Multiple sequence alignment - TraesCS7D01G528000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G528000 chr7D 100.000 2366 0 0 1 2366 623341565 623343930 0.000000e+00 4370.0
1 TraesCS7D01G528000 chr7D 89.003 1073 83 17 519 1565 623393157 623394220 0.000000e+00 1295.0
2 TraesCS7D01G528000 chr7D 89.786 421 37 4 1943 2358 623394367 623394786 3.460000e-148 534.0
3 TraesCS7D01G528000 chr7D 87.958 191 23 0 1 191 309548547 309548357 2.370000e-55 226.0
4 TraesCS7D01G528000 chr7D 88.000 125 11 3 1558 1681 623394244 623394365 6.820000e-31 145.0
5 TraesCS7D01G528000 chr7D 89.720 107 10 1 328 433 612648017 612648123 4.100000e-28 135.0
6 TraesCS7D01G528000 chr7A 90.710 1141 51 19 435 1565 718311562 718310467 0.000000e+00 1469.0
7 TraesCS7D01G528000 chr7A 91.908 828 37 12 1558 2364 718287901 718287083 0.000000e+00 1131.0
8 TraesCS7D01G528000 chr7A 91.908 828 37 12 1558 2364 718296289 718295471 0.000000e+00 1131.0
9 TraesCS7D01G528000 chr7A 91.787 828 38 12 1558 2364 718292090 718291272 0.000000e+00 1125.0
10 TraesCS7D01G528000 chr7A 84.564 1205 103 28 535 1683 718204969 718203792 0.000000e+00 1118.0
11 TraesCS7D01G528000 chr7A 91.304 828 42 15 1558 2364 718294191 718293373 0.000000e+00 1103.0
12 TraesCS7D01G528000 chr7A 90.942 828 34 14 1558 2364 718285801 718284994 0.000000e+00 1075.0
13 TraesCS7D01G528000 chr7A 90.821 828 35 14 1558 2364 718289990 718289183 0.000000e+00 1070.0
14 TraesCS7D01G528000 chr7A 93.970 597 25 6 979 1565 718286420 718285825 0.000000e+00 893.0
15 TraesCS7D01G528000 chr7A 93.970 597 25 6 979 1565 718292709 718292114 0.000000e+00 893.0
16 TraesCS7D01G528000 chr7A 93.802 597 26 6 979 1565 718290609 718290014 0.000000e+00 887.0
17 TraesCS7D01G528000 chr7A 93.802 597 25 7 979 1565 718294809 718294215 0.000000e+00 887.0
18 TraesCS7D01G528000 chr7A 93.635 597 27 6 979 1565 718288520 718287925 0.000000e+00 881.0
19 TraesCS7D01G528000 chr7A 93.635 597 27 6 979 1565 718296908 718296313 0.000000e+00 881.0
20 TraesCS7D01G528000 chr7A 91.511 589 22 10 1796 2364 718298150 718297570 0.000000e+00 785.0
21 TraesCS7D01G528000 chr7A 87.413 429 37 8 1942 2364 718203793 718203376 5.920000e-131 477.0
22 TraesCS7D01G528000 chr7A 94.239 243 9 5 1558 1798 718310443 718310204 1.340000e-97 366.0
23 TraesCS7D01G528000 chr7A 89.855 276 25 3 1668 1943 321124151 321124423 3.740000e-93 351.0
24 TraesCS7D01G528000 chr7A 87.435 191 24 0 1 191 711529444 711529254 1.100000e-53 220.0
25 TraesCS7D01G528000 chr7B 88.889 648 60 8 928 1565 720792042 720791397 0.000000e+00 787.0
26 TraesCS7D01G528000 chr7B 89.744 390 34 4 1942 2326 720791245 720790857 5.870000e-136 494.0
27 TraesCS7D01G528000 chr7B 87.150 428 44 6 1942 2364 720705501 720705080 2.130000e-130 475.0
28 TraesCS7D01G528000 chr7B 86.651 427 47 6 1944 2364 720924992 720924570 4.610000e-127 464.0
29 TraesCS7D01G528000 chr7B 84.491 432 42 11 519 950 720792471 720792065 1.020000e-108 403.0
30 TraesCS7D01G528000 chr7B 88.976 127 13 1 1558 1683 720705626 720705500 3.150000e-34 156.0
31 TraesCS7D01G528000 chr4D 91.255 263 21 2 1682 1944 363683710 363683970 8.040000e-95 357.0
32 TraesCS7D01G528000 chr3A 86.911 191 25 0 1 191 575749787 575749597 5.120000e-52 215.0
33 TraesCS7D01G528000 chr3A 88.430 121 12 2 73 191 736938454 736938574 6.820000e-31 145.0
34 TraesCS7D01G528000 chr3A 84.270 89 11 2 1 86 736938188 736938276 1.510000e-12 84.2
35 TraesCS7D01G528000 chr5B 88.889 144 15 1 29 172 165773338 165773196 2.420000e-40 176.0
36 TraesCS7D01G528000 chr5B 88.889 144 15 1 29 172 166164674 166164532 2.420000e-40 176.0
37 TraesCS7D01G528000 chr2D 91.509 106 9 0 328 433 381205134 381205029 1.890000e-31 147.0
38 TraesCS7D01G528000 chrUn 90.566 106 10 0 328 433 33784769 33784874 8.820000e-30 141.0
39 TraesCS7D01G528000 chrUn 90.566 106 10 0 328 433 464018553 464018448 8.820000e-30 141.0
40 TraesCS7D01G528000 chr1D 90.000 110 9 2 328 436 232082959 232082851 8.820000e-30 141.0
41 TraesCS7D01G528000 chr4B 89.189 111 11 1 328 437 525300824 525300934 1.140000e-28 137.0
42 TraesCS7D01G528000 chr4B 88.288 111 12 1 328 437 525394136 525394026 5.310000e-27 132.0
43 TraesCS7D01G528000 chr2A 89.091 110 12 0 328 437 44431169 44431060 1.140000e-28 137.0
44 TraesCS7D01G528000 chr2A 88.182 110 13 0 328 437 725422691 725422582 5.310000e-27 132.0
45 TraesCS7D01G528000 chr5A 84.270 89 10 3 1 86 595905251 595905338 1.510000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G528000 chr7D 623341565 623343930 2365 False 4370.000000 4370 100.000000 1 2366 1 chr7D.!!$F2 2365
1 TraesCS7D01G528000 chr7D 623393157 623394786 1629 False 658.000000 1295 88.929667 519 2358 3 chr7D.!!$F3 1839
2 TraesCS7D01G528000 chr7A 718284994 718298150 13156 True 980.153846 1131 92.538077 979 2364 13 chr7A.!!$R3 1385
3 TraesCS7D01G528000 chr7A 718310204 718311562 1358 True 917.500000 1469 92.474500 435 1798 2 chr7A.!!$R4 1363
4 TraesCS7D01G528000 chr7A 718203376 718204969 1593 True 797.500000 1118 85.988500 535 2364 2 chr7A.!!$R2 1829
5 TraesCS7D01G528000 chr7B 720790857 720792471 1614 True 561.333333 787 87.708000 519 2326 3 chr7B.!!$R3 1807
6 TraesCS7D01G528000 chr7B 720705080 720705626 546 True 315.500000 475 88.063000 1558 2364 2 chr7B.!!$R2 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.033504 GGCACGTGAAGACAGAGGAA 59.966 55.000 22.23 0.0 0.0 3.36 F
270 271 1.000163 GCACGTGAAGACAGAGGAAGA 60.000 52.381 22.23 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 3453 1.594310 GCAGAGGAAGAAGCCGTCT 59.406 57.895 0.0 0.0 38.69 4.18 R
1716 10424 3.744238 TGATGTTTCACTTCAGTCGGA 57.256 42.857 0.0 0.0 30.18 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.267006 CCACGGCTCTGCTCACAT 59.733 61.111 0.00 0.00 0.00 3.21
18 19 1.812922 CCACGGCTCTGCTCACATC 60.813 63.158 0.00 0.00 0.00 3.06
19 20 1.812922 CACGGCTCTGCTCACATCC 60.813 63.158 0.00 0.00 0.00 3.51
20 21 2.584418 CGGCTCTGCTCACATCCG 60.584 66.667 0.00 0.00 0.00 4.18
21 22 2.894387 GGCTCTGCTCACATCCGC 60.894 66.667 0.00 0.00 0.00 5.54
22 23 3.260483 GCTCTGCTCACATCCGCG 61.260 66.667 0.00 0.00 0.00 6.46
24 25 1.433471 CTCTGCTCACATCCGCGTA 59.567 57.895 4.92 0.00 0.00 4.42
25 26 0.593518 CTCTGCTCACATCCGCGTAG 60.594 60.000 4.92 0.00 0.00 3.51
26 27 1.589993 CTGCTCACATCCGCGTAGG 60.590 63.158 4.92 0.00 42.97 3.18
31 32 1.880675 CTCACATCCGCGTAGGTCTAT 59.119 52.381 4.92 0.00 41.99 1.98
33 34 2.292569 TCACATCCGCGTAGGTCTATTC 59.707 50.000 4.92 0.00 41.99 1.75
