Multiple sequence alignment - TraesCS7D01G527800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G527800 chr7D 100.000 2324 0 0 1 2324 622994450 622996773 0.000000e+00 4292.0
1 TraesCS7D01G527800 chr7D 95.894 682 20 5 1649 2324 108541470 108542149 0.000000e+00 1098.0
2 TraesCS7D01G527800 chr7D 95.627 686 22 6 1647 2324 1823852 1824537 0.000000e+00 1094.0
3 TraesCS7D01G527800 chr7D 82.409 523 46 19 773 1278 623359050 623359543 4.620000e-112 414.0
4 TraesCS7D01G527800 chr7D 99.225 129 1 0 1524 1652 436463826 436463954 1.390000e-57 233.0
5 TraesCS7D01G527800 chr7D 78.947 266 42 11 270 523 440077760 440078023 3.970000e-38 169.0
6 TraesCS7D01G527800 chr7D 78.988 257 39 13 270 513 569752926 569753180 6.650000e-36 161.0
7 TraesCS7D01G527800 chr2D 97.050 678 15 3 1652 2324 590800940 590800263 0.000000e+00 1136.0
8 TraesCS7D01G527800 chr2D 97.033 674 16 4 1652 2324 549483901 549484571 0.000000e+00 1131.0
9 TraesCS7D01G527800 chr2D 96.148 675 21 4 1651 2324 595463020 595463690 0.000000e+00 1098.0
10 TraesCS7D01G527800 chr5D 96.726 672 17 4 1653 2324 564965567 564964901 0.000000e+00 1114.0
11 TraesCS7D01G527800 chr5D 78.947 266 40 13 270 523 435709611 435709872 1.430000e-37 167.0
12 TraesCS7D01G527800 chr3D 95.742 681 25 2 1648 2324 44318077 44318757 0.000000e+00 1094.0
13 TraesCS7D01G527800 chr3D 79.323 266 41 11 270 523 409642664 409642401 8.540000e-40 174.0
14 TraesCS7D01G527800 chr6D 95.988 673 23 3 1653 2324 350496591 350497260 0.000000e+00 1090.0
15 TraesCS7D01G527800 chr6D 97.744 133 3 0 1520 1652 108777445 108777313 1.800000e-56 230.0
16 TraesCS7D01G527800 chr6D 78.884 251 39 10 279 517 99228477 99228725 8.600000e-35 158.0
17 TraesCS7D01G527800 chr6D 78.210 257 42 12 270 513 295226889 295227144 4.000000e-33 152.0
18 TraesCS7D01G527800 chr6D 86.047 86 9 3 2 86 144066116 144066033 3.180000e-14 89.8
19 TraesCS7D01G527800 chr4D 96.000 675 20 6 1653 2324 503665180 503664510 0.000000e+00 1090.0
20 TraesCS7D01G527800 chr4D 78.906 256 42 8 279 523 332376304 332376558 1.850000e-36 163.0
21 TraesCS7D01G527800 chr4D 79.498 239 33 12 270 494 102042014 102042250 3.090000e-34 156.0
22 TraesCS7D01G527800 chr7B 90.088 797 44 20 753 1517 720948764 720947971 0.000000e+00 1002.0
23 TraesCS7D01G527800 chr7B 82.888 561 71 12 220 759 720949571 720949015 4.490000e-132 481.0
24 TraesCS7D01G527800 chr7B 80.527 683 79 32 632 1292 720932924 720932274 2.090000e-130 475.0
25 TraesCS7D01G527800 chr7B 85.083 362 47 6 923 1282 720829073 720828717 1.700000e-96 363.0
26 TraesCS7D01G527800 chr7B 77.941 204 27 10 632 832 720829334 720829146 6.790000e-21 111.0
27 TraesCS7D01G527800 chr7A 85.822 797 57 27 753 1519 718440932 718440162 0.000000e+00 795.0
28 TraesCS7D01G527800 chr7A 83.019 530 62 19 773 1286 718427381 718426864 2.720000e-124 455.0
29 TraesCS7D01G527800 chr7A 82.197 528 58 18 773 1278 718344098 718343585 2.760000e-114 422.0
30 TraesCS7D01G527800 chr7A 89.124 331 36 0 952 1282 718265236 718264906 1.660000e-111 412.0
31 TraesCS7D01G527800 chr7A 81.387 274 28 12 935 1189 718522979 718522710 3.920000e-48 202.0
32 TraesCS7D01G527800 chr7A 78.853 279 45 10 257 523 110674812 110675088 2.370000e-40 176.0
33 TraesCS7D01G527800 chr7A 79.259 270 42 11 266 523 276650712 276650445 2.370000e-40 176.0
34 TraesCS7D01G527800 chr7A 79.389 262 40 11 274 523 711592075 711592334 3.070000e-39 172.0
35 TraesCS7D01G527800 chr7A 80.159 126 11 2 773 884 718265400 718265275 5.320000e-12 82.4
36 TraesCS7D01G527800 chr2B 98.496 133 2 0 1520 1652 28009923 28010055 3.860000e-58 235.0
37 TraesCS7D01G527800 chr2B 98.496 133 2 0 1520 1652 28085386 28085254 3.860000e-58 235.0
38 TraesCS7D01G527800 chr2B 97.744 133 3 0 1520 1652 598620674 598620542 1.800000e-56 230.0
39 TraesCS7D01G527800 chr2B 97.744 133 3 0 1520 1652 759350614 759350482 1.800000e-56 230.0
40 TraesCS7D01G527800 chr6B 96.992 133 4 0 1520 1652 63517203 63517335 8.360000e-55 224.0
41 TraesCS7D01G527800 chr5A 96.992 133 3 1 1520 1652 41408471 41408602 3.010000e-54 222.0
42 TraesCS7D01G527800 chr5B 93.939 132 7 1 1520 1650 708333420 708333289 5.070000e-47 198.0
43 TraesCS7D01G527800 chr5B 79.070 258 38 15 279 523 399496042 399496296 1.850000e-36 163.0
44 TraesCS7D01G527800 chrUn 79.336 271 46 10 252 517 21756238 21756503 5.100000e-42 182.0
45 TraesCS7D01G527800 chrUn 78.077 260 41 13 279 523 284377968 284377710 1.440000e-32 150.0
46 TraesCS7D01G527800 chrUn 78.543 247 40 12 279 513 398593740 398593495 1.440000e-32 150.0
47 TraesCS7D01G527800 chrUn 77.108 249 47 9 279 517 241852088 241852336 4.030000e-28 135.0
48 TraesCS7D01G527800 chrUn 77.143 245 46 9 279 513 87719858 87719614 1.450000e-27 134.0
49 TraesCS7D01G527800 chrUn 76.654 257 46 12 279 523 31477262 31477516 1.870000e-26 130.0
50 TraesCS7D01G527800 chrUn 76.562 256 46 12 279 523 208668146 208668398 6.740000e-26 128.0
51 TraesCS7D01G527800 chrUn 76.562 256 46 12 279 523 256167807 256168059 6.740000e-26 128.0
52 TraesCS7D01G527800 chrUn 76.562 256 46 12 279 523 275352977 275352725 6.740000e-26 128.0
53 TraesCS7D01G527800 chr4A 78.425 292 48 13 244 523 395629474 395629186 2.370000e-40 176.0
54 TraesCS7D01G527800 chr1A 79.767 257 40 11 278 523 23023139 23023394 2.370000e-40 176.0
55 TraesCS7D01G527800 chr1A 79.352 247 37 13 279 513 117598759 117598515 6.650000e-36 161.0
56 TraesCS7D01G527800 chr1A 79.352 247 37 13 279 513 117636142 117635898 6.650000e-36 161.0
57 TraesCS7D01G527800 chr1A 79.268 246 39 11 279 513 564593437 564593681 6.650000e-36 161.0
58 TraesCS7D01G527800 chr1A 78.544 261 41 13 276 523 111137680 111137422 8.600000e-35 158.0
59 TraesCS7D01G527800 chr1A 78.030 264 46 9 270 523 576281882 576282143 3.090000e-34 156.0
60 TraesCS7D01G527800 chr1D 79.323 266 41 11 270 523 64213838 64214101 8.540000e-40 174.0
61 TraesCS7D01G527800 chr1D 77.778 261 40 14 279 523 97427260 97427518 6.690000e-31 145.0
62 TraesCS7D01G527800 chr6A 78.339 277 46 12 259 523 526646854 526647128 1.430000e-37 167.0
63 TraesCS7D01G527800 chr4B 79.352 247 36 13 279 513 523334956 523334713 2.390000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G527800 chr7D 622994450 622996773 2323 False 4292.0 4292 100.000 1 2324 1 chr7D.!!$F6 2323
1 TraesCS7D01G527800 chr7D 108541470 108542149 679 False 1098.0 1098 95.894 1649 2324 1 chr7D.!!$F2 675
2 TraesCS7D01G527800 chr7D 1823852 1824537 685 False 1094.0 1094 95.627 1647 2324 1 chr7D.!!$F1 677
3 TraesCS7D01G527800 chr2D 590800263 590800940 677 True 1136.0 1136 97.050 1652 2324 1 chr2D.!!$R1 672
4 TraesCS7D01G527800 chr2D 549483901 549484571 670 False 1131.0 1131 97.033 1652 2324 1 chr2D.!!$F1 672
5 TraesCS7D01G527800 chr2D 595463020 595463690 670 False 1098.0 1098 96.148 1651 2324 1 chr2D.!!$F2 673
