Multiple sequence alignment - TraesCS7D01G527500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G527500 chr7D 100.000 4256 0 0 1 4256 622544174 622548429 0.000000e+00 7860
1 TraesCS7D01G527500 chr7A 92.075 1489 61 21 1 1441 719473898 719472419 0.000000e+00 2043
2 TraesCS7D01G527500 chr7A 90.635 1196 84 18 3057 4233 719470698 719469512 0.000000e+00 1563
3 TraesCS7D01G527500 chr7A 83.926 647 59 23 2141 2781 719471710 719471103 1.030000e-160 577
4 TraesCS7D01G527500 chr7A 89.388 245 18 5 1594 1831 719472257 719472014 6.920000e-78 302
5 TraesCS7D01G527500 chr7A 94.783 115 6 0 2851 2965 719470993 719470879 3.380000e-41 180
6 TraesCS7D01G527500 chr7B 88.211 1705 141 28 180 1831 721066045 721064348 0.000000e+00 1980
7 TraesCS7D01G527500 chr7B 84.602 1130 110 28 3097 4193 721063225 721062127 0.000000e+00 1064
8 TraesCS7D01G527500 chr7B 83.673 343 24 15 2443 2781 721064039 721063725 1.160000e-75 294
9 TraesCS7D01G527500 chr7B 92.265 181 12 2 1830 2009 721064306 721064127 5.460000e-64 255
10 TraesCS7D01G527500 chr7B 91.011 178 11 2 4 176 721066274 721066097 7.110000e-58 235
11 TraesCS7D01G527500 chr7B 93.043 115 8 0 2851 2965 721063614 721063500 7.320000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G527500 chr7D 622544174 622548429 4255 False 7860.000000 7860 100.000000 1 4256 1 chr7D.!!$F1 4255
1 TraesCS7D01G527500 chr7A 719469512 719473898 4386 True 933.000000 2043 90.161400 1 4233 5 chr7A.!!$R1 4232
2 TraesCS7D01G527500 chr7B 721062127 721066274 4147 True 666.166667 1980 88.800833 4 4193 6 chr7B.!!$R1 4189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 183 0.318360 TTACTATCACCATCGCGCCG 60.318 55.0 0.00 0.00 0.00 6.46 F
952 1043 0.817654 CAGCACCACTGGTAGATCGA 59.182 55.0 0.00 0.00 43.19 3.59 F
2133 2325 0.103208 GAGTGACTATGGCCCAGTCG 59.897 60.0 22.77 2.37 44.44 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2306 0.103208 CGACTGGGCCATAGTCACTC 59.897 60.0 28.38 11.18 43.65 3.51 R
2223 2415 0.033208 ACCATTGGCAATCGTCCCAT 60.033 50.0 10.36 0.00 0.00 4.00 R
3652 4062 0.753867 TCTTACGGTTGAGTGGTGCA 59.246 50.0 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 182 1.269621 ACTTACTATCACCATCGCGCC 60.270 52.381 0.00 0.00 0.00 6.53
177 183 0.318360 TTACTATCACCATCGCGCCG 60.318 55.000 0.00 0.00 0.00 6.46
282 336 4.034048 GTCCATTATTAACTGGCACTGTCG 59.966 45.833 0.00 0.00 40.38 4.35
306 360 2.987149 AGAAATCTACACACGCAACTCG 59.013 45.455 0.00 0.00 45.38 4.18
662 727 5.480772 AGAGTAGAGAGACCTAGCTAGCTAG 59.519 48.000 35.39 35.39 44.07 3.42
711 776 2.833582 GCCAGGCAGCTGCATCAT 60.834 61.111 37.63 18.86 44.36 2.45