34 35 1.612463 ACATCCGCGTAGGTCTATTCC 59.388 52.381 4.92 0.00 41.99 3.01
35 36 1.067776 CATCCGCGTAGGTCTATTCCC 60.068 57.143 4.92 0.00 41.99 3.97
36 37 0.825010 TCCGCGTAGGTCTATTCCCC 60.825 60.000 4.92 0.00 41.99 4.81
37 38 1.285023 CGCGTAGGTCTATTCCCCG 59.715 63.158 0.00 0.00 0.00 5.73
38 39 1.006454 GCGTAGGTCTATTCCCCGC 60.006 63.158 0.00 0.00 39.67 6.13
39 40 1.461911 GCGTAGGTCTATTCCCCGCT 61.462 60.000 9.13 0.00 41.69 5.52
41 42 1.269621 CGTAGGTCTATTCCCCGCTTG 60.270 57.143 0.00 0.00 0.00 4.01
42 43 1.070289 GTAGGTCTATTCCCCGCTTGG 59.930 57.143 0.00 0.00 0.00 3.61
43 44 0.326238 AGGTCTATTCCCCGCTTGGA 60.326 55.000 0.00 0.00 35.39 3.53
45 46 1.120530 GTCTATTCCCCGCTTGGAGA 58.879 55.000 0.00 0.00 35.37 3.71
46 47 1.485066 GTCTATTCCCCGCTTGGAGAA 59.515 52.381 0.00 0.00 35.37 2.87
47 48 1.762957 TCTATTCCCCGCTTGGAGAAG 59.237 52.381 0.00 0.00 35.37 2.85
48 49 1.762957 CTATTCCCCGCTTGGAGAAGA 59.237 52.381 0.00 0.00 35.37 2.87
49 50 0.991920 ATTCCCCGCTTGGAGAAGAA 59.008 50.000 0.00 0.00 35.37 2.52
50 51 0.324943 TTCCCCGCTTGGAGAAGAAG 59.675 55.000 0.00 0.00 35.37 2.85
51 52 1.746991 CCCCGCTTGGAGAAGAAGC 60.747 63.158 0.00 0.00 42.08 3.86
52 53 1.746991 CCCGCTTGGAGAAGAAGCC 60.747 63.158 0.00 0.00 42.45 4.35
53 54 1.003355 CCGCTTGGAGAAGAAGCCA 60.003 57.895 0.00 0.00 42.45 4.75
55 56 0.519077 CGCTTGGAGAAGAAGCCAAC 59.481 55.000 0.00 0.00 42.45 3.77
56 57 0.884514 GCTTGGAGAAGAAGCCAACC 59.115 55.000 0.00 0.00 40.03 3.77
58 59 2.157738 CTTGGAGAAGAAGCCAACCTG 58.842 52.381 0.00 0.00 39.14 4.00
59 60 0.401738 TGGAGAAGAAGCCAACCTGG 59.598 55.000 0.00 0.00 41.55 4.45
60 61 0.402121 GGAGAAGAAGCCAACCTGGT 59.598 55.000 0.00 0.00 40.46 4.00
61 62 1.628846 GGAGAAGAAGCCAACCTGGTA 59.371 52.381 0.00 0.00 40.46 3.25
62 63 2.615747 GGAGAAGAAGCCAACCTGGTAC 60.616 54.545 0.00 0.00 40.46 3.34
63 64 2.038557 GAGAAGAAGCCAACCTGGTACA 59.961 50.000 0.00 0.00 40.46 2.90
75 76 1.976898 TGGTACAGCCGTCCGAAAT 59.023 52.632 0.00 0.00 41.21 2.17
76 77 0.390603 TGGTACAGCCGTCCGAAATG 60.391 55.000 0.00 0.00 41.21 2.32
77 78 0.390735 GGTACAGCCGTCCGAAATGT 60.391 55.000 0.00 0.00 0.00 2.71
78 79 1.135024 GGTACAGCCGTCCGAAATGTA 60.135 52.381 0.00 0.00 0.00 2.29
79 80 2.190981 GTACAGCCGTCCGAAATGTAG 58.809 52.381 0.00 0.00 0.00 2.74
81 82 1.001633 ACAGCCGTCCGAAATGTAGTT 59.998 47.619 0.00 0.00 0.00 2.24
82 83 1.659098 CAGCCGTCCGAAATGTAGTTC 59.341 52.381 0.00 0.00 0.00 3.01
93 94 2.596904 ATGTAGTTCGAACCCCATCG 57.403 50.000 24.22 0.00 44.04 3.84
101 102 1.215655 CGAACCCCATCGAATCGAGC 61.216 60.000 12.00 0.00 45.48 5.03
102 103 1.215655 GAACCCCATCGAATCGAGCG 61.216 60.000 12.00 4.69 39.91 5.03
103 104 1.672854 AACCCCATCGAATCGAGCGA 61.673 55.000 12.00 14.31 39.91 4.93
104 105 1.661821 CCCCATCGAATCGAGCGAC 60.662 63.158 12.00 0.00 39.91 5.19
105 106 1.661821 CCCATCGAATCGAGCGACC 60.662 63.158 12.00 0.00 39.91 4.79
108 109 0.591488 CATCGAATCGAGCGACCGAA 60.591 55.000 12.00 7.01 42.22 4.30
109 110 0.099968 ATCGAATCGAGCGACCGAAA 59.900 50.000 12.00 3.10 42.22 3.46
111 112 0.294887 CGAATCGAGCGACCGAAAAG 59.705 55.000 0.00 0.00 42.22 2.27
113 114 1.584308 GAATCGAGCGACCGAAAAGAG 59.416 52.381 3.82 0.00 42.22 2.85
114 115 0.809385 ATCGAGCGACCGAAAAGAGA 59.191 50.000 3.82 0.00 42.22 3.10
115 116 0.109873 TCGAGCGACCGAAAAGAGAC 60.110 55.000 0.00 0.00 35.42 3.36
116 117 1.071567 CGAGCGACCGAAAAGAGACC 61.072 60.000 0.00 0.00 0.00 3.85
117 118 0.244178 GAGCGACCGAAAAGAGACCT 59.756 55.000 0.00 0.00 0.00 3.85
118 119 0.038159 AGCGACCGAAAAGAGACCTG 60.038 55.000 0.00 0.00 0.00 4.00
119 120 1.627550 GCGACCGAAAAGAGACCTGC 61.628 60.000 0.00 0.00 0.00 4.85
120 121 1.014564 CGACCGAAAAGAGACCTGCC 61.015 60.000 0.00 0.00 0.00 4.85
121 122 0.673956 GACCGAAAAGAGACCTGCCC 60.674 60.000 0.00 0.00 0.00 5.36
122 123 1.374947 CCGAAAAGAGACCTGCCCA 59.625 57.895 0.00 0.00 0.00 5.36
123 124 0.674895 CCGAAAAGAGACCTGCCCAG 60.675 60.000 0.00 0.00 0.00 4.45
147 148 7.787725 GGATTGTCCTGTAATTAACTCGATT 57.212 36.000 0.00 0.00 32.53 3.34
148 149 7.630924 GGATTGTCCTGTAATTAACTCGATTG 58.369 38.462 0.00 0.00 32.53 2.67
149 150 7.280205 GGATTGTCCTGTAATTAACTCGATTGT 59.720 37.037 0.00 0.00 32.53 2.71
152 153 9.661563 TTGTCCTGTAATTAACTCGATTGTAAT 57.338 29.630 0.00 0.00 0.00 1.89
153 154 9.309516 TGTCCTGTAATTAACTCGATTGTAATC 57.690 33.333 0.00 0.00 0.00 1.75
154 155 9.309516 GTCCTGTAATTAACTCGATTGTAATCA 57.690 33.333 5.55 0.00 35.11 2.57
159 160 9.586150 GTAATTAACTCGATTGTAATCATGCAG 57.414 33.333 5.55 0.00 35.11 4.41
160 161 8.437360 AATTAACTCGATTGTAATCATGCAGA 57.563 30.769 5.55 0.00 35.11 4.26
161 162 5.980698 AACTCGATTGTAATCATGCAGAG 57.019 39.130 5.55 5.51 35.11 3.35
162 163 4.375272 ACTCGATTGTAATCATGCAGAGG 58.625 43.478 5.55 0.00 35.11 3.69
164 165 4.625028 TCGATTGTAATCATGCAGAGGAG 58.375 43.478 5.55 0.00 35.11 3.69
166 167 4.447054 CGATTGTAATCATGCAGAGGAGTC 59.553 45.833 5.55 0.00 35.11 3.36
167 168 5.609423 GATTGTAATCATGCAGAGGAGTCT 58.391 41.667 0.00 0.00 35.49 3.24
168 169 4.662468 TGTAATCATGCAGAGGAGTCTC 57.338 45.455 0.00 0.00 40.25 3.36
169 170 6.462768 GATTGTAATCATGCAGAGGAGTCTCT 60.463 42.308 0.00 0.00 41.60 3.10
179 180 2.874849 GAGGAGTCTCTTCTTTCTGCG 58.125 52.381 4.75 0.00 37.07 5.18
180 181 2.230266 GAGGAGTCTCTTCTTTCTGCGT 59.770 50.000 4.75 0.00 37.07 5.24
182 183 3.070302 AGGAGTCTCTTCTTTCTGCGTTT 59.930 43.478 0.00 0.00 0.00 3.60
183 184 3.430556 GGAGTCTCTTCTTTCTGCGTTTC 59.569 47.826 0.00 0.00 0.00 2.78
184 185 4.303282 GAGTCTCTTCTTTCTGCGTTTCT 58.697 43.478 0.00 0.00 0.00 2.52
186 187 5.844004 AGTCTCTTCTTTCTGCGTTTCTTA 58.156 37.500 0.00 0.00 0.00 2.10
190 191 8.709646 GTCTCTTCTTTCTGCGTTTCTTATTTA 58.290 33.333 0.00 0.00 0.00 1.40
191 192 8.709646 TCTCTTCTTTCTGCGTTTCTTATTTAC 58.290 33.333 0.00 0.00 0.00 2.01
193 194 8.999431 TCTTCTTTCTGCGTTTCTTATTTACAT 58.001 29.630 0.00 0.00 0.00 2.29
195 196 7.453034 TCTTTCTGCGTTTCTTATTTACATCG 58.547 34.615 0.00 0.00 0.00 3.84
196 197 6.954616 TTCTGCGTTTCTTATTTACATCGA 57.045 33.333 0.00 0.00 0.00 3.59
197 198 6.954616 TCTGCGTTTCTTATTTACATCGAA 57.045 33.333 0.00 0.00 0.00 3.71
198 199 6.758149 TCTGCGTTTCTTATTTACATCGAAC 58.242 36.000 0.00 0.00 0.00 3.95
199 200 5.860641 TGCGTTTCTTATTTACATCGAACC 58.139 37.500 0.00 0.00 0.00 3.62
201 202 5.486706 CGTTTCTTATTTACATCGAACCCG 58.513 41.667 0.00 0.00 37.07 5.28
203 204 5.341872 TTCTTATTTACATCGAACCCGGA 57.658 39.130 0.73 0.00 36.24 5.14