6 TraesCS7D01G527800 chr5D 564964901 564965567 666 True 1114.0 1114 96.726 1653 2324 1 chr5D.!!$R1 671
7 TraesCS7D01G527800 chr3D 44318077 44318757 680 False 1094.0 1094 95.742 1648 2324 1 chr3D.!!$F1 676
8 TraesCS7D01G527800 chr6D 350496591 350497260 669 False 1090.0 1090 95.988 1653 2324 1 chr6D.!!$F3 671
9 TraesCS7D01G527800 chr4D 503664510 503665180 670 True 1090.0 1090 96.000 1653 2324 1 chr4D.!!$R1 671
10 TraesCS7D01G527800 chr7B 720947971 720949571 1600 True 741.5 1002 86.488 220 1517 2 chr7B.!!$R3 1297
11 TraesCS7D01G527800 chr7B 720932274 720932924 650 True 475.0 475 80.527 632 1292 1 chr7B.!!$R1 660
12 TraesCS7D01G527800 chr7B 720828717 720829334 617 True 237.0 363 81.512 632 1282 2 chr7B.!!$R2 650
13 TraesCS7D01G527800 chr7A 718440162 718440932 770 True 795.0 795 85.822 753 1519 1 chr7A.!!$R4 766
14 TraesCS7D01G527800 chr7A 718426864 718427381 517 True 455.0 455 83.019 773 1286 1 chr7A.!!$R3 513
15 TraesCS7D01G527800 chr7A 718343585 718344098 513 True 422.0 422 82.197 773 1278 1 chr7A.!!$R2 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.041238 TTCCCTCTCGACACCCTGAT 59.959 55.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1876 0.107361 TCATGTGCATCTGAGCCTGG 60.107 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.810545 TTCTTTCGAAATTTTGTGGTATTTTCT 57.189 25.926 11.70 0.00 0.00 2.52
58 59 7.408123 ACTATAATCATATAGCGACGTGTAGC 58.592 38.462 0.00 0.00 43.22 3.58
59 60 4.499037 AATCATATAGCGACGTGTAGCA 57.501 40.909 7.81 0.00 33.49 3.49
60 61 3.263602 TCATATAGCGACGTGTAGCAC 57.736 47.619 7.81 0.00 33.49 4.40
61 62 2.031420 TCATATAGCGACGTGTAGCACC 60.031 50.000 7.81 0.00 33.49 5.01
62 63 0.664761 TATAGCGACGTGTAGCACCC 59.335 55.000 7.81 0.00 33.49 4.61
63 64 2.332362 ATAGCGACGTGTAGCACCCG 62.332 60.000 7.81 0.00 33.49 5.28
64 65 4.409218 GCGACGTGTAGCACCCGA 62.409 66.667 0.00 0.00 31.87 5.14
65 66 2.202440 CGACGTGTAGCACCCGAG 60.202 66.667 0.00 0.00 31.87 4.63
66 67 2.683859 CGACGTGTAGCACCCGAGA 61.684 63.158 0.00 0.00 31.87 4.04
67 68 1.136984 GACGTGTAGCACCCGAGAG 59.863 63.158 0.00 0.00 0.00 3.20
68 69 2.202623 CGTGTAGCACCCGAGAGC 60.203 66.667 0.00 0.00 0.00 4.09
69 70 2.184579 GTGTAGCACCCGAGAGCC 59.815 66.667 0.00 0.00 0.00 4.70
70 71 2.283604 TGTAGCACCCGAGAGCCA 60.284 61.111 0.00 0.00 0.00 4.75
71 72 2.184579 GTAGCACCCGAGAGCCAC 59.815 66.667 0.00 0.00 0.00 5.01
72 73 2.283604 TAGCACCCGAGAGCCACA 60.284 61.111 0.00 0.00 0.00 4.17
73 74 1.911269 TAGCACCCGAGAGCCACAA 60.911 57.895 0.00 0.00 0.00 3.33
74 75 1.476845 TAGCACCCGAGAGCCACAAA 61.477 55.000 0.00 0.00 0.00 2.83
75 76 1.675641 GCACCCGAGAGCCACAAAT 60.676 57.895 0.00 0.00 0.00 2.32
76 77 1.648467 GCACCCGAGAGCCACAAATC 61.648 60.000 0.00 0.00 0.00 2.17
77 78 1.026718 CACCCGAGAGCCACAAATCC 61.027 60.000 0.00 0.00 0.00 3.01
78 79 1.201429 ACCCGAGAGCCACAAATCCT 61.201 55.000 0.00 0.00 0.00 3.24
79 80 0.462759 CCCGAGAGCCACAAATCCTC 60.463 60.000 0.00 0.00 0.00 3.71
80 81 0.250234 CCGAGAGCCACAAATCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
81 82 1.134280 CCGAGAGCCACAAATCCTCAT 60.134 52.381 0.00 0.00 0.00 2.90
82 83 2.208431 CGAGAGCCACAAATCCTCATC 58.792 52.381 0.00 0.00 0.00 2.92
83 84 2.570135 GAGAGCCACAAATCCTCATCC 58.430 52.381 0.00 0.00 0.00 3.51
84 85 2.172293 GAGAGCCACAAATCCTCATCCT 59.828 50.000 0.00 0.00 0.00 3.24
85 86 2.092538 AGAGCCACAAATCCTCATCCTG 60.093 50.000 0.00 0.00 0.00 3.86
86 87 1.637553 AGCCACAAATCCTCATCCTGT 59.362 47.619 0.00 0.00 0.00 4.00
87 88 2.846206 AGCCACAAATCCTCATCCTGTA 59.154 45.455 0.00 0.00 0.00 2.74
88 89 3.118112 AGCCACAAATCCTCATCCTGTAG 60.118 47.826 0.00 0.00 0.00 2.74
89 90 3.370953 GCCACAAATCCTCATCCTGTAGT 60.371 47.826 0.00 0.00 0.00 2.73
90 91 4.141711 GCCACAAATCCTCATCCTGTAGTA 60.142 45.833 0.00 0.00 0.00 1.82
91 92 5.360591 CCACAAATCCTCATCCTGTAGTAC 58.639 45.833 0.00 0.00 0.00 2.73
92 93 5.129485 CCACAAATCCTCATCCTGTAGTACT 59.871 44.000 0.00 0.00 0.00 2.73
93 94 6.352222 CCACAAATCCTCATCCTGTAGTACTT 60.352 42.308 0.00 0.00 0.00 2.24
94 95 6.536582 CACAAATCCTCATCCTGTAGTACTTG 59.463 42.308 0.00 0.00 0.00 3.16
95 96 5.878406 AATCCTCATCCTGTAGTACTTGG 57.122 43.478 0.00 1.63 0.00 3.61
96 97 3.643237 TCCTCATCCTGTAGTACTTGGG 58.357 50.000 0.00 1.27 0.00 4.12
97 98 3.271225 TCCTCATCCTGTAGTACTTGGGA 59.729 47.826 0.00 7.15 0.00 4.37
98 99 4.078571 TCCTCATCCTGTAGTACTTGGGAT 60.079 45.833 0.00 9.20 37.28 3.85
99 100 4.656112 CCTCATCCTGTAGTACTTGGGATT 59.344 45.833 16.32 5.19 34.94 3.01
100 101 5.839063 CCTCATCCTGTAGTACTTGGGATTA 59.161 44.000 16.32 10.85 34.94 1.75
101 102 6.498651 CCTCATCCTGTAGTACTTGGGATTAT 59.501 42.308 16.32 1.33 34.94 1.28
102 103 7.674348 CCTCATCCTGTAGTACTTGGGATTATA 59.326 40.741 16.32 8.35 34.94 0.98
103 104 9.261035 CTCATCCTGTAGTACTTGGGATTATAT 57.739 37.037 16.32 0.79 34.94 0.86
104 105 9.035890 TCATCCTGTAGTACTTGGGATTATATG 57.964 37.037 16.32 10.00 34.94 1.78
105 106 9.035890 CATCCTGTAGTACTTGGGATTATATGA 57.964 37.037 16.32 0.00 34.94 2.15
106 107 9.615660 ATCCTGTAGTACTTGGGATTATATGAA 57.384 33.333 0.00 0.00 33.55 2.57
107 108 8.867097 TCCTGTAGTACTTGGGATTATATGAAC 58.133 37.037 0.00 0.00 0.00 3.18
108 109 7.813148 CCTGTAGTACTTGGGATTATATGAACG 59.187 40.741 0.00 0.00 0.00 3.95
109 110 8.241497 TGTAGTACTTGGGATTATATGAACGT 57.759 34.615 0.00 0.00 0.00 3.99
110 111 8.139350 TGTAGTACTTGGGATTATATGAACGTG 58.861 37.037 0.00 0.00 0.00 4.49
111 112 5.989777 AGTACTTGGGATTATATGAACGTGC 59.010 40.000 0.00 0.00 0.00 5.34
112 113 4.134563 ACTTGGGATTATATGAACGTGCC 58.865 43.478 0.00 0.00 0.00 5.01
113 114 2.761559 TGGGATTATATGAACGTGCCG 58.238 47.619 0.00 0.00 0.00 5.69
114 115 2.103432 TGGGATTATATGAACGTGCCGT 59.897 45.455 0.00 0.00 43.97 5.68
115 116 2.735134 GGGATTATATGAACGTGCCGTC 59.265 50.000 0.00 0.00 39.99 4.79
116 117 2.407361 GGATTATATGAACGTGCCGTCG 59.593 50.000 0.00 0.00 39.99 5.12
117 118 1.202203 TTATATGAACGTGCCGTCGC 58.798 50.000 0.00 0.00 39.99 5.19
118 119 0.100861 TATATGAACGTGCCGTCGCA 59.899 50.000 0.00 3.83 44.78 5.10
126 127 3.044280 TGCCGTCGCAGTCAAGTA 58.956 55.556 0.00 0.00 41.12 2.24
127 128 1.372499 TGCCGTCGCAGTCAAGTAC 60.372 57.895 0.00 0.00 41.12 2.73
128 129 2.434134 GCCGTCGCAGTCAAGTACG 61.434 63.158 0.00 0.00 34.03 3.67
129 130 1.081641 CCGTCGCAGTCAAGTACGT 60.082 57.895 0.00 0.00 31.87 3.57
130 131 1.063951 CCGTCGCAGTCAAGTACGTC 61.064 60.000 0.00 0.00 31.87 4.34
131 132 1.386293 CGTCGCAGTCAAGTACGTCG 61.386 60.000 0.00 0.00 0.00 5.12
132 133 0.385223 GTCGCAGTCAAGTACGTCGT 60.385 55.000 2.21 2.21 0.00 4.34
133 134 0.385098 TCGCAGTCAAGTACGTCGTG 60.385 55.000 8.47 0.00 0.00 4.35
134 135 1.773496 GCAGTCAAGTACGTCGTGC 59.227 57.895 8.47 6.77 0.00 5.34
135 136 1.615107 GCAGTCAAGTACGTCGTGCC 61.615 60.000 8.47 0.00 0.00 5.01
136 137 1.081641 AGTCAAGTACGTCGTGCCG 60.082 57.895 8.47 0.94 0.00 5.69
