAGAGG 57.557 47.619 0.00 0.00 0.00 3.69
148 149 4.620609 GCTATGAATAGTGTCATGCGAGAG 59.379 45.833 0.00 0.00 38.69 3.20
149 150 4.550422 GCTATGAATAGTGTCATGCGAGA 58.450 43.478 0.00 0.00 38.69 4.04
150 151 3.363128 CGCTATGAATAGTGTCATGCGAG 59.637 47.826 18.47 3.74 46.54 5.03
151 152 3.308530 CGCTATGAATAGTGTCATGCGA 58.691 45.455 18.47 0.00 46.54 5.10
152 153 3.695005 CGCTATGAATAGTGTCATGCG 57.305 47.619 13.42 13.42 42.84 4.73
159 160 5.934921 TCCACGTATACGCTATGAATAGTG 58.065 41.667 24.64 11.07 44.34 2.74
160 161 5.391736 GCTCCACGTATACGCTATGAATAGT 60.392 44.000 24.64 0.00 44.43 2.12
162 163 4.142534 GGCTCCACGTATACGCTATGAATA 60.143 45.833 24.64 4.93 44.43 1.75
163 164 3.367087 GGCTCCACGTATACGCTATGAAT 60.367 47.826 24.64 0.54 44.43 2.57
164 165 2.030540 GGCTCCACGTATACGCTATGAA 60.031 50.000 24.64 0.00 44.43 2.57
165 166 1.538512 GGCTCCACGTATACGCTATGA 59.461 52.381 24.64 14.19 44.43 2.15
167 168 0.520404 CGGCTCCACGTATACGCTAT 59.480 55.000 24.64 2.91 44.43 2.97
168 169 1.509644 CCGGCTCCACGTATACGCTA 61.510 60.000 24.64 9.60 44.43 4.26
170 171 2.354305 CCGGCTCCACGTATACGC 60.354 66.667 24.64 8.11 44.43 4.42
171 172 1.298863 CACCGGCTCCACGTATACG 60.299 63.158 23.24 23.24 46.33 3.06
172 173 1.066918 CCACCGGCTCCACGTATAC 59.933 63.158 0.00 0.00 0.00 1.47
174 175 2.288025 AACCACCGGCTCCACGTAT 61.288 57.895 0.00 0.00 0.00 3.06
175 176 2.918802 AACCACCGGCTCCACGTA 60.919 61.111 0.00 0.00 0.00 3.57
194 195 4.181010 ATGCTGGGGTGCTAGGCG 62.181 66.667 0.00 0.00 0.00 5.52
195 196 2.203266 GATGCTGGGGTGCTAGGC 60.203 66.667 0.00 0.00 0.00 3.93
196 197 1.639635 AAGGATGCTGGGGTGCTAGG 61.640 60.000 0.00 0.00 0.00 3.02
197 198 0.257039 AAAGGATGCTGGGGTGCTAG 59.743 55.000 0.00 0.00 0.00 3.42
198 199 1.590591 TAAAGGATGCTGGGGTGCTA 58.409 50.000 0.00 0.00 0.00 3.49
199 200 0.929244 ATAAAGGATGCTGGGGTGCT 59.071 50.000 0.00 0.00 0.00 4.40
200 201 2.656947 TATAAAGGATGCTGGGGTGC 57.343 50.000 0.00 0.00 0.00 5.01
236 237 5.663456 AGGAATACATACGGCGTCTAAAAA 58.337 37.500 19.21 0.00 0.00 1.94
237 238 5.266733 AGGAATACATACGGCGTCTAAAA 57.733 39.130 19.21 0.00 0.00 1.52
238 239 4.924305 AGGAATACATACGGCGTCTAAA 57.076 40.909 19.21 0.00 0.00 1.85
240 241 3.633525 ACAAGGAATACATACGGCGTCTA 59.366 43.478 19.21 0.00 0.00 2.59
241 242 2.429610 ACAAGGAATACATACGGCGTCT 59.570 45.455 19.21 3.00 0.00 4.18
242 243 2.793232 GACAAGGAATACATACGGCGTC 59.207 50.000 19.21 0.00 0.00 5.19
243 244 2.797087 CGACAAGGAATACATACGGCGT 60.797 50.000 19.64 19.64 0.00 5.68
244 245 1.784856 CGACAAGGAATACATACGGCG 59.215 52.381 4.80 4.80 0.00 6.46
