Multiple sequence alignment - TraesCS7D01G528400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G528400 chr7D 100.000 5102 0 0 1 5102 623531209 623536310 0.000000e+00 9422.0
1 TraesCS7D01G528400 chr7A 92.510 3111 186 30 2011 5096 719565404 719568492 0.000000e+00 4410.0
2 TraesCS7D01G528400 chr7A 82.401 1091 95 46 887 1939 719564378 719565409 0.000000e+00 861.0
3 TraesCS7D01G528400 chr7A 93.714 175 11 0 561 735 643187054 643186880 3.920000e-66 263.0
4 TraesCS7D01G528400 chr7B 91.869 3124 197 30 2011 5096 721198374 721201478 0.000000e+00 4309.0
5 TraesCS7D01G528400 chr7B 85.647 641 44 22 785 1396 721197256 721197877 9.320000e-177 630.0
6 TraesCS7D01G528400 chr7B 91.254 343 21 7 1 340 721196270 721196606 4.660000e-125 459.0
7 TraesCS7D01G528400 chr7B 78.440 436 51 15 1542 1939 721197949 721198379 1.420000e-60 244.0
8 TraesCS7D01G528400 chr7B 89.474 190 16 4 394 581 721196754 721196941 2.370000e-58 237.0
9 TraesCS7D01G528400 chr7B 91.463 82 4 3 1934 2014 103567609 103567530 5.400000e-20 110.0
10 TraesCS7D01G528400 chr7B 93.182 44 3 0 1424 1467 721197885 721197928 1.190000e-06 65.8
11 TraesCS7D01G528400 chr2A 84.890 364 35 12 858 1213 759977651 759978002 2.920000e-92 350.0
12 TraesCS7D01G528400 chr2A 84.884 86 8 1 1933 2013 104969673 104969758 1.180000e-11 82.4
13 TraesCS7D01G528400 chr2A 90.625 64 3 2 1952 2013 763023187 763023249 1.180000e-11 82.4
14 TraesCS7D01G528400 chr4B 80.702 456 57 15 1344 1787 648972975 648973411 4.930000e-85 326.0
15 TraesCS7D01G528400 chr2B 94.706 170 9 0 557 726 786251030 786251199 1.090000e-66 265.0
16 TraesCS7D01G528400 chr2B 83.333 90 13 1 172 259 736884097 736884186 1.180000e-11 82.4
17 TraesCS7D01G528400 chr6D 95.152 165 8 0 561 725 305359627 305359791 1.410000e-65 261.0
18 TraesCS7D01G528400 chr6B 94.152 171 10 0 555 725 343024226 343024396 1.410000e-65 261.0
19 TraesCS7D01G528400 chr6B 90.361 83 4 2 1934 2013 710004839 710004758 6.990000e-19 106.0
20 TraesCS7D01G528400 chr6B 86.905 84 7 4 1934 2014 365699525 365699607 1.960000e-14 91.6
21 TraesCS7D01G528400 chr4D 92.818 181 11 2 550 728 423909759 423909579 1.410000e-65 261.0
22 TraesCS7D01G528400 chr4D 93.605 172 11 0 554 725 243613265 243613436 1.820000e-64 257.0
23 TraesCS7D01G528400 chr4D 82.796 93 12 3 172 261 48700981 48700890 4.230000e-11 80.5
24 TraesCS7D01G528400 chr1D 92.350 183 11 3 553 733 9218198 9218379 1.820000e-64 257.0
25 TraesCS7D01G528400 chr1D 86.207 87 4 4 1934 2013 121773735 121773650 2.530000e-13 87.9
26 TraesCS7D01G528400 chr5D 93.143 175 10 2 551 725 69515118 69515290 6.560000e-64 255.0
27 TraesCS7D01G528400 chr6A 92.179 179 12 2 548 725 458217887 458217710 8.480000e-63 252.0
28 TraesCS7D01G528400 chr6A 83.721 86 14 0 172 257 66388077 66388162 1.180000e-11 82.4
29 TraesCS7D01G528400 chr6A 82.857 70 9 2 174 241 49589936 49589868 5.520000e-05 60.2
30 TraesCS7D01G528400 chr1A 89.286 84 6 2 1934 2017 555640345 555640265 9.040000e-18 102.0
31 TraesCS7D01G528400 chr1A 81.319 91 12 4 175 262 256821984 256822072 9.170000e-08 69.4
32 TraesCS7D01G528400 chr1B 88.750 80 4 1 1934 2013 440500296 440500370 5.440000e-15 93.5
33 TraesCS7D01G528400 chr1B 83.784 74 10 1 189 260 186799351 186799424 9.170000e-08 69.4
34 TraesCS7D01G528400 chr3A 90.323 62 4 2 1919 1979 530186683 530186743 4.230000e-11 80.5
35 TraesCS7D01G528400 chr3A 82.857 70 9 2 174 241 118402022 118401954 5.520000e-05 60.2
36 TraesCS7D01G528400 chr3D 84.146 82 10 3 1933 2013 352361658 352361579 5.480000e-10 76.8
37 TraesCS7D01G528400 chr4A 91.667 48 4 0 169 216 708514139 708514186 3.300000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G528400 chr7D 623531209 623536310 5101 False 9422.0 9422 100.0000 1 5102 1 chr7D.!!$F1 5101
1 TraesCS7D01G528400 chr7A 719564378 719568492 4114 False 2635.5 4410 87.4555 887 5096 2 chr7A.!!$F1 4209
2 TraesCS7D01G528400 chr7B 721196270 721201478 5208 False 990.8 4309 88.3110 1 5096 6 chr7B.!!$F1 5095

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 358 0.033109 GGTCCCCCTCCCATTTTCTG 60.033 60.0 0.00 0.00 0.0 3.02 F
1490 1821 0.109153 CATGCCCTGTGCTGCCTATA 59.891 55.0 0.00 0.00 42.0 1.31 F
1963 2333 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.0 26.94 5.77 0.0 4.30 F
2070 2441 0.179018 ACCAACTTGTGCTGACCTCC 60.179 55.0 0.00 0.00 0.0 4.30 F
3278 3664 0.179936 AAGCCATGGTAGAGCAGAGC 59.820 55.0 14.67 0.00 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1944 2314 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.0 22.30 0.0 32.00 5.14 R
2308 2681 0.819582 ATGCCAGAATTTGCTTCCGG 59.180 50.0 0.00 0.0 34.91 5.14 R
3727 4134 0.179936 GCAGGCAAGCTAGACTGGAT 59.820 55.0 11.83 0.0 45.03 3.41 R
3733 4140 0.321671 AACTTCGCAGGCAAGCTAGA 59.678 50.0 0.00 0.0 0.00 2.43 R
4309 4717 0.322546 ATGGAGCCTTGGGACGAAAC 60.323 55.0 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.879677 TGTGTAGATTCAAGTTTCATGAGATGT 59.120 33.333 0.00 0.00 0.00 3.06
45 46 8.173775 GTGTAGATTCAAGTTTCATGAGATGTG 58.826 37.037 0.00 0.00 0.00 3.21
63 64 9.030301 TGAGATGTGATGTAATGTAATGTAACG 57.970 33.333 0.00 0.00 0.00 3.18
64 65 8.942338 AGATGTGATGTAATGTAATGTAACGT 57.058 30.769 0.00 0.00 0.00 3.99
69 70 7.215568 GTGATGTAATGTAATGTAACGTGTTGC 59.784 37.037 0.00 0.00 0.00 4.17
76 77 1.085091 TGTAACGTGTTGCGGTTTGT 58.915 45.000 0.00 0.00 46.52 2.83
90 91 1.595794 GGTTTGTTTTCTCGCAGTCGA 59.404 47.619 0.00 0.00 43.28 4.20
93 94 2.432206 TGTTTTCTCGCAGTCGATCA 57.568 45.000 0.00 0.00 44.56 2.92
102 103 1.363744 GCAGTCGATCAGTTCCCTTG 58.636 55.000 0.00 0.00 0.00 3.61
110 111 1.048601 TCAGTTCCCTTGCGTTCTCT 58.951 50.000 0.00 0.00 0.00 3.10
251 254 8.934507 AAAAGTCTTAGATTTCGATACAGAGG 57.065 34.615 0.00 0.00 0.00 3.69
253 256 6.366340 AGTCTTAGATTTCGATACAGAGGGA 58.634 40.000 0.00 0.00 0.00 4.20
254 257 6.488683 AGTCTTAGATTTCGATACAGAGGGAG 59.511 42.308 0.00 0.00 0.00 4.30
260 263 7.232188 AGATTTCGATACAGAGGGAGTACATA 58.768 38.462 0.00 0.00 0.00 2.29
261 264 7.891183 AGATTTCGATACAGAGGGAGTACATAT 59.109 37.037 0.00 0.00 0.00 1.78
262 265 7.834881 TTTCGATACAGAGGGAGTACATATT 57.165 36.000 0.00 0.00 0.00 1.28
310 313 8.542132 CAGAAACCATTGACTTGTAAACAAATG 58.458 33.333 0.00 0.00 35.15 2.32
315 318 6.866248 CCATTGACTTGTAAACAAATGGTACC 59.134 38.462 4.43 4.43 36.49 3.34
317 320 6.870971 TGACTTGTAAACAAATGGTACCTC 57.129 37.500 14.36 0.00 35.15 3.85
318 321 5.766174 TGACTTGTAAACAAATGGTACCTCC 59.234 40.000 14.36 0.00 35.15 4.30
319 322 4.758165 ACTTGTAAACAAATGGTACCTCCG 59.242 41.667 14.36 1.56 35.63 4.63
320 323 4.354893 TGTAAACAAATGGTACCTCCGT 57.645 40.909 14.36 2.22 39.52 4.69
321 324 4.317488 TGTAAACAAATGGTACCTCCGTC 58.683 43.478 14.36 0.00 39.52 4.79
326 329 3.000727 CAAATGGTACCTCCGTCTGTTC 58.999 50.000 14.36 0.00 39.52 3.18
340 343 2.745821 GTCTGTTCGGGTTTATTGGTCC 59.254 50.000 0.00 0.00 0.00 4.46
343 346 0.332293 TTCGGGTTTATTGGTCCCCC 59.668 55.000 0.00 0.00 38.09 5.40