824 895 1.302033 AGCACAGCTAGCACACCAC 60.302 57.895 18.83 0.79 36.99 4.16
868 946 6.467677 GGAGCAAAAGCTGGATAGATATGTA 58.532 40.000 0.00 0.00 0.00 2.29
881 959 8.272173 TGGATAGATATGTAGATACGTGGATCA 58.728 37.037 0.00 0.00 0.00 2.92
952 1043 0.817654 CAGCACCACTGGTAGATCGA 59.182 55.000 0.00 0.00 43.19 3.59
1378 1476 5.479124 ACCCACATTCCTTCGTATATACC 57.521 43.478 7.30 0.00 0.00 2.73
1382 1480 7.093465 ACCCACATTCCTTCGTATATACCTATG 60.093 40.741 7.30 5.11 0.00 2.23
1391 1489 7.987458 CCTTCGTATATACCTATGGAATTGCAT 59.013 37.037 17.08 17.08 0.00 3.96
1477 1578 5.382618 ACAAGTTCAATGCTTGGATCTTC 57.617 39.130 9.42 0.00 45.38 2.87
1478 1579 5.075493 ACAAGTTCAATGCTTGGATCTTCT 58.925 37.500 9.42 0.00 45.38 2.85
1479 1580 6.240894 ACAAGTTCAATGCTTGGATCTTCTA 58.759 36.000 9.42 0.00 45.38 2.10
1480 1581 6.888632 ACAAGTTCAATGCTTGGATCTTCTAT 59.111 34.615 9.42 0.00 45.38 1.98
1481 1582 6.939132 AGTTCAATGCTTGGATCTTCTATG 57.061 37.500 0.00 0.00 0.00 2.23
1491 1592 6.540189 GCTTGGATCTTCTATGCTAGTTCAAA 59.460 38.462 0.00 0.00 0.00 2.69
1493 1594 9.118300 CTTGGATCTTCTATGCTAGTTCAAAAT 57.882 33.333 0.00 0.00 0.00 1.82
1499 1600 9.383519 TCTTCTATGCTAGTTCAAAATACCTTG 57.616 33.333 0.00 0.00 0.00 3.61
1525 1626 5.135383 ACTCAAGGTAAACCCAGGTAAAAC 58.865 41.667 0.00 0.00 36.42 2.43
1531 1632 5.831525 AGGTAAACCCAGGTAAAACTTTGAG 59.168 40.000 0.00 0.00 36.42 3.02
1532 1633 4.665833 AAACCCAGGTAAAACTTTGAGC 57.334 40.909 0.00 0.00 0.00 4.26
1535 1636 4.993028 ACCCAGGTAAAACTTTGAGCATA 58.007 39.130 0.00 0.00 0.00 3.14
1541 1642 8.686334 CCAGGTAAAACTTTGAGCATATTACAT 58.314 33.333 0.00 0.00 0.00 2.29
1561 1662 4.407296 ACATGAAGAGATTCACTAGTCCCC 59.593 45.833 0.00 0.00 33.23 4.81
1567 1668 6.056090 AGAGATTCACTAGTCCCCTTTTTC 57.944 41.667 0.00 0.00 0.00 2.29
1568 1669 5.045505 AGAGATTCACTAGTCCCCTTTTTCC 60.046 44.000 0.00 0.00 0.00 3.13
1587 1689 6.405278 TTTCCAAGAAAAAGGAGATTCACC 57.595 37.500 0.00 0.00 34.91 4.02
1599 1737 5.249420 AGGAGATTCACCAGCTAGAAAAAC 58.751 41.667 2.86 0.00 0.00 2.43
1600 1738 5.003804 GGAGATTCACCAGCTAGAAAAACA 58.996 41.667 0.00 0.00 0.00 2.83
1608 1746 6.037830 TCACCAGCTAGAAAAACAAACACTAC 59.962 38.462 0.00 0.00 0.00 2.73
1609 1747 6.038271 CACCAGCTAGAAAAACAAACACTACT 59.962 38.462 0.00 0.00 0.00 2.57
1611 1749 7.122204 ACCAGCTAGAAAAACAAACACTACTTT 59.878 33.333 0.00 0.00 0.00 2.66
1633 1772 8.999431 ACTTTAATCAGATTCGTAGCAAAAGAA 58.001 29.630 14.96 0.00 0.00 2.52
1651 1792 4.950205 AGAAAAGTGTCCGGAGAAACTA 57.050 40.909 3.06 0.00 39.86 2.24
1688 1829 6.902224 AAGTTTGGTCAATGTGTTAAAAGC 57.098 33.333 0.00 0.00 0.00 3.51