245 246 2.817901 ACGACAAGGAATACATACGGC 58.182 47.619 0.00 0.00 0.00 5.68
247 248 6.195983 GTCAACTACGACAAGGAATACATACG 59.804 42.308 0.00 0.00 35.88 3.06
265 266 6.932400 ACATTTAACATCAGAACCGTCAACTA 59.068 34.615 0.00 0.00 0.00 2.24
266 267 5.763204 ACATTTAACATCAGAACCGTCAACT 59.237 36.000 0.00 0.00 0.00 3.16
267 268 5.997385 ACATTTAACATCAGAACCGTCAAC 58.003 37.500 0.00 0.00 0.00 3.18
268 269 6.293735 GGAACATTTAACATCAGAACCGTCAA 60.294 38.462 0.00 0.00 0.00 3.18
269 270 5.180492 GGAACATTTAACATCAGAACCGTCA 59.820 40.000 0.00 0.00 0.00 4.35
271 272 4.457949 GGGAACATTTAACATCAGAACCGT 59.542 41.667 0.00 0.00 0.00 4.83
272 273 4.457603 TGGGAACATTTAACATCAGAACCG 59.542 41.667 0.00 0.00 33.40 4.44
273 274 5.105756 CCTGGGAACATTTAACATCAGAACC 60.106 44.000 0.00 0.00 41.51 3.62
274 275 5.622233 GCCTGGGAACATTTAACATCAGAAC 60.622 44.000 0.00 0.00 41.51 3.01
275 276 4.462483 GCCTGGGAACATTTAACATCAGAA 59.538 41.667 0.00 0.00 41.51 3.02
276 277 4.016444 GCCTGGGAACATTTAACATCAGA 58.984 43.478 0.00 0.00 41.51 3.27
278 279 3.096092 GGCCTGGGAACATTTAACATCA 58.904 45.455 0.00 0.00 41.51 3.07
281 282 1.202952 ACGGCCTGGGAACATTTAACA 60.203 47.619 0.00 0.00 41.51 2.41
282 283 1.201414 CACGGCCTGGGAACATTTAAC 59.799 52.381 0.00 0.00 41.51 2.01
283 284 1.540267 CACGGCCTGGGAACATTTAA 58.460 50.000 0.00 0.00 41.51 1.52
284 285 0.322997 CCACGGCCTGGGAACATTTA 60.323 55.000 12.13 0.00 41.51 1.40
285 286 1.606313 CCACGGCCTGGGAACATTT 60.606 57.895 12.13 0.00 41.51 2.32
286 287 2.035626 CCACGGCCTGGGAACATT 59.964 61.111 12.13 0.00 41.51 2.71
287 288 1.493854 TAACCACGGCCTGGGAACAT 61.494 55.000 20.97 7.96 45.78 2.71
288 289 1.493854 ATAACCACGGCCTGGGAACA 61.494 55.000 20.97 7.24 45.78 3.18
291 292 0.912487 AAGATAACCACGGCCTGGGA 60.912 55.000 20.97 11.57 45.78 4.37
292 293 0.748005 CAAGATAACCACGGCCTGGG 60.748 60.000 20.97 15.29 45.78 4.45
294 295 1.086696 CACAAGATAACCACGGCCTG 58.913 55.000 0.00 0.00 0.00 4.85
295 296 0.981183 TCACAAGATAACCACGGCCT 59.019 50.000 0.00 0.00 0.00 5.19
296 297 1.338769 ACTCACAAGATAACCACGGCC 60.339 52.381 0.00 0.00 0.00 6.13
297 298 1.732259 CACTCACAAGATAACCACGGC 59.268 52.381 0.00 0.00 0.00 5.68
300 301 5.864474 CAGTACTCACTCACAAGATAACCAC 59.136 44.000 0.00 0.00 30.46 4.16
302 303 4.865365 GCAGTACTCACTCACAAGATAACC 59.135 45.833 0.00 0.00 30.46 2.85
303 304 5.470368 TGCAGTACTCACTCACAAGATAAC 58.530 41.667 0.00 0.00 30.46 1.89
304 305 5.722021 TGCAGTACTCACTCACAAGATAA 57.278 39.130 0.00 0.00 30.46 1.75
306 307 4.815533 ATGCAGTACTCACTCACAAGAT 57.184 40.909 0.00 0.00 30.46 2.40
