Multiple sequence alignment - TraesCS7D01G528300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G528300 chr7D 100.000 4932 0 0 1497 6428 623527038 623531969 0.000000e+00 9108.0
1 TraesCS7D01G528300 chr7D 100.000 1069 0 0 1 1069 623525542 623526610 0.000000e+00 1975.0
2 TraesCS7D01G528300 chr7B 91.050 2190 146 18 1497 3643 721192099 721194281 0.000000e+00 2913.0
3 TraesCS7D01G528300 chr7B 87.733 1288 111 26 4740 6007 721195346 721196606 0.000000e+00 1459.0
4 TraesCS7D01G528300 chr7B 87.814 796 81 9 3641 4425 721194311 721195101 0.000000e+00 918.0
5 TraesCS7D01G528300 chr7B 81.419 888 94 42 1 871 721190552 721191385 0.000000e+00 660.0
6 TraesCS7D01G528300 chr7B 92.442 172 4 6 873 1043 721191463 721191626 3.000000e-58 237.0
7 TraesCS7D01G528300 chr7B 89.474 190 16 4 6061 6248 721196754 721196941 3.000000e-58 237.0
8 TraesCS7D01G528300 chr7A 90.604 1905 128 15 1497 3377 719559447 719561324 0.000000e+00 2479.0
9 TraesCS7D01G528300 chr7A 85.139 1292 135 30 4419 5686 719562447 719563705 0.000000e+00 1269.0
10 TraesCS7D01G528300 chr7A 84.879 787 69 28 3641 4417 719561660 719562406 0.000000e+00 749.0
11 TraesCS7D01G528300 chr7A 93.714 175 11 0 6228 6402 643187054 643186880 4.940000e-66 263.0
12 TraesCS7D01G528300 chr7A 90.909 198 5 5 873 1069 719558788 719558973 2.970000e-63 254.0
13 TraesCS7D01G528300 chr7A 94.737 57 3 0 559 615 719558542 719558598 8.880000e-14 89.8
14 TraesCS7D01G528300 chr2B 94.706 170 9 0 6224 6393 786251030 786251199 1.370000e-66 265.0
15 TraesCS7D01G528300 chr2B 83.333 90 13 1 5839 5926 736884097 736884186 1.490000e-11 82.4
16 TraesCS7D01G528300 chr6D 95.152 165 8 0 6228 6392 305359627 305359791 1.780000e-65 261.0
17 TraesCS7D01G528300 chr6B 94.152 171 10 0 6222 6392 343024226 343024396 1.780000e-65 261.0
18 TraesCS7D01G528300 chr4D 92.818 181 11 2 6217 6395 423909759 423909579 1.780000e-65 261.0
19 TraesCS7D01G528300 chr4D 93.605 172 11 0 6221 6392 243613265 243613436 2.300000e-64 257.0
20 TraesCS7D01G528300 chr4D 82.796 93 12 3 5839 5928 48700981 48700890 5.340000e-11 80.5
21 TraesCS7D01G528300 chr2A 88.636 220 15 4 5601 5810 759977302 759977521 6.390000e-65 259.0
22 TraesCS7D01G528300 chr1D 92.350 183 11 3 6220 6400 9218198 9218379 2.300000e-64 257.0
23 TraesCS7D01G528300 chr5D 93.143 175 10 2 6218 6392 69515118 69515290 8.270000e-64 255.0
24 TraesCS7D01G528300 chr6A 92.179 179 12 2 6215 6392 458217887 458217710 1.070000e-62 252.0
25 TraesCS7D01G528300 chr6A 83.721 86 14 0 5839 5924 66388077 66388162 1.490000e-11 82.4
26 TraesCS7D01G528300 chr6A 82.857 70 9 2 5841 5908 49589936 49589868 6.960000e-05 60.2
27 TraesCS7D01G528300 chr1B 83.784 74 10 1 5856 5927 186799351 186799424 1.160000e-07 69.4
28 TraesCS7D01G528300 chr1A 81.319 91 12 4 5842 5929 256821984 256822072 1.160000e-07 69.4
29 TraesCS7D01G528300 chr4A 91.667 48 4 0 5836 5883 708514139 708514186 4.160000e-07 67.6
30 TraesCS7D01G528300 chr3A 82.857 70 9 2 5841 5908 118402022 118401954 6.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G528300 chr7D 623525542 623531969 6427 False 5541.500000 9108 100.0000 1 6428 2 chr7D.!!$F1 6427
1 TraesCS7D01G528300 chr7B 721190552 721196941 6389 False 1070.666667 2913 88.3220 1 6248 6 chr7B.!!$F1 6247
2 TraesCS7D01G528300 chr7A 719558542 719563705 5163 False 968.160000 2479 89.2536 559 5686 5 chr7A.!!$F1 5127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 579 0.101399 AACGTGCGAAAAATGTGGCA 59.899 45.0 0.00 0.00 0.00 4.92 F
575 582 0.318955 GTGCGAAAAATGTGGCAGCT 60.319 50.0 0.00 0.00 35.85 4.24 F
615 622 0.390472 AAAGCTTCCGCCGAGAGAAG 60.390 55.0 0.00 0.00 41.99 2.85 F
622 629 0.671251 CCGCCGAGAGAAGCTTCTAT 59.329 55.0 28.53 25.83 37.73 1.98 F
2399 2588 0.610687 GCCTGCAAGTCTAGGTCAGT 59.389 55.0 0.00 0.00 36.44 3.41 F
2672 2861 1.106285 GGATGCTTGATCCCAACACC 58.894 55.0 0.00 0.00 44.79 4.16 F
4196 4521 0.108186 TCTGCGATAAGTGCACCCAG 60.108 55.0 14.63 10.50 37.44 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2364 0.107116 TGCCCGTTATTTACCCGCAT 60.107 50.0 0.00 0.0 0.00 4.73 R
2198 2365 0.745128 CTGCCCGTTATTTACCCGCA 60.745 55.0 0.00 0.0 0.00 5.69 R
2376 2565 1.127567 ACCTAGACTTGCAGGCCACA 61.128 55.0 5.01 0.0 35.14 4.17 R
2616 2805 0.381801 ACCTGCGTGAAGTGCAAAAG 59.618 50.0 0.00 0.0 42.70 2.27 R
3765 4086 0.308993 GTGCAGAGAACAAGCCACAC 59.691 55.0 0.00 0.0 0.00 3.82 R
4566 4956 0.464452 GGTCATACCCTCCACCTTCG 59.536 60.0 0.00 0.0 30.04 3.79 R
5434 5846 0.247736 ATCTGAGCGACTTGTGGGAC 59.752 55.0 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 239 6.474819 AAAGAACAAAACCAAAGAAAACCG 57.525 33.333 0.00 0.00 0.00 4.44
276 278 4.755411 AGAATAGCGAAACCGAGAATGAA 58.245 39.130 0.00 0.00 0.00 2.57
288 290 6.202516 ACCGAGAATGAAACAAAGAAAACA 57.797 33.333 0.00 0.00 0.00 2.83
289 291 6.626302 ACCGAGAATGAAACAAAGAAAACAA 58.374 32.000 0.00 0.00 0.00 2.83
385 387 5.972935 ACCAAATAAAAATAGGGAAAGCCG 58.027 37.500 0.00 0.00 33.83 5.52
391 393 7.907841 ATAAAAATAGGGAAAGCCGGTAAAT 57.092 32.000 1.90 0.00 33.83 1.40
399 401 5.047590 AGGGAAAGCCGGTAAATAAACAAAG 60.048 40.000 1.90 0.00 33.83 2.77
400 402 5.047872 GGGAAAGCCGGTAAATAAACAAAGA 60.048 40.000 1.90 0.00 33.83 2.52
417 419 8.973835 AAACAAAGAAAATTGAAGTACGACAA 57.026 26.923 9.42 9.42 34.38 3.18
419 421 9.581099 AACAAAGAAAATTGAAGTACGACAAAT 57.419 25.926 10.65 1.99 34.38 2.32
476 478 8.601845 AAATTAATGTACAACAAAGAAAGCCC 57.398 30.769 0.00 0.00 0.00 5.19
477 479 3.915437 ATGTACAACAAAGAAAGCCCG 57.085 42.857 0.00 0.00 0.00 6.13
480 482 3.314080 TGTACAACAAAGAAAGCCCGAAG 59.686 43.478 0.00 0.00 0.00 3.79
529 536 1.922570 AACATAGCGAACGAGCGAAT 58.077 45.000 5.91 0.00 43.00 3.34
539 546 0.450583 ACGAGCGAATAGAGCGACAA 59.549 50.000 0.00 0.00 40.04 3.18
543 550 0.840729 GCGAATAGAGCGACAACGAG 59.159 55.000 0.00 0.00 42.66 4.18
544 551 0.840729 CGAATAGAGCGACAACGAGC 59.159 55.000 0.00 0.00 42.66 5.03
557 564 2.061773 CAACGAGCAAGAGATCAACGT 58.938 47.619 0.00 0.00 0.00 3.99
570 577 2.112475 TCAACGTGCGAAAAATGTGG 57.888 45.000 0.00 0.00 0.00 4.17
572 579 0.101399 AACGTGCGAAAAATGTGGCA 59.899 45.000 0.00 0.00 0.00 4.92
575 582 0.318955 GTGCGAAAAATGTGGCAGCT 60.319 50.000 0.00 0.00 35.85 4.24
615 622 0.390472 AAAGCTTCCGCCGAGAGAAG 60.390 55.000 0.00 0.00 41.99 2.85
622 629 0.671251 CCGCCGAGAGAAGCTTCTAT 59.329 55.000 28.53 25.83 37.73 1.98
626 633 2.621055 GCCGAGAGAAGCTTCTATCTCA 59.379 50.000 35.63 0.00 41.96 3.27
636 643 2.455032 CTTCTATCTCACGTGAAGCGG 58.545 52.381 20.49 7.98 46.52 5.52
637 644 1.746470 TCTATCTCACGTGAAGCGGA 58.254 50.000 20.49 13.49 46.52 5.54
638 645 1.671328 TCTATCTCACGTGAAGCGGAG 59.329 52.381 20.49 12.09 46.52 4.63
642 649 1.816835 TCTCACGTGAAGCGGAGTATT 59.183 47.619 20.49 0.00 46.52 1.89
670 677 2.054140 GATATGCGGCGCCGGAAAAA 62.054 55.000 45.48 32.43 43.97 1.94
671 678 2.331019 ATATGCGGCGCCGGAAAAAC 62.331 55.000 45.48 29.03 43.97 2.43
685 692 1.335496 GAAAAACCCGTGCAAGCTACA 59.665 47.619 0.00 0.00 0.00 2.74
692 699 1.333619 CCGTGCAAGCTACAAAACAGT 59.666 47.619 0.00 0.00 0.00 3.55
693 700 2.223479 CCGTGCAAGCTACAAAACAGTT 60.223 45.455 0.00 0.00 0.00 3.16
694 701 3.035942 CGTGCAAGCTACAAAACAGTTC 58.964 45.455 0.00 0.00 0.00 3.01
696 703 4.037690 GTGCAAGCTACAAAACAGTTCAG 58.962 43.478 0.00 0.00 0.00 3.02
697 704 3.045688 GCAAGCTACAAAACAGTTCAGC 58.954 45.455 0.00 0.00 0.00 4.26
698 705 3.632189 CAAGCTACAAAACAGTTCAGCC 58.368 45.455 0.00 0.00 0.00 4.85
699 706 2.230660 AGCTACAAAACAGTTCAGCCC 58.769 47.619 0.00 0.00 0.00 5.19
700 707 1.953686 GCTACAAAACAGTTCAGCCCA 59.046 47.619 0.00 0.00 0.00 5.36
701 708 2.558359 GCTACAAAACAGTTCAGCCCAT 59.442 45.455 0.00 0.00 0.00 4.00
704 711 2.624838 ACAAAACAGTTCAGCCCATGAG 59.375 45.455 0.00 0.00 39.68 2.90
705 712 2.886523 CAAAACAGTTCAGCCCATGAGA 59.113 45.455 0.00 0.00 39.68 3.27
706 713 2.957402 AACAGTTCAGCCCATGAGAA 57.043 45.000 0.00 0.00 39.68 2.87
707 714 2.957402 ACAGTTCAGCCCATGAGAAA 57.043 45.000 0.00 0.00 39.68 2.52
708 715 3.228188 ACAGTTCAGCCCATGAGAAAA 57.772 42.857 0.00 0.00 39.68 2.29
709 716 3.152341 ACAGTTCAGCCCATGAGAAAAG 58.848 45.455 0.00 0.00 39.68 2.27
710 717 3.181440 ACAGTTCAGCCCATGAGAAAAGA 60.181 43.478 0.00 0.00 39.68 2.52
711 718 3.439476 CAGTTCAGCCCATGAGAAAAGAG 59.561 47.826 0.00 0.00 39.68 2.85
719 726 4.401925 CCCATGAGAAAAGAGAAACCACT 58.598 43.478 0.00 0.00 0.00 4.00
730 737 7.703058 AAAGAGAAACCACTGAAAGAAAAGA 57.297 32.000 0.00 0.00 37.43 2.52
782 789 8.828863 AGAGAATCCTCGATGACATTTGGTCG 62.829 46.154 0.00 0.00 45.59 4.79
804 817 6.972901 GTCGTAAAAATCCTTTGATGGAATCC 59.027 38.462 0.00 0.00 44.73 3.01
855 868 4.333372 AGCAGTTTTTCATTTTGCACCTTG 59.667 37.500 0.00 0.00 37.24 3.61
859 872 5.523552 AGTTTTTCATTTTGCACCTTGCTAC 59.476 36.000 0.00 0.00 45.31 3.58
863 876 3.573538 TCATTTTGCACCTTGCTACACAT 59.426 39.130 0.00 0.00 45.31 3.21
864 877 4.764308 TCATTTTGCACCTTGCTACACATA 59.236 37.500 0.00 0.00 45.31 2.29