204 205 4.685924 TCTTATTTACATCGAACCCGGAC 58.314 43.478 0.73 0.00 36.24 4.79
205 206 4.403432 TCTTATTTACATCGAACCCGGACT 59.597 41.667 0.73 0.00 36.24 3.85
206 207 3.622166 ATTTACATCGAACCCGGACTT 57.378 42.857 0.73 0.00 36.24 3.01
207 208 2.373540 TTACATCGAACCCGGACTTG 57.626 50.000 0.73 0.00 36.24 3.16
209 210 0.902531 ACATCGAACCCGGACTTGAT 59.097 50.000 0.73 0.75 36.24 2.57
210 211 1.278127 ACATCGAACCCGGACTTGATT 59.722 47.619 0.73 0.00 36.24 2.57
211 212 1.665679 CATCGAACCCGGACTTGATTG 59.334 52.381 0.73 0.00 36.24 2.67
212 213 0.036765 TCGAACCCGGACTTGATTGG 60.037 55.000 0.73 0.00 36.24 3.16
213 214 0.036765 CGAACCCGGACTTGATTGGA 60.037 55.000 0.73 0.00 0.00 3.53
214 215 1.739067 GAACCCGGACTTGATTGGAG 58.261 55.000 0.73 0.00 0.00 3.86
215 216 1.278127 GAACCCGGACTTGATTGGAGA 59.722 52.381 0.73 0.00 0.00 3.71
216 217 1.358152 ACCCGGACTTGATTGGAGAA 58.642 50.000 0.73 0.00 0.00 2.87
217 218 1.916181 ACCCGGACTTGATTGGAGAAT 59.084 47.619 0.73 0.00 0.00 2.40
218 219 2.092914 ACCCGGACTTGATTGGAGAATC 60.093 50.000 0.73 0.00 38.85 2.52
220 221 3.370953 CCCGGACTTGATTGGAGAATCTT 60.371 47.826 0.73 0.00 39.10 2.40
222 223 4.702131 CCGGACTTGATTGGAGAATCTTTT 59.298 41.667 0.00 0.00 39.10 2.27
246 247 4.853924 TTTTCTGTCAATCCTTCAAGGC 57.146 40.909 0.00 0.00 34.61 4.35
247 248 3.795688 TTCTGTCAATCCTTCAAGGCT 57.204 42.857 0.00 0.00 34.61 4.58
248 249 3.340814 TCTGTCAATCCTTCAAGGCTC 57.659 47.619 0.00 0.00 34.61 4.70
249 250 2.005451 CTGTCAATCCTTCAAGGCTCG 58.995 52.381 0.00 0.00 34.61 5.03
250 251 1.339055 TGTCAATCCTTCAAGGCTCGG 60.339 52.381 0.00 0.00 34.61 4.63
251 252 0.392998 TCAATCCTTCAAGGCTCGGC 60.393 55.000 0.00 0.00 34.61 5.54
252 253 0.677731 CAATCCTTCAAGGCTCGGCA 60.678 55.000 0.00 0.00 34.61 5.69
253 254 0.678048 AATCCTTCAAGGCTCGGCAC 60.678 55.000 0.00 0.00 34.61 5.01
254 255 2.859273 ATCCTTCAAGGCTCGGCACG 62.859 60.000 0.00 0.00 45.49 5.34
266 267 4.268687 GGCACGTGAAGACAGAGG 57.731 61.111 22.23 0.00 0.00 3.69
267 268 1.666011 GGCACGTGAAGACAGAGGA 59.334 57.895 22.23 0.00 0.00 3.71
268 269 0.033504 GGCACGTGAAGACAGAGGAA 59.966 55.000 22.23 0.00 0.00 3.36
269 270 1.423395 GCACGTGAAGACAGAGGAAG 58.577 55.000 22.23 0.00 0.00 3.46
270 271 1.000163 GCACGTGAAGACAGAGGAAGA 60.000 52.381 22.23 0.00 0.00 2.87
275 276 5.926542 CACGTGAAGACAGAGGAAGAAAATA 59.073 40.000 10.90 0.00 0.00 1.40
276 277 5.927115 ACGTGAAGACAGAGGAAGAAAATAC 59.073 40.000 0.00 0.00 0.00 1.89
277 278 5.926542 CGTGAAGACAGAGGAAGAAAATACA 59.073 40.000 0.00 0.00 0.00 2.29
278 279 6.128795 CGTGAAGACAGAGGAAGAAAATACAC 60.129 42.308 0.00 0.00 0.00 2.90
280 281 6.706270 TGAAGACAGAGGAAGAAAATACACAC 59.294 38.462 0.00 0.00 0.00 3.82
281 282 5.552178 AGACAGAGGAAGAAAATACACACC 58.448 41.667 0.00 0.00 0.00 4.16
282 283 4.315803 ACAGAGGAAGAAAATACACACCG 58.684 43.478 0.00 0.00 0.00 4.94
284 285 4.994852 CAGAGGAAGAAAATACACACCGAA 59.005 41.667 0.00 0.00 0.00 4.30
285 286 5.643777 CAGAGGAAGAAAATACACACCGAAT 59.356 40.000 0.00 0.00 0.00 3.34
286 287 5.875359 AGAGGAAGAAAATACACACCGAATC 59.125 40.000 0.00 0.00 0.00 2.52
288 289 4.390909 GGAAGAAAATACACACCGAATCGT 59.609 41.667 0.82 0.00 0.00 3.73
290 291 5.934935 AGAAAATACACACCGAATCGTTT 57.065 34.783 0.82 0.00 0.00 3.60
292 293 6.368213 AGAAAATACACACCGAATCGTTTTC 58.632 36.000 13.70 13.70 35.61 2.29
294 295 5.526010 AATACACACCGAATCGTTTTCTC 57.474 39.130 0.82 0.00 0.00 2.87
295 296 2.140717 ACACACCGAATCGTTTTCTCC 58.859 47.619 0.82 0.00 0.00 3.71
297 298 2.096417 CACACCGAATCGTTTTCTCCAC 60.096 50.000 0.82 0.00 0.00 4.02
298 299 2.224209 ACACCGAATCGTTTTCTCCACT 60.224 45.455 0.82 0.00 0.00 4.00
299 300 2.806244 CACCGAATCGTTTTCTCCACTT 59.194 45.455 0.82 0.00 0.00 3.16
300 301 3.250040 CACCGAATCGTTTTCTCCACTTT 59.750 43.478 0.82 0.00 0.00 2.66
301 302 3.497262 ACCGAATCGTTTTCTCCACTTTC 59.503 43.478 0.82 0.00 0.00 2.62
302 303 3.120304 CCGAATCGTTTTCTCCACTTTCC 60.120 47.826 0.82 0.00 0.00 3.13
303 304 3.496884 CGAATCGTTTTCTCCACTTTCCA 59.503 43.478 0.00 0.00 0.00 3.53
304 305 4.154195 CGAATCGTTTTCTCCACTTTCCAT 59.846 41.667 0.00 0.00 0.00 3.41
305 306 5.334879 CGAATCGTTTTCTCCACTTTCCATT 60.335 40.000 0.00 0.00 0.00 3.16
306 307 6.128391 CGAATCGTTTTCTCCACTTTCCATTA 60.128 38.462 0.00 0.00 0.00 1.90
307 308 7.414098 CGAATCGTTTTCTCCACTTTCCATTAT 60.414 37.037 0.00 0.00 0.00 1.28
308 309 7.703058 ATCGTTTTCTCCACTTTCCATTATT 57.297 32.000 0.00 0.00 0.00 1.40
309 310 8.801882 ATCGTTTTCTCCACTTTCCATTATTA 57.198 30.769 0.00 0.00 0.00 0.98
310 311 8.263940 TCGTTTTCTCCACTTTCCATTATTAG 57.736 34.615 0.00 0.00 0.00 1.73
311 312 7.881232 TCGTTTTCTCCACTTTCCATTATTAGT 59.119 33.333 0.00 0.00 0.00 2.24
314 315 9.681062 TTTTCTCCACTTTCCATTATTAGTAGG 57.319 33.333 0.00 0.00 0.00 3.18
315 316 7.374975 TCTCCACTTTCCATTATTAGTAGGG 57.625 40.000 0.00 0.00 0.00 3.53
316 317 6.329197 TCTCCACTTTCCATTATTAGTAGGGG 59.671 42.308 0.00 0.00 0.00 4.79
317 318 5.974370 TCCACTTTCCATTATTAGTAGGGGT 59.026 40.000 0.00 0.00 0.00 4.95
319 320 7.628505 TCCACTTTCCATTATTAGTAGGGGTAA 59.371 37.037 0.00 0.00 0.00 2.85
320 321 8.276477 CCACTTTCCATTATTAGTAGGGGTAAA 58.724 37.037 0.00 0.00 0.00 2.01
388 389 7.421530 AATCAACGGATATAAAAGGATGACG 57.578 36.000 0.00 0.00 32.09 4.35
389 390 5.294356 TCAACGGATATAAAAGGATGACGG 58.706 41.667 0.00 0.00 0.00 4.79
392 393 5.479306 ACGGATATAAAAGGATGACGGATG 58.521 41.667 0.00 0.00 0.00 3.51
395 396 6.311445 CGGATATAAAAGGATGACGGATGAAG 59.689 42.308 0.00 0.00 0.00 3.02
397 398 7.878127 GGATATAAAAGGATGACGGATGAAGAA 59.122 37.037 0.00 0.00 0.00 2.52
398 399 6.927294 ATAAAAGGATGACGGATGAAGAAC 57.073 37.500 0.00 0.00 0.00 3.01
400 401 5.677319 AAAGGATGACGGATGAAGAACTA 57.323 39.130 0.00 0.00 0.00 2.24
401 402 5.878406 AAGGATGACGGATGAAGAACTAT 57.122 39.130 0.00 0.00 0.00 2.12
402 403 5.207110 AGGATGACGGATGAAGAACTATG 57.793 43.478 0.00 0.00 0.00 2.23
404 405 5.363868 AGGATGACGGATGAAGAACTATGAA 59.636 40.000 0.00 0.00 0.00 2.57
406 407 6.201806 GGATGACGGATGAAGAACTATGAAAG 59.798 42.308 0.00 0.00 0.00 2.62
407 408 5.419542 TGACGGATGAAGAACTATGAAAGG 58.580 41.667 0.00 0.00 0.00 3.11
408 409 4.192317 ACGGATGAAGAACTATGAAAGGC 58.808 43.478 0.00 0.00 0.00 4.35
410 411 4.509600 CGGATGAAGAACTATGAAAGGCTC 59.490 45.833 0.00 0.00 0.00 4.70
411 412 4.819088 GGATGAAGAACTATGAAAGGCTCC 59.181 45.833 0.00 0.00 0.00 4.70
412 413 4.908601 TGAAGAACTATGAAAGGCTCCA 57.091 40.909 0.00 0.00 0.00 3.86
414 415 5.431765 TGAAGAACTATGAAAGGCTCCATC 58.568 41.667 5.74 0.00 0.00 3.51