137 138 2.084681 GTCAAGTACGTCGTGCCGG 61.085 63.158 8.47 0.00 0.00 6.13
138 139 3.475774 CAAGTACGTCGTGCCGGC 61.476 66.667 22.73 22.73 0.00 6.13
145 146 4.112341 GTCGTGCCGGCGTAGAGT 62.112 66.667 23.90 0.00 0.00 3.24
146 147 2.436469 TCGTGCCGGCGTAGAGTA 60.436 61.111 23.90 0.00 0.00 2.59
147 148 2.039974 TCGTGCCGGCGTAGAGTAA 61.040 57.895 23.90 0.00 0.00 2.24
148 149 1.153978 CGTGCCGGCGTAGAGTAAA 60.154 57.895 23.90 0.00 0.00 2.01
149 150 0.733566 CGTGCCGGCGTAGAGTAAAA 60.734 55.000 23.90 0.00 0.00 1.52
150 151 0.717784 GTGCCGGCGTAGAGTAAAAC 59.282 55.000 23.90 6.17 0.00 2.43
151 152 0.604578 TGCCGGCGTAGAGTAAAACT 59.395 50.000 23.90 0.00 0.00 2.66
152 153 1.275505 GCCGGCGTAGAGTAAAACTC 58.724 55.000 12.58 0.00 45.38 3.01
164 165 5.388408 GAGTAAAACTCTTTCCCTCTCGA 57.612 43.478 0.00 0.00 41.88 4.04
165 166 5.136816 AGTAAAACTCTTTCCCTCTCGAC 57.863 43.478 0.00 0.00 0.00 4.20
166 167 4.587684 AGTAAAACTCTTTCCCTCTCGACA 59.412 41.667 0.00 0.00 0.00 4.35
167 168 3.388345 AAACTCTTTCCCTCTCGACAC 57.612 47.619 0.00 0.00 0.00 3.67
168 169 1.258676 ACTCTTTCCCTCTCGACACC 58.741 55.000 0.00 0.00 0.00 4.16
169 170 0.533032 CTCTTTCCCTCTCGACACCC 59.467 60.000 0.00 0.00 0.00 4.61
170 171 0.114560 TCTTTCCCTCTCGACACCCT 59.885 55.000 0.00 0.00 0.00 4.34
171 172 0.247736 CTTTCCCTCTCGACACCCTG 59.752 60.000 0.00 0.00 0.00 4.45
172 173 0.178944 TTTCCCTCTCGACACCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
173 174 0.041238 TTCCCTCTCGACACCCTGAT 59.959 55.000 0.00 0.00 0.00 2.90
174 175 0.395862 TCCCTCTCGACACCCTGATC 60.396 60.000 0.00 0.00 0.00 2.92
175 176 1.729470 CCCTCTCGACACCCTGATCG 61.729 65.000 0.00 0.00 39.72 3.69
176 177 1.729470 CCTCTCGACACCCTGATCGG 61.729 65.000 0.00 0.00 38.86 4.18
177 178 2.105128 CTCGACACCCTGATCGGC 59.895 66.667 0.00 0.00 38.86 5.54
178 179 3.432051 CTCGACACCCTGATCGGCC 62.432 68.421 0.00 0.00 38.86 6.13
179 180 4.873129 CGACACCCTGATCGGCCG 62.873 72.222 22.12 22.12 34.67 6.13
185 186 4.473520 CCTGATCGGCCGCCTGTT 62.474 66.667 23.51 1.64 0.00 3.16
186 187 2.892425 CTGATCGGCCGCCTGTTC 60.892 66.667 23.51 12.20 0.00 3.18
187 188 3.376935 CTGATCGGCCGCCTGTTCT 62.377 63.158 23.51 0.00 0.00 3.01
188 189 2.125106 GATCGGCCGCCTGTTCTT 60.125 61.111 23.51 0.00 0.00 2.52
189 190 2.436646 ATCGGCCGCCTGTTCTTG 60.437 61.111 23.51 0.00 0.00 3.02
190 191 3.976701 ATCGGCCGCCTGTTCTTGG 62.977 63.158 23.51 0.00 0.00 3.61
192 193 3.365265 GGCCGCCTGTTCTTGGTG 61.365 66.667 0.71 0.00 35.05 4.17
193 194 2.281484 GCCGCCTGTTCTTGGTGA 60.281 61.111 0.00 0.00 37.26 4.02
194 195 2.328099 GCCGCCTGTTCTTGGTGAG 61.328 63.158 0.00 0.00 37.26 3.51
195 196 2.328099 CCGCCTGTTCTTGGTGAGC 61.328 63.158 0.00 0.00 37.26 4.26
196 197 1.597854 CGCCTGTTCTTGGTGAGCA 60.598 57.895 0.00 0.00 37.26 4.26
197 198 1.165907 CGCCTGTTCTTGGTGAGCAA 61.166 55.000 0.00 0.00 35.52 3.91
198 199 0.595095 GCCTGTTCTTGGTGAGCAAG 59.405 55.000 17.64 17.64 35.52 4.01
199 200 1.815408 GCCTGTTCTTGGTGAGCAAGA 60.815 52.381 21.77 21.77 35.52 3.02
200 201 2.149578 CCTGTTCTTGGTGAGCAAGAG 58.850 52.381 23.82 14.34 39.49 2.85
201 202 2.149578 CTGTTCTTGGTGAGCAAGAGG 58.850 52.381 23.82 15.42 39.49 3.69
202 203 1.490490 TGTTCTTGGTGAGCAAGAGGT 59.510 47.619 23.82 0.00 39.49 3.85
203 204 1.876156 GTTCTTGGTGAGCAAGAGGTG 59.124 52.381 23.82 0.95 39.49 4.00
204 205 0.397941 TCTTGGTGAGCAAGAGGTGG 59.602 55.000 21.77 0.00 34.16 4.61
205 206 1.228245 TTGGTGAGCAAGAGGTGGC 60.228 57.895 0.00 0.00 0.00 5.01
206 207 1.993701 TTGGTGAGCAAGAGGTGGCA 61.994 55.000 0.00 0.00 0.00 4.92
207 208 1.968540 GGTGAGCAAGAGGTGGCAC 60.969 63.158 9.70 9.70 0.00 5.01
208 209 1.227943 GTGAGCAAGAGGTGGCACA 60.228 57.895 20.82 0.00 0.00 4.57
239 240 4.753516 TGTCACATACACCTCCTTATGG 57.246 45.455 0.00 0.00 31.43 2.74
243 244 1.774254 CATACACCTCCTTATGGCCCA 59.226 52.381 0.00 0.00 0.00 5.36
248 249 1.225694 ACCTCCTTATGGCCCATAGGA 59.774 52.381 15.74 16.09 33.47 2.94
249 250 2.157786 ACCTCCTTATGGCCCATAGGAT 60.158 50.000 15.74 4.12 33.47 3.24
255 256 2.425143 ATGGCCCATAGGATATTGCG 57.575 50.000 0.00 0.00 33.47 4.85
261 262 2.350522 CCATAGGATATTGCGTGAGGC 58.649 52.381 0.00 0.00 43.96 4.70
262 263 2.350522 CATAGGATATTGCGTGAGGCC 58.649 52.381 0.00 0.00 42.61 5.19
273 274 2.125552 TGAGGCCGCTCACAATCG 60.126 61.111 8.34 0.00 0.00 3.34
274 275 2.184322 GAGGCCGCTCACAATCGA 59.816 61.111 0.00 0.00 0.00 3.59
277 278 0.605319 AGGCCGCTCACAATCGAAAA 60.605 50.000 0.00 0.00 0.00 2.29
323 324 9.776158 GCATATGATACTAGTGTGTGATACTAC 57.224 37.037 6.97 0.00 0.00 2.73
329 330 6.761099 ACTAGTGTGTGATACTACCTTCAG 57.239 41.667 0.00 0.00 0.00 3.02
330 331 5.652891 ACTAGTGTGTGATACTACCTTCAGG 59.347 44.000 0.00 0.00 42.17 3.86
331 332 4.673968 AGTGTGTGATACTACCTTCAGGA 58.326 43.478 0.00 0.00 38.94 3.86
340 341 6.498303 TGATACTACCTTCAGGATGCATATGT 59.502 38.462 0.00 0.00 38.94 2.29
365 366 9.988815 GTCATAACTTGGTATCATAGTGATCTT 57.011 33.333 0.00 0.00 38.26 2.40
442 443 4.873010 TGATAGTCAGGCCTCTCTTTACT 58.127 43.478 0.00 2.38 0.00 2.24
450 451 5.187186 TCAGGCCTCTCTTTACTCGTTTAAT 59.813 40.000 0.00 0.00 0.00 1.40
453 454 7.711339 CAGGCCTCTCTTTACTCGTTTAATTAT 59.289 37.037 0.00 0.00 0.00 1.28
454 455 7.711339 AGGCCTCTCTTTACTCGTTTAATTATG 59.289 37.037 0.00 0.00 0.00 1.90
480 492 9.736023 GTCATCTTAATAAAAATGCCTAGTTGG 57.264 33.333 0.00 0.00 39.35 3.77
485 497 8.940768 TTAATAAAAATGCCTAGTTGGAATGC 57.059 30.769 0.00 0.00 33.25 3.56
495 507 6.176183 GCCTAGTTGGAATGCATGATACTAT 58.824 40.000 0.00 0.00 38.35 2.12
496 508 6.093219 GCCTAGTTGGAATGCATGATACTATG 59.907 42.308 0.00 4.99 38.35 2.23
517 532 9.775539 ACTATGTATGATAGTCCCATTATGACT 57.224 33.333 0.00 0.00 44.85 3.41
521 536 6.552445 ATGATAGTCCCATTATGACTAGCC 57.448 41.667 11.73 5.04 46.18 3.93
527 542 2.158769 CCCATTATGACTAGCCTGTGCA 60.159 50.000 0.00 0.00 41.13 4.57
532 547 1.225855 TGACTAGCCTGTGCAAAACG 58.774 50.000 0.00 0.00 41.13 3.60
564 585 4.640771 AAATAAGGCTGAGTTCCACAGA 57.359 40.909 0.00 0.00 37.54 3.41
567 588 3.297134 AAGGCTGAGTTCCACAGAAAA 57.703 42.857 0.00 0.00 37.54 2.29
572 593 4.943705 GGCTGAGTTCCACAGAAAATATGA 59.056 41.667 0.00 0.00 37.54 2.15
575 596 6.150140 GCTGAGTTCCACAGAAAATATGAACT 59.850 38.462 0.00 0.00 43.56 3.01
583 604 6.750501 CCACAGAAAATATGAACTTCTGCATG 59.249 38.462 10.21 0.00 46.54 4.06
587 608 4.644103 AATATGAACTTCTGCATGGTGC 57.356 40.909 0.00 0.00 45.29 5.01
607 628 2.494445 GCGCCAGGGTAAAATGCC 59.506 61.111 0.00 0.00 0.00 4.40
618 639 5.046376 CAGGGTAAAATGCCTCATTTCCTTT 60.046 40.000 5.39 0.00 42.32 3.11
658 679 4.050037 AGTAACCCTTTCCTAATACCCCC 58.950 47.826 0.00 0.00 0.00 5.40
669 690 0.251165 AATACCCCCTGTGTGTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
696 717 2.226437 CACACATACTTCCACAGTTGCC 59.774 50.000 0.00 0.00 36.88 4.52