871 884 6.356556 TGCACCTTGCTACACATAGATATTT 58.643 36.000 0.00 0.00 45.31 1.40
904 997 1.135731 GCTCTCACCAGTCGTCTCG 59.864 63.158 0.00 0.00 0.00 4.04
905 998 1.135731 CTCTCACCAGTCGTCTCGC 59.864 63.158 0.00 0.00 0.00 5.03
957 1051 3.462678 GACCTCACCCGCTCCCTC 61.463 72.222 0.00 0.00 0.00 4.30
960 1054 4.787280 CTCACCCGCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
2035 2202 3.317993 ACAAATGGTTGTAGACAAGGCAC 59.682 43.478 0.00 0.00 46.33 5.01
2036 2203 4.931425 ACAAATGGTTGTAGACAAGGCACT 60.931 41.667 0.00 0.00 46.33 4.40
2040 2207 2.289444 GGTTGTAGACAAGGCACTGCTA 60.289 50.000 0.00 0.00 40.86 3.49
2154 2321 0.694771 TGCTCCTTTCTGTGGCATCT 59.305 50.000 0.00 0.00 0.00 2.90
2155 2322 1.093159 GCTCCTTTCTGTGGCATCTG 58.907 55.000 0.00 0.00 0.00 2.90
2173 2340 6.192234 CATCTGTTGCTTAGAGCTTGAATT 57.808 37.500 1.29 0.00 42.97 2.17
2174 2341 6.618811 CATCTGTTGCTTAGAGCTTGAATTT 58.381 36.000 1.29 0.00 42.97 1.82
2176 2343 5.764686 TCTGTTGCTTAGAGCTTGAATTTGA 59.235 36.000 1.29 0.00 42.97 2.69
2184 2351 7.699812 GCTTAGAGCTTGAATTTGAAACATAGG 59.300 37.037 0.00 0.00 38.45 2.57
2186 2353 7.150783 AGAGCTTGAATTTGAAACATAGGTC 57.849 36.000 0.00 0.00 0.00 3.85
2187 2354 6.151817 AGAGCTTGAATTTGAAACATAGGTCC 59.848 38.462 0.00 0.00 31.26 4.46
2188 2355 6.012745 AGCTTGAATTTGAAACATAGGTCCT 58.987 36.000 0.00 0.00 0.00 3.85
2197 2364 7.531857 TTGAAACATAGGTCCTAATTTGCAA 57.468 32.000 13.65 11.99 0.00 4.08
2198 2365 7.716799 TGAAACATAGGTCCTAATTTGCAAT 57.283 32.000 13.65 0.00 0.00 3.56
2199 2366 7.546358 TGAAACATAGGTCCTAATTTGCAATG 58.454 34.615 13.65 4.80 0.00 2.82
2200 2367 5.520376 ACATAGGTCCTAATTTGCAATGC 57.480 39.130 1.78 0.00 0.00 3.56
2213 2380 1.402259 TGCAATGCGGGTAAATAACGG 59.598 47.619 0.00 0.00 0.00 4.44
2239 2406 6.092807 GCAGCAGATAAACTTGCTAACTAACT 59.907 38.462 0.00 0.00 33.88 2.24
2242 2410 9.892130 AGCAGATAAACTTGCTAACTAACTAAT 57.108 29.630 0.00 0.00 33.62 1.73
2262 2430 9.830975 AACTAATTTATGCTTTGACAAAAAGGT 57.169 25.926 1.62 0.00 0.00 3.50
2266 2434 9.606631 AATTTATGCTTTGACAAAAAGGTTACA 57.393 25.926 1.62 0.00 0.00 2.41
2268 2436 6.902224 ATGCTTTGACAAAAAGGTTACAAC 57.098 33.333 1.62 0.00 0.00 3.32
2269 2437 5.784177 TGCTTTGACAAAAAGGTTACAACA 58.216 33.333 1.62 0.00 0.00 3.33
2336 2525 4.289342 CAGAGACTGAAGCGATCATGTAG 58.711 47.826 0.00 0.00 37.44 2.74
2343 2532 5.106948 ACTGAAGCGATCATGTAGTTTGTTG 60.107 40.000 0.00 0.00 37.44 3.33
2360 2549 4.946478 TGTTGGGTAGTTTTTGAATGGG 57.054 40.909 0.00 0.00 0.00 4.00
2385 2574 2.460757 AATGAACAATTGTGGCCTGC 57.539 45.000 12.82 0.00 0.00 4.85
2399 2588 0.610687 GCCTGCAAGTCTAGGTCAGT 59.389 55.000 0.00 0.00 36.44 3.41
2401 2590 2.159170 GCCTGCAAGTCTAGGTCAGTAG 60.159 54.545 0.00 0.00 36.44 2.57
2417 2606 3.769844 TCAGTAGAAAGGCCAAGTAGAGG 59.230 47.826 5.01 0.00 0.00 3.69
2450 2639 6.341316 TCTTAGCTAATCAACTGCAAGGTAG 58.659 40.000 6.64 0.00 39.30 3.18
2454 2643 6.051717 AGCTAATCAACTGCAAGGTAGTATG 58.948 40.000 0.00 0.00 39.30 2.39
2463 2652 6.344500 ACTGCAAGGTAGTATGAAGAATCAG 58.656 40.000 0.00 0.00 37.33 2.90
2511 2700 8.951243 AGTAATCAGGCTTCATTTAGTTTTCTC 58.049 33.333 0.00 0.00 0.00 2.87
2512 2701 7.765695 AATCAGGCTTCATTTAGTTTTCTCA 57.234 32.000 0.00 0.00 0.00 3.27
2549 2738 6.365520 TCATTGCATACTGGAGTAGAGTAGA 58.634 40.000 0.00 0.00 33.52 2.59
2556 2745 5.968528 ACTGGAGTAGAGTAGAGTTGTTG 57.031 43.478 0.00 0.00 0.00 3.33
2577 2766 2.034558 GTGCTGTTGTACTTGGTTGCAT 59.965 45.455 0.00 0.00 0.00 3.96
2578 2767 3.252215 GTGCTGTTGTACTTGGTTGCATA 59.748 43.478 0.00 0.00 0.00 3.14
2598 2787 7.736447 GCATAATTGCCTAGAGTAATCAACT 57.264 36.000 0.00 0.00 43.38 3.16
2609 2798 9.126151 CCTAGAGTAATCAACTGAGAATCACTA 57.874 37.037 0.00 0.00 42.56 2.74
2622 2811 7.550906 ACTGAGAATCACTACTTATCCTTTTGC 59.449 37.037 0.00 0.00 42.56 3.68
2625 2814 7.398024 AGAATCACTACTTATCCTTTTGCACT 58.602 34.615 0.00 0.00 0.00 4.40
2629 2818 6.426937 TCACTACTTATCCTTTTGCACTTCAC 59.573 38.462 0.00 0.00 0.00 3.18
2672 2861 1.106285 GGATGCTTGATCCCAACACC 58.894 55.000 0.00 0.00 44.79 4.16
2678 2867 2.027192 GCTTGATCCCAACACCAGTAGA 60.027 50.000 0.00 0.00 0.00 2.59
2682 2871 3.587061 TGATCCCAACACCAGTAGAACAT 59.413 43.478 0.00 0.00 0.00 2.71
2730 2919 4.338400 TGACTAGATGGGATGTAAGTCACG 59.662 45.833 0.00 0.00 31.26 4.35
2766 2958 9.317936 CAAAAAGCTTTTATTTCTTCTGTTCCT 57.682 29.630 24.11 0.49 0.00 3.36
2767 2959 9.890629 AAAAAGCTTTTATTTCTTCTGTTCCTT 57.109 25.926 24.11 0.11 0.00 3.36
2768 2960 9.890629 AAAAGCTTTTATTTCTTCTGTTCCTTT 57.109 25.926 22.70 0.00 0.00 3.11
2852 3044 2.158813 TGCCTTTTGGTCGAAGAGTTCT 60.159 45.455 0.00 0.00 42.99 3.01
3170 3363 7.477683 AGGAATTTCCTTGATTGGAGGAACTTA 60.478 37.037 12.37 0.00 46.91 2.24
3218 3411 3.676093 CCACTGGGTAAGTTCTTTCTCC 58.324 50.000 0.00 0.00 36.83 3.71
3260 3454 2.030371 TGCTTCCAAGTGTGCATTGAA 58.970 42.857 0.01 0.00 0.00 2.69
3268 3462 7.701539 TCCAAGTGTGCATTGAATTATTACT 57.298 32.000 0.01 0.00 0.00 2.24
3269 3463 8.121305 TCCAAGTGTGCATTGAATTATTACTT 57.879 30.769 0.01 0.00 0.00 2.24
3318 3512 9.569122 TTTATAGAGCCAACAATTATACCCTTC 57.431 33.333 0.00 0.00 0.00 3.46
3337 3531 7.061054 ACCCTTCTCTAACTTAATTATTGCCC 58.939 38.462 0.00 0.00 0.00 5.36
3397 3591 9.199982 CATGCAAAATTGTTTATCTTTCAGTCT 57.800 29.630 0.00 0.00 0.00 3.24
3411 3605 5.702670 TCTTTCAGTCTATCACTTTGCTTGG 59.297 40.000 0.00 0.00 30.26 3.61
3414 3608 3.369147 CAGTCTATCACTTTGCTTGGACG 59.631 47.826 0.00 0.00 30.26 4.79
3415 3609 3.258372 AGTCTATCACTTTGCTTGGACGA 59.742 43.478 0.00 0.00 26.56 4.20
3418 3612 3.837213 ATCACTTTGCTTGGACGAATG 57.163 42.857 0.00 0.00 0.00 2.67
3428 3622 1.442769 TGGACGAATGAAGCTCTTGC 58.557 50.000 0.00 0.00 40.05 4.01
3500 3694 6.759497 ACTGTTTGAACTTTTACTCTGCTT 57.241 33.333 0.00 0.00 0.00 3.91
3501 3695 7.158099 ACTGTTTGAACTTTTACTCTGCTTT 57.842 32.000 0.00 0.00 0.00 3.51
3577 3771 2.162208 GTGTGATCACAAATGCACGGAT 59.838 45.455 29.42 0.00 43.77 4.18
3579 3773 1.744522 TGATCACAAATGCACGGATGG 59.255 47.619 0.00 0.00 0.00 3.51
3595 3789 5.753921 CACGGATGGTATTTAGGAGAAAGTC 59.246 44.000 0.00 0.00 0.00 3.01
3596 3790 5.424252 ACGGATGGTATTTAGGAGAAAGTCA 59.576 40.000 0.00 0.00 0.00 3.41
3650 3969 7.717875 TGGCTTACCCAATATTGTATGTCTTAC 59.282 37.037 14.25 0.00 41.82 2.34
3664 3983 9.747898 TTGTATGTCTTACCAATATCCTGTTTT 57.252 29.630 0.00 0.00 0.00 2.43
3666 3985 9.391006 GTATGTCTTACCAATATCCTGTTTTCA 57.609 33.333 0.00 0.00 0.00 2.69
3686 4006 1.906574 AGACGACTTATGGCTTCCCAA 59.093 47.619 0.00 0.00 46.14 4.12
3694 4014 5.329399 ACTTATGGCTTCCCAATTGTGTTA 58.671 37.500 4.43 0.00 46.14 2.41
3711 4031 5.679601 TGTGTTATATAGTTCATGGCTGCA 58.320 37.500 0.50 0.00 0.00 4.41
3722 4043 5.129815 AGTTCATGGCTGCAATATTTTCCAT 59.870 36.000 0.50 0.00 34.90 3.41
3765 4086 1.672363 TCTGCTGTTGTTCAGTTGCTG 59.328 47.619 0.00 0.00 45.23 4.41
3794 4115 4.556942 TGTTCTCTGCACTGTTGATTTG 57.443 40.909 0.00 0.00 0.00 2.32
3801 4122 2.426381 TGCACTGTTGATTTGACTTGCA 59.574 40.909 0.00 0.00 35.68 4.08
3804 4125 4.039703 CACTGTTGATTTGACTTGCAGTG 58.960 43.478 7.27 7.27 43.71 3.66
3808 4129 4.114794 GTTGATTTGACTTGCAGTGCTTT 58.885 39.130 17.60 0.00 0.00 3.51
3813 4134 2.300433 TGACTTGCAGTGCTTTCATGT 58.700 42.857 17.60 4.04 0.00 3.21
3816 4137 2.033801 ACTTGCAGTGCTTTCATGTGAC 59.966 45.455 17.60 0.00 0.00 3.67
3850 4171 5.277047 GCTTGCTGTCTGCCTATATTTTTC 58.723 41.667 0.00 0.00 42.00 2.29
3869 4190 0.979665 CTCTCTTCTGCCCCACTGAA 59.020 55.000 0.00 0.00 35.24 3.02
3875 4196 2.276732 TCTGCCCCACTGAAGAAAAG 57.723 50.000 0.00 0.00 0.00 2.27
3927 4249 6.363065 TGGTTACATGTTTTTGGGTGTACTA 58.637 36.000 2.30 0.00 0.00 1.82
3939 4261 3.242549 GGTGTACTACCCTTCTTTCCG 57.757 52.381 0.00 0.00 44.15 4.30
3949 4271 4.576879 ACCCTTCTTTCCGTGTTCTTATC 58.423 43.478 0.00 0.00 0.00 1.75
3955 4277 4.868171 TCTTTCCGTGTTCTTATCCATTCG 59.132 41.667 0.00 0.00 0.00 3.34
3956 4278 3.173668 TCCGTGTTCTTATCCATTCGG 57.826 47.619 0.00 0.00 38.36 4.30
3957 4279 2.159014 TCCGTGTTCTTATCCATTCGGG 60.159 50.000 0.00 0.00 37.72 5.14
3958 4280 2.419574 CCGTGTTCTTATCCATTCGGGT 60.420 50.000 0.00 0.00 38.11 5.28
4017 4342 0.615331 GTCAGGTCCCAGATGAAGCA 59.385 55.000 0.00 0.00 0.00 3.91
4102 4427 8.804743 CATTTTGCTATTTGAGATGTTGATGAC 58.195 33.333 0.00 0.00 0.00 3.06
4111 4436 7.987268 TTGAGATGTTGATGACGTATACTTC 57.013 36.000 2.48 2.48 0.00 3.01
4122 4447 6.073327 TGACGTATACTTCACATCCATCTC 57.927 41.667 7.91 0.00 0.00 2.75
4125 4450 7.113658 ACGTATACTTCACATCCATCTCTTT 57.886 36.000 0.56 0.00 0.00 2.52
4127 4452 8.692710 ACGTATACTTCACATCCATCTCTTTAA 58.307 33.333 0.56 0.00 0.00 1.52
4128 4453 9.698309 CGTATACTTCACATCCATCTCTTTAAT 57.302 33.333 0.56 0.00 0.00 1.40
4136 4461 9.246670 TCACATCCATCTCTTTAATTTGTGAAT 57.753 29.630 0.00 0.00 38.29 2.57
4137 4462 9.865321 CACATCCATCTCTTTAATTTGTGAATT 57.135 29.630 0.00 0.00 38.88 2.17
4169 4494 3.642755 CACTGTCGGAACTGTGGC 58.357 61.111 7.46 0.00 46.11 5.01
4196 4521 0.108186 TCTGCGATAAGTGCACCCAG 60.108 55.000 14.63 10.50 37.44 4.45