415 416 4.429854 AGAACTATGAAAGGCTCCATCC 57.570 45.455 5.74 0.00 0.00 3.51
416 417 4.043596 AGAACTATGAAAGGCTCCATCCT 58.956 43.478 5.74 0.00 38.31 3.24
428 429 7.408013 AAGGCTCCATCCTTTAATATTAGGT 57.592 36.000 4.52 0.00 43.62 3.08
429 430 8.520119 AAGGCTCCATCCTTTAATATTAGGTA 57.480 34.615 4.52 0.00 43.62 3.08
430 431 8.520119 AGGCTCCATCCTTTAATATTAGGTAA 57.480 34.615 4.52 0.00 30.82 2.85
431 432 8.955794 AGGCTCCATCCTTTAATATTAGGTAAA 58.044 33.333 4.52 0.00 30.82 2.01
432 433 9.232473 GGCTCCATCCTTTAATATTAGGTAAAG 57.768 37.037 4.52 3.53 37.16 1.85
433 434 8.731605 GCTCCATCCTTTAATATTAGGTAAAGC 58.268 37.037 4.52 6.23 36.44 3.51
454 455 2.837291 GCCCAACACCACAGCCAA 60.837 61.111 0.00 0.00 0.00 4.52
456 457 1.455587 CCCAACACCACAGCCAAGT 60.456 57.895 0.00 0.00 0.00 3.16
459 460 1.238439 CAACACCACAGCCAAGTAGG 58.762 55.000 0.00 0.00 41.84 3.18
497 498 4.944962 TGCACGATAAATCTCCAACTTG 57.055 40.909 0.00 0.00 0.00 3.16
525 526 2.352388 TGGTGCTTAGATAAACACGGC 58.648 47.619 1.28 0.00 33.81 5.68
694 695 1.201965 GGCGAGTTGCTCATTTTCTCG 60.202 52.381 1.51 8.23 46.76 4.04
778 779 9.520515 AAATATAATCTGCAGGGGTTAATACTG 57.479 33.333 15.13 0.00 35.40 2.74
781 782 3.471354 GCAGGGGTTAATACTGCGT 57.529 52.632 11.50 0.00 46.65 5.24
786 787 2.833338 AGGGGTTAATACTGCGTGTGTA 59.167 45.455 0.00 0.00 0.00 2.90
1063 1328 1.685224 CTTGAGCTTACCCTGGCCA 59.315 57.895 4.71 4.71 0.00 5.36
1276 3640 0.935898 GCATGCTGCTACTGCTACTG 59.064 55.000 11.37 0.00 40.96 2.74
1282 3646 1.759445 CTGCTACTGCTACTGGGATGT 59.241 52.381 0.00 0.00 40.48 3.06
1376 5840 1.178276 CGGCTATAAGCGATCCCTCT 58.822 55.000 0.00 0.00 43.62 3.69
1415 5879 7.787725 ATACGAGGATTTGTGTTATTTCCTC 57.212 36.000 7.12 7.12 45.89 3.71
1432 5896 7.757242 ATTTCCTCCTAGGTAAGTCAGAATT 57.243 36.000 9.08 0.00 36.53 2.17
1508 5987 4.758165 GGTCACCCGTTTTCTTTCAATCTA 59.242 41.667 0.00 0.00 0.00 1.98
1509 5988 5.106673 GGTCACCCGTTTTCTTTCAATCTAG 60.107 44.000 0.00 0.00 0.00 2.43
1511 5990 6.017357 GTCACCCGTTTTCTTTCAATCTAGTT 60.017 38.462 0.00 0.00 0.00 2.24
1512 5991 6.017440 TCACCCGTTTTCTTTCAATCTAGTTG 60.017 38.462 0.00 0.00 39.25 3.16
1513 5992 6.017440 CACCCGTTTTCTTTCAATCTAGTTGA 60.017 38.462 4.31 4.31 44.87 3.18
1514 5993 6.715264 ACCCGTTTTCTTTCAATCTAGTTGAT 59.285 34.615 8.08 0.00 45.77 2.57
1515 5994 7.230712 ACCCGTTTTCTTTCAATCTAGTTGATT 59.769 33.333 8.08 0.00 45.77 2.57
1516 5995 8.082242 CCCGTTTTCTTTCAATCTAGTTGATTT 58.918 33.333 8.08 0.00 45.77 2.17
1641 6159 6.209986 TCACATTGCAGAAAAATCCAGATCTT 59.790 34.615 0.00 0.00 0.00 2.40
1643 6161 6.209986 ACATTGCAGAAAAATCCAGATCTTCA 59.790 34.615 0.00 0.00 0.00 3.02
1646 10353 5.182570 TGCAGAAAAATCCAGATCTTCACAG 59.817 40.000 0.00 0.00 0.00 3.66
1692 10400 4.187506 GGAGGTCTAATACTCCCTCTGT 57.812 50.000 0.00 0.00 46.01 3.41
1693 10401 4.548669 GGAGGTCTAATACTCCCTCTGTT 58.451 47.826 0.00 0.00 46.01 3.16
1694 10402 4.963628 GGAGGTCTAATACTCCCTCTGTTT 59.036 45.833 0.00 0.00 46.01 2.83
1695 10403 5.425862 GGAGGTCTAATACTCCCTCTGTTTT 59.574 44.000 0.00 0.00 46.01 2.43
1696 10404 6.070136 GGAGGTCTAATACTCCCTCTGTTTTT 60.070 42.308 0.00 0.00 46.01 1.94
1697 10405 7.125356 GGAGGTCTAATACTCCCTCTGTTTTTA 59.875 40.741 0.00 0.00 46.01 1.52
1698 10406 8.625467 AGGTCTAATACTCCCTCTGTTTTTAT 57.375 34.615 0.00 0.00 0.00 1.40
1699 10407 9.059023 AGGTCTAATACTCCCTCTGTTTTTATT 57.941 33.333 0.00 0.00 0.00 1.40
1700 10408 9.682465 GGTCTAATACTCCCTCTGTTTTTATTT 57.318 33.333 0.00 0.00 0.00 1.40
1706 10414 9.892130 ATACTCCCTCTGTTTTTATTTACTCTG 57.108 33.333 0.00 0.00 0.00 3.35
1707 10415 6.655425 ACTCCCTCTGTTTTTATTTACTCTGC 59.345 38.462 0.00 0.00 0.00 4.26
1708 10416 6.539173 TCCCTCTGTTTTTATTTACTCTGCA 58.461 36.000 0.00 0.00 0.00 4.41
1709 10417 7.175104 TCCCTCTGTTTTTATTTACTCTGCAT 58.825 34.615 0.00 0.00 0.00 3.96
1710 10418 8.325787 TCCCTCTGTTTTTATTTACTCTGCATA 58.674 33.333 0.00 0.00 0.00 3.14
1711 10419 9.125026 CCCTCTGTTTTTATTTACTCTGCATAT 57.875 33.333 0.00 0.00 0.00 1.78
1721 10429 9.856488 TTATTTACTCTGCATATTAGATCCGAC 57.144 33.333 0.00 0.00 0.00 4.79
1722 10430 7.526142 TTTACTCTGCATATTAGATCCGACT 57.474 36.000 0.00 0.00 0.00 4.18
1723 10431 5.384063 ACTCTGCATATTAGATCCGACTG 57.616 43.478 0.00 0.00 0.00 3.51
1724 10432 5.073428 ACTCTGCATATTAGATCCGACTGA 58.927 41.667 0.00 0.00 0.00 3.41
1725 10433 5.536538 ACTCTGCATATTAGATCCGACTGAA 59.463 40.000 0.00 0.00 0.00 3.02
1726 10434 6.018589 TCTGCATATTAGATCCGACTGAAG 57.981 41.667 0.00 0.00 0.00 3.02
1727 10435 5.536538 TCTGCATATTAGATCCGACTGAAGT 59.463 40.000 0.00 0.00 0.00 3.01
1728 10436 5.532557 TGCATATTAGATCCGACTGAAGTG 58.467 41.667 0.00 0.00 0.00 3.16
1729 10437 5.301805 TGCATATTAGATCCGACTGAAGTGA 59.698 40.000 0.00 0.00 0.00 3.41
1730 10438 6.183360 TGCATATTAGATCCGACTGAAGTGAA 60.183 38.462 0.00 0.00 0.00 3.18
1731 10439 6.701841 GCATATTAGATCCGACTGAAGTGAAA 59.298 38.462 0.00 0.00 0.00 2.69
1732 10440 7.306866 GCATATTAGATCCGACTGAAGTGAAAC 60.307 40.741 0.00 0.00 0.00 2.78
1733 10441 5.462530 TTAGATCCGACTGAAGTGAAACA 57.537 39.130 0.00 0.00 41.43 2.83
1734 10442 4.543590 AGATCCGACTGAAGTGAAACAT 57.456 40.909 0.00 0.00 41.43 2.71
1735 10443 4.499183 AGATCCGACTGAAGTGAAACATC 58.501 43.478 0.00 0.00 41.43 3.06
1736 10444 3.744238 TCCGACTGAAGTGAAACATCA 57.256 42.857 0.00 0.00 42.97 3.07
1737 10445 4.271696 TCCGACTGAAGTGAAACATCAT 57.728 40.909 0.00 0.00 44.26 2.45
1738 10446 5.400066 TCCGACTGAAGTGAAACATCATA 57.600 39.130 0.00 0.00 44.26 2.15
1739 10447 5.789521 TCCGACTGAAGTGAAACATCATAA 58.210 37.500 0.00 0.00 44.26 1.90
1740 10448 6.227522 TCCGACTGAAGTGAAACATCATAAA 58.772 36.000 0.00 0.00 44.26 1.40
1741 10449 6.368791 TCCGACTGAAGTGAAACATCATAAAG 59.631 38.462 0.00 0.00 44.26 1.85
1742 10450 6.147821 CCGACTGAAGTGAAACATCATAAAGT 59.852 38.462 0.00 0.00 44.26 2.66
1743 10451 7.307989 CCGACTGAAGTGAAACATCATAAAGTT 60.308 37.037 0.00 0.00 44.26 2.66
1744 10452 8.070171 CGACTGAAGTGAAACATCATAAAGTTT 58.930 33.333 0.00 0.00 44.26 2.66
1745 10453 9.173939 GACTGAAGTGAAACATCATAAAGTTTG 57.826 33.333 0.00 0.00 44.26 2.93
1746 10454 8.902806 ACTGAAGTGAAACATCATAAAGTTTGA 58.097 29.630 0.00 0.00 44.26 2.69
1747 10455 9.173939 CTGAAGTGAAACATCATAAAGTTTGAC 57.826 33.333 0.00 0.00 44.26 3.18
1748 10456 8.134895 TGAAGTGAAACATCATAAAGTTTGACC 58.865 33.333 0.00 0.00 39.96 4.02
1749 10457 7.581213 AGTGAAACATCATAAAGTTTGACCA 57.419 32.000 0.00 0.00 40.95 4.02
1750 10458 8.006298 AGTGAAACATCATAAAGTTTGACCAA 57.994 30.769 0.00 0.00 40.95 3.67