346 349 0.260816 GGGTTTATTGGTCCCCCTCC 59.739 60.000 0.00 0.00 35.52 4.30
347 350 0.260816 GGTTTATTGGTCCCCCTCCC 59.739 60.000 0.00 0.00 0.00 4.30
348 351 1.004436 GTTTATTGGTCCCCCTCCCA 58.996 55.000 0.00 0.00 0.00 4.37
349 352 1.573857 GTTTATTGGTCCCCCTCCCAT 59.426 52.381 0.00 0.00 0.00 4.00
350 353 2.009186 TTATTGGTCCCCCTCCCATT 57.991 50.000 0.00 0.00 0.00 3.16
351 354 2.009186 TATTGGTCCCCCTCCCATTT 57.991 50.000 0.00 0.00 0.00 2.32
352 355 1.101195 ATTGGTCCCCCTCCCATTTT 58.899 50.000 0.00 0.00 0.00 1.82
353 356 0.411848 TTGGTCCCCCTCCCATTTTC 59.588 55.000 0.00 0.00 0.00 2.29
354 357 0.479589 TGGTCCCCCTCCCATTTTCT 60.480 55.000 0.00 0.00 0.00 2.52
355 358 0.033109 GGTCCCCCTCCCATTTTCTG 60.033 60.000 0.00 0.00 0.00 3.02
356 359 0.684479 GTCCCCCTCCCATTTTCTGC 60.684 60.000 0.00 0.00 0.00 4.26
357 360 1.381735 CCCCCTCCCATTTTCTGCC 60.382 63.158 0.00 0.00 0.00 4.85
358 361 1.381735 CCCCTCCCATTTTCTGCCC 60.382 63.158 0.00 0.00 0.00 5.36
359 362 1.387737 CCCTCCCATTTTCTGCCCA 59.612 57.895 0.00 0.00 0.00 5.36
360 363 0.252193 CCCTCCCATTTTCTGCCCAA 60.252 55.000 0.00 0.00 0.00 4.12
361 364 1.623279 CCCTCCCATTTTCTGCCCAAT 60.623 52.381 0.00 0.00 0.00 3.16
362 365 2.190538 CCTCCCATTTTCTGCCCAATT 58.809 47.619 0.00 0.00 0.00 2.32
363 366 2.573009 CCTCCCATTTTCTGCCCAATTT 59.427 45.455 0.00 0.00 0.00 1.82
364 367 3.009363 CCTCCCATTTTCTGCCCAATTTT 59.991 43.478 0.00 0.00 0.00 1.82
365 368 4.004982 CTCCCATTTTCTGCCCAATTTTG 58.995 43.478 0.00 0.00 0.00 2.44
366 369 3.649981 TCCCATTTTCTGCCCAATTTTGA 59.350 39.130 0.00 0.00 0.00 2.69
367 370 4.289148 TCCCATTTTCTGCCCAATTTTGAT 59.711 37.500 0.00 0.00 0.00 2.57
368 371 4.637091 CCCATTTTCTGCCCAATTTTGATC 59.363 41.667 0.00 0.00 0.00 2.92
443 561 6.851609 TGGATTCATATTCGAAACAGGTTTG 58.148 36.000 0.00 0.00 32.11 2.93
446 564 7.484959 GGATTCATATTCGAAACAGGTTTGAAC 59.515 37.037 0.00 0.00 32.11 3.18
450 568 7.546316 TCATATTCGAAACAGGTTTGAACGATA 59.454 33.333 0.00 0.00 32.11 2.92
465 583 9.881529 GTTTGAACGATACTATTTTTGTGGTAA 57.118 29.630 0.00 0.00 0.00 2.85
503 621 7.296628 TGGTAGTTAAATCAAATGCCAAAGT 57.703 32.000 0.00 0.00 42.85 2.66
511 629 2.103941 TCAAATGCCAAAGTTTGACCCC 59.896 45.455 17.33 3.36 38.88 4.95
515 633 1.909302 TGCCAAAGTTTGACCCCAAAA 59.091 42.857 17.33 0.00 43.18 2.44
516 634 2.507471 TGCCAAAGTTTGACCCCAAAAT 59.493 40.909 17.33 0.00 43.18 1.82
517 635 3.711704 TGCCAAAGTTTGACCCCAAAATA 59.288 39.130 17.33 0.00 43.18 1.40
518 636 4.062293 GCCAAAGTTTGACCCCAAAATAC 58.938 43.478 17.33 0.00 43.18 1.89
523 641 7.201688 CCAAAGTTTGACCCCAAAATACAAAAG 60.202 37.037 17.33 0.00 43.18 2.27
541 659 6.443832 ACAAAAGGGGCTAATAAATCCTGAT 58.556 36.000 0.00 0.00 0.00 2.90
548 666 5.006386 GGCTAATAAATCCTGATGGAGGTG 58.994 45.833 0.00 0.00 46.91 4.00
563 681 4.228824 TGGAGGTGGTACAAAGAAGTACT 58.771 43.478 0.00 0.00 44.16 2.73
572 690 2.970640 ACAAAGAAGTACTCCCTCCGTT 59.029 45.455 0.00 0.00 0.00 4.44
575 693 1.358445 AGAAGTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
576 694 2.579860 AGAAGTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
581 699 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
583 701 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
585 703 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
586 704 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
587 705 4.439968 CCTCCGTTCCTAAATACAAGTCC 58.560 47.826 0.00 0.00 0.00 3.85
588 706 4.161754 CCTCCGTTCCTAAATACAAGTCCT 59.838 45.833 0.00 0.00 0.00 3.85
592 710 7.678837 TCCGTTCCTAAATACAAGTCCTTTTA 58.321 34.615 0.00 0.00 0.00 1.52
593 711 7.820872 TCCGTTCCTAAATACAAGTCCTTTTAG 59.179 37.037 0.00 0.00 33.47 1.85
594 712 7.820872 CCGTTCCTAAATACAAGTCCTTTTAGA 59.179 37.037 0.00 0.00 34.90 2.10
595 713 8.654215 CGTTCCTAAATACAAGTCCTTTTAGAC 58.346 37.037 0.00 0.00 34.90 2.59
606 724 9.981114 ACAAGTCCTTTTAGACATTTTAAATGG 57.019 29.630 20.00 5.69 39.34 3.16
619 737 9.485591 GACATTTTAAATGGACTACAACATACG 57.514 33.333 20.00 0.00 0.00 3.06
620 738 8.455682 ACATTTTAAATGGACTACAACATACGG 58.544 33.333 20.00 0.00 0.00 4.02
623 741 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
624 742 3.173668 TGGACTACAACATACGGATGC 57.826 47.619 7.78 0.00 36.43 3.91
625 743 2.498078 TGGACTACAACATACGGATGCA 59.502 45.455 7.78 0.00 36.43 3.96
626 744 3.133901 TGGACTACAACATACGGATGCAT 59.866 43.478 7.78 0.00 36.43 3.96
627 745 3.494626 GGACTACAACATACGGATGCATG 59.505 47.826 7.78 9.99 36.43 4.06
628 746 4.119862 GACTACAACATACGGATGCATGT 58.880 43.478 19.89 19.89 38.92 3.21
629 747 5.270893 ACTACAACATACGGATGCATGTA 57.729 39.130 19.97 19.97 37.51 2.29
630 748 5.829233 CTACAACATACGGATGCATGTAG 57.171 43.478 26.90 26.90 43.29 2.74
632 750 4.119862 ACAACATACGGATGCATGTAGAC 58.880 43.478 15.89 0.00 35.66 2.59
634 752 4.607293 ACATACGGATGCATGTAGACAT 57.393 40.909 7.78 0.00 36.43 3.06
636 754 5.470368 ACATACGGATGCATGTAGACATAC 58.530 41.667 7.78 0.00 36.43 2.39
637 755 5.243954 ACATACGGATGCATGTAGACATACT 59.756 40.000 7.78 0.00 36.43 2.12
638 756 4.672587 ACGGATGCATGTAGACATACTT 57.327 40.909 2.46 0.00 34.26 2.24
639 757 5.023533 ACGGATGCATGTAGACATACTTT 57.976 39.130 2.46 0.00 34.26 2.66
640 758 6.156748 ACGGATGCATGTAGACATACTTTA 57.843 37.500 2.46 0.00 34.26 1.85
641 759 6.216569 ACGGATGCATGTAGACATACTTTAG 58.783 40.000 2.46 0.00 34.26 1.85
642 760 6.040504 ACGGATGCATGTAGACATACTTTAGA 59.959 38.462 2.46 0.00 34.26 2.10
643 761 6.584184 CGGATGCATGTAGACATACTTTAGAG 59.416 42.308 2.46 0.00 34.26 2.43
644 762 7.437748 GGATGCATGTAGACATACTTTAGAGT 58.562 38.462 2.46 0.00 39.97 3.24
645 763 8.577296 GGATGCATGTAGACATACTTTAGAGTA 58.423 37.037 2.46 0.00 42.30 2.59
664 782 9.890629 TTAGAGTATACATTCACTCATTTTGCT 57.109 29.630 5.50 0.00 42.99 3.91
665 783 8.430801 AGAGTATACATTCACTCATTTTGCTC 57.569 34.615 5.50 0.00 42.99 4.26
666 784 7.497249 AGAGTATACATTCACTCATTTTGCTCC 59.503 37.037 5.50 0.00 42.99 4.70
667 785 3.837213 ACATTCACTCATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
668 786 3.149196 ACATTCACTCATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
669 787 4.323417 ACATTCACTCATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
670 788 4.943705 ACATTCACTCATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
671 789 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
672 790 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
673 791 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
674 792 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
675 793 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
676 794 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
677 795 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
678 796 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
679 797 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
680 798 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
681 799 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