4279 4604 4.893424 TGGTAGTGTTCTTTTGCTTCAC 57.107 40.909 0.00 0.00 0.00 3.18
4297 4622 5.674525 CTTCACCCTCTTATATTGCAGTCA 58.325 41.667 0.00 0.00 0.00 3.41
4324 4649 7.970384 AGTTGTGATTTATGTTATGTACACCG 58.030 34.615 0.00 0.00 40.19 4.94
4327 4652 7.966111 TGTGATTTATGTTATGTACACCGTTC 58.034 34.615 0.00 0.00 40.19 3.95
4328 4653 7.064847 TGTGATTTATGTTATGTACACCGTTCC 59.935 37.037 0.00 0.00 40.19 3.62
4332 4664 1.391144 GTTATGTACACCGTTCCGTGC 59.609 52.381 0.00 0.00 37.25 5.34
4349 4681 1.470098 GTGCTGTTTAGTGAGCATGGG 59.530 52.381 0.00 0.00 46.51 4.00
4360 4692 3.698040 AGTGAGCATGGGCAATAAAAGAG 59.302 43.478 0.00 0.00 44.61 2.85
4373 4705 6.017026 GGCAATAAAAGAGCCTCTTGGTATAC 60.017 42.308 7.93 5.57 44.92 1.47
4375 4707 7.254932 GCAATAAAAGAGCCTCTTGGTATACTG 60.255 40.741 7.93 6.71 36.71 2.74
4407 4739 9.787435 TTAAACTTCATAACTTCTGAGGCTAAA 57.213 29.630 0.00 0.00 0.00 1.85
4410 4742 8.870075 ACTTCATAACTTCTGAGGCTAAAATT 57.130 30.769 0.00 0.00 0.00 1.82
4485 4864 1.490490 AGCACAAGAGACCTGGACAAA 59.510 47.619 0.00 0.00 0.00 2.83
4497 4876 8.383175 AGAGACCTGGACAAATATCAAACTTAA 58.617 33.333 0.00 0.00 0.00 1.85
4565 4955 2.031870 GGGTGTGCCTTTTCTTGTCTT 58.968 47.619 0.00 0.00 34.45 3.01
4566 4956 2.034685 GGGTGTGCCTTTTCTTGTCTTC 59.965 50.000 0.00 0.00 34.45 2.87
4573 4963 3.304057 GCCTTTTCTTGTCTTCGAAGGTG 60.304 47.826 24.37 12.11 36.79 4.00
4575 4965 3.830744 TTTCTTGTCTTCGAAGGTGGA 57.169 42.857 24.37 14.27 0.00 4.02
4578 4968 0.685097 TTGTCTTCGAAGGTGGAGGG 59.315 55.000 24.37 0.00 0.00 4.30
4582 4972 2.108168 TCTTCGAAGGTGGAGGGTATG 58.892 52.381 24.37 0.00 0.00 2.39
4583 4973 2.108168 CTTCGAAGGTGGAGGGTATGA 58.892 52.381 17.70 0.00 0.00 2.15
4584 4974 1.481871 TCGAAGGTGGAGGGTATGAC 58.518 55.000 0.00 0.00 0.00 3.06
4585 4975 0.464452 CGAAGGTGGAGGGTATGACC 59.536 60.000 0.00 0.00 37.60 4.02
4586 4976 1.880941 GAAGGTGGAGGGTATGACCT 58.119 55.000 0.00 0.00 45.57 3.85
4589 4979 1.916181 AGGTGGAGGGTATGACCTTTG 59.084 52.381 0.00 0.00 42.10 2.77
4602 4992 2.568062 TGACCTTTGTTAGCCGATACCA 59.432 45.455 0.00 0.00 0.00 3.25
4603 4993 2.934553 GACCTTTGTTAGCCGATACCAC 59.065 50.000 0.00 0.00 0.00 4.16
4609 4999 1.140252 GTTAGCCGATACCACCCACAT 59.860 52.381 0.00 0.00 0.00 3.21
4647 5037 4.568152 TGTTTAAGGACAAAAGCAGCTC 57.432 40.909 0.00 0.00 0.00 4.09
4650 5040 0.890996 AAGGACAAAAGCAGCTCCCG 60.891 55.000 0.00 0.00 0.00 5.14
4659 5049 2.717639 AGCAGCTCCCGATGTTTAAT 57.282 45.000 0.00 0.00 0.00 1.40
4661 5051 1.268743 GCAGCTCCCGATGTTTAATGC 60.269 52.381 0.00 0.00 0.00 3.56
4667 5057 1.603802 CCCGATGTTTAATGCGAGCAT 59.396 47.619 4.52 4.52 38.46 3.79
4713 5103 4.431416 TTTTCCTGTGAAGTAGCTTCCA 57.569 40.909 0.00 3.96 39.51 3.53
4722 5112 2.409948 AGTAGCTTCCATTGCAGTCC 57.590 50.000 0.00 0.00 0.00 3.85
4761 5159 3.306613 GCTACTGGTGGGAGGTTATACT 58.693 50.000 0.00 0.00 0.00 2.12
4854 5259 0.179009 TGAGCAGTGCAAAGGAAGCT 60.179 50.000 19.20 0.00 34.61 3.74
4947 5352 8.200792 TCTTATTTTGTTTCTTTAGCCAGCAAA 58.799 29.630 0.00 0.00 0.00 3.68
4948 5353 8.900983 TTATTTTGTTTCTTTAGCCAGCAAAT 57.099 26.923 0.00 0.00 0.00 2.32
4949 5354 9.988815 TTATTTTGTTTCTTTAGCCAGCAAATA 57.011 25.926 0.00 0.00 0.00 1.40
4951 5356 8.900983 TTTTGTTTCTTTAGCCAGCAAATATT 57.099 26.923 0.00 0.00 0.00 1.28
4963 5368 8.103948 AGCCAGCAAATATTTATAGCTTACAG 57.896 34.615 8.39 0.00 32.35 2.74
4993 5405 4.275689 CACAGCACAACTTGACTGGATTTA 59.724 41.667 16.03 0.00 35.09 1.40
5093 5505 8.017373 CAGGTTTGTGTCTTCATATACTTGTTG 58.983 37.037 0.00 0.00 0.00 3.33
5105 5517 8.054152 TCATATACTTGTTGCATTTCACATGT 57.946 30.769 11.23 11.23 0.00 3.21
5113 5525 3.489355 TGCATTTCACATGTGTCCTCTT 58.511 40.909 24.63 3.59 0.00 2.85
5153 5565 8.511321 TCTGCTTATAAATAACTGTGTTGGTTG 58.489 33.333 0.00 0.00 0.00 3.77
5154 5566 7.598278 TGCTTATAAATAACTGTGTTGGTTGG 58.402 34.615 0.00 0.00 0.00 3.77
5233 5645 1.077212 ATGCCCCATCTGCACAGTC 60.077 57.895 0.00 0.00 42.38 3.51
5259 5671 2.300152 TCCAGGTTCATCACTCTCACAC 59.700 50.000 0.00 0.00 0.00 3.82
5272 5684 3.077359 CTCTCACACCCCTTTTCATGAC 58.923 50.000 0.00 0.00 0.00 3.06
5273 5685 2.711009 TCTCACACCCCTTTTCATGACT 59.289 45.455 0.00 0.00 0.00 3.41
5292 5704 1.212751 GATGACTTGCGTTTGCCCC 59.787 57.895 0.00 0.00 41.78 5.80
5304 5716 4.545706 TGCCCCGCATCGACATCC 62.546 66.667 0.00 0.00 31.71 3.51
5309 5721 1.714899 CCCGCATCGACATCCAAACC 61.715 60.000 0.00 0.00 0.00 3.27
5311 5723 1.024046 CGCATCGACATCCAAACCCA 61.024 55.000 0.00 0.00 0.00 4.51
5313 5725 1.950484 GCATCGACATCCAAACCCAGT 60.950 52.381 0.00 0.00 0.00 4.00
5314 5726 2.436417 CATCGACATCCAAACCCAGTT 58.564 47.619 0.00 0.00 0.00 3.16
5316 5728 3.773418 TCGACATCCAAACCCAGTTTA 57.227 42.857 0.00 0.00 33.70 2.01
5318 5730 4.258543 TCGACATCCAAACCCAGTTTATC 58.741 43.478 0.00 0.00 33.70 1.75
5319 5731 4.019681 TCGACATCCAAACCCAGTTTATCT 60.020 41.667 0.00 0.00 33.70 1.98
5320 5732 5.188163 TCGACATCCAAACCCAGTTTATCTA 59.812 40.000 0.00 0.00 33.70 1.98
5321 5733 5.878116 CGACATCCAAACCCAGTTTATCTAA 59.122 40.000 0.00 0.00 33.70 2.10
5323 5735 5.949952 ACATCCAAACCCAGTTTATCTAACC 59.050 40.000 0.00 0.00 37.46 2.85
5324 5736 4.925836 TCCAAACCCAGTTTATCTAACCC 58.074 43.478 0.00 0.00 37.46 4.11
5325 5737 4.354387 TCCAAACCCAGTTTATCTAACCCA 59.646 41.667 0.00 0.00 37.46 4.51
5326 5738 5.081032 CCAAACCCAGTTTATCTAACCCAA 58.919 41.667 0.00 0.00 37.46 4.12
5327 5739 5.185056 CCAAACCCAGTTTATCTAACCCAAG 59.815 44.000 0.00 0.00 37.46 3.61
5329 5741 3.920841 ACCCAGTTTATCTAACCCAAGGT 59.079 43.478 0.00 0.00 37.46 3.50
5330 5742 5.102967 ACCCAGTTTATCTAACCCAAGGTA 58.897 41.667 0.00 0.00 37.46 3.08
5331 5743 5.552766 ACCCAGTTTATCTAACCCAAGGTAA 59.447 40.000 0.00 0.00 37.46 2.85
5332 5744 6.045813 ACCCAGTTTATCTAACCCAAGGTAAA 59.954 38.462 0.00 0.00 37.46 2.01
5333 5745 6.376299 CCCAGTTTATCTAACCCAAGGTAAAC 59.624 42.308 10.40 10.40 46.52 2.01
5394 5806 0.102481 AGACGATAGAATGCGGCGTT 59.898 50.000 9.37 7.24 41.26 4.84
5433 5845 0.750249 TCAGCTCTCGTTGAACACCA 59.250 50.000 0.00 0.00 0.00 4.17
5434 5846 1.143305 CAGCTCTCGTTGAACACCAG 58.857 55.000 0.00 0.00 0.00 4.00
5435 5847 0.753262 AGCTCTCGTTGAACACCAGT 59.247 50.000 0.00 0.00 0.00 4.00
5437 5849 1.784525 CTCTCGTTGAACACCAGTCC 58.215 55.000 0.00 0.00 0.00 3.85
5438 5850 0.391597 TCTCGTTGAACACCAGTCCC 59.608 55.000 0.00 0.00 0.00 4.46
5439 5851 0.105964 CTCGTTGAACACCAGTCCCA 59.894 55.000 0.00 0.00 0.00 4.37
5440 5852 0.179067 TCGTTGAACACCAGTCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
5441 5853 0.462937 CGTTGAACACCAGTCCCACA 60.463 55.000 0.00 0.00 0.00 4.17
5442 5854 1.757682 GTTGAACACCAGTCCCACAA 58.242 50.000 0.00 0.00 0.00 3.33
5453 5865 0.247736 GTCCCACAAGTCGCTCAGAT 59.752 55.000 0.00 0.00 0.00 2.90
5461 5873 1.021202 AGTCGCTCAGATCTCTTCCG 58.979 55.000 0.00 0.00 0.00 4.30
5477 5889 0.250234 TCCGCTTTGATCCCTGTCAG 59.750 55.000 0.00 0.00 0.00 3.51
5478 5890 0.250234 CCGCTTTGATCCCTGTCAGA 59.750 55.000 0.00 0.00 0.00 3.27
5479 5891 1.649664 CGCTTTGATCCCTGTCAGAG 58.350 55.000 0.00 0.00 34.44 3.35
5480 5892 1.205655 CGCTTTGATCCCTGTCAGAGA 59.794 52.381 0.00 0.00 33.45 3.10
5481 5893 2.158986 CGCTTTGATCCCTGTCAGAGAT 60.159 50.000 0.00 0.00 33.45 2.75
5483 5895 3.743899 GCTTTGATCCCTGTCAGAGATCC 60.744 52.174 18.65 3.04 36.41 3.36
5487 5899 1.381872 CCCTGTCAGAGATCCCCGT 60.382 63.158 0.00 0.00 0.00 5.28
5492 5904 2.121538 TCAGAGATCCCCGTGCTCG 61.122 63.158 0.14 0.14 33.98 5.03
5493 5905 3.532155 AGAGATCCCCGTGCTCGC 61.532 66.667 1.89 0.00 33.98 5.03
5511 5923 1.599047 CCGAGGTCATTGCTCCAGT 59.401 57.895 0.00 0.00 0.00 4.00
5517 5929 1.354040 GTCATTGCTCCAGTCAGTCG 58.646 55.000 0.00 0.00 0.00 4.18
5525 5937 2.353208 GCTCCAGTCAGTCGTCATCTTT 60.353 50.000 0.00 0.00 0.00 2.52
5711 6127 7.879677 TGTGTAGATTCAAGTTTCATGAGATGT 59.120 33.333 0.00 0.00 0.00 3.06
5712 6128 8.173775 GTGTAGATTCAAGTTTCATGAGATGTG 58.826 37.037 0.00 0.00 0.00 3.21
5730 6146 9.030301 TGAGATGTGATGTAATGTAATGTAACG 57.970 33.333 0.00 0.00 0.00 3.18
5731 6147 8.942338 AGATGTGATGTAATGTAATGTAACGT 57.058 30.769 0.00 0.00 0.00 3.99
5736 6152 7.215568 GTGATGTAATGTAATGTAACGTGTTGC 59.784 37.037 0.00 0.00 0.00 4.17
5743 6159 1.085091 TGTAACGTGTTGCGGTTTGT 58.915 45.000 0.00 0.00 46.52 2.83
5757 6173 1.595794 GGTTTGTTTTCTCGCAGTCGA 59.404 47.619 0.00 0.00 43.28 4.20
5760 6176 2.432206 TGTTTTCTCGCAGTCGATCA 57.568 45.000 0.00 0.00 44.56 2.92
5769 6185 1.363744 GCAGTCGATCAGTTCCCTTG 58.636 55.000 0.00 0.00 0.00 3.61
5777 6193 1.048601 TCAGTTCCCTTGCGTTCTCT 58.951 50.000 0.00 0.00 0.00 3.10
5918 6336 8.934507 AAAAGTCTTAGATTTCGATACAGAGG 57.065 34.615 0.00 0.00 0.00 3.69
5920 6338 6.366340 AGTCTTAGATTTCGATACAGAGGGA 58.634 40.000 0.00 0.00 0.00 4.20
5921 6339 6.488683 AGTCTTAGATTTCGATACAGAGGGAG 59.511 42.308 0.00 0.00 0.00 4.30
5927 6345 7.232188 AGATTTCGATACAGAGGGAGTACATA 58.768 38.462 0.00 0.00 0.00 2.29
5928 6346 7.891183 AGATTTCGATACAGAGGGAGTACATAT 59.109 37.037 0.00 0.00 0.00 1.78