1751 10459 8.137437 AGTGAAACATCATAAAGTTTGACCAAG 58.863 33.333 0.00 0.00 40.95 3.61
1752 10460 7.920682 GTGAAACATCATAAAGTTTGACCAAGT 59.079 33.333 0.00 0.00 36.34 3.16
1753 10461 8.474025 TGAAACATCATAAAGTTTGACCAAGTT 58.526 29.630 0.00 0.00 38.01 2.66
1754 10462 9.313118 GAAACATCATAAAGTTTGACCAAGTTT 57.687 29.630 0.00 3.04 40.52 2.66
1808 10516 8.743085 AGCAAATCTATATGATGTGAAAGTGT 57.257 30.769 8.62 0.00 41.79 3.55
1809 10517 9.836864 AGCAAATCTATATGATGTGAAAGTGTA 57.163 29.630 8.62 0.00 41.79 2.90
1937 10645 6.657836 ATGTCGAGTAAATAAAAACGGAGG 57.342 37.500 0.00 0.00 0.00 4.30
1938 10646 4.931002 TGTCGAGTAAATAAAAACGGAGGG 59.069 41.667 0.00 0.00 0.00 4.30
1939 10647 5.170748 GTCGAGTAAATAAAAACGGAGGGA 58.829 41.667 0.00 0.00 0.00 4.20
1940 10648 5.290400 GTCGAGTAAATAAAAACGGAGGGAG 59.710 44.000 0.00 0.00 0.00 4.30
2136 13198 5.819825 AAAGCGAACTCTTGAGAAAGTTT 57.180 34.783 4.49 0.00 35.90 2.66
2170 13247 7.322664 ACATGAATGGCGTCAAAGAAAATTAT 58.677 30.769 0.00 0.00 0.00 1.28
2227 13308 5.187186 TCCTGTTCCATAAAGAGTAGTGTCC 59.813 44.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.812922 GATGTGAGCAGAGCCGTGG 60.813 63.158 0.00 0.00 0.00 4.94
1 2 1.812922 GGATGTGAGCAGAGCCGTG 60.813 63.158 0.00 0.00 0.00 4.94
3 4 2.584418 CGGATGTGAGCAGAGCCG 60.584 66.667 9.86 9.86 33.68 5.52
5 6 2.613739 TACGCGGATGTGAGCAGAGC 62.614 60.000 12.47 0.00 0.00 4.09
6 7 0.593518 CTACGCGGATGTGAGCAGAG 60.594 60.000 12.47 0.00 0.00 3.35
7 8 1.433471 CTACGCGGATGTGAGCAGA 59.567 57.895 12.47 0.00 0.00 4.26
8 9 1.589993 CCTACGCGGATGTGAGCAG 60.590 63.158 12.47 0.00 33.16 4.24
9 10 2.279502 GACCTACGCGGATGTGAGCA 62.280 60.000 12.47 0.00 36.31 4.26
11 12 1.306148 TAGACCTACGCGGATGTGAG 58.694 55.000 12.47 0.00 36.31 3.51
12 13 1.977056 ATAGACCTACGCGGATGTGA 58.023 50.000 12.47 0.00 36.31 3.58
13 14 2.607282 GGAATAGACCTACGCGGATGTG 60.607 54.545 12.47 0.00 36.31 3.21
15 16 1.067776 GGGAATAGACCTACGCGGATG 60.068 57.143 12.47 0.00 36.31 3.51
16 17 1.254954 GGGAATAGACCTACGCGGAT 58.745 55.000 12.47 0.00 36.31 4.18
17 18 0.825010 GGGGAATAGACCTACGCGGA 60.825 60.000 12.47 0.00 36.31 5.54
18 19 1.664306 GGGGAATAGACCTACGCGG 59.336 63.158 12.47 0.00 39.35 6.46
19 20 1.285023 CGGGGAATAGACCTACGCG 59.715 63.158 3.53 3.53 0.00 6.01
20 21 1.006454 GCGGGGAATAGACCTACGC 60.006 63.158 0.00 0.00 43.63 4.42
21 22 1.038280 AAGCGGGGAATAGACCTACG 58.962 55.000 0.00 0.00 35.04 3.51
22 23 1.070289 CCAAGCGGGGAATAGACCTAC 59.930 57.143 0.00 0.00 0.00 3.18
24 25 0.326238 TCCAAGCGGGGAATAGACCT 60.326 55.000 0.00 0.00 37.22 3.85
25 26 0.106894 CTCCAAGCGGGGAATAGACC 59.893 60.000 1.01 0.00 32.53 3.85
26 27 1.120530 TCTCCAAGCGGGGAATAGAC 58.879 55.000 1.01 0.00 39.60 2.59
33 34 1.746991 GCTTCTTCTCCAAGCGGGG 60.747 63.158 0.00 0.00 37.14 5.73
34 35 1.746991 GGCTTCTTCTCCAAGCGGG 60.747 63.158 0.00 0.00 46.21 6.13
35 36 0.606401 TTGGCTTCTTCTCCAAGCGG 60.606 55.000 0.00 0.00 46.21 5.52
36 37 0.519077 GTTGGCTTCTTCTCCAAGCG 59.481 55.000 0.00 0.00 46.21 4.68
38 39 2.157738 CAGGTTGGCTTCTTCTCCAAG 58.842 52.381 0.00 0.00 42.44 3.61
39 40 1.202927 CCAGGTTGGCTTCTTCTCCAA 60.203 52.381 0.00 0.00 39.81 3.53
41 42 0.402121 ACCAGGTTGGCTTCTTCTCC 59.598 55.000 0.00 0.00 42.67 3.71
42 43 2.038557 TGTACCAGGTTGGCTTCTTCTC 59.961 50.000 0.00 0.00 42.67 2.87
43 44 2.039084 CTGTACCAGGTTGGCTTCTTCT 59.961 50.000 0.00 0.00 42.67 2.85
45 46 1.545651 GCTGTACCAGGTTGGCTTCTT 60.546 52.381 0.00 0.00 42.67 2.52
46 47 0.036875 GCTGTACCAGGTTGGCTTCT 59.963 55.000 0.00 0.00 42.67 2.85
47 48 0.960861 GGCTGTACCAGGTTGGCTTC 60.961 60.000 0.00 0.00 42.67 3.86
48 49 1.074951 GGCTGTACCAGGTTGGCTT 59.925 57.895 0.00 0.00 42.67 4.35
49 50 2.757077 GGCTGTACCAGGTTGGCT 59.243 61.111 0.00 0.00 42.67 4.75
50 51 2.746277 CGGCTGTACCAGGTTGGC 60.746 66.667 0.00 0.00 42.67 4.52
51 52 1.375523 GACGGCTGTACCAGGTTGG 60.376 63.158 0.00 0.00 45.02 3.77
52 53 1.375523 GGACGGCTGTACCAGGTTG 60.376 63.158 0.00 0.00 39.03 3.77
53 54 2.939261 CGGACGGCTGTACCAGGTT 61.939 63.158 1.16 0.00 39.03 3.50
55 56 2.162338 TTTCGGACGGCTGTACCAGG 62.162 60.000 1.16 0.00 39.03 4.45
56 57 0.108329 ATTTCGGACGGCTGTACCAG 60.108 55.000 1.16 1.84 39.03 4.00
58 59 0.390735 ACATTTCGGACGGCTGTACC 60.391 55.000 1.16 3.23 0.00 3.34
59 60 2.190981 CTACATTTCGGACGGCTGTAC 58.809 52.381 0.00 0.00 0.00 2.90
60 61 1.820519 ACTACATTTCGGACGGCTGTA 59.179 47.619 0.00 0.00 0.00 2.74
61 62 0.606604 ACTACATTTCGGACGGCTGT 59.393 50.000 0.00 0.00 0.00 4.40
62 63 1.659098 GAACTACATTTCGGACGGCTG 59.341 52.381 0.00 0.00 0.00 4.85
63 64 1.734707 CGAACTACATTTCGGACGGCT 60.735 52.381 0.00 0.00 43.79 5.52
64 65 0.643820 CGAACTACATTTCGGACGGC 59.356 55.000 0.00 0.00 43.79 5.68
65 66 2.267188 TCGAACTACATTTCGGACGG 57.733 50.000 5.50 0.00 46.77 4.79
66 67 3.613145 GTTCGAACTACATTTCGGACG 57.387 47.619 20.97 0.00 45.15 4.79
68 69 2.354003 GGGGTTCGAACTACATTTCGGA 60.354 50.000 26.32 0.00 46.77 4.55
69 70 2.004733 GGGGTTCGAACTACATTTCGG 58.995 52.381 26.32 0.00 46.77 4.30
71 72 3.308866 CGATGGGGTTCGAACTACATTTC 59.691 47.826 26.81 19.44 41.62 2.17
73 74 2.498481 TCGATGGGGTTCGAACTACATT 59.502 45.455 26.81 16.83 44.56 2.71
75 76 1.548081 TCGATGGGGTTCGAACTACA 58.452 50.000 26.32 23.53 44.56 2.74
81 82 0.384309 CTCGATTCGATGGGGTTCGA 59.616 55.000 9.54 0.00 45.75 3.71
82 83 1.215655 GCTCGATTCGATGGGGTTCG 61.216 60.000 9.54 0.00 40.46 3.95
83 84 1.215655 CGCTCGATTCGATGGGGTTC 61.216 60.000 9.54 0.00 34.61 3.62
84 85 1.227263 CGCTCGATTCGATGGGGTT 60.227 57.895 9.54 0.00 34.61 4.11
86 87 1.661821 GTCGCTCGATTCGATGGGG 60.662 63.158 9.54 7.55 38.29 4.96
87 88 1.661821 GGTCGCTCGATTCGATGGG 60.662 63.158 9.54 11.63 38.29 4.00
88 89 2.011349 CGGTCGCTCGATTCGATGG 61.011 63.158 9.54 4.80 38.29 3.51
89 90 0.591488 TTCGGTCGCTCGATTCGATG 60.591 55.000 9.54 5.72 39.03 3.84
90 91 0.099968 TTTCGGTCGCTCGATTCGAT 59.900 50.000 9.54 0.00 39.03 3.59
91 92 0.109643 TTTTCGGTCGCTCGATTCGA 60.110 50.000 8.70 8.70 39.03 3.71
93 94 1.584308 CTCTTTTCGGTCGCTCGATTC 59.416 52.381 0.00 0.00 39.03 2.52
96 97 0.109873 GTCTCTTTTCGGTCGCTCGA 60.110 55.000 0.00 0.00 37.38 4.04
97 98 1.071567 GGTCTCTTTTCGGTCGCTCG 61.072 60.000 0.00 0.00 0.00 5.03
98 99 0.244178 AGGTCTCTTTTCGGTCGCTC 59.756 55.000 0.00 0.00 0.00 5.03
99 100 0.038159 CAGGTCTCTTTTCGGTCGCT 60.038 55.000 0.00 0.00 0.00 4.93
101 102 1.014564 GGCAGGTCTCTTTTCGGTCG 61.015 60.000 0.00 0.00 0.00 4.79
102 103 0.673956 GGGCAGGTCTCTTTTCGGTC 60.674 60.000 0.00 0.00 0.00 4.79