308 309 7.922811 TGATAATATGCAGTACTCACTCACAAG 59.077 37.037 0.00 0.00 30.46 3.16
310 311 7.346751 TGATAATATGCAGTACTCACTCACA 57.653 36.000 0.00 0.00 30.46 3.58
311 312 8.824159 AATGATAATATGCAGTACTCACTCAC 57.176 34.615 0.00 0.00 30.46 3.51
312 313 9.836864 AAAATGATAATATGCAGTACTCACTCA 57.163 29.630 0.00 0.00 30.46 3.41
314 315 9.060347 CCAAAATGATAATATGCAGTACTCACT 57.940 33.333 0.00 0.00 34.42 3.41
316 317 9.056005 GTCCAAAATGATAATATGCAGTACTCA 57.944 33.333 0.00 0.00 0.00 3.41
318 319 8.978874 TGTCCAAAATGATAATATGCAGTACT 57.021 30.769 0.00 0.00 0.00 2.73
319 320 9.831737 GATGTCCAAAATGATAATATGCAGTAC 57.168 33.333 0.00 0.00 0.00 2.73
321 322 7.308770 CGGATGTCCAAAATGATAATATGCAGT 60.309 37.037 0.00 0.00 35.14 4.40
323 324 6.570186 GCGGATGTCCAAAATGATAATATGCA 60.570 38.462 0.00 0.00 35.14 3.96
324 325 5.801947 GCGGATGTCCAAAATGATAATATGC 59.198 40.000 0.00 0.00 35.14 3.14
328 329 5.850557 TTGCGGATGTCCAAAATGATAAT 57.149 34.783 0.00 0.00 35.14 1.28
329 330 5.651387 TTTGCGGATGTCCAAAATGATAA 57.349 34.783 0.00 0.00 35.14 1.75
330 331 5.651387 TTTTGCGGATGTCCAAAATGATA 57.349 34.783 0.00 0.00 36.38 2.15
331 332 4.533919 TTTTGCGGATGTCCAAAATGAT 57.466 36.364 0.00 0.00 36.38 2.45
356 357 8.806146 AGCATCTGTTACTGTCCAAAATAATTT 58.194 29.630 0.00 0.00 0.00 1.82
357 358 8.353423 AGCATCTGTTACTGTCCAAAATAATT 57.647 30.769 0.00 0.00 0.00 1.40
358 359 7.067494 GGAGCATCTGTTACTGTCCAAAATAAT 59.933 37.037 0.00 0.00 33.73 1.28
361 362 4.702131 GGAGCATCTGTTACTGTCCAAAAT 59.298 41.667 0.00 0.00 33.73 1.82
362 363 4.072131 GGAGCATCTGTTACTGTCCAAAA 58.928 43.478 0.00 0.00 33.73 2.44
364 365 2.906389 AGGAGCATCTGTTACTGTCCAA 59.094 45.455 0.00 0.00 33.73 3.53
365 366 2.234661 CAGGAGCATCTGTTACTGTCCA 59.765 50.000 0.00 0.00 33.73 4.02
370 2794 3.710209 AAAGCAGGAGCATCTGTTACT 57.290 42.857 7.89 0.00 45.49 2.24
411 2835 3.878160 TTCAACCGAGCAAACCTTTTT 57.122 38.095 0.00 0.00 0.00 1.94
416 2840 3.712187 TCAAATTTCAACCGAGCAAACC 58.288 40.909 0.00 0.00 0.00 3.27
424 2848 5.116983 CGGTCTCAATTTCAAATTTCAACCG 59.883 40.000 18.28 18.28 38.79 4.44
441 2865 6.364165 CGAAATTACAAGTTAGTTCGGTCTCA 59.636 38.462 12.18 0.00 35.44 3.27
447 2871 9.212687 TGAAAAACGAAATTACAAGTTAGTTCG 57.787 29.630 16.65 16.65 42.54 3.95
449 2873 9.511144 CCTGAAAAACGAAATTACAAGTTAGTT 57.489 29.630 0.00 0.00 34.26 2.24
450 2874 8.132995 CCCTGAAAAACGAAATTACAAGTTAGT 58.867 33.333 0.00 0.00 0.00 2.24
451 2875 8.132995 ACCCTGAAAAACGAAATTACAAGTTAG 58.867 33.333 0.00 0.00 0.00 2.34
452 2876 7.998580 ACCCTGAAAAACGAAATTACAAGTTA 58.001 30.769 0.00 0.00 0.00 2.24