682 800 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
683 801 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
684 802 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
685 803 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
686 804 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
687 805 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
688 806 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
689 807 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
690 808 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
691 809 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
692 810 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
693 811 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
694 812 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
695 813 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
696 814 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
697 815 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
698 816 8.159344 AGTCACTTGTTGGAATCTCTAAAAAG 57.841 34.615 2.17 2.17 37.94 2.27
699 817 7.993183 AGTCACTTGTTGGAATCTCTAAAAAGA 59.007 33.333 9.03 0.00 35.06 2.52
727 845 5.536497 ATTTGGGAACAGAGGGAGTATTT 57.464 39.130 0.00 0.00 44.54 1.40
733 851 5.280830 GGGAACAGAGGGAGTATTTGGTTAA 60.281 44.000 0.00 0.00 0.00 2.01
738 856 4.850386 AGAGGGAGTATTTGGTTAAGTGGT 59.150 41.667 0.00 0.00 0.00 4.16
742 860 7.528675 AGGGAGTATTTGGTTAAGTGGTTTTA 58.471 34.615 0.00 0.00 0.00 1.52
771 889 0.654683 CACTGAAATAGCTGGCTCGC 59.345 55.000 0.00 0.00 0.00 5.03
774 892 0.806102 TGAAATAGCTGGCTCGCGTC 60.806 55.000 5.77 0.00 34.40 5.19
803 1091 1.275010 TGTATTCAACAGGCGCTCTCA 59.725 47.619 7.64 0.00 33.01 3.27
807 1095 2.515926 TCAACAGGCGCTCTCATATC 57.484 50.000 7.64 0.00 0.00 1.63
817 1112 3.243704 GCGCTCTCATATCTTGACTCCTT 60.244 47.826 0.00 0.00 0.00 3.36
825 1120 8.816894 TCTCATATCTTGACTCCTTACAAAACT 58.183 33.333 0.00 0.00 0.00 2.66
827 1122 9.219603 TCATATCTTGACTCCTTACAAAACTTG 57.780 33.333 0.00 0.00 0.00 3.16
830 1125 6.588204 TCTTGACTCCTTACAAAACTTGCTA 58.412 36.000 0.00 0.00 0.00 3.49
881 1177 2.397044 TGTTTTTCCTGCCAGGGATT 57.603 45.000 11.68 0.00 35.59 3.01
882 1178 2.688477 TGTTTTTCCTGCCAGGGATTT 58.312 42.857 11.68 0.00 35.59 2.17
921 1226 2.610859 AAGCCCAGACCGGTCCAT 60.611 61.111 30.82 11.13 0.00 3.41
923 1228 1.789576 AAGCCCAGACCGGTCCATTT 61.790 55.000 30.82 15.11 0.00 2.32
983 1293 4.796231 GAAAGCGGCGAGGCTCGA 62.796 66.667 38.56 0.00 43.93 4.04
984 1294 4.373116 AAAGCGGCGAGGCTCGAA 62.373 61.111 38.56 0.00 43.93 3.71
991 1301 3.691342 CGAGGCTCGAACCCACCA 61.691 66.667 32.07 0.00 43.74 4.17
992 1302 2.047179 GAGGCTCGAACCCACCAC 60.047 66.667 0.00 0.00 0.00 4.16
993 1303 3.934391 GAGGCTCGAACCCACCACG 62.934 68.421 0.00 0.00 0.00 4.94
994 1304 3.998672 GGCTCGAACCCACCACGA 61.999 66.667 0.00 0.00 34.90 4.35
996 1306 2.261671 CTCGAACCCACCACGAGG 59.738 66.667 0.00 0.00 46.10 4.63
997 1307 3.934391 CTCGAACCCACCACGAGGC 62.934 68.421 0.00 0.00 46.10 4.70
999 1309 4.717313 GAACCCACCACGAGGCCC 62.717 72.222 0.00 0.00 39.06 5.80
1144 1467 2.260822 ACTGCAGGACATACAGAAGGT 58.739 47.619 19.93 0.00 35.38 3.50
1305 1631 3.654143 GGCCCCAACCCGGTAAGT 61.654 66.667 0.00 0.00 0.00 2.24
1316 1642 1.078497 CGGTAAGTGAGCATGCCCA 60.078 57.895 15.66 5.73 0.00 5.36
1332 1663 3.432588 CACTCGCCGTCCTCTCGT 61.433 66.667 0.00 0.00 0.00 4.18
1490 1821 0.109153 CATGCCCTGTGCTGCCTATA 59.891 55.000 0.00 0.00 42.00 1.31
1492 1823 0.982852 TGCCCTGTGCTGCCTATAGT 60.983 55.000 0.00 0.00 42.00 2.12
1493 1824 0.533755 GCCCTGTGCTGCCTATAGTG 60.534 60.000 0.00 0.00 36.87 2.74
1495 1826 1.210478 CCCTGTGCTGCCTATAGTGTT 59.790 52.381 0.00 0.00 0.00 3.32
1496 1827 2.356125 CCCTGTGCTGCCTATAGTGTTT 60.356 50.000 0.00 0.00 0.00 2.83
1497 1828 3.118408 CCCTGTGCTGCCTATAGTGTTTA 60.118 47.826 0.00 0.00 0.00 2.01
1498 1829 3.871594 CCTGTGCTGCCTATAGTGTTTAC 59.128 47.826 0.00 0.00 0.00 2.01
1499 1830 4.503910 CTGTGCTGCCTATAGTGTTTACA 58.496 43.478 0.00 0.00 0.00 2.41
1505 1836 5.160607 TGCCTATAGTGTTTACAACTGCT 57.839 39.130 0.00 0.00 0.00 4.24
1527 1858 2.486966 GAGCTGAATTGCCGTGGC 59.513 61.111 3.30 3.30 42.35 5.01
1543 1874 2.072298 GTGGCACTGAAGAAGTAGCTG 58.928 52.381 11.13 0.00 36.83 4.24
1557 1888 3.859443 AGTAGCTGCTTCTTCAGATGTG 58.141 45.455 7.79 0.00 36.19 3.21
1574 1905 6.266330 TCAGATGTGAATCTACTCATAGTGGG 59.734 42.308 0.00 0.00 0.00 4.61
1577 1908 7.952930 AGATGTGAATCTACTCATAGTGGGTAT 59.047 37.037 0.00 0.00 32.06 2.73
1583 1914 4.899457 TCTACTCATAGTGGGTATTGGTGG 59.101 45.833 0.00 0.00 32.06 4.61
1596 1935 3.615709 GGTGGCACAAACCAGGGC 61.616 66.667 20.82 0.00 44.16 5.19
1617 1956 1.918957 AGATAACCTGCAAAGGAGGCT 59.081 47.619 4.35 0.00 33.39 4.58
1642 1982 5.798125 TTTTTAATGGCATTGACCACTGA 57.202 34.783 22.57 0.00 44.17 3.41
1651 1991 2.048127 GACCACTGACCGACCAGC 60.048 66.667 4.30 0.00 37.68 4.85
1652 1992 3.591254 GACCACTGACCGACCAGCC 62.591 68.421 4.30 0.00 37.68 4.85
1657 1997 2.284625 TGACCGACCAGCCCTGAT 60.285 61.111 0.00 0.00 0.00 2.90
1658 1998 2.187946 GACCGACCAGCCCTGATG 59.812 66.667 0.00 0.00 0.00 3.07
1664 2004 0.835941 GACCAGCCCTGATGATCTGT 59.164 55.000 0.00 0.00 0.00 3.41
1674 2014 5.411977 GCCCTGATGATCTGTGAAGATTATG 59.588 44.000 0.00 0.00 0.00 1.90
1708 2048 4.581824 ACTTGCACAAACTTGTCTGATGAT 59.418 37.500 0.00 0.00 39.91 2.45
1709 2049 4.754372 TGCACAAACTTGTCTGATGATC 57.246 40.909 0.00 0.00 39.91 2.92
1722 2062 4.038282 GTCTGATGATCTCTGCTGATCTGT 59.962 45.833 13.19 5.41 42.30 3.41
1728 2068 7.991460 TGATGATCTCTGCTGATCTGTAAAAAT 59.009 33.333 13.19 1.38 42.30 1.82
1733 2073 8.571461 TCTCTGCTGATCTGTAAAAATGAATT 57.429 30.769 1.27 0.00 0.00 2.17
1737 2077 9.234384 CTGCTGATCTGTAAAAATGAATTGATC 57.766 33.333 1.27 0.00 0.00 2.92
1753 2101 5.557891 ATTGATCTGTTTGCTGCTAGTTC 57.442 39.130 0.00 0.56 0.00 3.01
1764 2112 0.541863 TGCTAGTTCCTTAGCCTGGC 59.458 55.000 11.65 11.65 44.29 4.85
1768 2116 2.907458 AGTTCCTTAGCCTGGCAAAT 57.093 45.000 22.65 2.30 0.00 2.32
1779 2127 2.819608 GCCTGGCAAATAAAGTGTCTCA 59.180 45.455 15.17 0.00 0.00 3.27
1790 2138 8.664798 CAAATAAAGTGTCTCAATTACATCGGA 58.335 33.333 0.00 0.00 0.00 4.55
1792 2140 3.786635 AGTGTCTCAATTACATCGGAGC 58.213 45.455 0.00 0.00 0.00 4.70
1793 2141 3.449018 AGTGTCTCAATTACATCGGAGCT 59.551 43.478 0.00 0.00 0.00 4.09
1794 2142 3.799420 GTGTCTCAATTACATCGGAGCTC 59.201 47.826 4.71 4.71 0.00 4.09
1803 2164 3.729489 TCGGAGCTCGAGACCCCT 61.729 66.667 18.75 2.79 43.74 4.79
1838 2199 3.134804 ACCCGCTGTCTTTTCTAGCATAT 59.865 43.478 0.00 0.00 37.29 1.78
1856 2226 4.568956 CATATATCTGTCACCATTGCGGA 58.431 43.478 0.00 0.00 38.63 5.54
1864 2234 4.738998 CCATTGCGGAGGGGCACA 62.739 66.667 0.00 0.00 43.82 4.57
1874 2244 1.479757 GGAGGGGCACAAAGTTGGTTA 60.480 52.381 0.00 0.00 0.00 2.85
1883 2253 4.690280 GCACAAAGTTGGTTATCAATTGGG 59.310 41.667 5.42 0.00 37.73 4.12