103 104 1.375326 GGGCAGGTCTCTTTTCGGT 59.625 57.895 0.00 0.00 0.00 4.69
104 105 0.674895 CTGGGCAGGTCTCTTTTCGG 60.675 60.000 0.00 0.00 0.00 4.30
105 106 0.674895 CCTGGGCAGGTCTCTTTTCG 60.675 60.000 0.00 0.00 43.61 3.46
123 124 7.280205 ACAATCGAGTTAATTACAGGACAATCC 59.720 37.037 0.00 0.00 36.58 3.01
126 127 9.661563 ATTACAATCGAGTTAATTACAGGACAA 57.338 29.630 0.00 0.00 0.00 3.18
128 129 9.309516 TGATTACAATCGAGTTAATTACAGGAC 57.690 33.333 0.00 0.00 38.26 3.85
131 132 9.586150 GCATGATTACAATCGAGTTAATTACAG 57.414 33.333 0.00 0.00 38.26 2.74
132 133 9.103861 TGCATGATTACAATCGAGTTAATTACA 57.896 29.630 0.00 0.00 38.26 2.41
133 134 9.586150 CTGCATGATTACAATCGAGTTAATTAC 57.414 33.333 0.00 0.00 38.26 1.89
134 135 9.541143 TCTGCATGATTACAATCGAGTTAATTA 57.459 29.630 0.00 0.00 38.26 1.40
137 138 6.479990 CCTCTGCATGATTACAATCGAGTTAA 59.520 38.462 0.00 0.00 38.26 2.01
138 139 5.985530 CCTCTGCATGATTACAATCGAGTTA 59.014 40.000 0.00 0.00 38.26 2.24
139 140 4.813161 CCTCTGCATGATTACAATCGAGTT 59.187 41.667 0.00 0.00 38.26 3.01
141 142 4.625028 TCCTCTGCATGATTACAATCGAG 58.375 43.478 0.00 0.00 38.26 4.04
142 143 4.100035 ACTCCTCTGCATGATTACAATCGA 59.900 41.667 0.00 0.00 38.26 3.59
143 144 4.375272 ACTCCTCTGCATGATTACAATCG 58.625 43.478 0.00 0.00 38.26 3.34
144 145 5.609423 AGACTCCTCTGCATGATTACAATC 58.391 41.667 0.00 0.00 35.97 2.67
145 146 5.609423 GAGACTCCTCTGCATGATTACAAT 58.391 41.667 0.00 0.00 36.50 2.71
147 148 4.662468 GAGACTCCTCTGCATGATTACA 57.338 45.455 0.00 0.00 36.50 2.41
159 160 2.230266 ACGCAGAAAGAAGAGACTCCTC 59.770 50.000 0.00 0.00 39.72 3.71
160 161 2.243810 ACGCAGAAAGAAGAGACTCCT 58.756 47.619 0.00 0.00 0.00 3.69
161 162 2.734276 ACGCAGAAAGAAGAGACTCC 57.266 50.000 0.00 0.00 0.00 3.85
162 163 4.303282 AGAAACGCAGAAAGAAGAGACTC 58.697 43.478 0.00 0.00 0.00 3.36
164 165 6.713792 ATAAGAAACGCAGAAAGAAGAGAC 57.286 37.500 0.00 0.00 0.00 3.36
166 167 8.495949 TGTAAATAAGAAACGCAGAAAGAAGAG 58.504 33.333 0.00 0.00 0.00 2.85
167 168 8.373048 TGTAAATAAGAAACGCAGAAAGAAGA 57.627 30.769 0.00 0.00 0.00 2.87
168 169 9.267096 GATGTAAATAAGAAACGCAGAAAGAAG 57.733 33.333 0.00 0.00 0.00 2.85
169 170 7.955324 CGATGTAAATAAGAAACGCAGAAAGAA 59.045 33.333 0.00 0.00 0.00 2.52
171 172 7.453034 TCGATGTAAATAAGAAACGCAGAAAG 58.547 34.615 0.00 0.00 0.00 2.62
173 174 6.954616 TCGATGTAAATAAGAAACGCAGAA 57.045 33.333 0.00 0.00 0.00 3.02
174 175 6.183360 GGTTCGATGTAAATAAGAAACGCAGA 60.183 38.462 0.00 0.00 0.00 4.26
177 178 5.260900 GGGTTCGATGTAAATAAGAAACGC 58.739 41.667 0.00 0.00 29.93 4.84
178 179 5.486706 CGGGTTCGATGTAAATAAGAAACG 58.513 41.667 0.00 0.00 39.00 3.60
179 180 5.581874 TCCGGGTTCGATGTAAATAAGAAAC 59.418 40.000 0.00 0.00 39.00 2.78
180 181 5.581874 GTCCGGGTTCGATGTAAATAAGAAA 59.418 40.000 0.00 0.00 39.00 2.52
182 183 4.403432 AGTCCGGGTTCGATGTAAATAAGA 59.597 41.667 0.00 0.00 39.00 2.10
183 184 4.690122 AGTCCGGGTTCGATGTAAATAAG 58.310 43.478 0.00 0.00 39.00 1.73
184 185 4.741321 AGTCCGGGTTCGATGTAAATAA 57.259 40.909 0.00 0.00 39.00 1.40
186 187 3.055675 TCAAGTCCGGGTTCGATGTAAAT 60.056 43.478 0.00 0.00 39.00 1.40
190 191 0.902531 ATCAAGTCCGGGTTCGATGT 59.097 50.000 0.00 0.00 39.00 3.06
191 192 1.665679 CAATCAAGTCCGGGTTCGATG 59.334 52.381 0.00 0.00 39.00 3.84
193 194 0.036765 CCAATCAAGTCCGGGTTCGA 60.037 55.000 0.00 0.00 39.00 3.71
195 196 1.278127 TCTCCAATCAAGTCCGGGTTC 59.722 52.381 0.00 0.00 0.00 3.62
196 197 1.358152 TCTCCAATCAAGTCCGGGTT 58.642 50.000 0.00 0.00 0.00 4.11
197 198 1.358152 TTCTCCAATCAAGTCCGGGT 58.642 50.000 0.00 0.00 0.00 5.28
198 199 2.171448 AGATTCTCCAATCAAGTCCGGG 59.829 50.000 0.00 0.00 41.03 5.73
199 200 3.550437 AGATTCTCCAATCAAGTCCGG 57.450 47.619 0.00 0.00 41.03 5.14
224 225 4.895297 AGCCTTGAAGGATTGACAGAAAAA 59.105 37.500 16.93 0.00 37.67 1.94
225 226 4.473444 AGCCTTGAAGGATTGACAGAAAA 58.527 39.130 16.93 0.00 37.67 2.29
226 227 4.074970 GAGCCTTGAAGGATTGACAGAAA 58.925 43.478 16.93 0.00 37.67 2.52
227 228 3.679389 GAGCCTTGAAGGATTGACAGAA 58.321 45.455 16.93 0.00 37.67 3.02
228 229 2.354103 CGAGCCTTGAAGGATTGACAGA 60.354 50.000 16.93 0.00 37.35 3.41
231 232 1.373570 CCGAGCCTTGAAGGATTGAC 58.626 55.000 18.02 0.00 37.35 3.18
232 233 0.392998 GCCGAGCCTTGAAGGATTGA 60.393 55.000 18.02 0.00 37.35 2.57
233 234 0.677731 TGCCGAGCCTTGAAGGATTG 60.678 55.000 16.93 13.09 37.67 2.67
234 235 0.678048 GTGCCGAGCCTTGAAGGATT 60.678 55.000 16.93 1.31 37.67 3.01
238 239 2.357517 ACGTGCCGAGCCTTGAAG 60.358 61.111 1.50 0.00 0.00 3.02
240 241 3.158537 TTCACGTGCCGAGCCTTGA 62.159 57.895 11.67 0.00 0.00 3.02
241 242 2.664851 TTCACGTGCCGAGCCTTG 60.665 61.111 11.67 0.00 0.00 3.61
242 243 2.357517 CTTCACGTGCCGAGCCTT 60.358 61.111 11.67 0.00 0.00 4.35
243 244 3.303135 TCTTCACGTGCCGAGCCT 61.303 61.111 11.67 0.00 0.00 4.58
244 245 3.112709 GTCTTCACGTGCCGAGCC 61.113 66.667 11.67 0.00 0.00 4.70
245 246 2.355837 TGTCTTCACGTGCCGAGC 60.356 61.111 11.67 5.93 0.00 5.03
246 247 0.730834 CTCTGTCTTCACGTGCCGAG 60.731 60.000 11.67 8.78 0.00 4.63
247 248 1.285950 CTCTGTCTTCACGTGCCGA 59.714 57.895 11.67 6.60 0.00 5.54
248 249 1.734477 CCTCTGTCTTCACGTGCCG 60.734 63.158 11.67 3.99 0.00 5.69
249 250 0.033504 TTCCTCTGTCTTCACGTGCC 59.966 55.000 11.67 0.00 0.00 5.01
250 251 1.000163 TCTTCCTCTGTCTTCACGTGC 60.000 52.381 11.67 0.00 0.00 5.34
251 252 3.371102 TTCTTCCTCTGTCTTCACGTG 57.629 47.619 9.94 9.94 0.00 4.49
252 253 4.402056 TTTTCTTCCTCTGTCTTCACGT 57.598 40.909 0.00 0.00 0.00 4.49
253 254 5.926542 TGTATTTTCTTCCTCTGTCTTCACG 59.073 40.000 0.00 0.00 0.00 4.35
254 255 6.706270 TGTGTATTTTCTTCCTCTGTCTTCAC 59.294 38.462 0.00 0.00 0.00 3.18
257 258 5.998363 GGTGTGTATTTTCTTCCTCTGTCTT 59.002 40.000 0.00 0.00 0.00 3.01
260 261 4.039973 TCGGTGTGTATTTTCTTCCTCTGT 59.960 41.667 0.00 0.00 0.00 3.41
262 263 4.884668 TCGGTGTGTATTTTCTTCCTCT 57.115 40.909 0.00 0.00 0.00 3.69
263 264 5.220416 CGATTCGGTGTGTATTTTCTTCCTC 60.220 44.000 0.00 0.00 0.00 3.71
264 265 4.630069 CGATTCGGTGTGTATTTTCTTCCT 59.370 41.667 0.00 0.00 0.00 3.36
265 266 4.390909 ACGATTCGGTGTGTATTTTCTTCC 59.609 41.667 11.29 0.00 0.00 3.46
266 267 5.526010 ACGATTCGGTGTGTATTTTCTTC 57.474 39.130 11.29 0.00 0.00 2.87
267 268 5.934935 AACGATTCGGTGTGTATTTTCTT 57.065 34.783 11.29 0.00 0.00 2.52
268 269 5.934935 AAACGATTCGGTGTGTATTTTCT 57.065 34.783 11.29 0.00 0.00 2.52
269 270 6.368213 AGAAAACGATTCGGTGTGTATTTTC 58.632 36.000 11.29 13.86 35.85 2.29
270 271 6.308371 AGAAAACGATTCGGTGTGTATTTT 57.692 33.333 11.29 6.07 0.00 1.82