457 2881 6.452494 TGAACCCTGAAAAACGAAATTACA 57.548 33.333 0.00 0.00 0.00 2.41
465 2889 2.550606 TCGGATTGAACCCTGAAAAACG 59.449 45.455 0.00 0.00 0.00 3.60
467 2891 2.556622 GCTCGGATTGAACCCTGAAAAA 59.443 45.455 0.00 0.00 0.00 1.94
501 2928 1.860641 TAGGCCGAATGAGAGGTTGA 58.139 50.000 0.00 0.00 0.00 3.18
502 2929 2.918712 ATAGGCCGAATGAGAGGTTG 57.081 50.000 0.00 0.00 0.00 3.77
504 2931 1.341531 CGAATAGGCCGAATGAGAGGT 59.658 52.381 0.00 0.00 0.00 3.85
505 2932 1.613925 TCGAATAGGCCGAATGAGAGG 59.386 52.381 0.00 0.00 32.64 3.69
506 2933 3.053455 GTTCGAATAGGCCGAATGAGAG 58.947 50.000 0.00 0.00 45.88 3.20
514 2941 3.241868 CGTGTTTTAGTTCGAATAGGCCG 60.242 47.826 0.00 0.00 0.00 6.13
515 2942 3.063045 CCGTGTTTTAGTTCGAATAGGCC 59.937 47.826 0.00 0.00 0.00 5.19
548 2975 5.123186 CCCAAACAAAAGTGGAAAAAGGAAC 59.877 40.000 0.00 0.00 37.03 3.62
549 2976 5.249420 CCCAAACAAAAGTGGAAAAAGGAA 58.751 37.500 0.00 0.00 37.03 3.36
553 2980 3.244911 TGCCCCAAACAAAAGTGGAAAAA 60.245 39.130 0.00 0.00 37.03 1.94
554 2981 2.305927 TGCCCCAAACAAAAGTGGAAAA 59.694 40.909 0.00 0.00 37.03 2.29
555 2982 1.909302 TGCCCCAAACAAAAGTGGAAA 59.091 42.857 0.00 0.00 37.03 3.13
556 2983 1.573108 TGCCCCAAACAAAAGTGGAA 58.427 45.000 0.00 0.00 37.03 3.53
557 2984 1.208293 GTTGCCCCAAACAAAAGTGGA 59.792 47.619 0.00 0.00 37.03 4.02
558 2985 1.209261 AGTTGCCCCAAACAAAAGTGG 59.791 47.619 0.00 0.00 32.21 4.00
559 2986 2.689553 AGTTGCCCCAAACAAAAGTG 57.310 45.000 0.00 0.00 32.21 3.16
560 2987 3.712016 AAAGTTGCCCCAAACAAAAGT 57.288 38.095 0.00 0.00 32.21 2.66
561 2988 4.699735 AGAAAAAGTTGCCCCAAACAAAAG 59.300 37.500 0.00 0.00 32.21 2.27
562 2989 4.657013 AGAAAAAGTTGCCCCAAACAAAA 58.343 34.783 0.00 0.00 32.21 2.44
563 2990 4.293662 AGAAAAAGTTGCCCCAAACAAA 57.706 36.364 0.00 0.00 32.21 2.83
564 2991 3.990959 AGAAAAAGTTGCCCCAAACAA 57.009 38.095 0.00 0.00 32.21 2.83
565 2992 4.027437 ACTAGAAAAAGTTGCCCCAAACA 58.973 39.130 0.00 0.00 32.21 2.83
566 2993 4.341235 AGACTAGAAAAAGTTGCCCCAAAC 59.659 41.667 0.00 0.00 0.00 2.93
567 2994 4.542697 AGACTAGAAAAAGTTGCCCCAAA 58.457 39.130 0.00 0.00 0.00 3.28
568 2995 4.178956 AGACTAGAAAAAGTTGCCCCAA 57.821 40.909 0.00 0.00 0.00 4.12
569 2996 3.876309 AGACTAGAAAAAGTTGCCCCA 57.124 42.857 0.00 0.00 0.00 4.96
570 2997 3.683340 CGTAGACTAGAAAAAGTTGCCCC 59.317 47.826 0.00 0.00 0.00 5.80
571 2998 3.683340 CCGTAGACTAGAAAAAGTTGCCC 59.317 47.826 0.00 0.00 0.00 5.36
572 2999 3.124806 GCCGTAGACTAGAAAAAGTTGCC 59.875 47.826 0.00 0.00 0.00 4.52
573 3000 3.744426 TGCCGTAGACTAGAAAAAGTTGC 59.256 43.478 0.00 0.00 0.00 4.17