5929 6347 7.834881 TTTCGATACAGAGGGAGTACATATT 57.165 36.000 0.00 0.00 0.00 1.28
5977 6395 8.542132 CAGAAACCATTGACTTGTAAACAAATG 58.458 33.333 0.00 0.00 35.15 2.32
5982 6400 6.866248 CCATTGACTTGTAAACAAATGGTACC 59.134 38.462 4.43 4.43 36.49 3.34
5984 6402 6.870971 TGACTTGTAAACAAATGGTACCTC 57.129 37.500 14.36 0.00 35.15 3.85
5985 6403 5.766174 TGACTTGTAAACAAATGGTACCTCC 59.234 40.000 14.36 0.00 35.15 4.30
5986 6404 4.758165 ACTTGTAAACAAATGGTACCTCCG 59.242 41.667 14.36 1.56 35.63 4.63
5987 6405 4.354893 TGTAAACAAATGGTACCTCCGT 57.645 40.909 14.36 2.22 39.52 4.69
5988 6406 4.317488 TGTAAACAAATGGTACCTCCGTC 58.683 43.478 14.36 0.00 39.52 4.79
5993 6411 3.000727 CAAATGGTACCTCCGTCTGTTC 58.999 50.000 14.36 0.00 39.52 3.18
6007 6425 2.745821 GTCTGTTCGGGTTTATTGGTCC 59.254 50.000 0.00 0.00 0.00 4.46
6010 6428 0.332293 TTCGGGTTTATTGGTCCCCC 59.668 55.000 0.00 0.00 38.09 5.40
6013 6431 0.260816 GGGTTTATTGGTCCCCCTCC 59.739 60.000 0.00 0.00 35.52 4.30
6014 6432 0.260816 GGTTTATTGGTCCCCCTCCC 59.739 60.000 0.00 0.00 0.00 4.30
6015 6433 1.004436 GTTTATTGGTCCCCCTCCCA 58.996 55.000 0.00 0.00 0.00 4.37
6016 6434 1.573857 GTTTATTGGTCCCCCTCCCAT 59.426 52.381 0.00 0.00 0.00 4.00
6017 6435 2.009186 TTATTGGTCCCCCTCCCATT 57.991 50.000 0.00 0.00 0.00 3.16
6018 6436 2.009186 TATTGGTCCCCCTCCCATTT 57.991 50.000 0.00 0.00 0.00 2.32
6019 6437 1.101195 ATTGGTCCCCCTCCCATTTT 58.899 50.000 0.00 0.00 0.00 1.82
6020 6438 0.411848 TTGGTCCCCCTCCCATTTTC 59.588 55.000 0.00 0.00 0.00 2.29
6021 6439 0.479589 TGGTCCCCCTCCCATTTTCT 60.480 55.000 0.00 0.00 0.00 2.52
6022 6440 0.033109 GGTCCCCCTCCCATTTTCTG 60.033 60.000 0.00 0.00 0.00 3.02
6023 6441 0.684479 GTCCCCCTCCCATTTTCTGC 60.684 60.000 0.00 0.00 0.00 4.26
6024 6442 1.381735 CCCCCTCCCATTTTCTGCC 60.382 63.158 0.00 0.00 0.00 4.85
6025 6443 1.381735 CCCCTCCCATTTTCTGCCC 60.382 63.158 0.00 0.00 0.00 5.36
6026 6444 1.387737 CCCTCCCATTTTCTGCCCA 59.612 57.895 0.00 0.00 0.00 5.36
6027 6445 0.252193 CCCTCCCATTTTCTGCCCAA 60.252 55.000 0.00 0.00 0.00 4.12
6028 6446 1.623279 CCCTCCCATTTTCTGCCCAAT 60.623 52.381 0.00 0.00 0.00 3.16
6029 6447 2.190538 CCTCCCATTTTCTGCCCAATT 58.809 47.619 0.00 0.00 0.00 2.32
6030 6448 2.573009 CCTCCCATTTTCTGCCCAATTT 59.427 45.455 0.00 0.00 0.00 1.82
6031 6449 3.009363 CCTCCCATTTTCTGCCCAATTTT 59.991 43.478 0.00 0.00 0.00 1.82
6032 6450 4.004982 CTCCCATTTTCTGCCCAATTTTG 58.995 43.478 0.00 0.00 0.00 2.44
6033 6451 3.649981 TCCCATTTTCTGCCCAATTTTGA 59.350 39.130 0.00 0.00 0.00 2.69
6034 6452 4.289148 TCCCATTTTCTGCCCAATTTTGAT 59.711 37.500 0.00 0.00 0.00 2.57
6035 6453 4.637091 CCCATTTTCTGCCCAATTTTGATC 59.363 41.667 0.00 0.00 0.00 2.92
6110 6643 6.851609 TGGATTCATATTCGAAACAGGTTTG 58.148 36.000 0.00 0.00 32.11 2.93
6113 6646 7.484959 GGATTCATATTCGAAACAGGTTTGAAC 59.515 37.037 0.00 0.00 32.11 3.18
6117 6650 7.546316 TCATATTCGAAACAGGTTTGAACGATA 59.454 33.333 0.00 0.00 32.11 2.92
6132 6665 9.881529 GTTTGAACGATACTATTTTTGTGGTAA 57.118 29.630 0.00 0.00 0.00 2.85
6170 6703 7.296628 TGGTAGTTAAATCAAATGCCAAAGT 57.703 32.000 0.00 0.00 42.85 2.66
6178 6711 2.103941 TCAAATGCCAAAGTTTGACCCC 59.896 45.455 17.33 3.36 38.88 4.95
6182 6715 1.909302 TGCCAAAGTTTGACCCCAAAA 59.091 42.857 17.33 0.00 43.18 2.44
6183 6716 2.507471 TGCCAAAGTTTGACCCCAAAAT 59.493 40.909 17.33 0.00 43.18 1.82
6184 6717 3.711704 TGCCAAAGTTTGACCCCAAAATA 59.288 39.130 17.33 0.00 43.18 1.40
6185 6718 4.062293 GCCAAAGTTTGACCCCAAAATAC 58.938 43.478 17.33 0.00 43.18 1.89
6190 6723 7.201688 CCAAAGTTTGACCCCAAAATACAAAAG 60.202 37.037 17.33 0.00 43.18 2.27
6208 6741 6.443832 ACAAAAGGGGCTAATAAATCCTGAT 58.556 36.000 0.00 0.00 0.00 2.90
6215 6748 5.006386 GGCTAATAAATCCTGATGGAGGTG 58.994 45.833 0.00 0.00 46.91 4.00
6230 6763 4.228824 TGGAGGTGGTACAAAGAAGTACT 58.771 43.478 0.00 0.00 44.16 2.73
6233 6766 3.581770 AGGTGGTACAAAGAAGTACTCCC 59.418 47.826 0.00 0.00 44.16 4.30
6234 6767 3.581770 GGTGGTACAAAGAAGTACTCCCT 59.418 47.826 0.00 0.00 44.16 4.20
6236 6769 3.836562 TGGTACAAAGAAGTACTCCCTCC 59.163 47.826 0.00 0.00 43.01 4.30
6237 6770 3.119209 GGTACAAAGAAGTACTCCCTCCG 60.119 52.174 0.00 0.00 43.01 4.63
6238 6771 2.606378 ACAAAGAAGTACTCCCTCCGT 58.394 47.619 0.00 0.00 0.00 4.69
6239 6772 2.970640 ACAAAGAAGTACTCCCTCCGTT 59.029 45.455 0.00 0.00 0.00 4.44
6241 6774 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
6245 6778 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
6246 6779 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
6247 6780 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6248 6781 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
6249 6782 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
6250 6783 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
6251 6784 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
6252 6785 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
6253 6786 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
6254 6787 4.439968 CCTCCGTTCCTAAATACAAGTCC 58.560 47.826 0.00 0.00 0.00 3.85
6255 6788 4.161754 CCTCCGTTCCTAAATACAAGTCCT 59.838 45.833 0.00 0.00 0.00 3.85
6256 6789 5.338137 CCTCCGTTCCTAAATACAAGTCCTT 60.338 44.000 0.00 0.00 0.00 3.36
6257 6790 6.117975 TCCGTTCCTAAATACAAGTCCTTT 57.882 37.500 0.00 0.00 0.00 3.11
6258 6791 6.536447 TCCGTTCCTAAATACAAGTCCTTTT 58.464 36.000 0.00 0.00 0.00 2.27
6259 6792 7.678837 TCCGTTCCTAAATACAAGTCCTTTTA 58.321 34.615 0.00 0.00 0.00 1.52
6260 6793 7.820872 TCCGTTCCTAAATACAAGTCCTTTTAG 59.179 37.037 0.00 0.00 33.47 1.85
6261 6794 7.820872 CCGTTCCTAAATACAAGTCCTTTTAGA 59.179 37.037 0.00 0.00 34.90 2.10
6262 6795 8.654215 CGTTCCTAAATACAAGTCCTTTTAGAC 58.346 37.037 0.00 0.00 34.90 2.59
6263 6796 9.498176 GTTCCTAAATACAAGTCCTTTTAGACA 57.502 33.333 0.00 0.00 39.34 3.41
6273 6806 9.981114 ACAAGTCCTTTTAGACATTTTAAATGG 57.019 29.630 20.00 5.69 39.34 3.16
6286 6819 9.485591 GACATTTTAAATGGACTACAACATACG 57.514 33.333 20.00 0.00 0.00 3.06
6287 6820 8.455682 ACATTTTAAATGGACTACAACATACGG 58.544 33.333 20.00 0.00 0.00 4.02
6288 6821 8.670135 CATTTTAAATGGACTACAACATACGGA 58.330 33.333 9.63 0.00 0.00 4.69
6289 6822 8.795842 TTTTAAATGGACTACAACATACGGAT 57.204 30.769 0.00 0.00 0.00 4.18
6290 6823 7.780008 TTAAATGGACTACAACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
6291 6824 3.173668 TGGACTACAACATACGGATGC 57.826 47.619 7.78 0.00 36.43 3.91
6292 6825 2.498078 TGGACTACAACATACGGATGCA 59.502 45.455 7.78 0.00 36.43 3.96
6293 6826 3.133901 TGGACTACAACATACGGATGCAT 59.866 43.478 7.78 0.00 36.43 3.96
6294 6827 3.494626 GGACTACAACATACGGATGCATG 59.505 47.826 7.78 9.99 36.43 4.06
6295 6828 4.119862 GACTACAACATACGGATGCATGT 58.880 43.478 19.89 19.89 38.92 3.21
6296 6829 5.270893 ACTACAACATACGGATGCATGTA 57.729 39.130 19.97 19.97 37.51 2.29
6297 6830 5.829233 CTACAACATACGGATGCATGTAG 57.171 43.478 26.90 26.90 43.29 2.74
6298 6831 4.400529 ACAACATACGGATGCATGTAGA 57.599 40.909 15.89 0.00 35.66 2.59
6299 6832 4.119862 ACAACATACGGATGCATGTAGAC 58.880 43.478 15.89 0.00 35.66 2.59
6300 6833 4.119136 CAACATACGGATGCATGTAGACA 58.881 43.478 7.78 0.00 36.43 3.41
6301 6834 4.607293 ACATACGGATGCATGTAGACAT 57.393 40.909 7.78 0.00 36.43 3.06
6302 6835 5.722021 ACATACGGATGCATGTAGACATA 57.278 39.130 7.78 0.00 36.43 2.29
6303 6836 5.470368 ACATACGGATGCATGTAGACATAC 58.530 41.667 7.78 0.00 36.43 2.39
6304 6837 5.243954 ACATACGGATGCATGTAGACATACT 59.756 40.000 7.78 0.00 36.43 2.12
6305 6838 4.672587 ACGGATGCATGTAGACATACTT 57.327 40.909 2.46 0.00 34.26 2.24
6306 6839 5.023533 ACGGATGCATGTAGACATACTTT 57.976 39.130 2.46 0.00 34.26 2.66
6307 6840 6.156748 ACGGATGCATGTAGACATACTTTA 57.843 37.500 2.46 0.00 34.26 1.85
6308 6841 6.216569 ACGGATGCATGTAGACATACTTTAG 58.783 40.000 2.46 0.00 34.26 1.85
6309 6842 6.040504 ACGGATGCATGTAGACATACTTTAGA 59.959 38.462 2.46 0.00 34.26 2.10
6310 6843 6.584184 CGGATGCATGTAGACATACTTTAGAG 59.416 42.308 2.46 0.00 34.26 2.43
6311 6844 7.437748 GGATGCATGTAGACATACTTTAGAGT 58.562 38.462 2.46 0.00 39.97 3.24
6312 6845 8.577296 GGATGCATGTAGACATACTTTAGAGTA 58.423 37.037 2.46 0.00 42.30 2.59
6331 6864 9.890629 TTAGAGTATACATTCACTCATTTTGCT 57.109 29.630 5.50 0.00 42.99 3.91
6332 6865 8.430801 AGAGTATACATTCACTCATTTTGCTC 57.569 34.615 5.50 0.00 42.99 4.26
6333 6866 7.497249 AGAGTATACATTCACTCATTTTGCTCC 59.503 37.037 5.50 0.00 42.99 4.70
6334 6867 3.837213 ACATTCACTCATTTTGCTCCG 57.163 42.857 0.00 0.00 0.00 4.63
6335 6868 3.149196 ACATTCACTCATTTTGCTCCGT 58.851 40.909 0.00 0.00 0.00 4.69
6336 6869 4.323417 ACATTCACTCATTTTGCTCCGTA 58.677 39.130 0.00 0.00 0.00 4.02
6337 6870 4.943705 ACATTCACTCATTTTGCTCCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
6338 6871 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6339 6872 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6340 6873 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6341 6874 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6342 6875 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6343 6876 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6344 6877 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6345 6878 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