1884 2254 5.741673 GCACAAAGTTGGTTATCAATTGGGT 60.742 40.000 5.42 0.00 37.73 4.51
1885 2255 6.517529 GCACAAAGTTGGTTATCAATTGGGTA 60.518 38.462 5.42 0.00 37.73 3.69
1886 2256 7.090173 CACAAAGTTGGTTATCAATTGGGTAG 58.910 38.462 5.42 0.00 37.73 3.18
1887 2257 5.914898 AAGTTGGTTATCAATTGGGTAGC 57.085 39.130 5.42 1.82 37.73 3.58
1888 2258 4.929479 AGTTGGTTATCAATTGGGTAGCA 58.071 39.130 5.42 4.23 37.73 3.49
1889 2259 4.705023 AGTTGGTTATCAATTGGGTAGCAC 59.295 41.667 5.42 3.08 37.73 4.40
1890 2260 4.308526 TGGTTATCAATTGGGTAGCACA 57.691 40.909 5.42 0.72 0.00 4.57
1891 2261 4.269183 TGGTTATCAATTGGGTAGCACAG 58.731 43.478 5.42 0.00 0.00 3.66
1892 2262 3.066760 GGTTATCAATTGGGTAGCACAGC 59.933 47.826 5.42 0.00 0.00 4.40
1893 2263 1.767759 ATCAATTGGGTAGCACAGCC 58.232 50.000 5.42 0.00 45.72 4.85
1897 2267 2.299867 CAATTGGGTAGCACAGCCTTTT 59.700 45.455 0.00 0.12 45.71 2.27
1939 2309 4.270008 ACATAGGCATGTTTTGTACTCCC 58.730 43.478 0.00 0.00 42.98 4.30
1940 2310 4.018415 ACATAGGCATGTTTTGTACTCCCT 60.018 41.667 0.00 0.00 42.98 4.20
1941 2311 3.073274 AGGCATGTTTTGTACTCCCTC 57.927 47.619 0.00 0.00 0.00 4.30
1942 2312 2.092323 GGCATGTTTTGTACTCCCTCC 58.908 52.381 0.00 0.00 0.00 4.30
1943 2313 1.737793 GCATGTTTTGTACTCCCTCCG 59.262 52.381 0.00 0.00 0.00 4.63
1944 2314 2.874457 GCATGTTTTGTACTCCCTCCGT 60.874 50.000 0.00 0.00 0.00 4.69
1945 2315 2.825861 TGTTTTGTACTCCCTCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
1946 2316 1.345415 TGTTTTGTACTCCCTCCGTCC 59.655 52.381 0.00 0.00 0.00 4.79
1947 2317 0.604578 TTTTGTACTCCCTCCGTCCG 59.395 55.000 0.00 0.00 0.00 4.79
1948 2318 1.252904 TTTGTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
1949 2319 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
1950 2320 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1951 2321 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1952 2322 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
1953 2323 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
1954 2324 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
1955 2325 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
1956 2326 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
1957 2327 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
1958 2328 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
1959 2329 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
1960 2330 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
1961 2331 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
1962 2332 0.250770 GTCCGGAAAAGCTTGTCCCT 60.251 55.000 26.94 0.00 0.00 4.20
1963 2333 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
1964 2334 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
1965 2335 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
1966 2336 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
1967 2337 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
1968 2338 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
1969 2339 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
1970 2340 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
1971 2341 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
1972 2342 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1973 2343 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
1974 2344 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
1975 2345 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
1976 2346 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1977 2347 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
1978 2348 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
1979 2349 6.823286 TGTCCCTCAAATGGATGTATCTAA 57.177 37.500 0.00 0.00 33.65 2.10
1980 2350 6.830912 TGTCCCTCAAATGGATGTATCTAAG 58.169 40.000 0.00 0.00 33.65 2.18
1981 2351 5.703130 GTCCCTCAAATGGATGTATCTAAGC 59.297 44.000 0.00 0.00 33.65 3.09
1982 2352 5.608437 TCCCTCAAATGGATGTATCTAAGCT 59.392 40.000 0.00 0.00 0.00 3.74
1983 2353 6.101734 TCCCTCAAATGGATGTATCTAAGCTT 59.898 38.462 3.48 3.48 0.00 3.74
1984 2354 6.206243 CCCTCAAATGGATGTATCTAAGCTTG 59.794 42.308 9.86 0.00 0.00 4.01
1985 2355 6.206243 CCTCAAATGGATGTATCTAAGCTTGG 59.794 42.308 9.86 6.29 0.00 3.61
1986 2356 6.064060 TCAAATGGATGTATCTAAGCTTGGG 58.936 40.000 9.86 1.84 0.00 4.12
1987 2357 5.912149 AATGGATGTATCTAAGCTTGGGA 57.088 39.130 9.86 7.81 0.00 4.37
1988 2358 4.689612 TGGATGTATCTAAGCTTGGGAC 57.310 45.455 9.86 8.87 0.00 4.46
1989 2359 4.037222 TGGATGTATCTAAGCTTGGGACA 58.963 43.478 9.86 14.22 0.00 4.02
2048 2418 4.062293 TGTACATTTGGAAGACGACAAGG 58.938 43.478 0.00 0.00 0.00 3.61
2070 2441 0.179018 ACCAACTTGTGCTGACCTCC 60.179 55.000 0.00 0.00 0.00 4.30
2079 2450 0.840288 TGCTGACCTCCCTGCCTTTA 60.840 55.000 0.00 0.00 0.00 1.85
2080 2451 0.548510 GCTGACCTCCCTGCCTTTAT 59.451 55.000 0.00 0.00 0.00 1.40
2082 2453 2.924421 CTGACCTCCCTGCCTTTATTC 58.076 52.381 0.00 0.00 0.00 1.75
2083 2454 2.507471 CTGACCTCCCTGCCTTTATTCT 59.493 50.000 0.00 0.00 0.00 2.40
2084 2455 2.505819 TGACCTCCCTGCCTTTATTCTC 59.494 50.000 0.00 0.00 0.00 2.87
2085 2456 2.774809 GACCTCCCTGCCTTTATTCTCT 59.225 50.000 0.00 0.00 0.00 3.10
2087 2458 3.054065 ACCTCCCTGCCTTTATTCTCTTG 60.054 47.826 0.00 0.00 0.00 3.02
2088 2459 2.948315 CTCCCTGCCTTTATTCTCTTGC 59.052 50.000 0.00 0.00 0.00 4.01
2089 2460 2.027385 CCCTGCCTTTATTCTCTTGCC 58.973 52.381 0.00 0.00 0.00 4.52
2093 2466 3.267483 TGCCTTTATTCTCTTGCCGTAC 58.733 45.455 0.00 0.00 0.00 3.67
2209 2582 3.970610 CACGCTGTTCAAATCTCACAAAG 59.029 43.478 0.00 0.00 0.00 2.77
2217 2590 3.138304 CAAATCTCACAAAGTCGGTCCA 58.862 45.455 0.00 0.00 0.00 4.02
2260 2633 3.091545 GTCAAGGGCCTCATCAATTTCA 58.908 45.455 6.46 0.00 0.00 2.69
2294 2667 0.947244 CTGAACAGCAAAGAAGGCGT 59.053 50.000 0.00 0.00 36.08 5.68
2302 2675 1.247567 CAAAGAAGGCGTGGAACCAT 58.752 50.000 0.00 0.00 0.00 3.55
2308 2681 2.112815 GGCGTGGAACCATACAGCC 61.113 63.158 13.30 13.30 36.08 4.85
2352 2725 1.153329 ACAGTTTGCGTTCCGGACA 60.153 52.632 1.83 0.00 0.00 4.02
2476 2852 1.070914 TGATGTACCTGGCAAACGTCA 59.929 47.619 12.66 12.66 36.94 4.35
2482 2858 2.954753 CTGGCAAACGTCAGCGACC 61.955 63.158 6.16 0.00 42.00 4.79
2560 2936 5.708736 TCCAAGCATCCAAGAGGTAATTA 57.291 39.130 0.00 0.00 35.89 1.40
2662 3038 1.607225 ATGGGTTCCCAGCTTCCATA 58.393 50.000 16.04 0.00 39.73 2.74
2964 3343 1.521681 GGACTCGAGATTTGGGGCG 60.522 63.158 21.68 0.00 0.00 6.13
3111 3490 4.447290 GGATTCAGCTAGAAGGGTTTCTC 58.553 47.826 0.00 0.00 42.60 2.87
3272 3658 4.021544 GGATGTAGAGAAGCCATGGTAGAG 60.022 50.000 14.67 0.00 0.00 2.43
3278 3664 0.179936 AAGCCATGGTAGAGCAGAGC 59.820 55.000 14.67 0.00 0.00 4.09
3391 3777 9.590451 CATTGTCTAATGCTATGATTGGTTTTT 57.410 29.630 0.00 0.00 37.47 1.94
3483 3874 9.180678 GTGTACCATTTTTGTATTTGAGTCAAG 57.819 33.333 5.56 0.00 0.00 3.02
3500 3891 2.297033 TCAAGCCTGAAACTGAAATGGC 59.703 45.455 0.00 0.00 40.54 4.40
3503 3894 1.269448 GCCTGAAACTGAAATGGCGAA 59.731 47.619 0.00 0.00 0.00 4.70