574 3001 5.917541 TTGCCGTAGACTAGAAAAAGTTG 57.082 39.130 0.00 0.00 0.00 3.16
575 3002 5.818857 TGTTTGCCGTAGACTAGAAAAAGTT 59.181 36.000 0.00 0.00 0.00 2.66
576 3003 5.362263 TGTTTGCCGTAGACTAGAAAAAGT 58.638 37.500 0.00 0.00 0.00 2.66
577 3004 5.917541 TGTTTGCCGTAGACTAGAAAAAG 57.082 39.130 0.00 0.00 0.00 2.27
578 3005 5.334569 GCATGTTTGCCGTAGACTAGAAAAA 60.335 40.000 0.00 0.00 43.38 1.94
594 3021 3.376859 TGCGGTAATCCTAAGCATGTTTG 59.623 43.478 4.89 0.00 32.43 2.93
595 3022 3.616219 TGCGGTAATCCTAAGCATGTTT 58.384 40.909 0.00 0.00 32.43 2.83
603 3030 9.616156 TTGTTTATAGAAATGCGGTAATCCTAA 57.384 29.630 0.00 0.00 0.00 2.69
633 3060 4.830600 ACCGTGGTGAATCCTAATGTTTTT 59.169 37.500 0.00 0.00 37.07 1.94
634 3061 4.403734 ACCGTGGTGAATCCTAATGTTTT 58.596 39.130 0.00 0.00 37.07 2.43
635 3062 4.028993 ACCGTGGTGAATCCTAATGTTT 57.971 40.909 0.00 0.00 37.07 2.83
636 3063 3.713826 ACCGTGGTGAATCCTAATGTT 57.286 42.857 0.00 0.00 37.07 2.71
637 3064 3.429822 CGTACCGTGGTGAATCCTAATGT 60.430 47.826 0.72 0.00 37.07 2.71
638 3065 3.120792 CGTACCGTGGTGAATCCTAATG 58.879 50.000 0.72 0.00 37.07 1.90
639 3066 2.762327 ACGTACCGTGGTGAATCCTAAT 59.238 45.455 0.72 0.00 39.18 1.73
640 3067 2.170166 ACGTACCGTGGTGAATCCTAA 58.830 47.619 0.72 0.00 39.18 2.69
641 3068 1.838112 ACGTACCGTGGTGAATCCTA 58.162 50.000 0.72 0.00 39.18 2.94
643 3070 2.094545 AGTTACGTACCGTGGTGAATCC 60.095 50.000 0.72 0.00 41.39 3.01
648 3075 2.226437 ACTGTAGTTACGTACCGTGGTG 59.774 50.000 0.72 0.00 41.39 4.17
659 3086 4.978083 TGCCTGCTACTACTGTAGTTAC 57.022 45.455 24.09 16.71 45.84 2.50
660 3087 5.902681 CAATGCCTGCTACTACTGTAGTTA 58.097 41.667 24.09 11.26 45.84 2.24
662 3089 4.392921 CAATGCCTGCTACTACTGTAGT 57.607 45.455 22.72 22.72 45.84 2.73
713 3152 2.612115 ACTTCCCTGGGGCCTCAG 60.612 66.667 27.05 27.05 34.68 3.35
717 3156 2.936032 ACTGACTTCCCTGGGGCC 60.936 66.667 14.00 0.00 34.68 5.80
718 3157 1.566298 ATGACTGACTTCCCTGGGGC 61.566 60.000 14.00 0.87 34.68 5.80
721 3160 1.209019 CCAGATGACTGACTTCCCTGG 59.791 57.143 0.00 0.00 46.03 4.45
793 3235 2.340443 CGGAGGAGCGGCTATTCC 59.660 66.667 17.80 17.80 0.00 3.01
870 3312 3.083997 GGTGGTCGAGGGGCAGAT 61.084 66.667 0.00 0.00 0.00 2.90
939 3386 4.847444 GCCTCTTCGCCCTGCTCC 62.847 72.222 0.00 0.00 0.00 4.70
953 3400 2.034221 GGGTTTCTCGGCTTGCCT 59.966 61.111 10.12 0.00 0.00 4.75
954 3401 2.034221 AGGGTTTCTCGGCTTGCC 59.966 61.111 0.75 0.75 0.00 4.52
955 3402 3.579685 GAGGGTTTCTCGGCTTGC 58.420 61.111 0.00 0.00 32.18 4.01
1117 3967 0.741915 GAAGAGTAGAGGAGCGGGTG 59.258 60.000 0.00 0.00 0.00 4.61