6346 6879 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
6347 6880 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
6348 6881 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6349 6882 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6350 6883 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6351 6884 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6352 6885 4.174009 CTCCGTATGTAGTCACTTGTTGG 58.826 47.826 0.00 0.00 0.00 3.77
6353 6886 3.827876 TCCGTATGTAGTCACTTGTTGGA 59.172 43.478 0.00 0.00 0.00 3.53
6354 6887 4.281435 TCCGTATGTAGTCACTTGTTGGAA 59.719 41.667 0.00 0.00 0.00 3.53
6355 6888 5.046878 TCCGTATGTAGTCACTTGTTGGAAT 60.047 40.000 0.00 0.00 0.00 3.01
6356 6889 5.291128 CCGTATGTAGTCACTTGTTGGAATC 59.709 44.000 0.00 0.00 0.00 2.52
6357 6890 6.100004 CGTATGTAGTCACTTGTTGGAATCT 58.900 40.000 0.00 0.00 0.00 2.40
6358 6891 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
6359 6892 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
6360 6893 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
6361 6894 7.297936 TGTAGTCACTTGTTGGAATCTCTAA 57.702 36.000 0.00 0.00 0.00 2.10
6362 6895 7.732025 TGTAGTCACTTGTTGGAATCTCTAAA 58.268 34.615 0.00 0.00 0.00 1.85
6363 6896 8.208224 TGTAGTCACTTGTTGGAATCTCTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
6364 6897 9.052759 GTAGTCACTTGTTGGAATCTCTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
6365 6898 8.159344 AGTCACTTGTTGGAATCTCTAAAAAG 57.841 34.615 2.17 2.17 37.94 2.27
6366 6899 7.993183 AGTCACTTGTTGGAATCTCTAAAAAGA 59.007 33.333 9.03 0.00 35.06 2.52
6367 6900 8.070769 GTCACTTGTTGGAATCTCTAAAAAGAC 58.929 37.037 9.03 0.00 35.06 3.01
6368 6901 7.993183 TCACTTGTTGGAATCTCTAAAAAGACT 59.007 33.333 9.03 0.00 35.06 3.24
6369 6902 8.624776 CACTTGTTGGAATCTCTAAAAAGACTT 58.375 33.333 9.03 0.00 35.06 3.01
6370 6903 9.847224 ACTTGTTGGAATCTCTAAAAAGACTTA 57.153 29.630 9.03 0.00 35.06 2.24
6386 6919 8.581253 AAAAGACTTATATTTGGGAACAGAGG 57.419 34.615 0.00 0.00 44.54 3.69
6387 6920 6.253946 AGACTTATATTTGGGAACAGAGGG 57.746 41.667 0.00 0.00 44.54 4.30
6388 6921 5.970640 AGACTTATATTTGGGAACAGAGGGA 59.029 40.000 0.00 0.00 44.54 4.20
6389 6922 6.100424 AGACTTATATTTGGGAACAGAGGGAG 59.900 42.308 0.00 0.00 44.54 4.30
6390 6923 5.731678 ACTTATATTTGGGAACAGAGGGAGT 59.268 40.000 0.00 0.00 44.54 3.85
6391 6924 6.906901 ACTTATATTTGGGAACAGAGGGAGTA 59.093 38.462 0.00 0.00 44.54 2.59
6392 6925 7.572861 ACTTATATTTGGGAACAGAGGGAGTAT 59.427 37.037 0.00 0.00 44.54 2.12
6393 6926 6.848562 ATATTTGGGAACAGAGGGAGTATT 57.151 37.500 0.00 0.00 44.54 1.89
6394 6927 5.536497 ATTTGGGAACAGAGGGAGTATTT 57.464 39.130 0.00 0.00 44.54 1.40
6395 6928 4.301072 TTGGGAACAGAGGGAGTATTTG 57.699 45.455 0.00 0.00 44.54 2.32
6396 6929 2.576191 TGGGAACAGAGGGAGTATTTGG 59.424 50.000 0.00 0.00 35.01 3.28
6397 6930 2.576648 GGGAACAGAGGGAGTATTTGGT 59.423 50.000 0.00 0.00 0.00 3.67
6398 6931 3.010250 GGGAACAGAGGGAGTATTTGGTT 59.990 47.826 0.00 0.00 0.00 3.67
6399 6932 4.226620 GGGAACAGAGGGAGTATTTGGTTA 59.773 45.833 0.00 0.00 0.00 2.85
6400 6933 5.280830 GGGAACAGAGGGAGTATTTGGTTAA 60.281 44.000 0.00 0.00 0.00 2.01
6401 6934 5.880887 GGAACAGAGGGAGTATTTGGTTAAG 59.119 44.000 0.00 0.00 0.00 1.85
6402 6935 6.449830 AACAGAGGGAGTATTTGGTTAAGT 57.550 37.500 0.00 0.00 0.00 2.24
6403 6936 5.805728 ACAGAGGGAGTATTTGGTTAAGTG 58.194 41.667 0.00 0.00 0.00 3.16
6404 6937 5.186198 CAGAGGGAGTATTTGGTTAAGTGG 58.814 45.833 0.00 0.00 0.00 4.00
6405 6938 4.850386 AGAGGGAGTATTTGGTTAAGTGGT 59.150 41.667 0.00 0.00 0.00 4.16
6406 6939 5.312443 AGAGGGAGTATTTGGTTAAGTGGTT 59.688 40.000 0.00 0.00 0.00 3.67
6407 6940 5.960704 AGGGAGTATTTGGTTAAGTGGTTT 58.039 37.500 0.00 0.00 0.00 3.27
6408 6941 6.378745 AGGGAGTATTTGGTTAAGTGGTTTT 58.621 36.000 0.00 0.00 0.00 2.43
6409 6942 7.528675 AGGGAGTATTTGGTTAAGTGGTTTTA 58.471 34.615 0.00 0.00 0.00 1.52
6410 6943 8.174757 AGGGAGTATTTGGTTAAGTGGTTTTAT 58.825 33.333 0.00 0.00 0.00 1.40
6411 6944 8.809066 GGGAGTATTTGGTTAAGTGGTTTTATT 58.191 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 167 7.097834 TGTTTATTTTTCAGTTTTCGTTGGGT 58.902 30.769 0.00 0.00 0.00 4.51
166 168 7.527084 TGTTTATTTTTCAGTTTTCGTTGGG 57.473 32.000 0.00 0.00 0.00 4.12
167 169 9.980780 ATTTGTTTATTTTTCAGTTTTCGTTGG 57.019 25.926 0.00 0.00 0.00 3.77
210 212 7.806014 GGTTTTCTTTGGTTTTGTTCTTTTTCC 59.194 33.333 0.00 0.00 0.00 3.13
247 249 4.755411 TCGGTTTCGCTATTCTCAATTCT 58.245 39.130 0.00 0.00 36.13 2.40
261 263 5.090652 TCTTTGTTTCATTCTCGGTTTCG 57.909 39.130 0.00 0.00 37.82 3.46
276 278 9.103861 TCTTGTTTTTCACTTGTTTTCTTTGTT 57.896 25.926 0.00 0.00 0.00 2.83
368 370 8.820153 TTATTTACCGGCTTTCCCTATTTTTA 57.180 30.769 0.00 0.00 0.00 1.52
375 377 4.036941 TGTTTATTTACCGGCTTTCCCT 57.963 40.909 0.00 0.00 0.00 4.20
376 378 4.787260 TTGTTTATTTACCGGCTTTCCC 57.213 40.909 0.00 0.00 0.00 3.97
382 384 8.300495 TCAATTTTCTTTGTTTATTTACCGGC 57.700 30.769 0.00 0.00 0.00 6.13
462 464 3.708563 TTCTTCGGGCTTTCTTTGTTG 57.291 42.857 0.00 0.00 0.00 3.33
509 516 1.705256 TTCGCTCGTTCGCTATGTTT 58.295 45.000 0.00 0.00 0.00 2.83
512 519 2.905546 CTCTATTCGCTCGTTCGCTATG 59.094 50.000 0.00 0.00 0.00 2.23
514 521 1.333881 GCTCTATTCGCTCGTTCGCTA 60.334 52.381 0.00 0.00 0.00 4.26
515 522 0.592754 GCTCTATTCGCTCGTTCGCT 60.593 55.000 0.00 0.00 0.00 4.93
516 523 1.840716 GCTCTATTCGCTCGTTCGC 59.159 57.895 0.00 0.00 0.00 4.70
517 524 0.315951 TCGCTCTATTCGCTCGTTCG 60.316 55.000 0.00 0.00 0.00 3.95
518 525 1.114047 GTCGCTCTATTCGCTCGTTC 58.886 55.000 0.00 0.00 0.00 3.95
519 526 0.450583 TGTCGCTCTATTCGCTCGTT 59.549 50.000 0.00 0.00 0.00 3.85
521 528 0.840729 GTTGTCGCTCTATTCGCTCG 59.159 55.000 0.00 0.00 0.00 5.03
522 529 0.840729 CGTTGTCGCTCTATTCGCTC 59.159 55.000 0.00 0.00 0.00 5.03
523 530 0.450583 TCGTTGTCGCTCTATTCGCT 59.549 50.000 0.00 0.00 36.96 4.93
525 532 0.840729 GCTCGTTGTCGCTCTATTCG 59.159 55.000 0.00 0.00 36.96 3.34
529 536 0.879090 TCTTGCTCGTTGTCGCTCTA 59.121 50.000 0.00 0.00 36.96 2.43
539 546 1.702886 CACGTTGATCTCTTGCTCGT 58.297 50.000 0.00 0.00 0.00 4.18
543 550 0.790207 TTCGCACGTTGATCTCTTGC 59.210 50.000 0.00 2.40 0.00 4.01
544 551 3.519908 TTTTCGCACGTTGATCTCTTG 57.480 42.857 0.00 0.00 0.00 3.02
557 564 0.388659 AAGCTGCCACATTTTTCGCA 59.611 45.000 0.00 0.00 0.00 5.10
570 577 1.130373 TGCGCTACAATAACAAGCTGC 59.870 47.619 9.73 0.00 36.78 5.25
572 579 2.932614 CTCTGCGCTACAATAACAAGCT 59.067 45.455 9.73 0.00 34.03 3.74
575 582 5.933187 TTTTCTCTGCGCTACAATAACAA 57.067 34.783 9.73 0.00 0.00 2.83
622 629 1.460504 ATACTCCGCTTCACGTGAGA 58.539 50.000 19.11 11.46 39.81 3.27
626 633 0.246635 AGCAATACTCCGCTTCACGT 59.753 50.000 0.00 0.00 41.42 4.49
636 643 2.996621 GCATATCACGGGAGCAATACTC 59.003 50.000 0.00 0.00 45.45 2.59
637 644 2.610479 CGCATATCACGGGAGCAATACT 60.610 50.000 0.00 0.00 0.00 2.12
638 645 1.726791 CGCATATCACGGGAGCAATAC 59.273 52.381 0.00 0.00 0.00 1.89
649 656 4.961511 TCCGGCGCCGCATATCAC 62.962 66.667 42.39 3.49 38.24 3.06
650 657 3.741830 TTTCCGGCGCCGCATATCA 62.742 57.895 42.39 19.35 38.24 2.15
653 660 2.746671 TTTTTCCGGCGCCGCATA 60.747 55.556 42.39 26.51 38.24 3.14
664 671 0.955905 TAGCTTGCACGGGTTTTTCC 59.044 50.000 0.00 0.00 0.00 3.13
670 677 0.666374 GTTTTGTAGCTTGCACGGGT 59.334 50.000 0.00 0.00 0.00 5.28
671 678 0.665835 TGTTTTGTAGCTTGCACGGG 59.334 50.000 0.00 0.00 0.00 5.28
673 680 2.755836 ACTGTTTTGTAGCTTGCACG 57.244 45.000 0.00 0.00 0.00 5.34
674 681 4.027572 TGAACTGTTTTGTAGCTTGCAC 57.972 40.909 0.00 0.00 0.00 4.57
679 686 2.230660 GGGCTGAACTGTTTTGTAGCT 58.769 47.619 14.82 0.00 0.00 3.32
685 692 3.228188 TCTCATGGGCTGAACTGTTTT 57.772 42.857 0.00 0.00 32.14 2.43
692 699 4.371624 TTCTCTTTTCTCATGGGCTGAA 57.628 40.909 0.00 0.00 32.14 3.02
693 700 4.074970 GTTTCTCTTTTCTCATGGGCTGA 58.925 43.478 0.00 0.00 0.00 4.26
694 701 3.192212 GGTTTCTCTTTTCTCATGGGCTG 59.808 47.826 0.00 0.00 0.00 4.85
696 703 3.057245 GTGGTTTCTCTTTTCTCATGGGC 60.057 47.826 0.00 0.00 0.00 5.36
697 704 4.217118 CAGTGGTTTCTCTTTTCTCATGGG 59.783 45.833 0.00 0.00 0.00 4.00
698 705 5.065914 TCAGTGGTTTCTCTTTTCTCATGG 58.934 41.667 0.00 0.00 0.00 3.66
699 706 6.624352 TTCAGTGGTTTCTCTTTTCTCATG 57.376 37.500 0.00 0.00 0.00 3.07
700 707 7.056635 TCTTTCAGTGGTTTCTCTTTTCTCAT 58.943 34.615 0.00 0.00 0.00 2.90
701 708 6.414732 TCTTTCAGTGGTTTCTCTTTTCTCA 58.585 36.000 0.00 0.00 0.00 3.27
704 711 8.244113 TCTTTTCTTTCAGTGGTTTCTCTTTTC 58.756 33.333 0.00 0.00 0.00 2.29
705 712 8.122472 TCTTTTCTTTCAGTGGTTTCTCTTTT 57.878 30.769 0.00 0.00 0.00 2.27
706 713 7.703058 TCTTTTCTTTCAGTGGTTTCTCTTT 57.297 32.000 0.00 0.00 0.00 2.52
707 714 7.703058 TTCTTTTCTTTCAGTGGTTTCTCTT 57.297 32.000 0.00 0.00 0.00 2.85