702 723 3.073274 ACTTCCACAGTTGCCCTATTC 57.927 47.619 0.00 0.00 27.32 1.75
711 734 4.935808 ACAGTTGCCCTATTCTTTTAGACG 59.064 41.667 0.00 0.00 0.00 4.18
725 748 7.235935 TCTTTTAGACGTAAGGAATCTTGGA 57.764 36.000 0.00 0.00 46.39 3.53
761 1042 2.022918 AGGCAGTCTGACCTAATACCCT 60.023 50.000 12.50 0.06 33.38 4.34
816 1097 4.511246 TACGTCGCCCTCCCGGAT 62.511 66.667 0.73 0.00 0.00 4.18
857 1152 3.640407 ACCACATGCAGACCGGCT 61.640 61.111 0.00 0.00 34.04 5.52
884 1185 1.666189 GCTACCTCCACAATTCGCTTC 59.334 52.381 0.00 0.00 0.00 3.86
912 1213 0.776810 TGCTCCCCAGATTTGAACCA 59.223 50.000 0.00 0.00 0.00 3.67
913 1214 1.272092 TGCTCCCCAGATTTGAACCAG 60.272 52.381 0.00 0.00 0.00 4.00
914 1215 1.467920 CTCCCCAGATTTGAACCAGC 58.532 55.000 0.00 0.00 0.00 4.85
1083 1391 1.527370 GCCCGGCTTCTTCCTATGT 59.473 57.895 0.71 0.00 0.00 2.29
1216 1524 1.677552 GCTTGGAAACCGGAGAGGA 59.322 57.895 9.46 0.00 45.00 3.71
1249 1557 3.319198 GGGTGTCCGAGGAGCCAA 61.319 66.667 12.64 0.00 0.00 4.52
1250 1558 2.670148 GGGTGTCCGAGGAGCCAAT 61.670 63.158 12.64 0.00 0.00 3.16
1253 1561 1.112113 GTGTCCGAGGAGCCAATAGA 58.888 55.000 0.00 0.00 0.00 1.98
1319 1655 3.808174 GGCTATAATTGGTCGTTCAGTCC 59.192 47.826 0.00 0.00 0.00 3.85
1322 1658 5.050091 GCTATAATTGGTCGTTCAGTCCATG 60.050 44.000 0.00 0.00 37.85 3.66
1323 1659 3.417069 AATTGGTCGTTCAGTCCATGA 57.583 42.857 0.00 0.00 37.85 3.07
1387 1725 4.523943 TGTTTCAAGCTCCTATTGTGCATT 59.476 37.500 0.00 0.00 35.92 3.56
1477 1815 5.236263 GGTTGACACAAAATTTCCCATTCAC 59.764 40.000 0.00 0.00 0.00 3.18
1527 1865 8.422577 AAAATTGGATTTATATAGGACAGGGC 57.577 34.615 0.00 0.00 0.00 5.19
1528 1866 4.819105 TGGATTTATATAGGACAGGGCG 57.181 45.455 0.00 0.00 0.00 6.13
1529 1867 4.164981 TGGATTTATATAGGACAGGGCGT 58.835 43.478 0.00 0.00 0.00 5.68
1530 1868 4.595781 TGGATTTATATAGGACAGGGCGTT 59.404 41.667 0.00 0.00 0.00 4.84
1531 1869 5.072600 TGGATTTATATAGGACAGGGCGTTT 59.927 40.000 0.00 0.00 0.00 3.60
1532 1870 6.002082 GGATTTATATAGGACAGGGCGTTTT 58.998 40.000 0.00 0.00 0.00 2.43
1533 1871 6.072673 GGATTTATATAGGACAGGGCGTTTTG 60.073 42.308 0.00 0.00 0.00 2.44
1534 1872 2.702592 TATAGGACAGGGCGTTTTGG 57.297 50.000 0.00 0.00 0.00 3.28
1535 1873 0.696501 ATAGGACAGGGCGTTTTGGT 59.303 50.000 0.00 0.00 0.00 3.67
1536 1874 0.250553 TAGGACAGGGCGTTTTGGTG 60.251 55.000 0.00 0.00 0.00 4.17
1537 1875 2.335011 GACAGGGCGTTTTGGTGC 59.665 61.111 0.00 0.00 0.00 5.01
1542 1880 3.989787 GGCGTTTTGGTGCCCAGG 61.990 66.667 0.00 0.00 45.73 4.45
1543 1881 4.662961 GCGTTTTGGTGCCCAGGC 62.663 66.667 0.38 0.38 42.35 4.85
1544 1882 2.912025 CGTTTTGGTGCCCAGGCT 60.912 61.111 10.58 0.00 42.51 4.58
1545 1883 2.919494 CGTTTTGGTGCCCAGGCTC 61.919 63.158 10.58 6.18 42.51 4.70
1546 1884 1.832167 GTTTTGGTGCCCAGGCTCA 60.832 57.895 10.58 5.75 42.51 4.26
1547 1885 1.531365 TTTTGGTGCCCAGGCTCAG 60.531 57.895 10.58 0.00 42.51 3.35
1548 1886 2.005606 TTTTGGTGCCCAGGCTCAGA 62.006 55.000 10.58 1.34 42.51 3.27
1549 1887 1.792757 TTTGGTGCCCAGGCTCAGAT 61.793 55.000 10.58 0.00 42.51 2.90
1550 1888 2.124403 GGTGCCCAGGCTCAGATG 60.124 66.667 10.58 0.00 42.51 2.90
1551 1889 2.827642 GTGCCCAGGCTCAGATGC 60.828 66.667 10.58 0.00 42.51 3.91
1552 1890 3.332385 TGCCCAGGCTCAGATGCA 61.332 61.111 10.58 0.00 42.51 3.96
1553 1891 2.827642 GCCCAGGCTCAGATGCAC 60.828 66.667 0.08 0.00 38.26 4.57
1554 1892 2.672908 CCCAGGCTCAGATGCACA 59.327 61.111 0.00 0.00 34.04 4.57
1555 1893 1.226542 CCCAGGCTCAGATGCACAT 59.773 57.895 0.00 0.00 34.04 3.21
1556 1894 1.101635 CCCAGGCTCAGATGCACATG 61.102 60.000 0.00 0.00 34.04 3.21
1557 1895 0.107361 CCAGGCTCAGATGCACATGA 60.107 55.000 0.00 0.00 34.04 3.07
1558 1896 1.477014 CCAGGCTCAGATGCACATGAT 60.477 52.381 0.00 0.00 34.04 2.45
1559 1897 2.224450 CCAGGCTCAGATGCACATGATA 60.224 50.000 0.00 0.00 34.04 2.15
1560 1898 3.559384 CCAGGCTCAGATGCACATGATAT 60.559 47.826 0.00 0.00 34.04 1.63
1561 1899 3.685272 CAGGCTCAGATGCACATGATATC 59.315 47.826 0.00 0.00 34.04 1.63
1562 1900 3.008330 GGCTCAGATGCACATGATATCC 58.992 50.000 0.00 2.82 34.04 2.59
1563 1901 3.307550 GGCTCAGATGCACATGATATCCT 60.308 47.826 0.00 0.00 34.04 3.24
1564 1902 3.685272 GCTCAGATGCACATGATATCCTG 59.315 47.826 0.00 6.46 0.00 3.86
1565 1903 4.803253 GCTCAGATGCACATGATATCCTGT 60.803 45.833 7.74 7.74 0.00 4.00
1566 1904 5.300411 TCAGATGCACATGATATCCTGTT 57.700 39.130 10.57 0.00 0.00 3.16
1567 1905 5.303165 TCAGATGCACATGATATCCTGTTC 58.697 41.667 10.57 7.27 0.00 3.18
1568 1906 4.151867 CAGATGCACATGATATCCTGTTCG 59.848 45.833 10.57 3.13 0.00 3.95
1569 1907 3.541996 TGCACATGATATCCTGTTCGT 57.458 42.857 10.57 0.00 0.00 3.85
1570 1908 3.872696 TGCACATGATATCCTGTTCGTT 58.127 40.909 10.57 0.00 0.00 3.85
1571 1909 3.622612 TGCACATGATATCCTGTTCGTTG 59.377 43.478 10.57 1.92 0.00 4.10
1572 1910 3.871006 GCACATGATATCCTGTTCGTTGA 59.129 43.478 10.57 0.00 0.00 3.18
1573 1911 4.512944 GCACATGATATCCTGTTCGTTGAT 59.487 41.667 10.57 0.00 0.00 2.57
1574 1912 5.008019 GCACATGATATCCTGTTCGTTGATT 59.992 40.000 10.57 0.00 0.00 2.57
1575 1913 6.424683 CACATGATATCCTGTTCGTTGATTG 58.575 40.000 10.57 0.00 0.00 2.67
1576 1914 6.037500 CACATGATATCCTGTTCGTTGATTGT 59.962 38.462 10.57 0.00 0.00 2.71
1577 1915 6.599244 ACATGATATCCTGTTCGTTGATTGTT 59.401 34.615 7.74 0.00 0.00 2.83
1578 1916 6.421377 TGATATCCTGTTCGTTGATTGTTG 57.579 37.500 0.00 0.00 0.00 3.33
1579 1917 5.937540 TGATATCCTGTTCGTTGATTGTTGT 59.062 36.000 0.00 0.00 0.00 3.32
1580 1918 7.100409 TGATATCCTGTTCGTTGATTGTTGTA 58.900 34.615 0.00 0.00 0.00 2.41
1581 1919 7.768582 TGATATCCTGTTCGTTGATTGTTGTAT 59.231 33.333 0.00 0.00 0.00 2.29
1582 1920 5.605564 TCCTGTTCGTTGATTGTTGTATG 57.394 39.130 0.00 0.00 0.00 2.39
1583 1921 4.454161 TCCTGTTCGTTGATTGTTGTATGG 59.546 41.667 0.00 0.00 0.00 2.74
1584 1922 4.379394 CCTGTTCGTTGATTGTTGTATGGG 60.379 45.833 0.00 0.00 0.00 4.00
1585 1923 3.504134 TGTTCGTTGATTGTTGTATGGGG 59.496 43.478 0.00 0.00 0.00 4.96
1586 1924 3.704800 TCGTTGATTGTTGTATGGGGA 57.295 42.857 0.00 0.00 0.00 4.81
1587 1925 4.229304 TCGTTGATTGTTGTATGGGGAT 57.771 40.909 0.00 0.00 0.00 3.85
1588 1926 4.594970 TCGTTGATTGTTGTATGGGGATT 58.405 39.130 0.00 0.00 0.00 3.01
1589 1927 4.397730 TCGTTGATTGTTGTATGGGGATTG 59.602 41.667 0.00 0.00 0.00 2.67
1590 1928 4.439974 CGTTGATTGTTGTATGGGGATTGG 60.440 45.833 0.00 0.00 0.00 3.16
1591 1929 3.641046 TGATTGTTGTATGGGGATTGGG 58.359 45.455 0.00 0.00 0.00 4.12
1592 1930 2.541233 TTGTTGTATGGGGATTGGGG 57.459 50.000 0.00 0.00 0.00 4.96
1593 1931 1.687492 TGTTGTATGGGGATTGGGGA 58.313 50.000 0.00 0.00 0.00 4.81
1594 1932 2.003830 TGTTGTATGGGGATTGGGGAA 58.996 47.619 0.00 0.00 0.00 3.97
1595 1933 2.383683 TGTTGTATGGGGATTGGGGAAA 59.616 45.455 0.00 0.00 0.00 3.13
1596 1934 3.031013 GTTGTATGGGGATTGGGGAAAG 58.969 50.000 0.00 0.00 0.00 2.62
1597 1935 1.063266 TGTATGGGGATTGGGGAAAGC 60.063 52.381 0.00 0.00 0.00 3.51