1118 3968 0.626916 AGAAGAGTAGAGGAGCGGGT 59.373 55.000 0.00 0.00 0.00 5.28
1122 3972 0.666374 GGCGAGAAGAGTAGAGGAGC 59.334 60.000 0.00 0.00 0.00 4.70
1129 3979 1.407979 GATTTCGGGGCGAGAAGAGTA 59.592 52.381 0.00 0.00 37.14 2.59
1132 3982 1.141019 CGATTTCGGGGCGAGAAGA 59.859 57.895 0.00 0.00 37.14 2.87
1262 4130 7.365840 AGCAACAGCTTAATTACTGTAGAAC 57.634 36.000 8.66 1.51 46.17 3.01
1319 4194 0.877071 ATTCACAAAGTCCTGCGCAG 59.123 50.000 30.52 30.52 0.00 5.18
1344 4227 4.496336 AGCCGCTTCTGGATGCCC 62.496 66.667 0.00 0.00 0.00 5.36
1590 4473 3.496131 GGGTGTATGTGCGGTGCG 61.496 66.667 0.00 0.00 0.00 5.34
1592 4475 2.102070 TTAAGGGTGTATGTGCGGTG 57.898 50.000 0.00 0.00 0.00 4.94
1618 4501 4.950050 AGATGAACATGGACGGATAGAAC 58.050 43.478 0.00 0.00 0.00 3.01
1627 4510 4.614535 GCTTCACACAAGATGAACATGGAC 60.615 45.833 0.00 0.00 32.67 4.02
1646 4529 0.863144 TGAGCAACGTAAACCGCTTC 59.137 50.000 0.00 0.00 41.42 3.86
1678 4567 1.386533 CAGCCAGAGCAAATACCCAG 58.613 55.000 0.00 0.00 43.56 4.45
1711 4600 2.894126 CCCTTCCTCTATCTGCACGTAT 59.106 50.000 0.00 0.00 0.00 3.06
1860 4749 4.320494 CCGAATGAAAGTAGCTGCAAGTTT 60.320 41.667 4.12 0.00 35.30 2.66
1976 4888 7.214381 TCATCGTATATCACCCCAACTTTAAG 58.786 38.462 0.00 0.00 0.00 1.85
1993 4905 3.385193 TCATTCACGCCATCATCGTAT 57.615 42.857 0.00 0.00 38.19 3.06
2035 4947 1.547675 GGATTTCTTGGGTCCACAGCA 60.548 52.381 0.00 0.00 32.23 4.41
2093 5005 1.864711 CTTGCGGGTGTCATATAACCG 59.135 52.381 0.00 0.00 46.78 4.44
2170 5082 7.027161 CGGTTATTCCATCTTGGTTTTTAGTG 58.973 38.462 0.00 0.00 39.03 2.74
2180 5092 3.206150 CCAGACCGGTTATTCCATCTTG 58.794 50.000 9.42 0.00 35.57 3.02
2314 5299 0.035598 CACCCACACCGTCACCATAA 59.964 55.000 0.00 0.00 0.00 1.90
2316 5301 2.429930 CACCCACACCGTCACCAT 59.570 61.111 0.00 0.00 0.00 3.55
2477 5462 3.092301 CCCCATCCTTCTTTCTCCAAAC 58.908 50.000 0.00 0.00 0.00 2.93
2644 5629 4.646572 ACAGAAGAGAACAAACCTCATCC 58.353 43.478 0.00 0.00 30.98 3.51
2805 5798 7.664758 AGAGGACAAAATTTTCCATTTCTCAG 58.335 34.615 10.79 0.00 33.92 3.35
2815 5808 3.120304 CGACGGGAGAGGACAAAATTTTC 60.120 47.826 0.00 0.00 0.00 2.29
2820 5816 1.005394 GCGACGGGAGAGGACAAAA 60.005 57.895 0.00 0.00 0.00 2.44
2833 5829 5.644122 CGTCTAACATATTAAAGTGCGACG 58.356 41.667 0.00 0.00 36.04 5.12
2834 5830 5.005012 TGCGTCTAACATATTAAAGTGCGAC 59.995 40.000 0.00 0.00 0.00 5.19
2911 5907 2.545322 GGAACACCGCCTAGTATAGCAC 60.545 54.545 0.00 0.00 37.37 4.40
2950 5951 0.591170 TAAGGCAGAACACAAAGCGC 59.409 50.000 0.00 0.00 0.00 5.92