3505 3896 2.813754 CCTGAAACTGAAATGGCGAAGA 59.186 45.455 0.00 0.00 0.00 2.87
3506 3897 3.441572 CCTGAAACTGAAATGGCGAAGAT 59.558 43.478 0.00 0.00 0.00 2.40
3507 3898 4.409570 CTGAAACTGAAATGGCGAAGATG 58.590 43.478 0.00 0.00 0.00 2.90
3508 3899 3.191162 TGAAACTGAAATGGCGAAGATGG 59.809 43.478 0.00 0.00 0.00 3.51
3509 3900 1.755179 ACTGAAATGGCGAAGATGGG 58.245 50.000 0.00 0.00 0.00 4.00
3510 3901 1.004745 ACTGAAATGGCGAAGATGGGT 59.995 47.619 0.00 0.00 0.00 4.51
3511 3902 2.094675 CTGAAATGGCGAAGATGGGTT 58.905 47.619 0.00 0.00 0.00 4.11
3599 3995 5.051816 ACAAGTTCGTCGTAAAGATTTGGA 58.948 37.500 0.00 0.00 0.00 3.53
3641 4044 3.675228 GCAGCAGAATCCACTGGAAATTG 60.675 47.826 0.66 2.15 38.22 2.32
3656 4062 4.009675 GGAAATTGCAGAAATTTTCCCCC 58.990 43.478 0.24 0.00 46.29 5.40
3720 4127 7.007367 CACAACCAAAGAAATCATAATCGAACG 59.993 37.037 0.00 0.00 0.00 3.95
4111 4518 3.306989 CCTTCTGGTATGTCTGCAAGTCA 60.307 47.826 0.00 0.00 36.21 3.41
4151 4558 4.080356 CACTGGGAATTGAGGAACTATGGA 60.080 45.833 0.00 0.00 41.55 3.41
4168 4575 6.476378 ACTATGGAAGCACAACAGAAATACT 58.524 36.000 0.00 0.00 0.00 2.12
4171 4578 4.756642 TGGAAGCACAACAGAAATACTCAG 59.243 41.667 0.00 0.00 0.00 3.35
4182 4589 5.964477 ACAGAAATACTCAGGAGGTGGAATA 59.036 40.000 0.83 0.00 0.00 1.75
4195 4602 7.941238 CAGGAGGTGGAATAATTCATCAGTTAT 59.059 37.037 0.00 0.00 0.00 1.89
4261 4668 2.165319 ACAGCTTCAGGTAAACGTCC 57.835 50.000 0.00 0.00 0.00 4.79
4264 4671 2.223377 CAGCTTCAGGTAAACGTCCAAC 59.777 50.000 0.00 0.00 0.00 3.77
4268 4675 4.151867 GCTTCAGGTAAACGTCCAACTTAG 59.848 45.833 0.00 0.00 0.00 2.18
4273 4681 2.265589 AAACGTCCAACTTAGTGGGG 57.734 50.000 5.87 1.38 39.34 4.96
4309 4717 2.009774 CACCACTAGGCATCCTTTTCG 58.990 52.381 0.00 0.00 39.06 3.46
4373 4781 2.376518 TCTGAAGATCAACCAAAGGCCT 59.623 45.455 0.00 0.00 0.00 5.19
4374 4782 3.160269 CTGAAGATCAACCAAAGGCCTT 58.840 45.455 13.78 13.78 0.00 4.35
4431 4839 7.070946 CCCTCCTCATATATGCTTCTATGATGT 59.929 40.741 7.92 0.00 34.69 3.06
4434 4842 9.662947 TCCTCATATATGCTTCTATGATGTTTG 57.337 33.333 7.92 0.00 34.69 2.93
4579 4988 5.140454 ACCAACCTTTCAAGAATAAGCAGT 58.860 37.500 0.00 0.00 0.00 4.40
4707 5116 2.361610 AAATGGAGGGCGGTGCAG 60.362 61.111 0.00 0.00 0.00 4.41
4865 5274 6.093771 GCTAATATTTGATGGCTGATGAGGAG 59.906 42.308 0.77 0.00 0.00 3.69
4900 5309 0.402504 AAATACCCGAGGCAACCACA 59.597 50.000 0.00 0.00 37.17 4.17
4951 5360 1.154197 CAGCATCCATATCTGCACCG 58.846 55.000 4.72 0.00 40.88 4.94
4972 5381 5.221342 ACCGCTGTTTTTCATAAATCCACAA 60.221 36.000 0.00 0.00 0.00 3.33
4993 5404 3.198409 TGCACCTGAGCATATACCAAG 57.802 47.619 0.00 0.00 40.11 3.61
4994 5405 1.876156 GCACCTGAGCATATACCAAGC 59.124 52.381 0.00 0.00 0.00 4.01
4995 5406 2.498167 CACCTGAGCATATACCAAGCC 58.502 52.381 0.00 0.00 0.00 4.35
4996 5407 2.126882 ACCTGAGCATATACCAAGCCA 58.873 47.619 0.00 0.00 0.00 4.75
4997 5408 2.713167 ACCTGAGCATATACCAAGCCAT 59.287 45.455 0.00 0.00 0.00 4.40
5008 5420 3.377253 ACCAAGCCATCATCATTCACT 57.623 42.857 0.00 0.00 0.00 3.41
5010 5422 2.289820 CCAAGCCATCATCATTCACTCG 59.710 50.000 0.00 0.00 0.00 4.18
5011 5423 2.251409 AGCCATCATCATTCACTCGG 57.749 50.000 0.00 0.00 0.00 4.63
5014 5426 2.547211 GCCATCATCATTCACTCGGAAG 59.453 50.000 0.00 0.00 39.30 3.46
5016 5429 4.445453 CCATCATCATTCACTCGGAAGAA 58.555 43.478 0.00 0.00 41.32 2.52
5019 5432 6.039047 CCATCATCATTCACTCGGAAGAAAAT 59.961 38.462 0.00 0.00 41.32 1.82
5021 5434 7.076842 TCATCATTCACTCGGAAGAAAATTC 57.923 36.000 0.00 0.00 41.32 2.17
5022 5435 5.880054 TCATTCACTCGGAAGAAAATTCC 57.120 39.130 0.00 0.00 41.32 3.01
5024 5437 5.945784 TCATTCACTCGGAAGAAAATTCCAT 59.054 36.000 7.38 0.00 41.32 3.41
5031 5445 7.698130 CACTCGGAAGAAAATTCCATGAATTAC 59.302 37.037 7.38 1.86 38.97 1.89
5098 5513 9.780186 GATAAGAGGTGGTAATAAGCTATTTGT 57.220 33.333 0.00 0.00 30.07 2.83
5100 5515 8.879427 AAGAGGTGGTAATAAGCTATTTGTTT 57.121 30.769 0.00 0.00 0.00 2.83
5101 5516 9.969001 AAGAGGTGGTAATAAGCTATTTGTTTA 57.031 29.630 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.698506 ACATCACATCTCATGAAACTTGAAT 57.301 32.000 0.00 0.00 0.00 2.57
44 45 7.237871 GCAACACGTTACATTACATTACATCA 58.762 34.615 0.00 0.00 0.00 3.07
45 46 6.406896 CGCAACACGTTACATTACATTACATC 59.593 38.462 0.00 0.00 36.87 3.06
63 64 1.843753 CGAGAAAACAAACCGCAACAC 59.156 47.619 0.00 0.00 0.00 3.32
64 65 1.795889 GCGAGAAAACAAACCGCAACA 60.796 47.619 0.00 0.00 44.55 3.33
69 70 1.656429 CGACTGCGAGAAAACAAACCG 60.656 52.381 0.00 0.00 40.82 4.44
90 91 1.625818 AGAGAACGCAAGGGAACTGAT 59.374 47.619 0.00 0.00 42.68 2.90
229 232 6.366340 TCCCTCTGTATCGAAATCTAAGACT 58.634 40.000 0.00 0.00 0.00 3.24
231 234 6.366340 ACTCCCTCTGTATCGAAATCTAAGA 58.634 40.000 0.00 0.00 0.00 2.10
278 281 6.469782 ACAAGTCAATGGTTTCTGAAACAT 57.530 33.333 28.53 18.85 44.95 2.71
318 321 2.414138 GACCAATAAACCCGAACAGACG 59.586 50.000 0.00 0.00 0.00 4.18
319 322 2.745821 GGACCAATAAACCCGAACAGAC 59.254 50.000 0.00 0.00 0.00 3.51
320 323 2.290450 GGGACCAATAAACCCGAACAGA 60.290 50.000 0.00 0.00 34.03 3.41
321 324 2.089201 GGGACCAATAAACCCGAACAG 58.911 52.381 0.00 0.00 34.03 3.16
340 343 1.381735 GGGCAGAAAATGGGAGGGG 60.382 63.158 0.00 0.00 0.00 4.79
343 346 3.986996 AAATTGGGCAGAAAATGGGAG 57.013 42.857 0.00 0.00 0.00 4.30
346 349 5.247084 TGATCAAAATTGGGCAGAAAATGG 58.753 37.500 0.00 0.00 0.00 3.16
347 350 6.995511 ATGATCAAAATTGGGCAGAAAATG 57.004 33.333 0.00 0.00 0.00 2.32
348 351 9.689501 ATTTATGATCAAAATTGGGCAGAAAAT 57.310 25.926 0.00 8.37 31.85 1.82
349 352 9.517868 AATTTATGATCAAAATTGGGCAGAAAA 57.482 25.926 19.12 7.12 35.69 2.29
350 353 9.517868 AAATTTATGATCAAAATTGGGCAGAAA 57.482 25.926 19.90 9.56 36.81 2.52
351 354 8.948145 CAAATTTATGATCAAAATTGGGCAGAA 58.052 29.630 19.90 0.00 36.81 3.02
352 355 8.319881 TCAAATTTATGATCAAAATTGGGCAGA 58.680 29.630 19.90 13.72 36.81 4.26
353 356 8.392612 GTCAAATTTATGATCAAAATTGGGCAG 58.607 33.333 19.39 12.52 36.81 4.85
354 357 8.102047 AGTCAAATTTATGATCAAAATTGGGCA 58.898 29.630 22.80 10.07 35.30 5.36
355 358 8.496707 AGTCAAATTTATGATCAAAATTGGGC 57.503 30.769 19.90 18.92 36.81 5.36
432 550 9.673454 AAAAATAGTATCGTTCAAACCTGTTTC 57.327 29.630 0.00 0.00 0.00 2.78
481 599 9.255304 TCAAACTTTGGCATTTGATTTAACTAC 57.745 29.630 9.96 0.00 39.34 2.73
486 604 5.994668 GGGTCAAACTTTGGCATTTGATTTA 59.005 36.000 15.49 0.00 44.36 1.40
503 621 5.297569 CCCTTTTGTATTTTGGGGTCAAA 57.702 39.130 0.00 0.00 40.71 2.69
511 629 9.325198 GGATTTATTAGCCCCTTTTGTATTTTG 57.675 33.333 0.00 0.00 0.00 2.44
515 633 7.591821 TCAGGATTTATTAGCCCCTTTTGTAT 58.408 34.615 0.00 0.00 0.00 2.29
516 634 6.975949 TCAGGATTTATTAGCCCCTTTTGTA 58.024 36.000 0.00 0.00 0.00 2.41
517 635 5.837829 TCAGGATTTATTAGCCCCTTTTGT 58.162 37.500 0.00 0.00 0.00 2.83
518 636 6.239402 CCATCAGGATTTATTAGCCCCTTTTG 60.239 42.308 0.00 0.00 36.89 2.44
523 641 4.593956 CTCCATCAGGATTTATTAGCCCC 58.406 47.826 0.00 0.00 44.70 5.80