1598 1936 1.217942 GTATGGGGATTGGGGAAAGCT 59.782 52.381 0.00 0.00 0.00 3.74
1599 1937 1.619298 ATGGGGATTGGGGAAAGCTA 58.381 50.000 0.00 0.00 0.00 3.32
1600 1938 0.926293 TGGGGATTGGGGAAAGCTAG 59.074 55.000 0.00 0.00 0.00 3.42
1601 1939 0.927029 GGGGATTGGGGAAAGCTAGT 59.073 55.000 0.00 0.00 0.00 2.57
1602 1940 1.410224 GGGGATTGGGGAAAGCTAGTG 60.410 57.143 0.00 0.00 0.00 2.74
1603 1941 1.285078 GGGATTGGGGAAAGCTAGTGT 59.715 52.381 0.00 0.00 0.00 3.55
1604 1942 2.644676 GGATTGGGGAAAGCTAGTGTC 58.355 52.381 0.00 0.00 0.00 3.67
1605 1943 2.026262 GGATTGGGGAAAGCTAGTGTCA 60.026 50.000 0.00 0.00 0.00 3.58
1606 1944 2.859165 TTGGGGAAAGCTAGTGTCAG 57.141 50.000 0.00 0.00 0.00 3.51
1607 1945 2.024176 TGGGGAAAGCTAGTGTCAGA 57.976 50.000 0.00 0.00 0.00 3.27
1608 1946 2.551270 TGGGGAAAGCTAGTGTCAGAT 58.449 47.619 0.00 0.00 0.00 2.90
1609 1947 2.237143 TGGGGAAAGCTAGTGTCAGATG 59.763 50.000 0.00 0.00 0.00 2.90
1610 1948 2.420687 GGGGAAAGCTAGTGTCAGATGG 60.421 54.545 0.00 0.00 0.00 3.51
1611 1949 2.284190 GGAAAGCTAGTGTCAGATGGC 58.716 52.381 0.00 0.00 0.00 4.40
1612 1950 2.355108 GGAAAGCTAGTGTCAGATGGCA 60.355 50.000 0.00 0.00 0.00 4.92
1613 1951 2.687700 AAGCTAGTGTCAGATGGCAG 57.312 50.000 0.00 0.00 0.00 4.85
1614 1952 0.829333 AGCTAGTGTCAGATGGCAGG 59.171 55.000 0.00 0.00 0.00 4.85
1615 1953 0.539051 GCTAGTGTCAGATGGCAGGT 59.461 55.000 0.00 0.00 0.00 4.00
1616 1954 1.472376 GCTAGTGTCAGATGGCAGGTC 60.472 57.143 0.00 0.00 0.00 3.85
1617 1955 2.106566 CTAGTGTCAGATGGCAGGTCT 58.893 52.381 0.00 0.00 0.00 3.85
1618 1956 0.612229 AGTGTCAGATGGCAGGTCTG 59.388 55.000 11.10 11.10 43.46 3.51
1619 1957 0.392193 GTGTCAGATGGCAGGTCTGG 60.392 60.000 15.99 1.11 42.58 3.86
1620 1958 0.837691 TGTCAGATGGCAGGTCTGGT 60.838 55.000 15.99 0.00 42.58 4.00
1621 1959 0.326264 GTCAGATGGCAGGTCTGGTT 59.674 55.000 15.99 0.00 42.58 3.67
1622 1960 0.615331 TCAGATGGCAGGTCTGGTTC 59.385 55.000 15.99 0.00 42.58 3.62
1623 1961 0.742281 CAGATGGCAGGTCTGGTTCG 60.742 60.000 9.74 0.00 39.48 3.95
1624 1962 1.194781 AGATGGCAGGTCTGGTTCGT 61.195 55.000 0.00 0.00 0.00 3.85
1625 1963 1.003355 ATGGCAGGTCTGGTTCGTG 60.003 57.895 0.00 0.00 0.00 4.35
1626 1964 2.358737 GGCAGGTCTGGTTCGTGG 60.359 66.667 0.00 0.00 0.00 4.94
1627 1965 2.741092 GCAGGTCTGGTTCGTGGA 59.259 61.111 0.00 0.00 0.00 4.02
1628 1966 1.070786 GCAGGTCTGGTTCGTGGAA 59.929 57.895 0.00 0.00 0.00 3.53
1629 1967 0.534203 GCAGGTCTGGTTCGTGGAAA 60.534 55.000 0.00 0.00 0.00 3.13
1630 1968 1.961793 CAGGTCTGGTTCGTGGAAAA 58.038 50.000 0.00 0.00 0.00 2.29
1631 1969 2.504367 CAGGTCTGGTTCGTGGAAAAT 58.496 47.619 0.00 0.00 0.00 1.82
1632 1970 2.484264 CAGGTCTGGTTCGTGGAAAATC 59.516 50.000 0.00 0.00 0.00 2.17
1633 1971 2.372172 AGGTCTGGTTCGTGGAAAATCT 59.628 45.455 0.00 0.00 0.00 2.40
1634 1972 3.581332 AGGTCTGGTTCGTGGAAAATCTA 59.419 43.478 0.00 0.00 0.00 1.98
1635 1973 3.933332 GGTCTGGTTCGTGGAAAATCTAG 59.067 47.826 0.00 0.00 0.00 2.43
1636 1974 4.322499 GGTCTGGTTCGTGGAAAATCTAGA 60.322 45.833 0.00 0.00 0.00 2.43
1637 1975 5.420409 GTCTGGTTCGTGGAAAATCTAGAT 58.580 41.667 0.00 0.00 0.00 1.98
1638 1976 6.406624 GGTCTGGTTCGTGGAAAATCTAGATA 60.407 42.308 5.46 0.00 0.00 1.98
1639 1977 6.476053 GTCTGGTTCGTGGAAAATCTAGATAC 59.524 42.308 5.46 0.00 0.00 2.24
1640 1978 6.153851 TCTGGTTCGTGGAAAATCTAGATACA 59.846 38.462 5.46 0.68 0.00 2.29
1641 1979 6.338146 TGGTTCGTGGAAAATCTAGATACAG 58.662 40.000 5.46 0.00 0.00 2.74
1642 1980 6.153851 TGGTTCGTGGAAAATCTAGATACAGA 59.846 38.462 5.46 0.30 0.00 3.41
1643 1981 7.147724 TGGTTCGTGGAAAATCTAGATACAGAT 60.148 37.037 5.46 0.00 36.83 2.90
1644 1982 7.711339 GGTTCGTGGAAAATCTAGATACAGATT 59.289 37.037 5.46 0.00 45.17 2.40
1645 1983 9.745880 GTTCGTGGAAAATCTAGATACAGATTA 57.254 33.333 5.46 0.00 43.01 1.75
2021 2379 2.615773 GGGGTTGGGGTTTTGGGA 59.384 61.111 0.00 0.00 0.00 4.37
2199 2557 4.534168 GTCATGAACATATGCATGCAGAC 58.466 43.478 26.69 18.91 41.18 3.51
2229 2587 0.699399 TCGACCACCTCTCCTTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
2233 2591 1.431243 ACCACCTCTCCTTCTCTGAGT 59.569 52.381 4.32 0.00 0.00 3.41
2251 2609 3.942115 TGAGTGATTGGTCGAACAACAAA 59.058 39.130 20.01 3.96 32.39 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.546244 GCTACACGTCGCTATATGATTATAGTA 58.454 37.037 0.00 0.00 39.60 1.82
33 34 7.065443 TGCTACACGTCGCTATATGATTATAGT 59.935 37.037 0.00 0.00 39.60 2.12
34 35 7.373703 GTGCTACACGTCGCTATATGATTATAG 59.626 40.741 0.00 0.00 40.15 1.31
35 36 7.184779 GTGCTACACGTCGCTATATGATTATA 58.815 38.462 0.00 0.00 0.00 0.98
36 37 6.028368 GTGCTACACGTCGCTATATGATTAT 58.972 40.000 0.00 0.00 0.00 1.28
37 38 5.388111 GTGCTACACGTCGCTATATGATTA 58.612 41.667 0.00 0.00 0.00 1.75
38 39 4.227538 GTGCTACACGTCGCTATATGATT 58.772 43.478 0.00 0.00 0.00 2.57
39 40 3.366070 GGTGCTACACGTCGCTATATGAT 60.366 47.826 0.00 0.00 34.83 2.45
40 41 2.031420 GGTGCTACACGTCGCTATATGA 60.031 50.000 0.00 0.00 34.83 2.15
41 42 2.316792 GGTGCTACACGTCGCTATATG 58.683 52.381 0.00 0.00 34.83 1.78
42 43 1.268899 GGGTGCTACACGTCGCTATAT 59.731 52.381 0.00 0.00 34.83 0.86
43 44 0.664761 GGGTGCTACACGTCGCTATA 59.335 55.000 0.00 0.00 34.83 1.31
44 45 1.436336 GGGTGCTACACGTCGCTAT 59.564 57.895 0.00 0.00 34.83 2.97
45 46 2.879907 GGGTGCTACACGTCGCTA 59.120 61.111 0.00 0.00 34.83 4.26
46 47 4.415332 CGGGTGCTACACGTCGCT 62.415 66.667 3.22 0.00 40.74 4.93
47 48 4.409218 TCGGGTGCTACACGTCGC 62.409 66.667 10.06 0.00 46.74 5.19
48 49 2.202440 CTCGGGTGCTACACGTCG 60.202 66.667 10.06 2.92 46.74 5.12
49 50 1.136984 CTCTCGGGTGCTACACGTC 59.863 63.158 10.06 0.00 46.74 4.34
50 51 2.991076 GCTCTCGGGTGCTACACGT 61.991 63.158 1.17 0.00 46.74 4.49
52 53 2.184579 GGCTCTCGGGTGCTACAC 59.815 66.667 9.52 0.00 33.10 2.90
53 54 2.283604 TGGCTCTCGGGTGCTACA 60.284 61.111 9.52 0.00 33.10 2.74
54 55 2.167398 TTGTGGCTCTCGGGTGCTAC 62.167 60.000 17.73 17.73 41.53 3.58
55 56 1.476845 TTTGTGGCTCTCGGGTGCTA 61.477 55.000 9.52 0.00 33.10 3.49
56 57 2.129555 ATTTGTGGCTCTCGGGTGCT 62.130 55.000 9.52 0.00 33.10 4.40
57 58 1.648467 GATTTGTGGCTCTCGGGTGC 61.648 60.000 0.00 0.00 0.00 5.01
58 59 1.026718 GGATTTGTGGCTCTCGGGTG 61.027 60.000 0.00 0.00 0.00 4.61
59 60 1.201429 AGGATTTGTGGCTCTCGGGT 61.201 55.000 0.00 0.00 0.00 5.28
60 61 0.462759 GAGGATTTGTGGCTCTCGGG 60.463 60.000 0.00 0.00 0.00 5.14
61 62 0.250234 TGAGGATTTGTGGCTCTCGG 59.750 55.000 0.00 0.00 0.00 4.63
62 63 2.208431 GATGAGGATTTGTGGCTCTCG 58.792 52.381 0.00 0.00 0.00 4.04
63 64 2.172293 AGGATGAGGATTTGTGGCTCTC 59.828 50.000 0.00 0.00 0.00 3.20
64 65 2.092538 CAGGATGAGGATTTGTGGCTCT 60.093 50.000 0.00 0.00 39.69 4.09
65 66 2.295885 CAGGATGAGGATTTGTGGCTC 58.704 52.381 0.00 0.00 39.69 4.70
66 67 1.637553 ACAGGATGAGGATTTGTGGCT 59.362 47.619 0.00 0.00 39.69 4.75
67 68 2.134789 ACAGGATGAGGATTTGTGGC 57.865 50.000 0.00 0.00 39.69 5.01