708 715 7.777440 AGATTCTTTTCTTTCAGTGGTTTCTCT 59.223 33.333 0.00 0.00 0.00 3.10
709 716 7.935520 AGATTCTTTTCTTTCAGTGGTTTCTC 58.064 34.615 0.00 0.00 0.00 2.87
710 717 7.888250 AGATTCTTTTCTTTCAGTGGTTTCT 57.112 32.000 0.00 0.00 0.00 2.52
711 718 8.932945 AAAGATTCTTTTCTTTCAGTGGTTTC 57.067 30.769 5.82 0.00 41.01 2.78
753 760 5.867903 ATGTCATCGAGGATTCTCTTCTT 57.132 39.130 1.86 0.00 37.86 2.52
758 765 4.446371 ACCAAATGTCATCGAGGATTCTC 58.554 43.478 1.86 0.00 36.69 2.87
767 774 5.737290 GGATTTTTACGACCAAATGTCATCG 59.263 40.000 0.00 0.00 44.71 3.84
782 789 7.840931 ACAGGATTCCATCAAAGGATTTTTAC 58.159 34.615 5.29 0.00 35.03 2.01
783 790 8.434589 AACAGGATTCCATCAAAGGATTTTTA 57.565 30.769 5.29 0.00 35.03 1.52
855 868 5.621228 GCGTTTGCAAATATCTATGTGTAGC 59.379 40.000 16.21 0.00 42.15 3.58
859 872 3.418619 GCGCGTTTGCAAATATCTATGTG 59.581 43.478 16.21 5.09 42.97 3.21
863 876 1.332375 GGGCGCGTTTGCAAATATCTA 59.668 47.619 16.21 0.00 42.97 1.98
864 877 0.100503 GGGCGCGTTTGCAAATATCT 59.899 50.000 16.21 0.00 42.97 1.98
904 997 3.462678 GGGGACGGACAGAGGAGC 61.463 72.222 0.00 0.00 0.00 4.70
905 998 2.760385 GGGGGACGGACAGAGGAG 60.760 72.222 0.00 0.00 0.00 3.69
950 1044 4.890306 GGGAGGGAGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
954 1048 3.837213 GATCGGGGAGGGAGGGAGG 62.837 73.684 0.00 0.00 0.00 4.30
956 1050 3.846254 GGATCGGGGAGGGAGGGA 61.846 72.222 0.00 0.00 0.00 4.20
1619 1762 3.613689 GAGCCGGATCCGTACCCC 61.614 72.222 31.22 14.27 37.81 4.95
1859 2014 3.256960 GCCCTCACCACCTTGGGA 61.257 66.667 0.00 0.00 43.37 4.37
2035 2202 4.431809 CCACTGAGAAGTGAGAATAGCAG 58.568 47.826 7.43 0.00 42.02 4.24
2036 2203 3.368843 GCCACTGAGAAGTGAGAATAGCA 60.369 47.826 7.43 0.00 42.02 3.49
2040 2207 4.093011 ACTAGCCACTGAGAAGTGAGAAT 58.907 43.478 7.43 0.00 42.02 2.40
2154 2321 6.389830 TTCAAATTCAAGCTCTAAGCAACA 57.610 33.333 1.29 0.00 45.56 3.33
2155 2322 6.697019 TGTTTCAAATTCAAGCTCTAAGCAAC 59.303 34.615 1.29 0.00 45.56 4.17
2163 2330 6.151817 AGGACCTATGTTTCAAATTCAAGCTC 59.848 38.462 0.00 0.00 0.00 4.09
2170 2337 8.592809 TGCAAATTAGGACCTATGTTTCAAATT 58.407 29.630 0.94 0.00 0.00 1.82
2173 2340 7.531857 TTGCAAATTAGGACCTATGTTTCAA 57.468 32.000 0.94 4.21 0.00 2.69
2174 2341 7.546358 CATTGCAAATTAGGACCTATGTTTCA 58.454 34.615 1.71 0.00 0.00 2.69
2176 2343 6.340522 GCATTGCAAATTAGGACCTATGTTT 58.659 36.000 1.71 4.50 0.00 2.83
2184 2351 1.476488 ACCCGCATTGCAAATTAGGAC 59.524 47.619 1.71 0.00 0.00 3.85
2186 2353 3.791973 TTACCCGCATTGCAAATTAGG 57.208 42.857 1.71 5.27 0.00 2.69
2187 2354 6.075099 CGTTATTTACCCGCATTGCAAATTAG 60.075 38.462 1.71 0.00 0.00 1.73
2188 2355 5.744345 CGTTATTTACCCGCATTGCAAATTA 59.256 36.000 1.71 0.00 0.00 1.40
2197 2364 0.107116 TGCCCGTTATTTACCCGCAT 60.107 50.000 0.00 0.00 0.00 4.73
2198 2365 0.745128 CTGCCCGTTATTTACCCGCA 60.745 55.000 0.00 0.00 0.00 5.69
2199 2366 2.019337 CTGCCCGTTATTTACCCGC 58.981 57.895 0.00 0.00 0.00 6.13
2200 2367 0.745128 TGCTGCCCGTTATTTACCCG 60.745 55.000 0.00 0.00 0.00 5.28
2213 2380 3.691609 AGTTAGCAAGTTTATCTGCTGCC 59.308 43.478 6.82 0.00 38.19 4.85
2242 2410 8.874816 GTTGTAACCTTTTTGTCAAAGCATAAA 58.125 29.630 0.00 0.00 0.00 1.40
2281 2450 2.519771 AGCTCCTTGCATCAATTGGA 57.480 45.000 5.42 0.00 45.94 3.53
2283 2452 3.921677 ACAAAGCTCCTTGCATCAATTG 58.078 40.909 0.00 0.00 45.94 2.32
2336 2525 5.525745 CCCATTCAAAAACTACCCAACAAAC 59.474 40.000 0.00 0.00 0.00 2.93
2376 2565 1.127567 ACCTAGACTTGCAGGCCACA 61.128 55.000 5.01 0.00 35.14 4.17
2382 2571 5.392767 TTTCTACTGACCTAGACTTGCAG 57.607 43.478 0.00 0.00 0.00 4.41
2385 2574 4.382147 GGCCTTTCTACTGACCTAGACTTG 60.382 50.000 0.00 0.00 0.00 3.16
2399 2588 3.908103 ACAACCTCTACTTGGCCTTTCTA 59.092 43.478 3.32 0.00 0.00 2.10
2401 2590 3.141767 ACAACCTCTACTTGGCCTTTC 57.858 47.619 3.32 0.00 0.00 2.62
2417 2606 9.278734 GCAGTTGATTAGCTAAGAATTAACAAC 57.721 33.333 12.54 15.76 36.02 3.32
2450 2639 4.982241 TCCATCCCCTGATTCTTCATAC 57.018 45.455 0.00 0.00 0.00 2.39
2454 2643 6.779539 ACAAAATATCCATCCCCTGATTCTTC 59.220 38.462 0.00 0.00 0.00 2.87
2463 2652 7.839680 ACTAATCAACAAAATATCCATCCCC 57.160 36.000 0.00 0.00 0.00 4.81
2520 2709 3.878778 ACTCCAGTATGCAATGAAGTCC 58.121 45.455 0.00 0.00 31.97 3.85
2533 2722 6.430308 CACAACAACTCTACTCTACTCCAGTA 59.570 42.308 0.00 0.00 0.00 2.74
2549 2738 3.128589 CCAAGTACAACAGCACAACAACT 59.871 43.478 0.00 0.00 0.00 3.16
2556 2745 1.403679 TGCAACCAAGTACAACAGCAC 59.596 47.619 0.00 0.00 0.00 4.40
2577 2766 8.306313 TCTCAGTTGATTACTCTAGGCAATTA 57.694 34.615 0.00 0.00 33.85 1.40
2578 2767 7.187824 TCTCAGTTGATTACTCTAGGCAATT 57.812 36.000 0.00 0.00 33.85 2.32
2598 2787 7.334421 GTGCAAAAGGATAAGTAGTGATTCTCA 59.666 37.037 0.00 0.00 0.00 3.27
2609 2798 3.058224 GCGTGAAGTGCAAAAGGATAAGT 60.058 43.478 0.00 0.00 0.00 2.24
2616 2805 0.381801 ACCTGCGTGAAGTGCAAAAG 59.618 50.000 0.00 0.00 42.70 2.27
2622 2811 0.738389 AAACCAACCTGCGTGAAGTG 59.262 50.000 0.00 0.00 0.00 3.16
2625 2814 0.394488 TCCAAACCAACCTGCGTGAA 60.394 50.000 0.00 0.00 0.00 3.18
2629 2818 1.586028 CCATCCAAACCAACCTGCG 59.414 57.895 0.00 0.00 0.00 5.18
2696 2885 4.838423 TCCCATCTAGTCACAGTTTCAAGA 59.162 41.667 0.00 0.00 0.00 3.02
2708 2897 4.579340 TCGTGACTTACATCCCATCTAGTC 59.421 45.833 0.00 0.00 34.17 2.59
3170 3363 1.668294 CTCAGTCACGGGCTTCACT 59.332 57.895 0.00 0.00 0.00 3.41
3218 3411 3.058501 AGGCCTCATTTCAAACGTAAACG 60.059 43.478 0.00 0.04 46.33 3.60
3276 3470 9.140286 GGCTCTATAAAATTTCAAACTGGAAAC 57.860 33.333 0.00 0.00 39.40 2.78
3313 3507 7.060421 TGGGCAATAATTAAGTTAGAGAAGGG 58.940 38.462 0.00 0.00 0.00 3.95
3318 3512 9.736023 GACAAATGGGCAATAATTAAGTTAGAG 57.264 33.333 0.00 0.00 0.00 2.43
3337 3531 7.894376 AAGCAACAAATATTCCAGACAAATG 57.106 32.000 0.00 0.00 0.00 2.32
3397 3591 4.574892 TCATTCGTCCAAGCAAAGTGATA 58.425 39.130 0.00 0.00 0.00 2.15
3400 3594 3.558505 CTTCATTCGTCCAAGCAAAGTG 58.441 45.455 0.00 0.00 0.00 3.16
3405 3599 1.002430 AGAGCTTCATTCGTCCAAGCA 59.998 47.619 5.73 0.00 44.24 3.91
3411 3605 2.072298 ACTGCAAGAGCTTCATTCGTC 58.928 47.619 0.00 0.00 42.74 4.20
3414 3608 3.911661 AACACTGCAAGAGCTTCATTC 57.088 42.857 0.00 0.00 42.74 2.67
3415 3609 4.660789 AAAACACTGCAAGAGCTTCATT 57.339 36.364 0.00 0.00 42.74 2.57
3510 3704 8.757982 AATTAGTTTCTGCCATGATAAGATGT 57.242 30.769 0.00 0.00 0.00 3.06
3551 3745 2.559231 TGCATTTGTGATCACACTGCAT 59.441 40.909 37.43 23.07 46.42 3.96
3565 3759 4.578516 TCCTAAATACCATCCGTGCATTTG 59.421 41.667 0.00 0.00 0.00 2.32
3577 3771 7.554959 ACTCTTGACTTTCTCCTAAATACCA 57.445 36.000 0.00 0.00 0.00 3.25
3615 3809 8.909923 ACAATATTGGGTAAGCCAAGTAAATAC 58.090 33.333 19.37 0.00 36.17 1.89
3650 3969 5.178797 AGTCGTCTGAAAACAGGATATTGG 58.821 41.667 0.00 0.00 0.00 3.16
3664 3983 1.480954 GGGAAGCCATAAGTCGTCTGA 59.519 52.381 0.00 0.00 0.00 3.27
3666 3985 1.568504 TGGGAAGCCATAAGTCGTCT 58.431 50.000 0.00 0.00 0.00 4.18
3670 3989 3.763897 ACACAATTGGGAAGCCATAAGTC 59.236 43.478 16.31 0.00 0.00 3.01
3671 3990 3.778265 ACACAATTGGGAAGCCATAAGT 58.222 40.909 16.31 0.00 0.00 2.24
3672 3991 4.806640 AACACAATTGGGAAGCCATAAG 57.193 40.909 16.31 0.00 0.00 1.73
3686 4006 6.772233 TGCAGCCATGAACTATATAACACAAT 59.228 34.615 0.00 0.00 0.00 2.71
3694 4014 8.526147 GGAAAATATTGCAGCCATGAACTATAT 58.474 33.333 0.00 0.00 0.00 0.86
3765 4086 0.308993 GTGCAGAGAACAAGCCACAC 59.691 55.000 0.00 0.00 0.00 3.82
3801 4122 2.288666 ACAACGTCACATGAAAGCACT 58.711 42.857 0.00 0.00 0.00 4.40
3804 4125 2.806244 AGGTACAACGTCACATGAAAGC 59.194 45.455 0.00 0.00 0.00 3.51
3808 4129 1.606994 GCCAGGTACAACGTCACATGA 60.607 52.381 0.00 0.00 0.00 3.07
3813 4134 0.882927 GCAAGCCAGGTACAACGTCA 60.883 55.000 0.00 0.00 0.00 4.35
3816 4137 0.884704 ACAGCAAGCCAGGTACAACG 60.885 55.000 0.00 0.00 0.00 4.10
3850 4171 0.979665 TTCAGTGGGGCAGAAGAGAG 59.020 55.000 0.00 0.00 0.00 3.20
3875 4196 7.533289 ACTGATAGAGTAGCTAAGGATTTCC 57.467 40.000 0.00 0.00 30.86 3.13
3894 4215 8.912988 CCCAAAAACATGTAACCATATACTGAT 58.087 33.333 0.00 0.00 0.00 2.90
3927 4249 4.565028 GGATAAGAACACGGAAAGAAGGGT 60.565 45.833 0.00 0.00 0.00 4.34
3939 4261 5.638596 AAAACCCGAATGGATAAGAACAC 57.361 39.130 0.00 0.00 37.49 3.32
3967 4292 3.495193 CAGAAAACAAGATGATGCCACG 58.505 45.455 0.00 0.00 0.00 4.94
4017 4342 1.745087 CAGGCCGTGCATTTATTGACT 59.255 47.619 0.00 0.00 0.00 3.41
4075 4400 7.490079 TCATCAACATCTCAAATAGCAAAATGC 59.510 33.333 0.00 0.00 45.46 3.56
4086 4411 8.032451 TGAAGTATACGTCATCAACATCTCAAA 58.968 33.333 16.26 0.00 29.71 2.69
4102 4427 9.698309 ATTAAAGAGATGGATGTGAAGTATACG 57.302 33.333 0.00 0.00 0.00 3.06
4111 4436 9.865321 AATTCACAAATTAAAGAGATGGATGTG 57.135 29.630 0.00 0.00 37.55 3.21
4125 4450 9.926158 ATGCTGAATGTACAAATTCACAAATTA 57.074 25.926 7.64 0.00 40.72 1.40
4127 4452 8.089597 TGATGCTGAATGTACAAATTCACAAAT 58.910 29.630 7.64 3.19 40.72 2.32
4128 4453 7.381948 GTGATGCTGAATGTACAAATTCACAAA 59.618 33.333 7.64 0.00 40.72 2.83
4169 4494 5.133264 GTGCACTTATCGCAGAAAATATCG 58.867 41.667 10.32 0.00 43.58 2.92