1692 1833 4.942852 TGGTCAATGTGTTAAAAGCCAAG 58.057 39.130 0.00 0.00 0.00 3.61
1727 1868 3.009363 TGGAATGTGGCATCTCTTTCTGA 59.991 43.478 0.00 0.00 0.00 3.27
1731 1872 2.902486 TGTGGCATCTCTTTCTGACTCT 59.098 45.455 0.00 0.00 0.00 3.24
1750 1891 4.948004 ACTCTCATCATGTTGCATTCATGT 59.052 37.500 22.70 13.02 42.03 3.21
1751 1892 5.066117 ACTCTCATCATGTTGCATTCATGTC 59.934 40.000 22.70 0.00 42.03 3.06
1756 1897 7.773149 TCATCATGTTGCATTCATGTCAATAA 58.227 30.769 22.70 10.14 42.03 1.40
1786 1927 8.546083 TGGTCAACATGGGCTAAAAATATATT 57.454 30.769 0.00 0.00 0.00 1.28
1791 1936 9.696917 CAACATGGGCTAAAAATATATTTCTCC 57.303 33.333 11.08 9.42 0.00 3.71
1824 1970 3.619038 GTGCTCTGCTTCACCTAATACAC 59.381 47.826 0.00 0.00 0.00 2.90
1886 2076 6.349300 ACTCTAGCAAAAGAACAACAGAAGA 58.651 36.000 0.00 0.00 0.00 2.87
1948 2140 4.067896 TCTTGGAAGTTTGTGATCAGCTC 58.932 43.478 0.00 0.00 0.00 4.09
1952 2144 3.686726 GGAAGTTTGTGATCAGCTCGATT 59.313 43.478 0.00 0.00 33.17 3.34
1953 2145 4.201763 GGAAGTTTGTGATCAGCTCGATTC 60.202 45.833 0.00 0.00 33.17 2.52
1967 2159 5.175308 CAGCTCGATTCAGACATCAATACAG 59.825 44.000 0.00 0.00 0.00 2.74
1989 2181 7.231467 ACAGAAATATCCAGGTTGTTACAAGT 58.769 34.615 0.00 0.00 0.00 3.16
2044 2236 4.036262 GTCATTTGTAGTTTGTGACCAGCA 59.964 41.667 0.00 0.00 34.58 4.41
2066 2258 4.379498 CACACAACAAATCAGCAATACACG 59.621 41.667 0.00 0.00 0.00 4.49
2074 2266 5.845985 AATCAGCAATACACGAATATCCG 57.154 39.130 0.00 0.00 0.00 4.18
2075 2267 4.316205 TCAGCAATACACGAATATCCGT 57.684 40.909 0.00 0.00 44.43 4.69
2076 2268 5.441709 TCAGCAATACACGAATATCCGTA 57.558 39.130 0.00 0.00 41.29 4.02
2089 2281 9.401873 CACGAATATCCGTATTGTTACAAGATA 57.598 33.333 3.63 5.71 41.29 1.98
2114 2306 8.567285 AATTGTAACTAAGATTTGAGGGAGTG 57.433 34.615 0.00 0.00 0.00 3.51
2115 2307 6.928348 TGTAACTAAGATTTGAGGGAGTGA 57.072 37.500 0.00 0.00 0.00 3.41
2116 2308 6.936279 TGTAACTAAGATTTGAGGGAGTGAG 58.064 40.000 0.00 0.00 0.00 3.51
2117 2309 6.497259 TGTAACTAAGATTTGAGGGAGTGAGT 59.503 38.462 0.00 0.00 0.00 3.41
2118 2310 5.413309 ACTAAGATTTGAGGGAGTGAGTG 57.587 43.478 0.00 0.00 0.00 3.51
2119 2311 5.087323 ACTAAGATTTGAGGGAGTGAGTGA 58.913 41.667 0.00 0.00 0.00 3.41
2120 2312 3.971245 AGATTTGAGGGAGTGAGTGAC 57.029 47.619 0.00 0.00 0.00 3.67
2121 2313 3.515562 AGATTTGAGGGAGTGAGTGACT 58.484 45.455 0.00 0.00 37.76 3.41
2122 2314 4.678256 AGATTTGAGGGAGTGAGTGACTA 58.322 43.478 0.00 0.00 33.83 2.59
2123 2315 5.276440 AGATTTGAGGGAGTGAGTGACTAT 58.724 41.667 0.00 0.00 33.83 2.12
2124 2316 4.808414 TTTGAGGGAGTGAGTGACTATG 57.192 45.455 0.00 0.00 33.83 2.23