275 276 2.140717 GGAGAAAACGATTCGGTGTGT 58.859 47.619 11.29 0.00 0.00 3.72
276 277 2.096417 GTGGAGAAAACGATTCGGTGTG 60.096 50.000 11.29 0.00 0.00 3.82
277 278 2.140717 GTGGAGAAAACGATTCGGTGT 58.859 47.619 11.29 0.00 0.00 4.16
278 279 2.413837 AGTGGAGAAAACGATTCGGTG 58.586 47.619 11.29 0.00 0.00 4.94
280 281 3.120304 GGAAAGTGGAGAAAACGATTCGG 60.120 47.826 11.29 0.00 0.00 4.30
281 282 3.496884 TGGAAAGTGGAGAAAACGATTCG 59.503 43.478 4.14 4.14 0.00 3.34
282 283 5.629079 ATGGAAAGTGGAGAAAACGATTC 57.371 39.130 0.00 0.00 0.00 2.52
284 285 7.703058 AATAATGGAAAGTGGAGAAAACGAT 57.297 32.000 0.00 0.00 0.00 3.73
285 286 7.881232 ACTAATAATGGAAAGTGGAGAAAACGA 59.119 33.333 0.00 0.00 0.00 3.85
286 287 8.040716 ACTAATAATGGAAAGTGGAGAAAACG 57.959 34.615 0.00 0.00 0.00 3.60
288 289 9.681062 CCTACTAATAATGGAAAGTGGAGAAAA 57.319 33.333 0.00 0.00 0.00 2.29
290 291 7.147373 CCCCTACTAATAATGGAAAGTGGAGAA 60.147 40.741 0.00 0.00 0.00 2.87
292 293 6.101296 ACCCCTACTAATAATGGAAAGTGGAG 59.899 42.308 0.00 0.00 0.00 3.86
294 295 6.262056 ACCCCTACTAATAATGGAAAGTGG 57.738 41.667 0.00 0.00 0.00 4.00
295 296 9.689501 TTTTACCCCTACTAATAATGGAAAGTG 57.310 33.333 0.00 0.00 0.00 3.16
362 363 8.342634 CGTCATCCTTTTATATCCGTTGATTTT 58.657 33.333 0.00 0.00 32.18 1.82
363 364 7.041372 CCGTCATCCTTTTATATCCGTTGATTT 60.041 37.037 0.00 0.00 32.18 2.17
364 365 6.426937 CCGTCATCCTTTTATATCCGTTGATT 59.573 38.462 0.00 0.00 32.18 2.57
365 366 5.932303 CCGTCATCCTTTTATATCCGTTGAT 59.068 40.000 0.00 0.00 34.87 2.57
366 367 5.069383 TCCGTCATCCTTTTATATCCGTTGA 59.931 40.000 0.00 0.00 0.00 3.18
367 368 5.294356 TCCGTCATCCTTTTATATCCGTTG 58.706 41.667 0.00 0.00 0.00 4.10
368 369 5.540400 TCCGTCATCCTTTTATATCCGTT 57.460 39.130 0.00 0.00 0.00 4.44
369 370 5.245301 TCATCCGTCATCCTTTTATATCCGT 59.755 40.000 0.00 0.00 0.00 4.69
371 372 7.386851 TCTTCATCCGTCATCCTTTTATATCC 58.613 38.462 0.00 0.00 0.00 2.59
372 373 8.713271 GTTCTTCATCCGTCATCCTTTTATATC 58.287 37.037 0.00 0.00 0.00 1.63
373 374 8.432805 AGTTCTTCATCCGTCATCCTTTTATAT 58.567 33.333 0.00 0.00 0.00 0.86
374 375 7.792032 AGTTCTTCATCCGTCATCCTTTTATA 58.208 34.615 0.00 0.00 0.00 0.98
377 378 4.911390 AGTTCTTCATCCGTCATCCTTTT 58.089 39.130 0.00 0.00 0.00 2.27
378 379 4.559862 AGTTCTTCATCCGTCATCCTTT 57.440 40.909 0.00 0.00 0.00 3.11
379 380 5.363868 TCATAGTTCTTCATCCGTCATCCTT 59.636 40.000 0.00 0.00 0.00 3.36
380 381 4.895889 TCATAGTTCTTCATCCGTCATCCT 59.104 41.667 0.00 0.00 0.00 3.24
381 382 5.201713 TCATAGTTCTTCATCCGTCATCC 57.798 43.478 0.00 0.00 0.00 3.51
382 383 6.201806 CCTTTCATAGTTCTTCATCCGTCATC 59.798 42.308 0.00 0.00 0.00 2.92
384 385 5.419542 CCTTTCATAGTTCTTCATCCGTCA 58.580 41.667 0.00 0.00 0.00 4.35
385 386 4.271291 GCCTTTCATAGTTCTTCATCCGTC 59.729 45.833 0.00 0.00 0.00 4.79
386 387 4.080863 AGCCTTTCATAGTTCTTCATCCGT 60.081 41.667 0.00 0.00 0.00 4.69
387 388 4.446371 AGCCTTTCATAGTTCTTCATCCG 58.554 43.478 0.00 0.00 0.00 4.18
388 389 4.819088 GGAGCCTTTCATAGTTCTTCATCC 59.181 45.833 0.00 0.00 0.00 3.51
389 390 5.431765 TGGAGCCTTTCATAGTTCTTCATC 58.568 41.667 0.00 0.00 0.00 2.92
392 393 4.819088 GGATGGAGCCTTTCATAGTTCTTC 59.181 45.833 0.00 0.00 0.00 2.87
395 396 4.429854 AGGATGGAGCCTTTCATAGTTC 57.570 45.455 0.00 0.00 33.46 3.01
406 407 9.232473 CTTTACCTAATATTAAAGGATGGAGCC 57.768 37.037 10.68 0.00 36.66 4.70
407 408 8.731605 GCTTTACCTAATATTAAAGGATGGAGC 58.268 37.037 10.68 9.68 36.29 4.70
414 415 9.011095 GGGCTTAGCTTTACCTAATATTAAAGG 57.989 37.037 3.59 6.64 36.29 3.11
415 416 9.569122 TGGGCTTAGCTTTACCTAATATTAAAG 57.431 33.333 3.59 0.91 38.04 1.85
416 417 9.924010 TTGGGCTTAGCTTTACCTAATATTAAA 57.076 29.630 3.59 0.00 0.00 1.52
419 420 7.284716 GTGTTGGGCTTAGCTTTACCTAATATT 59.715 37.037 3.59 0.00 0.00 1.28
420 421 6.771267 GTGTTGGGCTTAGCTTTACCTAATAT 59.229 38.462 3.59 0.00 0.00 1.28
422 423 4.948004 GTGTTGGGCTTAGCTTTACCTAAT 59.052 41.667 3.59 0.00 0.00 1.73
423 424 4.329392 GTGTTGGGCTTAGCTTTACCTAA 58.671 43.478 3.59 0.00 0.00 2.69
424 425 3.307904 GGTGTTGGGCTTAGCTTTACCTA 60.308 47.826 3.59 0.00 0.00 3.08
426 427 1.816835 GGTGTTGGGCTTAGCTTTACC 59.183 52.381 3.59 2.86 0.00 2.85
427 428 2.228103 GTGGTGTTGGGCTTAGCTTTAC 59.772 50.000 3.59 0.39 0.00 2.01
428 429 2.158593 TGTGGTGTTGGGCTTAGCTTTA 60.159 45.455 3.59 0.00 0.00 1.85
429 430 1.328279 GTGGTGTTGGGCTTAGCTTT 58.672 50.000 3.59 0.00 0.00 3.51
430 431 0.184933 TGTGGTGTTGGGCTTAGCTT 59.815 50.000 3.59 0.00 0.00 3.74
431 432 0.250901 CTGTGGTGTTGGGCTTAGCT 60.251 55.000 3.59 0.00 0.00 3.32
432 433 1.866853 GCTGTGGTGTTGGGCTTAGC 61.867 60.000 0.00 0.00 0.00 3.09
433 434 1.244019 GGCTGTGGTGTTGGGCTTAG 61.244 60.000 0.00 0.00 0.00 2.18
437 438 2.837291 TTGGCTGTGGTGTTGGGC 60.837 61.111 0.00 0.00 0.00 5.36
454 455 5.279859 GCAAGTAAACCCAACTACTCCTACT 60.280 44.000 0.00 0.00 0.00 2.57
456 457 4.594062 TGCAAGTAAACCCAACTACTCCTA 59.406 41.667 0.00 0.00 0.00 2.94
459 460 3.185797 CGTGCAAGTAAACCCAACTACTC 59.814 47.826 0.00 0.00 0.00 2.59
497 498 7.850982 CGTGTTTATCTAAGCACCATTTATGAC 59.149 37.037 10.20 0.00 42.19 3.06
525 526 8.482852 AGATTCCAATGAAATTACTTATGGGG 57.517 34.615 0.00 0.00 32.46 4.96
555 556 3.120683 TGCTCGAAACAAAGTAATCGCTG 60.121 43.478 0.00 0.00 35.39 5.18
599 600 8.153221 TGTAACAAAGGGAATTCATAGGAGTA 57.847 34.615 7.93 0.00 0.00 2.59
659 660 0.899720 TCGCCAGGTTACTTGGGTAG 59.100 55.000 15.30 0.00 0.00 3.18
694 695 1.676529 TGTCGAGATTCCATCGGTCTC 59.323 52.381 0.00 0.00 40.54 3.36
778 779 3.367025 CCTAGCTAGTTTTGTACACACGC 59.633 47.826 19.31 0.00 0.00 5.34
780 781 3.683340 GCCCTAGCTAGTTTTGTACACAC 59.317 47.826 19.31 0.00 35.50 3.82
781 782 3.307199 GGCCCTAGCTAGTTTTGTACACA 60.307 47.826 19.31 0.00 39.73 3.72
786 787 2.266279 TGAGGCCCTAGCTAGTTTTGT 58.734 47.619 19.31 0.05 39.73 2.83
813 816 3.275088 CGTGAGGTGCGGTCTAGT 58.725 61.111 0.00 0.00 0.00 2.57
1029 1294 0.175302 CAAGGCTGAGCTCATCGTCT 59.825 55.000 18.63 10.81 0.00 4.18
1084 3448 2.035442 GGAAGAAGCCGTCTGGTGC 61.035 63.158 0.00 0.00 36.40 5.01
1089 3453 1.594310 GCAGAGGAAGAAGCCGTCT 59.406 57.895 0.00 0.00 38.69 4.18
1276 3640 3.746949 CTGCAGGCTCGGACATCCC 62.747 68.421 5.57 0.00 0.00 3.85
1415 5879 8.240267 AGTAGCTAAATTCTGACTTACCTAGG 57.760 38.462 7.41 7.41 0.00 3.02
1508 5987 7.899973 AGCCAATGAATCTAACAAAATCAACT 58.100 30.769 0.00 0.00 0.00 3.16
1509 5988 8.031277 AGAGCCAATGAATCTAACAAAATCAAC 58.969 33.333 0.00 0.00 0.00 3.18
1511 5990 7.707624 AGAGCCAATGAATCTAACAAAATCA 57.292 32.000 0.00 0.00 0.00 2.57