68 69 4.494091 ACTACAGGATGAGGATTTGTGG 57.506 45.455 0.00 0.00 39.69 4.17
69 70 6.227298 AGTACTACAGGATGAGGATTTGTG 57.773 41.667 0.00 0.00 39.69 3.33
70 71 6.352222 CCAAGTACTACAGGATGAGGATTTGT 60.352 42.308 0.00 0.00 39.69 2.83
71 72 6.051717 CCAAGTACTACAGGATGAGGATTTG 58.948 44.000 0.00 0.00 39.69 2.32
72 73 5.131142 CCCAAGTACTACAGGATGAGGATTT 59.869 44.000 9.78 0.00 39.69 2.17
73 74 4.656112 CCCAAGTACTACAGGATGAGGATT 59.344 45.833 9.78 0.00 39.69 3.01
74 75 4.078571 TCCCAAGTACTACAGGATGAGGAT 60.079 45.833 9.78 0.00 39.69 3.24
75 76 3.271225 TCCCAAGTACTACAGGATGAGGA 59.729 47.826 9.78 4.12 39.69 3.71
76 77 3.643237 TCCCAAGTACTACAGGATGAGG 58.357 50.000 9.78 2.18 39.69 3.86
77 78 5.878406 AATCCCAAGTACTACAGGATGAG 57.122 43.478 17.50 0.00 39.69 2.90
78 79 9.035890 CATATAATCCCAAGTACTACAGGATGA 57.964 37.037 17.50 12.74 39.69 2.92
79 80 9.035890 TCATATAATCCCAAGTACTACAGGATG 57.964 37.037 17.50 9.60 46.00 3.51
80 81 9.615660 TTCATATAATCCCAAGTACTACAGGAT 57.384 33.333 13.07 13.07 39.02 3.24
81 82 8.867097 GTTCATATAATCCCAAGTACTACAGGA 58.133 37.037 10.05 10.05 0.00 3.86
82 83 7.813148 CGTTCATATAATCCCAAGTACTACAGG 59.187 40.741 0.00 0.00 0.00 4.00
83 84 8.358148 ACGTTCATATAATCCCAAGTACTACAG 58.642 37.037 0.00 0.00 0.00 2.74
84 85 8.139350 CACGTTCATATAATCCCAAGTACTACA 58.861 37.037 0.00 0.00 0.00 2.74
85 86 7.115947 GCACGTTCATATAATCCCAAGTACTAC 59.884 40.741 0.00 0.00 0.00 2.73
86 87 7.149973 GCACGTTCATATAATCCCAAGTACTA 58.850 38.462 0.00 0.00 0.00 1.82
87 88 5.989777 GCACGTTCATATAATCCCAAGTACT 59.010 40.000 0.00 0.00 0.00 2.73
88 89 5.178809 GGCACGTTCATATAATCCCAAGTAC 59.821 44.000 0.00 0.00 0.00 2.73
89 90 5.302360 GGCACGTTCATATAATCCCAAGTA 58.698 41.667 0.00 0.00 0.00 2.24
90 91 4.134563 GGCACGTTCATATAATCCCAAGT 58.865 43.478 0.00 0.00 0.00 3.16
91 92 4.749245 GGCACGTTCATATAATCCCAAG 57.251 45.455 0.00 0.00 0.00 3.61
108 109 1.372499 TACTTGACTGCGACGGCAC 60.372 57.895 0.00 0.00 46.21 5.01
110 111 2.434134 CGTACTTGACTGCGACGGC 61.434 63.158 0.00 0.00 40.52 5.68
111 112 1.063951 GACGTACTTGACTGCGACGG 61.064 60.000 0.00 0.00 37.83 4.79
112 113 1.386293 CGACGTACTTGACTGCGACG 61.386 60.000 0.00 0.00 39.37 5.12
113 114 0.385223 ACGACGTACTTGACTGCGAC 60.385 55.000 0.00 0.00 0.00 5.19
114 115 0.385098 CACGACGTACTTGACTGCGA 60.385 55.000 0.00 0.00 0.00 5.10
115 116 1.930816 GCACGACGTACTTGACTGCG 61.931 60.000 0.00 0.00 0.00 5.18
116 117 1.615107 GGCACGACGTACTTGACTGC 61.615 60.000 0.00 0.00 0.00 4.40
117 118 2.431539 GGCACGACGTACTTGACTG 58.568 57.895 0.00 0.00 0.00 3.51
118 119 4.959446 GGCACGACGTACTTGACT 57.041 55.556 0.00 0.00 0.00 3.41
131 132 0.717784 GTTTTACTCTACGCCGGCAC 59.282 55.000 28.98 9.02 0.00 5.01
132 133 0.604578 AGTTTTACTCTACGCCGGCA 59.395 50.000 28.98 6.80 0.00 5.69
133 134 1.275505 GAGTTTTACTCTACGCCGGC 58.724 55.000 19.07 19.07 41.88 6.13
142 143 5.162794 GTCGAGAGGGAAAGAGTTTTACTC 58.837 45.833 0.00 0.00 45.38 2.59
143 144 4.587684 TGTCGAGAGGGAAAGAGTTTTACT 59.412 41.667 0.00 0.00 0.00 2.24
144 145 4.685165 GTGTCGAGAGGGAAAGAGTTTTAC 59.315 45.833 0.00 0.00 0.00 2.01
145 146 4.262335 GGTGTCGAGAGGGAAAGAGTTTTA 60.262 45.833 0.00 0.00 0.00 1.52
146 147 3.494573 GGTGTCGAGAGGGAAAGAGTTTT 60.495 47.826 0.00 0.00 0.00 2.43
147 148 2.037381 GGTGTCGAGAGGGAAAGAGTTT 59.963 50.000 0.00 0.00 0.00 2.66
148 149 1.619332 GGTGTCGAGAGGGAAAGAGTT 59.381 52.381 0.00 0.00 0.00 3.01
149 150 1.258676 GGTGTCGAGAGGGAAAGAGT 58.741 55.000 0.00 0.00 0.00 3.24
150 151 0.533032 GGGTGTCGAGAGGGAAAGAG 59.467 60.000 0.00 0.00 0.00 2.85
151 152 0.114560 AGGGTGTCGAGAGGGAAAGA 59.885 55.000 0.00 0.00 0.00 2.52
152 153 0.247736 CAGGGTGTCGAGAGGGAAAG 59.752 60.000 0.00 0.00 0.00 2.62
153 154 0.178944 TCAGGGTGTCGAGAGGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
154 155 0.041238 ATCAGGGTGTCGAGAGGGAA 59.959 55.000 0.00 0.00 0.00 3.97
155 156 0.395862 GATCAGGGTGTCGAGAGGGA 60.396 60.000 0.00 0.00 0.00 4.20
156 157 1.729470 CGATCAGGGTGTCGAGAGGG 61.729 65.000 0.00 0.00 40.11 4.30
157 158 1.729470 CCGATCAGGGTGTCGAGAGG 61.729 65.000 0.00 0.00 40.11 3.69
158 159 1.730487 CCGATCAGGGTGTCGAGAG 59.270 63.158 0.00 0.00 40.11 3.20
159 160 2.415608 GCCGATCAGGGTGTCGAGA 61.416 63.158 5.87 0.00 40.11 4.04
160 161 2.105128 GCCGATCAGGGTGTCGAG 59.895 66.667 5.87 0.00 40.11 4.04
161 162 3.458163 GGCCGATCAGGGTGTCGA 61.458 66.667 0.00 0.00 40.11 4.20
162 163 4.873129 CGGCCGATCAGGGTGTCG 62.873 72.222 24.07 0.00 41.48 4.35
168 169 4.473520 AACAGGCGGCCGATCAGG 62.474 66.667 33.48 17.62 44.97 3.86
169 170 2.859273 AAGAACAGGCGGCCGATCAG 62.859 60.000 33.48 18.99 0.00 2.90
170 171 2.954684 AAGAACAGGCGGCCGATCA 61.955 57.895 33.48 0.00 0.00 2.92
171 172 2.125106 AAGAACAGGCGGCCGATC 60.125 61.111 33.48 20.39 0.00 3.69
172 173 2.436646 CAAGAACAGGCGGCCGAT 60.437 61.111 33.48 14.48 0.00 4.18
173 174 4.697756 CCAAGAACAGGCGGCCGA 62.698 66.667 33.48 0.00 0.00 5.54
175 176 3.365265 CACCAAGAACAGGCGGCC 61.365 66.667 12.11 12.11 0.00 6.13
176 177 2.281484 TCACCAAGAACAGGCGGC 60.281 61.111 0.00 0.00 0.00 6.53
177 178 2.328099 GCTCACCAAGAACAGGCGG 61.328 63.158 0.00 0.00 0.00 6.13
178 179 1.165907 TTGCTCACCAAGAACAGGCG 61.166 55.000 0.00 0.00 0.00 5.52
179 180 2.719376 TTGCTCACCAAGAACAGGC 58.281 52.632 0.00 0.00 0.00 4.85
187 188 1.228245 GCCACCTCTTGCTCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
188 189 2.431683 GCCACCTCTTGCTCACCA 59.568 61.111 0.00 0.00 0.00 4.17
189 190 1.968540 GTGCCACCTCTTGCTCACC 60.969 63.158 0.00 0.00 0.00 4.02
190 191 1.227943 TGTGCCACCTCTTGCTCAC 60.228 57.895 0.00 0.00 0.00 3.51
191 192 1.227943 GTGTGCCACCTCTTGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
192 193 2.320587 CGTGTGCCACCTCTTGCTC 61.321 63.158 0.00 0.00 0.00 4.26
193 194 2.281070 CGTGTGCCACCTCTTGCT 60.281 61.111 0.00 0.00 0.00 3.91
194 195 2.280797 TCGTGTGCCACCTCTTGC 60.281 61.111 0.00 0.00 0.00 4.01
195 196 2.310233 CGTCGTGTGCCACCTCTTG 61.310 63.158 0.00 0.00 0.00 3.02
196 197 2.029073 CGTCGTGTGCCACCTCTT 59.971 61.111 0.00 0.00 0.00 2.85
197 198 2.910479 TCGTCGTGTGCCACCTCT 60.910 61.111 0.00 0.00 0.00 3.69
198 199 2.733593 GTCGTCGTGTGCCACCTC 60.734 66.667 0.00 0.00 0.00 3.85
199 200 2.377628 AATGTCGTCGTGTGCCACCT 62.378 55.000 0.00 0.00 0.00 4.00
200 201 1.959226 AATGTCGTCGTGTGCCACC 60.959 57.895 0.00 0.00 0.00 4.61
201 202 1.204062 CAATGTCGTCGTGTGCCAC 59.796 57.895 0.00 0.00 0.00 5.01
202 203 1.218875 GACAATGTCGTCGTGTGCCA 61.219 55.000 0.00 0.00 0.00 4.92
203 204 1.218875 TGACAATGTCGTCGTGTGCC 61.219 55.000 9.00 0.00 38.84 5.01
204 205 0.111266 GTGACAATGTCGTCGTGTGC 60.111 55.000 9.00 0.00 38.84 4.57
205 206 1.204792 TGTGACAATGTCGTCGTGTG 58.795 50.000 9.00 0.00 38.84 3.82
206 207 2.148916 ATGTGACAATGTCGTCGTGT 57.851 45.000 9.00 0.00 38.84 4.49