541 659 4.228824 AGTACTTCTTTGTACCACCTCCA 58.771 43.478 0.00 0.00 42.58 3.86
548 666 3.119209 CGGAGGGAGTACTTCTTTGTACC 60.119 52.174 0.01 0.00 42.58 3.34
563 681 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
593 711 9.485591 CGTATGTTGTAGTCCATTTAAAATGTC 57.514 33.333 0.00 0.00 0.00 3.06
594 712 8.455682 CCGTATGTTGTAGTCCATTTAAAATGT 58.544 33.333 0.00 0.00 0.00 2.71
595 713 8.670135 TCCGTATGTTGTAGTCCATTTAAAATG 58.330 33.333 0.00 0.00 0.00 2.32
597 715 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
598 716 7.201661 GCATCCGTATGTTGTAGTCCATTTAAA 60.202 37.037 0.00 0.00 35.38 1.52
599 717 6.259167 GCATCCGTATGTTGTAGTCCATTTAA 59.741 38.462 0.00 0.00 35.38 1.52
602 720 4.127171 GCATCCGTATGTTGTAGTCCATT 58.873 43.478 0.00 0.00 35.38 3.16
603 721 3.133901 TGCATCCGTATGTTGTAGTCCAT 59.866 43.478 0.00 0.00 35.38 3.41
604 722 2.498078 TGCATCCGTATGTTGTAGTCCA 59.502 45.455 0.00 0.00 35.38 4.02
605 723 3.173668 TGCATCCGTATGTTGTAGTCC 57.826 47.619 0.00 0.00 35.38 3.85
606 724 4.119862 ACATGCATCCGTATGTTGTAGTC 58.880 43.478 0.00 0.00 44.98 2.59
608 726 5.402568 GTCTACATGCATCCGTATGTTGTAG 59.597 44.000 18.50 18.50 44.98 2.74
609 727 5.163499 TGTCTACATGCATCCGTATGTTGTA 60.163 40.000 0.00 0.00 44.98 2.41
611 729 4.119136 TGTCTACATGCATCCGTATGTTG 58.881 43.478 0.00 0.85 44.98 3.33
612 730 4.400529 TGTCTACATGCATCCGTATGTT 57.599 40.909 0.00 0.00 44.98 2.71
615 733 5.984695 AGTATGTCTACATGCATCCGTAT 57.015 39.130 12.71 0.00 40.71 3.06
616 734 5.784578 AAGTATGTCTACATGCATCCGTA 57.215 39.130 12.71 0.00 40.71 4.02
617 735 4.672587 AAGTATGTCTACATGCATCCGT 57.327 40.909 12.71 0.00 40.71 4.69
618 736 6.447162 TCTAAAGTATGTCTACATGCATCCG 58.553 40.000 12.71 0.00 40.71 4.18
619 737 7.437748 ACTCTAAAGTATGTCTACATGCATCC 58.562 38.462 12.71 0.00 40.71 3.51
638 756 9.890629 AGCAAAATGAGTGAATGTATACTCTAA 57.109 29.630 4.17 0.00 42.86 2.10
639 757 9.534565 GAGCAAAATGAGTGAATGTATACTCTA 57.465 33.333 4.17 0.00 42.86 2.43
640 758 7.497249 GGAGCAAAATGAGTGAATGTATACTCT 59.503 37.037 4.17 0.00 42.86 3.24
641 759 7.517417 CGGAGCAAAATGAGTGAATGTATACTC 60.517 40.741 4.17 0.00 42.77 2.59
642 760 6.258727 CGGAGCAAAATGAGTGAATGTATACT 59.741 38.462 4.17 0.00 0.00 2.12
643 761 6.037172 ACGGAGCAAAATGAGTGAATGTATAC 59.963 38.462 0.00 0.00 0.00 1.47
644 762 6.112734 ACGGAGCAAAATGAGTGAATGTATA 58.887 36.000 0.00 0.00 0.00 1.47
645 763 4.943705 ACGGAGCAAAATGAGTGAATGTAT 59.056 37.500 0.00 0.00 0.00 2.29
646 764 4.323417 ACGGAGCAAAATGAGTGAATGTA 58.677 39.130 0.00 0.00 0.00 2.29
647 765 3.149196 ACGGAGCAAAATGAGTGAATGT 58.851 40.909 0.00 0.00 0.00 2.71
648 766 3.837213 ACGGAGCAAAATGAGTGAATG 57.163 42.857 0.00 0.00 0.00 2.67
649 767 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
650 768 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
651 769 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
652 770 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
653 771 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
654 772 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
655 773 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
656 774 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
657 775 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
658 776 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
659 777 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
660 778 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
661 779 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
662 780 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
663 781 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
664 782 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
665 783 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
666 784 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
667 785 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
668 786 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
669 787 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
670 788 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
671 789 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
672 790 9.273016 CTTTTTAGAGATTCCAACAAGTGACTA 57.727 33.333 0.00 0.00 0.00 2.59
673 791 7.993183 TCTTTTTAGAGATTCCAACAAGTGACT 59.007 33.333 0.00 0.00 0.00 3.41
674 792 8.070769 GTCTTTTTAGAGATTCCAACAAGTGAC 58.929 37.037 0.00 0.00 0.00 3.67
675 793 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
676 794 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
677 795 8.753497 AAGTCTTTTTAGAGATTCCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
693 811 9.025041 CCTCTGTTCCCAAATATAAGTCTTTTT 57.975 33.333 0.00 0.00 0.00 1.94
694 812 7.615757 CCCTCTGTTCCCAAATATAAGTCTTTT 59.384 37.037 0.00 0.00 0.00 2.27
695 813 7.036863 TCCCTCTGTTCCCAAATATAAGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
696 814 6.447084 TCCCTCTGTTCCCAAATATAAGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
697 815 5.970640 TCCCTCTGTTCCCAAATATAAGTCT 59.029 40.000 0.00 0.00 0.00 3.24
698 816 6.126739 ACTCCCTCTGTTCCCAAATATAAGTC 60.127 42.308 0.00 0.00 0.00 3.01
699 817 5.731678 ACTCCCTCTGTTCCCAAATATAAGT 59.268 40.000 0.00 0.00 0.00 2.24
708 826 2.576191 CCAAATACTCCCTCTGTTCCCA 59.424 50.000 0.00 0.00 0.00 4.37
709 827 2.576648 ACCAAATACTCCCTCTGTTCCC 59.423 50.000 0.00 0.00 0.00 3.97
711 829 6.371825 CACTTAACCAAATACTCCCTCTGTTC 59.628 42.308 0.00 0.00 0.00 3.18
742 860 8.534496 AGCCAGCTATTTCAGTGAAATTTTAAT 58.466 29.630 30.62 13.16 41.64 1.40
755 873 0.806102 GACGCGAGCCAGCTATTTCA 60.806 55.000 15.93 0.00 34.40 2.69
781 899 3.132111 TGAGAGCGCCTGTTGAATACATA 59.868 43.478 2.29 0.00 35.85 2.29
783 901 1.275010 TGAGAGCGCCTGTTGAATACA 59.725 47.619 2.29 0.00 34.95 2.29
794 1082 2.609244 GGAGTCAAGATATGAGAGCGCC 60.609 54.545 2.29 0.00 39.19 6.53
803 1091 7.885399 AGCAAGTTTTGTAAGGAGTCAAGATAT 59.115 33.333 0.00 0.00 0.00 1.63
807 1095 5.757850 AGCAAGTTTTGTAAGGAGTCAAG 57.242 39.130 0.00 0.00 0.00 3.02
861 1157 2.629017 ATCCCTGGCAGGAAAAACAT 57.371 45.000 34.84 12.75 40.04 2.71
866 1162 7.560796 TTTTTATAAAATCCCTGGCAGGAAA 57.439 32.000 34.84 21.84 40.04 3.13
891 1196 0.694771 TGGGCTTCAGCATCAAGACT 59.305 50.000 0.30 0.00 44.36 3.24
894 1199 1.093159 GTCTGGGCTTCAGCATCAAG 58.907 55.000 0.30 0.00 43.06 3.02
921 1226 2.188469 GCCGGGCCGAGATACAAA 59.812 61.111 30.79 0.00 0.00 2.83
966 1276 4.796231 TCGAGCCTCGCCGCTTTC 62.796 66.667 9.77 0.00 39.87 2.62
980 1290 3.998672 GCCTCGTGGTGGGTTCGA 61.999 66.667 5.26 0.00 35.27 3.71
982 1292 4.717313 GGGCCTCGTGGTGGGTTC 62.717 72.222 0.84 0.00 35.27 3.62
986 1296 3.801068 TTTTGGGGCCTCGTGGTGG 62.801 63.158 0.84 0.00 35.27 4.61
987 1297 2.203422 TTTTGGGGCCTCGTGGTG 60.203 61.111 0.84 0.00 35.27 4.17
988 1298 2.115266 CTTTTGGGGCCTCGTGGT 59.885 61.111 0.84 0.00 35.27 4.16
989 1299 3.373565 GCTTTTGGGGCCTCGTGG 61.374 66.667 0.84 0.00 0.00 4.94
990 1300 2.597217 TGCTTTTGGGGCCTCGTG 60.597 61.111 0.84 0.00 0.00 4.35