1512 5991 8.465201 AGAAGAGCCAATGAATCTAACAAAATC 58.535 33.333 0.00 0.00 0.00 2.17
1513 5992 8.358582 AGAAGAGCCAATGAATCTAACAAAAT 57.641 30.769 0.00 0.00 0.00 1.82
1514 5993 7.765695 AGAAGAGCCAATGAATCTAACAAAA 57.234 32.000 0.00 0.00 0.00 2.44
1515 5994 8.103305 ACTAGAAGAGCCAATGAATCTAACAAA 58.897 33.333 0.00 0.00 0.00 2.83
1516 5995 7.624549 ACTAGAAGAGCCAATGAATCTAACAA 58.375 34.615 0.00 0.00 0.00 2.83
1529 6012 6.959639 AAACAAAATCAACTAGAAGAGCCA 57.040 33.333 0.00 0.00 0.00 4.75
1578 6091 5.631026 CATACAAACCGGTGAAATGAAGAG 58.369 41.667 8.52 0.00 0.00 2.85
1641 6159 6.787458 TGGGCTATAAGGATTTAGATCTGTGA 59.213 38.462 5.18 0.00 32.66 3.58
1643 6161 7.821134 ATGGGCTATAAGGATTTAGATCTGT 57.179 36.000 5.18 0.00 32.66 3.41
1681 10389 7.822822 GCAGAGTAAATAAAAACAGAGGGAGTA 59.177 37.037 0.00 0.00 0.00 2.59
1682 10390 6.655425 GCAGAGTAAATAAAAACAGAGGGAGT 59.345 38.462 0.00 0.00 0.00 3.85
1683 10391 6.655003 TGCAGAGTAAATAAAAACAGAGGGAG 59.345 38.462 0.00 0.00 0.00 4.30
1684 10392 6.539173 TGCAGAGTAAATAAAAACAGAGGGA 58.461 36.000 0.00 0.00 0.00 4.20
1685 10393 6.817765 TGCAGAGTAAATAAAAACAGAGGG 57.182 37.500 0.00 0.00 0.00 4.30
1695 10403 9.856488 GTCGGATCTAATATGCAGAGTAAATAA 57.144 33.333 0.00 0.00 0.00 1.40
1696 10404 9.244292 AGTCGGATCTAATATGCAGAGTAAATA 57.756 33.333 0.00 0.00 0.00 1.40
1697 10405 8.031864 CAGTCGGATCTAATATGCAGAGTAAAT 58.968 37.037 0.00 0.00 0.00 1.40
1698 10406 7.230712 TCAGTCGGATCTAATATGCAGAGTAAA 59.769 37.037 0.00 0.00 0.00 2.01
1699 10407 6.715264 TCAGTCGGATCTAATATGCAGAGTAA 59.285 38.462 0.00 0.00 0.00 2.24
1700 10408 6.238648 TCAGTCGGATCTAATATGCAGAGTA 58.761 40.000 0.00 0.00 0.00 2.59
1701 10409 5.073428 TCAGTCGGATCTAATATGCAGAGT 58.927 41.667 0.00 0.00 0.00 3.24
1702 10410 5.635417 TCAGTCGGATCTAATATGCAGAG 57.365 43.478 0.00 0.00 0.00 3.35
1703 10411 5.536538 ACTTCAGTCGGATCTAATATGCAGA 59.463 40.000 0.00 0.00 0.00 4.26
1704 10412 5.632764 CACTTCAGTCGGATCTAATATGCAG 59.367 44.000 0.00 0.00 0.00 4.41
1705 10413 5.301805 TCACTTCAGTCGGATCTAATATGCA 59.698 40.000 0.00 0.00 0.00 3.96
1706 10414 5.773575 TCACTTCAGTCGGATCTAATATGC 58.226 41.667 0.00 0.00 0.00 3.14
1707 10415 7.706607 TGTTTCACTTCAGTCGGATCTAATATG 59.293 37.037 0.00 0.00 0.00 1.78
1708 10416 7.782049 TGTTTCACTTCAGTCGGATCTAATAT 58.218 34.615 0.00 0.00 0.00 1.28
1709 10417 7.165460 TGTTTCACTTCAGTCGGATCTAATA 57.835 36.000 0.00 0.00 0.00 0.98
1710 10418 6.037786 TGTTTCACTTCAGTCGGATCTAAT 57.962 37.500 0.00 0.00 0.00 1.73
1711 10419 5.462530 TGTTTCACTTCAGTCGGATCTAA 57.537 39.130 0.00 0.00 0.00 2.10
1712 10420 5.185056 TGATGTTTCACTTCAGTCGGATCTA 59.815 40.000 0.00 0.00 30.18 1.98
1713 10421 4.021104 TGATGTTTCACTTCAGTCGGATCT 60.021 41.667 0.00 0.00 30.18 2.75
1714 10422 4.245660 TGATGTTTCACTTCAGTCGGATC 58.754 43.478 0.00 0.00 30.18 3.36
1715 10423 4.271696 TGATGTTTCACTTCAGTCGGAT 57.728 40.909 0.00 0.00 30.18 4.18
1716 10424 3.744238 TGATGTTTCACTTCAGTCGGA 57.256 42.857 0.00 0.00 30.18 4.55
1717 10425 6.147821 ACTTTATGATGTTTCACTTCAGTCGG 59.852 38.462 0.00 0.00 36.03 4.79
1718 10426 7.121974 ACTTTATGATGTTTCACTTCAGTCG 57.878 36.000 0.00 0.00 36.03 4.18
1719 10427 9.173939 CAAACTTTATGATGTTTCACTTCAGTC 57.826 33.333 0.00 0.00 36.03 3.51
1720 10428 8.902806 TCAAACTTTATGATGTTTCACTTCAGT 58.097 29.630 0.00 0.00 36.03 3.41
1721 10429 9.173939 GTCAAACTTTATGATGTTTCACTTCAG 57.826 33.333 0.00 0.00 36.03 3.02
1722 10430 8.134895 GGTCAAACTTTATGATGTTTCACTTCA 58.865 33.333 3.78 0.00 36.82 3.02
1723 10431 8.134895 TGGTCAAACTTTATGATGTTTCACTTC 58.865 33.333 3.78 0.00 34.60 3.01
1724 10432 8.006298 TGGTCAAACTTTATGATGTTTCACTT 57.994 30.769 3.78 0.00 34.60 3.16
1725 10433 7.581213 TGGTCAAACTTTATGATGTTTCACT 57.419 32.000 3.78 0.00 34.60 3.41
1726 10434 7.920682 ACTTGGTCAAACTTTATGATGTTTCAC 59.079 33.333 0.00 0.00 34.60 3.18
1727 10435 8.006298 ACTTGGTCAAACTTTATGATGTTTCA 57.994 30.769 0.00 0.00 34.60 2.69
1728 10436 8.871686 AACTTGGTCAAACTTTATGATGTTTC 57.128 30.769 0.00 0.00 34.60 2.78
1782 10490 9.836864 ACACTTTCACATCATATAGATTTGCTA 57.163 29.630 0.00 0.00 34.99 3.49
1783 10491 8.743085 ACACTTTCACATCATATAGATTTGCT 57.257 30.769 0.00 0.00 34.99 3.91
1911 10619 8.823818 CCTCCGTTTTTATTTACTCGACATATT 58.176 33.333 0.00 0.00 0.00 1.28
1912 10620 7.440255 CCCTCCGTTTTTATTTACTCGACATAT 59.560 37.037 0.00 0.00 0.00 1.78
1913 10621 6.757947 CCCTCCGTTTTTATTTACTCGACATA 59.242 38.462 0.00 0.00 0.00 2.29
1914 10622 5.583457 CCCTCCGTTTTTATTTACTCGACAT 59.417 40.000 0.00 0.00 0.00 3.06
1915 10623 4.931002 CCCTCCGTTTTTATTTACTCGACA 59.069 41.667 0.00 0.00 0.00 4.35
1916 10624 5.170748 TCCCTCCGTTTTTATTTACTCGAC 58.829 41.667 0.00 0.00 0.00 4.20
1917 10625 5.047092 ACTCCCTCCGTTTTTATTTACTCGA 60.047 40.000 0.00 0.00 0.00 4.04
1918 10626 5.173664 ACTCCCTCCGTTTTTATTTACTCG 58.826 41.667 0.00 0.00 0.00 4.18
1919 10627 9.822185 TTATACTCCCTCCGTTTTTATTTACTC 57.178 33.333 0.00 0.00 0.00 2.59
1924 10632 9.299465 TGTTTTTATACTCCCTCCGTTTTTATT 57.701 29.630 0.00 0.00 0.00 1.40
1925 10633 8.866970 TGTTTTTATACTCCCTCCGTTTTTAT 57.133 30.769 0.00 0.00 0.00 1.40
1926 10634 8.866970 ATGTTTTTATACTCCCTCCGTTTTTA 57.133 30.769 0.00 0.00 0.00 1.52
1927 10635 7.449086 TGATGTTTTTATACTCCCTCCGTTTTT 59.551 33.333 0.00 0.00 0.00 1.94
1928 10636 6.943718 TGATGTTTTTATACTCCCTCCGTTTT 59.056 34.615 0.00 0.00 0.00 2.43
1929 10637 6.478129 TGATGTTTTTATACTCCCTCCGTTT 58.522 36.000 0.00 0.00 0.00 3.60
1930 10638 6.057321 TGATGTTTTTATACTCCCTCCGTT 57.943 37.500 0.00 0.00 0.00 4.44
1931 10639 5.687166 TGATGTTTTTATACTCCCTCCGT 57.313 39.130 0.00 0.00 0.00 4.69
1932 10640 6.288294 TCATGATGTTTTTATACTCCCTCCG 58.712 40.000 0.00 0.00 0.00 4.63
1933 10641 8.519799 TTTCATGATGTTTTTATACTCCCTCC 57.480 34.615 0.00 0.00 0.00 4.30
1936 10644 9.533253 CCAATTTCATGATGTTTTTATACTCCC 57.467 33.333 0.00 0.00 0.00 4.30
1937 10645 9.533253 CCCAATTTCATGATGTTTTTATACTCC 57.467 33.333 0.00 0.00 0.00 3.85
1938 10646 9.533253 CCCCAATTTCATGATGTTTTTATACTC 57.467 33.333 0.00 0.00 0.00 2.59
1939 10647 9.045745 ACCCCAATTTCATGATGTTTTTATACT 57.954 29.630 0.00 0.00 0.00 2.12
1940 10648 9.097257 CACCCCAATTTCATGATGTTTTTATAC 57.903 33.333 0.00 0.00 0.00 1.47
2182 13259 9.643693 ACAGGATTTGAAGCAATAAAACTAATG 57.356 29.630 0.00 0.00 0.00 1.90
2227 13308 6.703607 AGGAGCGAATACTTCAATATGTTGAG 59.296 38.462 4.99 3.19 44.62 3.02
2258 13339 8.202137 CAGATTTTTGAGATAGGCCATCAAAAT 58.798 33.333 25.59 20.59 46.52 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.