207 208 2.983803 TGTATGTGACAATGTCGTCGTG 59.016 45.455 9.00 0.00 38.84 4.35
208 209 2.984471 GTGTATGTGACAATGTCGTCGT 59.016 45.455 9.00 8.32 40.66 4.34
209 210 2.344441 GGTGTATGTGACAATGTCGTCG 59.656 50.000 9.00 0.00 40.66 5.12
210 211 3.585862 AGGTGTATGTGACAATGTCGTC 58.414 45.455 9.00 5.29 40.66 4.20
211 212 3.585862 GAGGTGTATGTGACAATGTCGT 58.414 45.455 9.00 0.25 40.66 4.34
212 213 2.930040 GGAGGTGTATGTGACAATGTCG 59.070 50.000 9.00 0.00 40.66 4.35
213 214 4.207891 AGGAGGTGTATGTGACAATGTC 57.792 45.455 6.41 6.41 40.66 3.06
214 215 4.640771 AAGGAGGTGTATGTGACAATGT 57.359 40.909 0.00 0.00 40.66 2.71
215 216 5.528690 CCATAAGGAGGTGTATGTGACAATG 59.471 44.000 0.00 0.00 37.05 2.82
216 217 5.684704 CCATAAGGAGGTGTATGTGACAAT 58.315 41.667 0.00 0.00 37.05 2.71
217 218 4.625324 GCCATAAGGAGGTGTATGTGACAA 60.625 45.833 0.00 0.00 37.05 3.18
218 219 3.118408 GCCATAAGGAGGTGTATGTGACA 60.118 47.826 0.00 0.00 36.89 3.58
239 240 2.350522 CTCACGCAATATCCTATGGGC 58.649 52.381 0.00 0.00 33.20 5.36
243 244 1.066858 CGGCCTCACGCAATATCCTAT 60.067 52.381 0.00 0.00 40.31 2.57
261 262 4.794248 TGATATTTTCGATTGTGAGCGG 57.206 40.909 0.00 0.00 34.94 5.52
262 263 8.864024 AGTATATGATATTTTCGATTGTGAGCG 58.136 33.333 0.00 0.00 35.66 5.03
314 315 4.672587 TGCATCCTGAAGGTAGTATCAC 57.327 45.455 0.00 0.00 36.34 3.06
323 324 6.236409 AGTTATGACATATGCATCCTGAAGG 58.764 40.000 0.19 0.00 0.00 3.46
324 325 7.308408 CCAAGTTATGACATATGCATCCTGAAG 60.308 40.741 0.19 0.00 0.00 3.02
329 330 7.607607 TGATACCAAGTTATGACATATGCATCC 59.392 37.037 0.19 8.05 0.00 3.51
330 331 8.552083 TGATACCAAGTTATGACATATGCATC 57.448 34.615 0.19 1.88 0.00 3.91
399 400 9.662947 CTATCATGGTGTGATATTGTGTCATAT 57.337 33.333 0.00 0.00 46.07 1.78
401 402 7.512130 ACTATCATGGTGTGATATTGTGTCAT 58.488 34.615 0.00 0.00 46.07 3.06
415 416 2.036992 GAGAGGCCTGACTATCATGGTG 59.963 54.545 12.00 0.00 0.00 4.17
417 418 2.607499 AGAGAGGCCTGACTATCATGG 58.393 52.381 12.00 0.00 31.30 3.66
425 426 1.819903 ACGAGTAAAGAGAGGCCTGAC 59.180 52.381 12.00 3.28 0.00 3.51
454 455 9.736023 CCAACTAGGCATTTTTATTAAGATGAC 57.264 33.333 0.00 0.00 34.79 3.06
460 472 8.535335 TGCATTCCAACTAGGCATTTTTATTAA 58.465 29.630 0.00 0.00 37.29 1.40
464 476 5.991933 TGCATTCCAACTAGGCATTTTTA 57.008 34.783 0.00 0.00 37.29 1.52
469 481 3.301794 TCATGCATTCCAACTAGGCAT 57.698 42.857 0.00 0.00 45.33 4.40
495 507 7.124298 GGCTAGTCATAATGGGACTATCATACA 59.876 40.741 3.05 0.00 44.42 2.29
496 508 7.343316 AGGCTAGTCATAATGGGACTATCATAC 59.657 40.741 0.00 0.00 44.42 2.39
504 519 3.733337 CACAGGCTAGTCATAATGGGAC 58.267 50.000 0.00 0.00 35.50 4.46
506 521 2.158769 TGCACAGGCTAGTCATAATGGG 60.159 50.000 0.00 0.00 41.91 4.00
517 532 2.946329 TCTTTTCGTTTTGCACAGGCTA 59.054 40.909 0.00 0.00 41.91 3.93
519 534 2.202295 TCTTTTCGTTTTGCACAGGC 57.798 45.000 0.00 0.00 41.68 4.85
555 576 6.803807 GCAGAAGTTCATATTTTCTGTGGAAC 59.196 38.462 5.50 0.00 45.93 3.62
562 583 6.626623 GCACCATGCAGAAGTTCATATTTTCT 60.627 38.462 5.50 0.00 44.26 2.52
564 585 5.413499 GCACCATGCAGAAGTTCATATTTT 58.587 37.500 5.50 0.00 44.26 1.82
587 608 1.136565 CATTTTACCCTGGCGCGTG 59.863 57.895 8.43 0.00 0.00 5.34
589 610 2.102161 GCATTTTACCCTGGCGCG 59.898 61.111 0.00 0.00 0.00 6.86
669 690 1.288419 TGGAAGTATGTGTGTGCGCG 61.288 55.000 0.00 0.00 0.00 6.86
671 692 1.460743 CTGTGGAAGTATGTGTGTGCG 59.539 52.381 0.00 0.00 0.00 5.34
672 693 2.494059 ACTGTGGAAGTATGTGTGTGC 58.506 47.619 0.00 0.00 37.36 4.57
673 694 3.303990 GCAACTGTGGAAGTATGTGTGTG 60.304 47.826 0.00 0.00 38.56 3.82
674 695 2.878406 GCAACTGTGGAAGTATGTGTGT 59.122 45.455 0.00 0.00 38.56 3.72
675 696 2.226437 GGCAACTGTGGAAGTATGTGTG 59.774 50.000 0.00 0.00 38.56 3.82
696 717 9.819267 AAGATTCCTTACGTCTAAAAGAATAGG 57.181 33.333 0.00 0.00 0.00 2.57
702 723 7.011482 CCATCCAAGATTCCTTACGTCTAAAAG 59.989 40.741 0.00 0.00 0.00 2.27
711 734 2.091885 TGGCCCATCCAAGATTCCTTAC 60.092 50.000 0.00 0.00 43.21 2.34
725 748 1.532316 GCCTGCATACATGGCCCAT 60.532 57.895 0.00 0.00 40.71 4.00
816 1097 2.062971 ATTCCTCCGCGGTAGTTCTA 57.937 50.000 27.15 1.93 0.00 2.10
857 1152 1.429930 TTGTGGAGGTAGCTTGGACA 58.570 50.000 0.00 0.00 0.00 4.02
884 1185 0.107703 TCTGGGGAGCACAAATAGCG 60.108 55.000 0.00 0.00 37.01 4.26
914 1215 1.199789 CAGAGCTCGCTATCTAGCCAG 59.800 57.143 8.37 1.84 46.34 4.85
937 1238 0.748005 GCTGTGGGTGTGTGTGACTT 60.748 55.000 0.00 0.00 0.00 3.01
1134 1442 1.941812 CTCTTCCTTGTGCGCGTTT 59.058 52.632 8.43 0.00 0.00 3.60
1249 1557 0.466922 GCCATGCCACCTGCTTCTAT 60.467 55.000 0.00 0.00 42.00 1.98
1250 1558 1.077501 GCCATGCCACCTGCTTCTA 60.078 57.895 0.00 0.00 42.00 2.10
1253 1561 2.993264 GTGCCATGCCACCTGCTT 60.993 61.111 0.00 0.00 42.00 3.91
1269 1577 2.031163 GTCCAGCTCCGCTTGTGT 59.969 61.111 0.00 0.00 36.40 3.72
1319 1655 3.304257 GCACCGCAAATAGGAGATTCATG 60.304 47.826 0.00 0.00 0.00 3.07
1322 1658 2.565841 AGCACCGCAAATAGGAGATTC 58.434 47.619 0.00 0.00 0.00 2.52
1323 1659 2.717639 AGCACCGCAAATAGGAGATT 57.282 45.000 0.00 0.00 0.00 2.40
1335 1671 0.675522 TTTGCCTTACCTAGCACCGC 60.676 55.000 0.00 0.00 39.10 5.68
1387 1725 0.464036 AGCGCCGATGAATCCACTTA 59.536 50.000 2.29 0.00 0.00 2.24
1477 1815 3.379372 CAGGAAAGTATCACATGCCAAGG 59.621 47.826 0.00 0.00 0.00 3.61
1512 1850 4.164604 ACCAAAACGCCCTGTCCTATATAA 59.835 41.667 0.00 0.00 0.00 0.98
1519 1857 3.039134 CACCAAAACGCCCTGTCC 58.961 61.111 0.00 0.00 0.00 4.02
1520 1858 2.335011 GCACCAAAACGCCCTGTC 59.665 61.111 0.00 0.00 0.00 3.51
1521 1859 3.223589 GGCACCAAAACGCCCTGT 61.224 61.111 0.00 0.00 42.82 4.00
1534 1872 2.827642 GCATCTGAGCCTGGGCAC 60.828 66.667 14.39 8.23 44.88 5.01
1535 1873 3.332385 TGCATCTGAGCCTGGGCA 61.332 61.111 14.39 0.00 44.88 5.36
1536 1874 2.827642 GTGCATCTGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
1537 1875 1.101635 CATGTGCATCTGAGCCTGGG 61.102 60.000 0.00 0.00 0.00 4.45
1538 1876 0.107361 TCATGTGCATCTGAGCCTGG 60.107 55.000 0.00 0.00 0.00 4.45
1539 1877 1.968704 ATCATGTGCATCTGAGCCTG 58.031 50.000 7.19 0.00 0.00 4.85
1540 1878 3.307550 GGATATCATGTGCATCTGAGCCT 60.308 47.826 4.83 0.00 0.00 4.58
1541 1879 3.008330 GGATATCATGTGCATCTGAGCC 58.992 50.000 4.83 5.22 0.00 4.70
1542 1880 3.685272 CAGGATATCATGTGCATCTGAGC 59.315 47.826 9.22 0.00 0.00 4.26
1543 1881 4.895961 ACAGGATATCATGTGCATCTGAG 58.104 43.478 21.44 0.00 39.61 3.35
1544 1882 4.968971 ACAGGATATCATGTGCATCTGA 57.031 40.909 21.44 3.94 39.61 3.27
1545 1883 4.151867 CGAACAGGATATCATGTGCATCTG 59.848 45.833 24.44 12.83 40.26 2.90
1546 1884 4.202295 ACGAACAGGATATCATGTGCATCT 60.202 41.667 24.44 9.86 40.26 2.90
1547 1885 4.060900 ACGAACAGGATATCATGTGCATC 58.939 43.478 24.44 16.79 40.26 3.91
1548 1886 4.077300 ACGAACAGGATATCATGTGCAT 57.923 40.909 24.44 10.10 40.26 3.96
1549 1887 3.541996 ACGAACAGGATATCATGTGCA 57.458 42.857 24.44 0.00 40.26 4.57