2991 5992 3.571590 TGTTTTTCCAGCCCTGTATGTT 58.428 40.909 0.00 0.00 0.00 2.71
2992 5993 3.237268 TGTTTTTCCAGCCCTGTATGT 57.763 42.857 0.00 0.00 0.00 2.29
2993 5994 3.131046 GGATGTTTTTCCAGCCCTGTATG 59.869 47.826 0.00 0.00 34.80 2.39
2994 5995 3.245586 TGGATGTTTTTCCAGCCCTGTAT 60.246 43.478 0.00 0.00 40.90 2.29
2995 5996 2.109128 TGGATGTTTTTCCAGCCCTGTA 59.891 45.455 0.00 0.00 40.90 2.74
3065 6083 6.591448 GCATTCTGTCACCGATGATATATTCA 59.409 38.462 0.00 0.00 37.14 2.57
3130 6148 3.244044 TGAACATGAACGTGTCCTCATCA 60.244 43.478 0.00 0.00 29.69 3.07
3133 6151 2.754472 CTGAACATGAACGTGTCCTCA 58.246 47.619 0.00 0.00 0.00 3.86
3136 6154 1.195448 CTGCTGAACATGAACGTGTCC 59.805 52.381 0.00 0.00 0.00 4.02
3230 6248 4.144727 ATCCCCGTCGGAGGAGCT 62.145 66.667 21.31 7.93 46.60 4.09
3268 6286 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
3309 6339 3.147595 TCACGCCCTCCTCATCCG 61.148 66.667 0.00 0.00 0.00 4.18
3328 6358 1.227002 GCCCGAATCTCCGTCTGTC 60.227 63.158 0.00 0.00 0.00 3.51
3329 6359 2.893398 GCCCGAATCTCCGTCTGT 59.107 61.111 0.00 0.00 0.00 3.41
3371 6404 2.379634 CGTTCATGTCTTCGGCGCA 61.380 57.895 10.83 0.00 0.00 6.09
3483 6530 2.346597 CTATCCTGGACCGGAGAGC 58.653 63.158 9.46 0.00 35.80 4.09
3502 6549 3.244215 ACACCAACACTATCACCACTCAG 60.244 47.826 0.00 0.00 0.00 3.35
3543 6596 8.757982 ACCATAGTATCAGAAGAATGCATTTT 57.242 30.769 14.33 4.75 0.00 1.82
3587 6640 4.035208 GTCGTCTTCTTTCTTTCTTTGGCA 59.965 41.667 0.00 0.00 0.00 4.92
3625 6678 3.475774 CGAGACCGGGAAAACGCG 61.476 66.667 6.32 3.53 0.00 6.01
3626 6679 1.501337 AAACGAGACCGGGAAAACGC 61.501 55.000 6.32 0.00 40.78 4.84
3627 6680 0.233848 CAAACGAGACCGGGAAAACG 59.766 55.000 6.32 6.82 40.78 3.60
3628 6681 1.585297 TCAAACGAGACCGGGAAAAC 58.415 50.000 6.32 0.00 40.78 2.43
3629 6682 2.328819 TTCAAACGAGACCGGGAAAA 57.671 45.000 6.32 0.00 40.78 2.29
3630 6683 2.224329 TGATTCAAACGAGACCGGGAAA 60.224 45.455 6.32 0.00 40.78 3.13
3631 6684 1.345089 TGATTCAAACGAGACCGGGAA 59.655 47.619 6.32 0.00 40.78 3.97
3632 6685 0.970640 TGATTCAAACGAGACCGGGA 59.029 50.000 6.32 0.00 40.78 5.14
3648 6723 9.603921 GGGAAATTCAAATGAAATACACATGAT 57.396 29.630 0.00 0.00 37.61 2.45
3651 6726 7.545265 CGTGGGAAATTCAAATGAAATACACAT 59.455 33.333 0.00 0.00 37.61 3.21
3652 6727 6.865726 CGTGGGAAATTCAAATGAAATACACA 59.134 34.615 0.00 0.00 37.61 3.72
3653 6728 6.310224 CCGTGGGAAATTCAAATGAAATACAC 59.690 38.462 0.00 5.24 37.61 2.90
3656 6731 6.597832 ACCGTGGGAAATTCAAATGAAATA 57.402 33.333 0.00 0.00 37.61 1.40
3662 6737 4.001618 CCAAACCGTGGGAAATTCAAAT 57.998 40.909 0.00 0.00 44.64 2.32