991 1301 2.282462 CTGCTTTTGGGGCCTCGT 60.282 61.111 0.84 0.00 0.00 4.18
992 1302 3.752339 GCTGCTTTTGGGGCCTCG 61.752 66.667 0.84 0.00 0.00 4.63
993 1303 3.752339 CGCTGCTTTTGGGGCCTC 61.752 66.667 0.84 0.00 0.00 4.70
996 1306 2.376228 TTTTCCGCTGCTTTTGGGGC 62.376 55.000 0.00 0.00 37.43 5.80
997 1307 0.319813 CTTTTCCGCTGCTTTTGGGG 60.320 55.000 0.00 0.00 38.66 4.96
998 1308 0.319813 CCTTTTCCGCTGCTTTTGGG 60.320 55.000 0.00 0.00 0.00 4.12
999 1309 0.673437 TCCTTTTCCGCTGCTTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
1000 1310 2.507339 TTCCTTTTCCGCTGCTTTTG 57.493 45.000 0.00 0.00 0.00 2.44
1001 1311 3.457234 CTTTTCCTTTTCCGCTGCTTTT 58.543 40.909 0.00 0.00 0.00 2.27
1125 1438 2.625737 CACCTTCTGTATGTCCTGCAG 58.374 52.381 6.78 6.78 38.81 4.41
1175 1501 2.107141 CGTCCATCCTTCCGCTCC 59.893 66.667 0.00 0.00 0.00 4.70
1177 1503 4.514577 CGCGTCCATCCTTCCGCT 62.515 66.667 0.00 0.00 43.70 5.52
1181 1507 4.814294 ACGCCGCGTCCATCCTTC 62.814 66.667 13.85 0.00 33.69 3.46
1305 1631 4.783621 GGCGAGTGGGCATGCTCA 62.784 66.667 18.52 18.52 41.77 4.26
1316 1642 3.126225 GACGAGAGGACGGCGAGT 61.126 66.667 16.62 0.00 37.61 4.18
1332 1663 0.457035 CCCTCGAATTTCGTACGGGA 59.543 55.000 25.29 4.61 41.61 5.14
1343 1674 0.609131 CAGGCCACAAACCCTCGAAT 60.609 55.000 5.01 0.00 0.00 3.34
1345 1676 2.429930 CAGGCCACAAACCCTCGA 59.570 61.111 5.01 0.00 0.00 4.04
1461 1792 2.803203 CAGGGCATGGTCATTCCTG 58.197 57.895 12.51 12.51 38.96 3.86
1475 1806 0.833287 ACACTATAGGCAGCACAGGG 59.167 55.000 4.43 0.00 0.00 4.45
1505 1836 1.078214 CGGCAATTCAGCTCCCTCA 60.078 57.895 0.00 0.00 34.17 3.86
1543 1874 6.336566 TGAGTAGATTCACATCTGAAGAAGC 58.663 40.000 0.00 0.00 40.28 3.86
1557 1888 7.155328 CACCAATACCCACTATGAGTAGATTC 58.845 42.308 0.00 0.00 0.00 2.52
1574 1905 1.272212 CCTGGTTTGTGCCACCAATAC 59.728 52.381 0.00 0.00 43.96 1.89
1577 1908 1.760086 CCCTGGTTTGTGCCACCAA 60.760 57.895 0.00 0.00 43.96 3.67
1583 1914 1.202348 GTTATCTGCCCTGGTTTGTGC 59.798 52.381 0.00 0.00 0.00 4.57
1596 1935 2.019984 GCCTCCTTTGCAGGTTATCTG 58.980 52.381 0.00 0.00 46.03 2.90
1625 1964 1.549203 GGTCAGTGGTCAATGCCATT 58.451 50.000 0.18 0.00 41.08 3.16
1632 1972 1.745890 CTGGTCGGTCAGTGGTCAA 59.254 57.895 0.00 0.00 0.00 3.18
1642 1982 1.690219 GATCATCAGGGCTGGTCGGT 61.690 60.000 0.00 0.00 0.00 4.69
1651 1991 6.531923 ACATAATCTTCACAGATCATCAGGG 58.468 40.000 0.00 0.00 39.00 4.45
1657 1997 9.306777 AGAGCTATACATAATCTTCACAGATCA 57.693 33.333 0.00 0.00 39.00 2.92
1664 2004 9.698309 GCAAGTAAGAGCTATACATAATCTTCA 57.302 33.333 10.76 0.00 32.69 3.02
1674 2014 6.969828 AGTTTGTGCAAGTAAGAGCTATAC 57.030 37.500 0.00 0.00 0.00 1.47
1685 2025 3.947196 TCATCAGACAAGTTTGTGCAAGT 59.053 39.130 1.62 0.00 42.43 3.16
1687 2027 4.823442 AGATCATCAGACAAGTTTGTGCAA 59.177 37.500 1.62 0.00 42.43 4.08
1708 2048 8.456471 CAATTCATTTTTACAGATCAGCAGAGA 58.544 33.333 0.00 0.00 0.00 3.10
1709 2049 8.456471 TCAATTCATTTTTACAGATCAGCAGAG 58.544 33.333 0.00 0.00 0.00 3.35
1722 2062 7.874016 AGCAGCAAACAGATCAATTCATTTTTA 59.126 29.630 0.00 0.00 0.00 1.52
1728 2068 5.005740 ACTAGCAGCAAACAGATCAATTCA 58.994 37.500 0.00 0.00 0.00 2.57
1733 2073 3.008375 AGGAACTAGCAGCAAACAGATCA 59.992 43.478 0.00 0.00 36.02 2.92
1737 2077 3.126000 GCTAAGGAACTAGCAGCAAACAG 59.874 47.826 0.00 0.00 38.49 3.16
1753 2101 3.763897 ACACTTTATTTGCCAGGCTAAGG 59.236 43.478 14.15 6.26 0.00 2.69
1764 2112 8.664798 TCCGATGTAATTGAGACACTTTATTTG 58.335 33.333 0.00 0.00 0.00 2.32
1768 2116 5.810587 GCTCCGATGTAATTGAGACACTTTA 59.189 40.000 0.00 0.00 29.88 1.85
1790 2138 4.787280 CCCCAGGGGTCTCGAGCT 62.787 72.222 18.09 0.00 38.25 4.09
1792 2140 4.787280 AGCCCCAGGGGTCTCGAG 62.787 72.222 27.04 5.93 46.51 4.04
1803 2164 2.520982 CGGGTATCTCGAGCCCCA 60.521 66.667 25.07 4.96 39.22 4.96
1856 2226 2.158385 TGATAACCAACTTTGTGCCCCT 60.158 45.455 0.00 0.00 0.00 4.79
1864 2234 5.777732 TGCTACCCAATTGATAACCAACTTT 59.222 36.000 7.12 0.00 37.63 2.66
1874 2244 1.285962 AGGCTGTGCTACCCAATTGAT 59.714 47.619 7.12 0.00 0.00 2.57
1900 2270 6.493115 TGCCTATGTTCAAAGGAAATGAGAAA 59.507 34.615 0.00 0.00 34.58 2.52
1934 2304 1.534717 TTTTCCGGACGGAGGGAGT 60.535 57.895 13.64 0.00 46.06 3.85
1935 2305 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
1936 2306 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
1937 2307 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
1938 2308 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
1939 2309 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
1940 2310 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
1941 2311 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
1942 2312 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
1943 2313 0.250770 AGGGACAAGCTTTTCCGGAC 60.251 55.000 22.30 11.02 32.00 4.79
1944 2314 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.00 32.00 5.14
1945 2315 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
1946 2316 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
1947 2317 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
1948 2318 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
1949 2319 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
1950 2320 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
1951 2321 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
1952 2322 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1953 2323 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1954 2324 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
1955 2325 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
1956 2326 6.688922 GCTTAGATACATCCATTTGAGGGACA 60.689 42.308 0.00 0.00 37.23 4.02
1957 2327 5.703130 GCTTAGATACATCCATTTGAGGGAC 59.297 44.000 0.00 0.00 37.23 4.46
1958 2328 5.608437 AGCTTAGATACATCCATTTGAGGGA 59.392 40.000 0.00 0.00 39.14 4.20
1959 2329 5.874093 AGCTTAGATACATCCATTTGAGGG 58.126 41.667 0.00 0.00 0.00 4.30
1960 2330 6.206243 CCAAGCTTAGATACATCCATTTGAGG 59.794 42.308 0.00 0.00 0.00 3.86
1961 2331 6.206243 CCCAAGCTTAGATACATCCATTTGAG 59.794 42.308 0.00 0.00 0.00 3.02
1962 2332 6.064060 CCCAAGCTTAGATACATCCATTTGA 58.936 40.000 0.00 0.00 0.00 2.69
1963 2333 6.016777 GTCCCAAGCTTAGATACATCCATTTG 60.017 42.308 0.00 0.00 0.00 2.32
1964 2334 6.064717 GTCCCAAGCTTAGATACATCCATTT 58.935 40.000 0.00 0.00 0.00 2.32
1965 2335 5.132648 TGTCCCAAGCTTAGATACATCCATT 59.867 40.000 0.00 0.00 0.00 3.16
1966 2336 4.660303 TGTCCCAAGCTTAGATACATCCAT 59.340 41.667 0.00 0.00 0.00 3.41
1967 2337 4.037222 TGTCCCAAGCTTAGATACATCCA 58.963 43.478 0.00 0.00 0.00 3.41
1968 2338 4.689612 TGTCCCAAGCTTAGATACATCC 57.310 45.455 0.00 0.00 0.00 3.51
1969 2339 5.675538 ACTTGTCCCAAGCTTAGATACATC 58.324 41.667 0.00 0.00 0.00 3.06
1970 2340 5.700402 ACTTGTCCCAAGCTTAGATACAT 57.300 39.130 0.00 0.00 0.00 2.29
1971 2341 5.499004 AACTTGTCCCAAGCTTAGATACA 57.501 39.130 0.00 0.00 0.00 2.29