1550 1888 3.871006 TCAACGAACAGGATATCATGTGC 59.129 43.478 22.64 19.76 40.26 4.57
1551 1889 6.037500 ACAATCAACGAACAGGATATCATGTG 59.962 38.462 22.64 13.87 40.26 3.21
1552 1890 6.115446 ACAATCAACGAACAGGATATCATGT 58.885 36.000 16.96 16.96 43.27 3.21
1553 1891 6.609237 ACAATCAACGAACAGGATATCATG 57.391 37.500 15.56 15.56 0.00 3.07
1554 1892 6.599244 ACAACAATCAACGAACAGGATATCAT 59.401 34.615 4.83 0.00 0.00 2.45
1555 1893 5.937540 ACAACAATCAACGAACAGGATATCA 59.062 36.000 4.83 0.00 0.00 2.15
1556 1894 6.422776 ACAACAATCAACGAACAGGATATC 57.577 37.500 0.00 0.00 0.00 1.63
1557 1895 7.012327 CCATACAACAATCAACGAACAGGATAT 59.988 37.037 0.00 0.00 0.00 1.63
1558 1896 6.315144 CCATACAACAATCAACGAACAGGATA 59.685 38.462 0.00 0.00 0.00 2.59
1559 1897 5.123820 CCATACAACAATCAACGAACAGGAT 59.876 40.000 0.00 0.00 0.00 3.24
1560 1898 4.454161 CCATACAACAATCAACGAACAGGA 59.546 41.667 0.00 0.00 0.00 3.86
1561 1899 4.379394 CCCATACAACAATCAACGAACAGG 60.379 45.833 0.00 0.00 0.00 4.00
1562 1900 4.379394 CCCCATACAACAATCAACGAACAG 60.379 45.833 0.00 0.00 0.00 3.16
1563 1901 3.504134 CCCCATACAACAATCAACGAACA 59.496 43.478 0.00 0.00 0.00 3.18
1564 1902 3.754323 TCCCCATACAACAATCAACGAAC 59.246 43.478 0.00 0.00 0.00 3.95
1565 1903 4.022413 TCCCCATACAACAATCAACGAA 57.978 40.909 0.00 0.00 0.00 3.85
1566 1904 3.704800 TCCCCATACAACAATCAACGA 57.295 42.857 0.00 0.00 0.00 3.85
1567 1905 4.439974 CCAATCCCCATACAACAATCAACG 60.440 45.833 0.00 0.00 0.00 4.10
1568 1906 4.141959 CCCAATCCCCATACAACAATCAAC 60.142 45.833 0.00 0.00 0.00 3.18
1569 1907 4.029520 CCCAATCCCCATACAACAATCAA 58.970 43.478 0.00 0.00 0.00 2.57
1570 1908 3.629539 CCCCAATCCCCATACAACAATCA 60.630 47.826 0.00 0.00 0.00 2.57
1571 1909 2.965147 CCCCAATCCCCATACAACAATC 59.035 50.000 0.00 0.00 0.00 2.67
1572 1910 2.589664 TCCCCAATCCCCATACAACAAT 59.410 45.455 0.00 0.00 0.00 2.71
1573 1911 2.003830 TCCCCAATCCCCATACAACAA 58.996 47.619 0.00 0.00 0.00 2.83
1574 1912 1.687492 TCCCCAATCCCCATACAACA 58.313 50.000 0.00 0.00 0.00 3.33
1575 1913 2.838637 TTCCCCAATCCCCATACAAC 57.161 50.000 0.00 0.00 0.00 3.32
1576 1914 2.625617 GCTTTCCCCAATCCCCATACAA 60.626 50.000 0.00 0.00 0.00 2.41
1577 1915 1.063266 GCTTTCCCCAATCCCCATACA 60.063 52.381 0.00 0.00 0.00 2.29
1578 1916 1.217942 AGCTTTCCCCAATCCCCATAC 59.782 52.381 0.00 0.00 0.00 2.39
1579 1917 1.619298 AGCTTTCCCCAATCCCCATA 58.381 50.000 0.00 0.00 0.00 2.74
1580 1918 1.500736 CTAGCTTTCCCCAATCCCCAT 59.499 52.381 0.00 0.00 0.00 4.00
1581 1919 0.926293 CTAGCTTTCCCCAATCCCCA 59.074 55.000 0.00 0.00 0.00 4.96
1582 1920 0.927029 ACTAGCTTTCCCCAATCCCC 59.073 55.000 0.00 0.00 0.00 4.81
1583 1921 1.285078 ACACTAGCTTTCCCCAATCCC 59.715 52.381 0.00 0.00 0.00 3.85
1584 1922 2.026262 TGACACTAGCTTTCCCCAATCC 60.026 50.000 0.00 0.00 0.00 3.01
1585 1923 3.055094 TCTGACACTAGCTTTCCCCAATC 60.055 47.826 0.00 0.00 0.00 2.67
1586 1924 2.912956 TCTGACACTAGCTTTCCCCAAT 59.087 45.455 0.00 0.00 0.00 3.16
1587 1925 2.334977 TCTGACACTAGCTTTCCCCAA 58.665 47.619 0.00 0.00 0.00 4.12
1588 1926 2.024176 TCTGACACTAGCTTTCCCCA 57.976 50.000 0.00 0.00 0.00 4.96
1589 1927 2.420687 CCATCTGACACTAGCTTTCCCC 60.421 54.545 0.00 0.00 0.00 4.81
1590 1928 2.911484 CCATCTGACACTAGCTTTCCC 58.089 52.381 0.00 0.00 0.00 3.97
1591 1929 2.284190 GCCATCTGACACTAGCTTTCC 58.716 52.381 0.00 0.00 0.00 3.13
1592 1930 2.935201 CTGCCATCTGACACTAGCTTTC 59.065 50.000 0.00 0.00 0.00 2.62
1593 1931 2.355513 CCTGCCATCTGACACTAGCTTT 60.356 50.000 0.00 0.00 0.00 3.51
1594 1932 1.209019 CCTGCCATCTGACACTAGCTT 59.791 52.381 0.00 0.00 0.00 3.74
1595 1933 0.829333 CCTGCCATCTGACACTAGCT 59.171 55.000 0.00 0.00 0.00 3.32
1596 1934 0.539051 ACCTGCCATCTGACACTAGC 59.461 55.000 0.00 0.00 0.00 3.42
1597 1935 2.106566 AGACCTGCCATCTGACACTAG 58.893 52.381 0.00 0.00 0.00 2.57
1598 1936 1.827344 CAGACCTGCCATCTGACACTA 59.173 52.381 3.48 0.00 45.46 2.74
1599 1937 0.612229 CAGACCTGCCATCTGACACT 59.388 55.000 3.48 0.00 45.46 3.55
1600 1938 0.392193 CCAGACCTGCCATCTGACAC 60.392 60.000 9.82 0.00 45.46 3.67
1601 1939 0.837691 ACCAGACCTGCCATCTGACA 60.838 55.000 9.82 0.00 45.46 3.58
1602 1940 0.326264 AACCAGACCTGCCATCTGAC 59.674 55.000 9.82 0.00 45.46 3.51
1603 1941 0.615331 GAACCAGACCTGCCATCTGA 59.385 55.000 9.82 0.00 45.46 3.27
1604 1942 0.742281 CGAACCAGACCTGCCATCTG 60.742 60.000 2.72 2.72 42.79 2.90
1605 1943 1.194781 ACGAACCAGACCTGCCATCT 61.195 55.000 0.00 0.00 0.00 2.90
1606 1944 1.021390 CACGAACCAGACCTGCCATC 61.021 60.000 0.00 0.00 0.00 3.51
1607 1945 1.003355 CACGAACCAGACCTGCCAT 60.003 57.895 0.00 0.00 0.00 4.40
1608 1946 2.425592 CACGAACCAGACCTGCCA 59.574 61.111 0.00 0.00 0.00 4.92
1609 1947 2.358737 CCACGAACCAGACCTGCC 60.359 66.667 0.00 0.00 0.00 4.85
1610 1948 0.534203 TTTCCACGAACCAGACCTGC 60.534 55.000 0.00 0.00 0.00 4.85
1611 1949 1.961793 TTTTCCACGAACCAGACCTG 58.038 50.000 0.00 0.00 0.00 4.00
1612 1950 2.372172 AGATTTTCCACGAACCAGACCT 59.628 45.455 0.00 0.00 0.00 3.85
1613 1951 2.779506 AGATTTTCCACGAACCAGACC 58.220 47.619 0.00 0.00 0.00 3.85
1614 1952 4.817517 TCTAGATTTTCCACGAACCAGAC 58.182 43.478 0.00 0.00 0.00 3.51
1615 1953 5.677319 ATCTAGATTTTCCACGAACCAGA 57.323 39.130 0.00 0.00 0.00 3.86
1616 1954 6.338146 TGTATCTAGATTTTCCACGAACCAG 58.662 40.000 11.25 0.00 0.00 4.00
1617 1955 6.153851 TCTGTATCTAGATTTTCCACGAACCA 59.846 38.462 11.25 0.00 0.00 3.67
1618 1956 6.570692 TCTGTATCTAGATTTTCCACGAACC 58.429 40.000 11.25 0.00 0.00 3.62
1619 1957 8.649973 AATCTGTATCTAGATTTTCCACGAAC 57.350 34.615 11.25 0.01 43.08 3.95
1643 1981 9.151177 CCCCTTTTCCTACTAGTGTGTATATAA 57.849 37.037 5.39 0.00 0.00 0.98
1644 1982 7.234166 GCCCCTTTTCCTACTAGTGTGTATATA 59.766 40.741 5.39 0.00 0.00 0.86
1645 1983 6.042897 GCCCCTTTTCCTACTAGTGTGTATAT 59.957 42.308 5.39 0.00 0.00 0.86
1646 1984 5.364735 GCCCCTTTTCCTACTAGTGTGTATA 59.635 44.000 5.39 0.00 0.00 1.47
1647 1985 4.163649 GCCCCTTTTCCTACTAGTGTGTAT 59.836 45.833 5.39 0.00 0.00 2.29
1648 1986 3.516700 GCCCCTTTTCCTACTAGTGTGTA 59.483 47.826 5.39 0.00 0.00 2.90
1649 1987 2.305052 GCCCCTTTTCCTACTAGTGTGT 59.695 50.000 5.39 0.00 0.00 3.72
1821 2160 1.530655 CCAACCGGGACCAAAAGCT 60.531 57.895 6.32 0.00 40.01 3.74
1824 2163 2.128507 GCACCAACCGGGACCAAAA 61.129 57.895 6.32 0.00 41.15 2.44
1940 2279 0.550914 GTGGATGCCTATTGGTCCCA 59.449 55.000 1.28 1.06 35.27 4.37
2008 2360 3.639625 ATTAACCTCCCAAAACCCCAA 57.360 42.857 0.00 0.00 0.00 4.12
2046 2404 9.849166 CTCTCTATTAATTAGCTAGCTAACACC 57.151 37.037 33.80 0.00 40.76 4.16
2199 2557 3.971150 GAGGTGGTCGATATCACTTCTG 58.029 50.000 15.82 0.00 39.21 3.02
2229 2587 3.186702 TGTTGTTCGACCAATCACTCA 57.813 42.857 0.00 0.00 0.00 3.41
2233 2591 5.559991 CGAGAATTTGTTGTTCGACCAATCA 60.560 40.000 0.00 0.00 33.38 2.57
2251 2609 9.386010 GGTAGTGTCAGATAGATATACGAGAAT 57.614 37.037 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.