4279 4604 7.172190 CACAACTATGACTGCAATATAAGAGGG 59.828 40.741 0.00 0.00 0.00 4.30
4324 4649 1.194772 GCTCACTAAACAGCACGGAAC 59.805 52.381 0.00 0.00 35.56 3.62
4327 4652 2.912986 TGCTCACTAAACAGCACGG 58.087 52.632 0.00 0.00 40.80 4.94
4332 4664 1.825090 TGCCCATGCTCACTAAACAG 58.175 50.000 0.00 0.00 38.71 3.16
4349 4681 6.768381 AGTATACCAAGAGGCTCTTTTATTGC 59.232 38.462 26.62 18.57 33.78 3.56
4360 4692 5.340439 AAGTACACAGTATACCAAGAGGC 57.660 43.478 0.00 0.00 39.06 4.70
4364 4696 9.701098 TGAAGTTTAAGTACACAGTATACCAAG 57.299 33.333 0.00 0.00 0.00 3.61
4444 4823 3.726557 TTCAATGAGTGATGAAGCCCT 57.273 42.857 0.00 0.00 35.70 5.19
4532 4911 1.545582 GCACACCCAACATGCAGTAAT 59.454 47.619 0.00 0.00 39.23 1.89
4565 4955 1.481871 GTCATACCCTCCACCTTCGA 58.518 55.000 0.00 0.00 0.00 3.71
4566 4956 0.464452 GGTCATACCCTCCACCTTCG 59.536 60.000 0.00 0.00 30.04 3.79
4573 4963 3.542648 GCTAACAAAGGTCATACCCTCC 58.457 50.000 0.00 0.00 39.75 4.30
4575 4965 2.093128 CGGCTAACAAAGGTCATACCCT 60.093 50.000 0.00 0.00 39.75 4.34
4578 4968 4.748600 GGTATCGGCTAACAAAGGTCATAC 59.251 45.833 0.00 0.00 0.00 2.39
4582 4972 2.934553 GTGGTATCGGCTAACAAAGGTC 59.065 50.000 0.00 0.00 0.00 3.85
4583 4973 2.355412 GGTGGTATCGGCTAACAAAGGT 60.355 50.000 0.00 0.00 0.00 3.50
4584 4974 2.285977 GGTGGTATCGGCTAACAAAGG 58.714 52.381 0.00 0.00 0.00 3.11
4585 4975 2.285977 GGGTGGTATCGGCTAACAAAG 58.714 52.381 0.00 0.00 0.00 2.77
4586 4976 1.629353 TGGGTGGTATCGGCTAACAAA 59.371 47.619 0.00 0.00 0.00 2.83
4589 4979 0.538118 TGTGGGTGGTATCGGCTAAC 59.462 55.000 0.00 0.00 0.00 2.34
4618 5008 7.816640 TGCTTTTGTCCTTAAACATGATACTC 58.183 34.615 0.00 0.00 0.00 2.59
4622 5012 5.244626 AGCTGCTTTTGTCCTTAAACATGAT 59.755 36.000 0.00 0.00 0.00 2.45
4647 5037 1.013596 TGCTCGCATTAAACATCGGG 58.986 50.000 0.00 0.00 0.00 5.14
4650 5040 5.276270 ACATCAATGCTCGCATTAAACATC 58.724 37.500 15.94 0.00 43.92 3.06
4659 5049 1.465777 CACTGAACATCAATGCTCGCA 59.534 47.619 0.00 0.00 0.00 5.10
4661 5051 3.818961 AACACTGAACATCAATGCTCG 57.181 42.857 0.00 0.00 24.25 5.03
4667 5057 5.255397 AGGGGATTAACACTGAACATCAA 57.745 39.130 0.00 0.00 0.00 2.57
4696 5086 2.421424 GCAATGGAAGCTACTTCACAGG 59.579 50.000 9.38 3.89 41.77 4.00
4712 5102 5.345702 CAATAAAGGATGTGGACTGCAATG 58.654 41.667 0.00 0.00 0.00 2.82
4713 5103 4.142093 GCAATAAAGGATGTGGACTGCAAT 60.142 41.667 0.00 0.00 0.00 3.56
4722 5112 5.975344 CAGTAGCAATGCAATAAAGGATGTG 59.025 40.000 8.35 0.00 0.00 3.21
4803 5206 6.049790 AGAAACTTCAGCCTATCGGAATAAC 58.950 40.000 0.00 0.00 0.00 1.89
4804 5207 6.235231 AGAAACTTCAGCCTATCGGAATAA 57.765 37.500 0.00 0.00 0.00 1.40
4854 5259 2.290367 CTGAACAACAGGTCGATTTGCA 59.710 45.455 0.00 0.00 42.39 4.08
4950 5355 9.878667 TGCTGTGTAATTACTGTAAGCTATAAA 57.121 29.630 16.33 2.52 37.60 1.40
4951 5356 9.309516 GTGCTGTGTAATTACTGTAAGCTATAA 57.690 33.333 16.33 2.82 37.60 0.98
4963 5368 6.136071 CAGTCAAGTTGTGCTGTGTAATTAC 58.864 40.000 8.75 8.75 30.96 1.89
4966 5371 3.565482 CCAGTCAAGTTGTGCTGTGTAAT 59.435 43.478 20.30 0.00 32.59 1.89
4970 5375 1.667236 TCCAGTCAAGTTGTGCTGTG 58.333 50.000 20.30 14.78 32.59 3.66
4974 5379 8.810652 TTATTTTAAATCCAGTCAAGTTGTGC 57.189 30.769 2.11 0.00 0.00 4.57
5015 5427 4.468713 TCCTGTATCAGACCAGAGATCAG 58.531 47.826 0.00 0.00 32.44 2.90
5093 5505 3.503363 TGAAGAGGACACATGTGAAATGC 59.497 43.478 31.94 15.09 0.00 3.56
5105 5517 6.875726 CAGAATAGTGAACAATGAAGAGGACA 59.124 38.462 0.00 0.00 0.00 4.02
5142 5554 1.408702 CCAAGGAACCAACCAACACAG 59.591 52.381 0.00 0.00 0.00 3.66
5253 5665 2.816087 CAGTCATGAAAAGGGGTGTGAG 59.184 50.000 0.00 0.00 0.00 3.51
5259 5671 3.960571 AGTCATCAGTCATGAAAAGGGG 58.039 45.455 0.00 0.00 43.52 4.79
5292 5704 1.024046 TGGGTTTGGATGTCGATGCG 61.024 55.000 0.00 0.00 0.00 4.73
5304 5716 5.185056 CCTTGGGTTAGATAAACTGGGTTTG 59.815 44.000 5.99 0.00 36.37 2.93
5309 5721 6.376299 GGTTTACCTTGGGTTAGATAAACTGG 59.624 42.308 10.08 0.00 38.23 4.00
5311 5723 7.093965 TGGTTTACCTTGGGTTAGATAAACT 57.906 36.000 0.00 0.00 37.09 2.66
5313 5725 6.720748 GGTTGGTTTACCTTGGGTTAGATAAA 59.279 38.462 0.00 0.00 37.09 1.40
5314 5726 6.247676 GGTTGGTTTACCTTGGGTTAGATAA 58.752 40.000 0.00 0.00 37.09 1.75
5316 5728 4.509663 GGGTTGGTTTACCTTGGGTTAGAT 60.510 45.833 0.00 0.00 38.30 1.98
5318 5730 3.159472 GGGTTGGTTTACCTTGGGTTAG 58.841 50.000 0.00 0.00 38.30 2.34
5319 5731 2.790585 AGGGTTGGTTTACCTTGGGTTA 59.209 45.455 0.00 0.00 38.30 2.85
5320 5732 1.576757 AGGGTTGGTTTACCTTGGGTT 59.423 47.619 0.00 0.00 38.30 4.11
5321 5733 1.237661 AGGGTTGGTTTACCTTGGGT 58.762 50.000 0.00 0.00 38.30 4.51
5323 5735 2.631062 GGAAAGGGTTGGTTTACCTTGG 59.369 50.000 0.00 0.00 43.49 3.61
5324 5736 3.572642 AGGAAAGGGTTGGTTTACCTTG 58.427 45.455 0.00 0.00 43.49 3.61
5325 5737 3.985553 AGGAAAGGGTTGGTTTACCTT 57.014 42.857 0.00 0.00 46.09 3.50
5326 5738 3.723154 TGTAGGAAAGGGTTGGTTTACCT 59.277 43.478 0.00 0.00 38.30 3.08
5327 5739 4.077108 CTGTAGGAAAGGGTTGGTTTACC 58.923 47.826 0.00 0.00 37.47 2.85
5329 5741 3.723154 ACCTGTAGGAAAGGGTTGGTTTA 59.277 43.478 4.64 0.00 39.30 2.01
5330 5742 2.516702 ACCTGTAGGAAAGGGTTGGTTT 59.483 45.455 4.64 0.00 39.30 3.27
5331 5743 2.141067 ACCTGTAGGAAAGGGTTGGTT 58.859 47.619 4.64 0.00 39.30 3.67
5332 5744 1.423921 CACCTGTAGGAAAGGGTTGGT 59.576 52.381 4.64 0.00 39.30 3.67
5333 5745 1.886655 GCACCTGTAGGAAAGGGTTGG 60.887 57.143 4.64 0.00 39.30 3.77
5394 5806 1.228552 GAGGAAAGGGTGCTGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
5433 5845 0.827925 TCTGAGCGACTTGTGGGACT 60.828 55.000 0.00 0.00 0.00 3.85
5434 5846 0.247736 ATCTGAGCGACTTGTGGGAC 59.752 55.000 0.00 0.00 0.00 4.46
5435 5847 0.532573 GATCTGAGCGACTTGTGGGA 59.467 55.000 0.00 0.00 0.00 4.37
5437 5849 1.476085 AGAGATCTGAGCGACTTGTGG 59.524 52.381 0.00 0.00 0.00 4.17
5438 5850 2.937469 AGAGATCTGAGCGACTTGTG 57.063 50.000 0.00 0.00 0.00 3.33
5439 5851 2.165437 GGAAGAGATCTGAGCGACTTGT 59.835 50.000 0.00 0.00 0.00 3.16
5440 5852 2.794282 CGGAAGAGATCTGAGCGACTTG 60.794 54.545 0.00 0.00 36.44 3.16
5441 5853 1.403679 CGGAAGAGATCTGAGCGACTT 59.596 52.381 0.00 7.77 36.44 3.01
5442 5854 1.021202 CGGAAGAGATCTGAGCGACT 58.979 55.000 0.00 0.00 36.44 4.18
5453 5865 1.208052 CAGGGATCAAAGCGGAAGAGA 59.792 52.381 0.00 0.00 0.00 3.10
5461 5873 3.465871 GATCTCTGACAGGGATCAAAGC 58.534 50.000 31.94 11.85 36.73 3.51
5477 5889 4.593864 GGCGAGCACGGGGATCTC 62.594 72.222 5.52 0.00 40.15 2.75
5487 5899 2.125552 CAATGACCTCGGCGAGCA 60.126 61.111 30.55 23.42 0.00 4.26
5492 5904 1.817099 CTGGAGCAATGACCTCGGC 60.817 63.158 0.00 0.00 0.00 5.54
5493 5905 0.460987 GACTGGAGCAATGACCTCGG 60.461 60.000 0.00 0.00 0.00 4.63
5499 5911 0.969149 ACGACTGACTGGAGCAATGA 59.031 50.000 0.00 0.00 0.00 2.57
5501 5913 0.969149 TGACGACTGACTGGAGCAAT 59.031 50.000 0.00 0.00 0.00 3.56
5511 5923 1.795768 GCCACAAAGATGACGACTGA 58.204 50.000 0.00 0.00 0.00 3.41
5517 5929 1.523758 AAGGTCGCCACAAAGATGAC 58.476 50.000 0.00 0.00 0.00 3.06
5525 5937 1.290955 CGGACTAAAGGTCGCCACA 59.709 57.895 0.00 0.00 45.35 4.17
5692 6108 7.698506 ACATCACATCTCATGAAACTTGAAT 57.301 32.000 0.00 0.00 0.00 2.57
5711 6127 7.237871 GCAACACGTTACATTACATTACATCA 58.762 34.615 0.00 0.00 0.00 3.07
5712 6128 6.406896 CGCAACACGTTACATTACATTACATC 59.593 38.462 0.00 0.00 36.87 3.06
5730 6146 1.843753 CGAGAAAACAAACCGCAACAC 59.156 47.619 0.00 0.00 0.00 3.32
5731 6147 1.795889 GCGAGAAAACAAACCGCAACA 60.796 47.619 0.00 0.00 44.55 3.33
5736 6152 1.656429 CGACTGCGAGAAAACAAACCG 60.656 52.381 0.00 0.00 40.82 4.44
5757 6173 1.625818 AGAGAACGCAAGGGAACTGAT 59.374 47.619 0.00 0.00 42.68 2.90
5896 6314 6.366340 TCCCTCTGTATCGAAATCTAAGACT 58.634 40.000 0.00 0.00 0.00 3.24
5898 6316 6.366340 ACTCCCTCTGTATCGAAATCTAAGA 58.634 40.000 0.00 0.00 0.00 2.10
5945 6363 6.469782 ACAAGTCAATGGTTTCTGAAACAT 57.530 33.333 28.53 18.85 44.95 2.71
5985 6403 2.414138 GACCAATAAACCCGAACAGACG 59.586 50.000 0.00 0.00 0.00 4.18
5986 6404 2.745821 GGACCAATAAACCCGAACAGAC 59.254 50.000 0.00 0.00 0.00 3.51
5987 6405 2.290450 GGGACCAATAAACCCGAACAGA 60.290 50.000 0.00 0.00 34.03 3.41
5988 6406 2.089201 GGGACCAATAAACCCGAACAG 58.911 52.381 0.00 0.00 34.03 3.16
6007 6425 1.381735 GGGCAGAAAATGGGAGGGG 60.382 63.158 0.00 0.00 0.00 4.79
6010 6428 3.986996 AAATTGGGCAGAAAATGGGAG 57.013 42.857 0.00 0.00 0.00 4.30
6013 6431 5.247084 TGATCAAAATTGGGCAGAAAATGG 58.753 37.500 0.00 0.00 0.00 3.16
6014 6432 6.995511 ATGATCAAAATTGGGCAGAAAATG 57.004 33.333 0.00 0.00 0.00 2.32
6015 6433 9.689501 ATTTATGATCAAAATTGGGCAGAAAAT 57.310 25.926 0.00 8.37 31.85 1.82
6016 6434 9.517868 AATTTATGATCAAAATTGGGCAGAAAA 57.482 25.926 19.12 7.12 35.69 2.29
6017 6435 9.517868 AAATTTATGATCAAAATTGGGCAGAAA 57.482 25.926 19.90 9.56 36.81 2.52
6018 6436 8.948145 CAAATTTATGATCAAAATTGGGCAGAA 58.052 29.630 19.90 0.00 36.81 3.02
6019 6437 8.319881 TCAAATTTATGATCAAAATTGGGCAGA 58.680 29.630 19.90 13.72 36.81 4.26
6020 6438 8.392612 GTCAAATTTATGATCAAAATTGGGCAG 58.607 33.333 19.39 12.52 36.81 4.85