3714 6796 2.756907 CTCCCTGGAGAATCTGGAGAA 58.243 52.381 7.45 0.00 43.31 2.87
3722 6804 1.558756 CACAAGAGCTCCCTGGAGAAT 59.441 52.381 17.38 4.28 44.53 2.40
3727 6813 0.036577 CAGACACAAGAGCTCCCTGG 60.037 60.000 10.93 5.40 0.00 4.45
3731 6817 1.342819 ACAGACAGACACAAGAGCTCC 59.657 52.381 10.93 0.00 0.00 4.70
3738 6824 1.067060 CTCGGTCACAGACAGACACAA 59.933 52.381 0.00 0.00 37.74 3.33
3743 6829 0.315251 CAAGCTCGGTCACAGACAGA 59.685 55.000 0.00 0.00 35.67 3.41
3744 6830 1.287730 GCAAGCTCGGTCACAGACAG 61.288 60.000 0.00 0.00 33.68 3.51
3747 6833 1.005748 CAGCAAGCTCGGTCACAGA 60.006 57.895 0.00 0.00 0.00 3.41
3750 6836 1.739562 CCTCAGCAAGCTCGGTCAC 60.740 63.158 0.00 0.00 0.00 3.67
3751 6837 2.659016 CCTCAGCAAGCTCGGTCA 59.341 61.111 0.00 0.00 0.00 4.02
3753 6839 3.317571 AGCCTCAGCAAGCTCGGT 61.318 61.111 8.25 0.00 43.56 4.69
3754 6840 2.818714 CAGCCTCAGCAAGCTCGG 60.819 66.667 0.00 0.00 43.56 4.63
3755 6841 2.099431 GTCAGCCTCAGCAAGCTCG 61.099 63.158 0.00 0.00 43.56 5.03
3756 6842 0.392729 ATGTCAGCCTCAGCAAGCTC 60.393 55.000 0.00 0.00 43.56 4.09
3757 6843 0.392729 GATGTCAGCCTCAGCAAGCT 60.393 55.000 0.00 0.00 43.56 3.74
3758 6844 0.392729 AGATGTCAGCCTCAGCAAGC 60.393 55.000 0.00 0.00 43.56 4.01
3759 6845 1.066358 TGAGATGTCAGCCTCAGCAAG 60.066 52.381 4.19 0.00 43.56 4.01
3760 6846 0.978907 TGAGATGTCAGCCTCAGCAA 59.021 50.000 4.19 0.00 43.56 3.91
3761 6847 0.248565 GTGAGATGTCAGCCTCAGCA 59.751 55.000 7.69 0.00 43.56 4.41
3762 6848 0.805322 CGTGAGATGTCAGCCTCAGC 60.805 60.000 7.69 3.99 39.77 4.26
3829 6915 2.319472 GAAAGGCAAATGCGTCTCAAC 58.681 47.619 0.59 0.00 43.26 3.18
3844 6930 2.481952 CTGGTGAAAGAGAAGCGAAAGG 59.518 50.000 0.00 0.00 0.00 3.11
3894 6982 1.743996 GGCGAGCAGATTTCTCCTTT 58.256 50.000 0.00 0.00 0.00 3.11
3895 6983 0.460987 CGGCGAGCAGATTTCTCCTT 60.461 55.000 0.00 0.00 0.00 3.36
3896 6984 1.142748 CGGCGAGCAGATTTCTCCT 59.857 57.895 0.00 0.00 0.00 3.69
3897 6985 3.711348 CGGCGAGCAGATTTCTCC 58.289 61.111 0.00 0.00 0.00 3.71
4056 7147 2.355481 AAACGAGACGCACGGGAC 60.355 61.111 0.00 0.00 34.93 4.46
4062 7164 0.596577 AGCAGTAGAAACGAGACGCA 59.403 50.000 0.00 0.00 0.00 5.24
4100 7202 4.994756 AGGCAAGGCAAACGGGGG 62.995 66.667 0.00 0.00 0.00 5.40
4101 7203 2.917227 AAGGCAAGGCAAACGGGG 60.917 61.111 0.00 0.00 0.00 5.73
4102 7204 2.339712 CAAGGCAAGGCAAACGGG 59.660 61.111 0.00 0.00 0.00 5.28
4105 7207 4.348857 CTGCAAGGCAAGGCAAAC 57.651 55.556 0.00 0.00 39.93 2.93
4357 7478 1.344438 AGTCTGATCCAACAGCGACAA 59.656 47.619 0.00 0.00 37.75 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.