1972 2342 6.819397 AAAACTTGTCCCAAGCTTAGATAC 57.181 37.500 0.00 0.00 0.00 2.24
1993 2363 3.368739 GGATACTCCTTCCGTCCGAAAAA 60.369 47.826 0.00 0.00 32.53 1.94
1994 2364 2.167075 GGATACTCCTTCCGTCCGAAAA 59.833 50.000 0.00 0.00 32.53 2.29
1995 2365 1.753073 GGATACTCCTTCCGTCCGAAA 59.247 52.381 0.00 0.00 32.53 3.46
1996 2366 1.396653 GGATACTCCTTCCGTCCGAA 58.603 55.000 0.00 0.00 32.53 4.30
1997 2367 3.106738 GGATACTCCTTCCGTCCGA 57.893 57.895 0.00 0.00 32.53 4.55
2019 2389 7.604545 TGTCGTCTTCCAAATGTACATGAAATA 59.395 33.333 9.63 0.00 0.00 1.40
2048 2418 2.024414 AGGTCAGCACAAGTTGGTTTC 58.976 47.619 7.96 0.00 31.87 2.78
2062 2433 2.507471 AGAATAAAGGCAGGGAGGTCAG 59.493 50.000 0.00 0.00 0.00 3.51
2070 2441 1.672881 CGGCAAGAGAATAAAGGCAGG 59.327 52.381 0.00 0.00 0.00 4.85
2079 2450 1.001974 TGCAGTGTACGGCAAGAGAAT 59.998 47.619 7.36 0.00 43.64 2.40
2080 2451 0.391228 TGCAGTGTACGGCAAGAGAA 59.609 50.000 7.36 0.00 43.64 2.87
2082 2453 0.038251 TCTGCAGTGTACGGCAAGAG 60.038 55.000 14.67 0.80 45.68 2.85
2083 2454 0.608130 ATCTGCAGTGTACGGCAAGA 59.392 50.000 14.67 10.28 45.68 3.02
2084 2455 2.159240 TCTATCTGCAGTGTACGGCAAG 60.159 50.000 14.67 6.22 45.68 4.01
2085 2456 1.822371 TCTATCTGCAGTGTACGGCAA 59.178 47.619 14.67 3.62 45.68 4.52
2087 2458 1.134367 TGTCTATCTGCAGTGTACGGC 59.866 52.381 14.67 0.06 37.57 5.68
2088 2459 3.316588 AGATGTCTATCTGCAGTGTACGG 59.683 47.826 14.67 0.00 42.04 4.02
2089 2460 4.560136 AGATGTCTATCTGCAGTGTACG 57.440 45.455 14.67 0.00 42.04 3.67
2093 2466 4.270566 GCTTCAAGATGTCTATCTGCAGTG 59.729 45.833 14.67 5.73 42.80 3.66
2209 2582 0.672401 TCTTCCGCAAATGGACCGAC 60.672 55.000 0.00 0.00 37.89 4.79
2217 2590 0.678048 GGGTGCTCTCTTCCGCAAAT 60.678 55.000 0.00 0.00 37.97 2.32
2251 2624 0.625849 AGGGCTCCGGTGAAATTGAT 59.374 50.000 7.92 0.00 0.00 2.57
2260 2633 3.077556 CAGTGCTAGGGCTCCGGT 61.078 66.667 0.00 0.00 39.59 5.28
2294 2667 1.202099 TTCCGGGCTGTATGGTTCCA 61.202 55.000 0.00 0.00 0.00 3.53
2302 2675 1.004277 AGAATTTGCTTCCGGGCTGTA 59.996 47.619 0.00 0.00 34.11 2.74
2308 2681 0.819582 ATGCCAGAATTTGCTTCCGG 59.180 50.000 0.00 0.00 34.91 5.14
2482 2858 1.208358 CCGCAGCAACAGACATGTG 59.792 57.895 1.15 0.00 40.39 3.21
2560 2936 3.094572 CAGGTGCCAGGATGAAGAAATT 58.905 45.455 0.00 0.00 39.69 1.82
2586 2962 3.131577 AGCAGGCAAAATGATGGTGTATG 59.868 43.478 0.00 0.00 0.00 2.39
2619 2995 3.814316 GCCCCTGTCAAGAAAACTACCAT 60.814 47.826 0.00 0.00 0.00 3.55
2622 2998 2.858745 TGCCCCTGTCAAGAAAACTAC 58.141 47.619 0.00 0.00 0.00 2.73
2779 3155 4.704833 GCTGCTGGCTTCACCCGA 62.705 66.667 0.00 0.00 37.83 5.14
2781 3157 2.362120 ATGCTGCTGGCTTCACCC 60.362 61.111 0.00 0.00 42.39 4.61
2964 3343 1.186267 ACCTCTTCACCTCGACCCAC 61.186 60.000 0.00 0.00 0.00 4.61
3111 3490 4.274459 GCATTCTGGCCTAGATGTAAGTTG 59.726 45.833 3.32 0.00 34.80 3.16
3272 3658 5.557891 ATGATTGTTTCTACTTGCTCTGC 57.442 39.130 0.00 0.00 0.00 4.26
3330 3716 6.540189 ACAAAACCTATCATAGCATCAGACAC 59.460 38.462 0.00 0.00 0.00 3.67
3334 3720 9.276590 TGATAACAAAACCTATCATAGCATCAG 57.723 33.333 0.00 0.00 31.17 2.90
3410 3796 7.338703 CACAGGGCAGCATAAGAATAATGATAT 59.661 37.037 0.00 0.00 0.00 1.63
3483 3874 0.881118 TCGCCATTTCAGTTTCAGGC 59.119 50.000 0.00 0.00 38.73 4.85
3500 3891 2.027561 TCCAAGTGGTAACCCATCTTCG 60.028 50.000 0.00 0.00 44.35 3.79
3503 3894 4.344104 CATTTCCAAGTGGTAACCCATCT 58.656 43.478 0.00 0.00 44.35 2.90
3505 3896 2.831526 GCATTTCCAAGTGGTAACCCAT 59.168 45.455 0.00 0.00 44.35 4.00
3506 3897 2.243810 GCATTTCCAAGTGGTAACCCA 58.756 47.619 0.00 0.00 38.87 4.51
3507 3898 2.243810 TGCATTTCCAAGTGGTAACCC 58.756 47.619 0.00 0.00 36.34 4.11
3508 3899 4.329462 TTTGCATTTCCAAGTGGTAACC 57.671 40.909 0.00 0.00 36.34 2.85
3569 3965 5.845953 TCTTTACGACGAACTTGTAACTACG 59.154 40.000 0.00 0.00 29.57 3.51
3599 3995 5.184864 GCTGCAGATGACATAGACTATAGGT 59.815 44.000 20.43 0.00 0.00 3.08
3641 4044 1.545841 AGTCGGGGGAAAATTTCTGC 58.454 50.000 5.65 0.00 0.00 4.26
3656 4062 4.260620 CCTTTTCTTGGTGTGTTGTAGTCG 60.261 45.833 0.00 0.00 0.00 4.18
3720 4127 3.190874 CAAGCTAGACTGGATCCGAAAC 58.809 50.000 7.39 0.00 0.00 2.78
3727 4134 0.179936 GCAGGCAAGCTAGACTGGAT 59.820 55.000 11.83 0.00 45.03 3.41
3733 4140 0.321671 AACTTCGCAGGCAAGCTAGA 59.678 50.000 0.00 0.00 0.00 2.43
4111 4518 4.218417 CCCAGTGCTAATTAAACAAGCTGT 59.782 41.667 0.00 0.00 37.16 4.40
4151 4558 4.973168 TCCTGAGTATTTCTGTTGTGCTT 58.027 39.130 0.00 0.00 0.00 3.91
4168 4575 5.429762 ACTGATGAATTATTCCACCTCCTGA 59.570 40.000 2.22 0.00 0.00 3.86
4171 4578 8.697507 AATAACTGATGAATTATTCCACCTCC 57.302 34.615 2.22 0.00 0.00 4.30
4208 4615 7.728981 AGCCTAGGATACAAAGCTTACTGTATA 59.271 37.037 19.16 7.55 38.55 1.47
4210 4617 5.897824 AGCCTAGGATACAAAGCTTACTGTA 59.102 40.000 14.75 12.25 34.06 2.74
4211 4618 4.717280 AGCCTAGGATACAAAGCTTACTGT 59.283 41.667 14.75 8.74 34.06 3.55
4212 4619 5.283457 AGCCTAGGATACAAAGCTTACTG 57.717 43.478 14.75 0.00 34.06 2.74
4213 4620 5.959583 AAGCCTAGGATACAAAGCTTACT 57.040 39.130 14.75 0.00 42.85 2.24
4214 4621 5.220873 GCAAAGCCTAGGATACAAAGCTTAC 60.221 44.000 14.75 0.00 43.54 2.34
4251 4658 3.069289 CCCACTAAGTTGGACGTTTACC 58.931 50.000 0.00 0.00 39.24 2.85
4252 4659 3.069289 CCCCACTAAGTTGGACGTTTAC 58.931 50.000 0.00 0.00 39.24 2.01
4253 4660 2.971330 TCCCCACTAAGTTGGACGTTTA 59.029 45.455 0.00 0.00 39.24 2.01
4257 4664 2.554370 TTTCCCCACTAAGTTGGACG 57.446 50.000 0.00 0.00 39.24 4.79
4261 4668 6.435904 TCCATTTACATTTCCCCACTAAGTTG 59.564 38.462 0.00 0.00 0.00 3.16
4264 4671 6.187682 AGTCCATTTACATTTCCCCACTAAG 58.812 40.000 0.00 0.00 0.00 2.18
4268 4675 4.157840 GTGAGTCCATTTACATTTCCCCAC 59.842 45.833 0.00 0.00 0.00 4.61
4309 4717 0.322546 ATGGAGCCTTGGGACGAAAC 60.323 55.000 0.00 0.00 0.00 2.78
4431 4839 2.340210 TTGCAGTAGCTGTCCACAAA 57.660 45.000 0.00 0.00 42.74 2.83
4434 4842 2.095567 CACATTTGCAGTAGCTGTCCAC 60.096 50.000 0.00 0.00 42.74 4.02
4707 5116 4.435425 TGGTATATGGCGACTTGTAACAC 58.565 43.478 0.00 0.00 0.00 3.32
4865 5274 5.278604 GGGTATTTTTGATGGTTATGACGC 58.721 41.667 0.00 0.00 0.00 5.19
4900 5309 7.962918 GTCGAGTACATACAGAAATGCAAATTT 59.037 33.333 0.00 0.00 0.00 1.82
4951 5360 6.147492 TGCATTGTGGATTTATGAAAAACAGC 59.853 34.615 0.00 0.00 0.00 4.40
4992 5403 1.764723 TCCGAGTGAATGATGATGGCT 59.235 47.619 0.00 0.00 0.00 4.75
4993 5404 2.245159 TCCGAGTGAATGATGATGGC 57.755 50.000 0.00 0.00 0.00 4.40
4994 5405 4.063998 TCTTCCGAGTGAATGATGATGG 57.936 45.455 0.00 0.00 31.06 3.51
4995 5406 6.426980 TTTTCTTCCGAGTGAATGATGATG 57.573 37.500 0.00 0.00 31.06 3.07
4996 5407 7.201767 GGAATTTTCTTCCGAGTGAATGATGAT 60.202 37.037 0.00 0.00 31.06 2.45
4997 5408 6.094048 GGAATTTTCTTCCGAGTGAATGATGA 59.906 38.462 0.00 0.00 31.06 2.92
5008 5420 7.695480 TGTAATTCATGGAATTTTCTTCCGA 57.305 32.000 9.24 0.00 41.64 4.55
5016 5429 9.902684 TGGCATATTTTGTAATTCATGGAATTT 57.097 25.926 9.24 0.00 41.64 1.82
5066 5481 8.773216 AGCTTATTACCACCTCTTATCTTCTTT 58.227 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.