6021 6439 8.102047 AGTCAAATTTATGATCAAAATTGGGCA 58.898 29.630 22.80 10.07 35.30 5.36
6022 6440 8.496707 AGTCAAATTTATGATCAAAATTGGGC 57.503 30.769 19.90 18.92 36.81 5.36
6099 6632 9.673454 AAAAATAGTATCGTTCAAACCTGTTTC 57.327 29.630 0.00 0.00 0.00 2.78
6148 6681 9.255304 TCAAACTTTGGCATTTGATTTAACTAC 57.745 29.630 9.96 0.00 39.34 2.73
6153 6686 5.994668 GGGTCAAACTTTGGCATTTGATTTA 59.005 36.000 15.49 0.00 44.36 1.40
6170 6703 5.297569 CCCTTTTGTATTTTGGGGTCAAA 57.702 39.130 0.00 0.00 40.71 2.69
6178 6711 9.325198 GGATTTATTAGCCCCTTTTGTATTTTG 57.675 33.333 0.00 0.00 0.00 2.44
6182 6715 7.591821 TCAGGATTTATTAGCCCCTTTTGTAT 58.408 34.615 0.00 0.00 0.00 2.29
6183 6716 6.975949 TCAGGATTTATTAGCCCCTTTTGTA 58.024 36.000 0.00 0.00 0.00 2.41
6184 6717 5.837829 TCAGGATTTATTAGCCCCTTTTGT 58.162 37.500 0.00 0.00 0.00 2.83
6185 6718 6.239402 CCATCAGGATTTATTAGCCCCTTTTG 60.239 42.308 0.00 0.00 36.89 2.44
6190 6723 4.593956 CTCCATCAGGATTTATTAGCCCC 58.406 47.826 0.00 0.00 44.70 5.80
6208 6741 4.228824 AGTACTTCTTTGTACCACCTCCA 58.771 43.478 0.00 0.00 42.58 3.86
6215 6748 3.119209 CGGAGGGAGTACTTCTTTGTACC 60.119 52.174 0.01 0.00 42.58 3.34
6230 6763 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
6233 6766 5.340439 AGGACTTGTATTTAGGAACGGAG 57.660 43.478 0.00 0.00 0.00 4.63
6234 6767 5.750352 AAGGACTTGTATTTAGGAACGGA 57.250 39.130 0.00 0.00 0.00 4.69
6236 6769 8.654215 GTCTAAAAGGACTTGTATTTAGGAACG 58.346 37.037 0.00 0.00 36.48 3.95
6237 6770 9.498176 TGTCTAAAAGGACTTGTATTTAGGAAC 57.502 33.333 0.00 0.00 36.48 3.62
6247 6780 9.981114 CCATTTAAAATGTCTAAAAGGACTTGT 57.019 29.630 0.00 0.00 37.16 3.16
6260 6793 9.485591 CGTATGTTGTAGTCCATTTAAAATGTC 57.514 33.333 0.00 0.00 0.00 3.06
6261 6794 8.455682 CCGTATGTTGTAGTCCATTTAAAATGT 58.544 33.333 0.00 0.00 0.00 2.71
6262 6795 8.670135 TCCGTATGTTGTAGTCCATTTAAAATG 58.330 33.333 0.00 0.00 0.00 2.32
6263 6796 8.795842 TCCGTATGTTGTAGTCCATTTAAAAT 57.204 30.769 0.00 0.00 0.00 1.82
6264 6797 8.670135 CATCCGTATGTTGTAGTCCATTTAAAA 58.330 33.333 0.00 0.00 0.00 1.52
6265 6798 7.201661 GCATCCGTATGTTGTAGTCCATTTAAA 60.202 37.037 0.00 0.00 35.38 1.52
6266 6799 6.259167 GCATCCGTATGTTGTAGTCCATTTAA 59.741 38.462 0.00 0.00 35.38 1.52
6267 6800 5.756347 GCATCCGTATGTTGTAGTCCATTTA 59.244 40.000 0.00 0.00 35.38 1.40
6268 6801 4.574828 GCATCCGTATGTTGTAGTCCATTT 59.425 41.667 0.00 0.00 35.38 2.32
6269 6802 4.127171 GCATCCGTATGTTGTAGTCCATT 58.873 43.478 0.00 0.00 35.38 3.16
6270 6803 3.133901 TGCATCCGTATGTTGTAGTCCAT 59.866 43.478 0.00 0.00 35.38 3.41
6271 6804 2.498078 TGCATCCGTATGTTGTAGTCCA 59.502 45.455 0.00 0.00 35.38 4.02
6272 6805 3.173668 TGCATCCGTATGTTGTAGTCC 57.826 47.619 0.00 0.00 35.38 3.85
6273 6806 4.119862 ACATGCATCCGTATGTTGTAGTC 58.880 43.478 0.00 0.00 44.98 2.59
6274 6807 4.137116 ACATGCATCCGTATGTTGTAGT 57.863 40.909 0.00 0.00 44.98 2.73
6275 6808 5.402568 GTCTACATGCATCCGTATGTTGTAG 59.597 44.000 18.50 18.50 44.98 2.74
6276 6809 5.163499 TGTCTACATGCATCCGTATGTTGTA 60.163 40.000 0.00 0.00 44.98 2.41
6277 6810 4.119862 GTCTACATGCATCCGTATGTTGT 58.880 43.478 0.00 0.00 44.98 3.32
6278 6811 4.119136 TGTCTACATGCATCCGTATGTTG 58.881 43.478 0.00 0.85 44.98 3.33
6279 6812 4.400529 TGTCTACATGCATCCGTATGTT 57.599 40.909 0.00 0.00 44.98 2.71
6281 6814 5.714047 AGTATGTCTACATGCATCCGTATG 58.286 41.667 12.71 0.00 40.71 2.39
6282 6815 5.984695 AGTATGTCTACATGCATCCGTAT 57.015 39.130 12.71 0.00 40.71 3.06
6283 6816 5.784578 AAGTATGTCTACATGCATCCGTA 57.215 39.130 12.71 0.00 40.71 4.02
6284 6817 4.672587 AAGTATGTCTACATGCATCCGT 57.327 40.909 12.71 0.00 40.71 4.69
6285 6818 6.447162 TCTAAAGTATGTCTACATGCATCCG 58.553 40.000 12.71 0.00 40.71 4.18
6286 6819 7.437748 ACTCTAAAGTATGTCTACATGCATCC 58.562 38.462 12.71 0.00 40.71 3.51
6305 6838 9.890629 AGCAAAATGAGTGAATGTATACTCTAA 57.109 29.630 4.17 0.00 42.86 2.10
6306 6839 9.534565 GAGCAAAATGAGTGAATGTATACTCTA 57.465 33.333 4.17 0.00 42.86 2.43
6307 6840 7.497249 GGAGCAAAATGAGTGAATGTATACTCT 59.503 37.037 4.17 0.00 42.86 3.24
6308 6841 7.517417 CGGAGCAAAATGAGTGAATGTATACTC 60.517 40.741 4.17 0.00 42.77 2.59
6309 6842 6.258727 CGGAGCAAAATGAGTGAATGTATACT 59.741 38.462 4.17 0.00 0.00 2.12
6310 6843 6.037172 ACGGAGCAAAATGAGTGAATGTATAC 59.963 38.462 0.00 0.00 0.00 1.47
6311 6844 6.112734 ACGGAGCAAAATGAGTGAATGTATA 58.887 36.000 0.00 0.00 0.00 1.47
6312 6845 4.943705 ACGGAGCAAAATGAGTGAATGTAT 59.056 37.500 0.00 0.00 0.00 2.29
6313 6846 4.323417 ACGGAGCAAAATGAGTGAATGTA 58.677 39.130 0.00 0.00 0.00 2.29
6314 6847 3.149196 ACGGAGCAAAATGAGTGAATGT 58.851 40.909 0.00 0.00 0.00 2.71
6315 6848 3.837213 ACGGAGCAAAATGAGTGAATG 57.163 42.857 0.00 0.00 0.00 2.67
6316 6849 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6317 6850 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6318 6851 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6319 6852 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6320 6853 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6321 6854 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
6322 6855 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
6323 6856 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6324 6857 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6325 6858 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6326 6859 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6327 6860 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6328 6861 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6329 6862 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6330 6863 4.082408 TCCAACAAGTGACTACATACGGAG 60.082 45.833 0.00 0.00 0.00 4.63
6331 6864 3.827876 TCCAACAAGTGACTACATACGGA 59.172 43.478 0.00 0.00 0.00 4.69
6332 6865 4.182693 TCCAACAAGTGACTACATACGG 57.817 45.455 0.00 0.00 0.00 4.02
6333 6866 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
6334 6867 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
6335 6868 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
6336 6869 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
6337 6870 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
6338 6871 8.603242 TTTTAGAGATTCCAACAAGTGACTAC 57.397 34.615 0.00 0.00 0.00 2.73
6339 6872 9.273016 CTTTTTAGAGATTCCAACAAGTGACTA 57.727 33.333 0.00 0.00 0.00 2.59
6340 6873 7.993183 TCTTTTTAGAGATTCCAACAAGTGACT 59.007 33.333 0.00 0.00 0.00 3.41
6341 6874 8.070769 GTCTTTTTAGAGATTCCAACAAGTGAC 58.929 37.037 0.00 0.00 0.00 3.67
6342 6875 7.993183 AGTCTTTTTAGAGATTCCAACAAGTGA 59.007 33.333 0.00 0.00 0.00 3.41
6343 6876 8.159344 AGTCTTTTTAGAGATTCCAACAAGTG 57.841 34.615 0.00 0.00 0.00 3.16
6344 6877 8.753497 AAGTCTTTTTAGAGATTCCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
6360 6893 9.025041 CCTCTGTTCCCAAATATAAGTCTTTTT 57.975 33.333 0.00 0.00 0.00 1.94
6361 6894 7.615757 CCCTCTGTTCCCAAATATAAGTCTTTT 59.384 37.037 0.00 0.00 0.00 2.27
6362 6895 7.036863 TCCCTCTGTTCCCAAATATAAGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
6363 6896 6.447084 TCCCTCTGTTCCCAAATATAAGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
6364 6897 5.970640 TCCCTCTGTTCCCAAATATAAGTCT 59.029 40.000 0.00 0.00 0.00 3.24
6365 6898 6.126739 ACTCCCTCTGTTCCCAAATATAAGTC 60.127 42.308 0.00 0.00 0.00 3.01
6366 6899 5.731678 ACTCCCTCTGTTCCCAAATATAAGT 59.268 40.000 0.00 0.00 0.00 2.24
6367 6900 6.253946 ACTCCCTCTGTTCCCAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
6368 6901 7.947782 ATACTCCCTCTGTTCCCAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
6369 6902 7.947782 AATACTCCCTCTGTTCCCAAATATA 57.052 36.000 0.00 0.00 0.00 0.86
6370 6903 6.848562 AATACTCCCTCTGTTCCCAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
6371 6904 6.423182 CAAATACTCCCTCTGTTCCCAAATA 58.577 40.000 0.00 0.00 0.00 1.40
6372 6905 5.264395 CAAATACTCCCTCTGTTCCCAAAT 58.736 41.667 0.00 0.00 0.00 2.32
6373 6906 4.508405 CCAAATACTCCCTCTGTTCCCAAA 60.508 45.833 0.00 0.00 0.00 3.28
6374 6907 3.010138 CCAAATACTCCCTCTGTTCCCAA 59.990 47.826 0.00 0.00 0.00 4.12
6375 6908 2.576191 CCAAATACTCCCTCTGTTCCCA 59.424 50.000 0.00 0.00 0.00 4.37
6376 6909 2.576648 ACCAAATACTCCCTCTGTTCCC 59.423 50.000 0.00 0.00 0.00 3.97
6377 6910 4.302559 AACCAAATACTCCCTCTGTTCC 57.697 45.455 0.00 0.00 0.00 3.62
6378 6911 6.371825 CACTTAACCAAATACTCCCTCTGTTC 59.628 42.308 0.00 0.00 0.00 3.18
6379 6912 6.238648 CACTTAACCAAATACTCCCTCTGTT 58.761 40.000 0.00 0.00 0.00 3.16
6380 6913 5.280521 CCACTTAACCAAATACTCCCTCTGT 60.281 44.000 0.00 0.00 0.00 3.41
6381 6914 5.186198 CCACTTAACCAAATACTCCCTCTG 58.814 45.833 0.00 0.00 0.00 3.35
6382 6915 4.850386 ACCACTTAACCAAATACTCCCTCT 59.150 41.667 0.00 0.00 0.00 3.69
6383 6916 5.175388 ACCACTTAACCAAATACTCCCTC 57.825 43.478 0.00 0.00 0.00 4.30
6384 6917 5.594199 AACCACTTAACCAAATACTCCCT 57.406 39.130 0.00 0.00 0.00 4.20
6385 6918 6.659745 AAAACCACTTAACCAAATACTCCC 57.340 37.500 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.