2125 2317 2.739943 TGAGGGAGTGAGTGACTATGG 58.260 52.381 0.00 0.00 33.83 2.74
2126 2318 1.410882 GAGGGAGTGAGTGACTATGGC 59.589 57.143 0.00 0.00 33.83 4.40
2127 2319 0.466124 GGGAGTGAGTGACTATGGCC 59.534 60.000 0.00 0.00 33.83 5.36
2128 2320 0.466124 GGAGTGAGTGACTATGGCCC 59.534 60.000 0.00 0.00 33.83 5.80
2129 2321 1.195115 GAGTGAGTGACTATGGCCCA 58.805 55.000 0.00 0.00 33.83 5.36
2130 2322 1.137872 GAGTGAGTGACTATGGCCCAG 59.862 57.143 0.00 0.00 33.83 4.45
2131 2323 0.905357 GTGAGTGACTATGGCCCAGT 59.095 55.000 6.81 6.81 0.00 4.00
2132 2324 1.134670 GTGAGTGACTATGGCCCAGTC 60.135 57.143 22.01 22.01 42.31 3.51
2133 2325 0.103208 GAGTGACTATGGCCCAGTCG 59.897 60.000 22.77 2.37 44.44 4.18
2134 2326 0.324368 AGTGACTATGGCCCAGTCGA 60.324 55.000 22.77 13.22 44.44 4.20
2135 2327 0.179108 GTGACTATGGCCCAGTCGAC 60.179 60.000 22.77 7.70 44.44 4.20
2136 2328 0.324368 TGACTATGGCCCAGTCGACT 60.324 55.000 22.77 13.58 44.44 4.18
2137 2329 0.824759 GACTATGGCCCAGTCGACTT 59.175 55.000 17.26 2.43 33.62 3.01
2138 2330 2.029623 GACTATGGCCCAGTCGACTTA 58.970 52.381 17.26 3.65 33.62 2.24
2139 2331 1.755380 ACTATGGCCCAGTCGACTTAC 59.245 52.381 17.26 8.03 0.00 2.34
2148 2340 4.673441 CCCAGTCGACTTACAGATAGTTG 58.327 47.826 17.26 0.31 0.00 3.16
2158 2350 7.271653 CGACTTACAGATAGTTGTTTCTCTGTC 59.728 40.741 7.28 0.00 43.60 3.51
2166 2358 5.023533 AGTTGTTTCTCTGTCAAGTGCTA 57.976 39.130 0.00 0.00 0.00 3.49
2179 2371 7.124298 TCTGTCAAGTGCTAATAGTAGTTGGAT 59.876 37.037 20.47 0.00 40.30 3.41
2181 2373 8.755028 TGTCAAGTGCTAATAGTAGTTGGATAA 58.245 33.333 20.47 4.24 40.30 1.75
2207 2399 7.907214 AAATTCTCATCTTTTACACTAGCGT 57.093 32.000 0.00 0.00 0.00 5.07
2214 2406 6.531594 TCATCTTTTACACTAGCGTGAATCAG 59.468 38.462 0.00 0.00 43.97 2.90
2215 2407 5.779922 TCTTTTACACTAGCGTGAATCAGT 58.220 37.500 0.00 0.00 43.97 3.41
2236 2429 0.179000 AGTCTGATGGGACGATTGCC 59.821 55.000 0.00 0.00 40.76 4.52
2268 2461 7.013846 TGACATAAGAAAATGTTTTTCCTCGGT 59.986 33.333 8.65 4.13 40.17 4.69
2270 2463 4.483476 AGAAAATGTTTTTCCTCGGTCG 57.517 40.909 8.65 0.00 0.00 4.79
2272 2465 3.891056 AAATGTTTTTCCTCGGTCGAC 57.109 42.857 7.13 7.13 0.00 4.20
2273 2466 1.804601 ATGTTTTTCCTCGGTCGACC 58.195 50.000 25.28 25.28 0.00 4.79
2294 2487 3.187637 CCGAGAAATAGCAAAACCGAACA 59.812 43.478 0.00 0.00 0.00 3.18
2297 2490 5.616866 CGAGAAATAGCAAAACCGAACATGT 60.617 40.000 0.00 0.00 0.00 3.21
2301 2494 3.282831 AGCAAAACCGAACATGTAAGC 57.717 42.857 0.00 0.00 0.00 3.09
2305 2498 4.143347 GCAAAACCGAACATGTAAGCATTG 60.143 41.667 0.00 2.50 31.99 2.82
2314 2507 1.544724 TGTAAGCATTGCTGGTTCCC 58.455 50.000 12.82 0.00 41.95 3.97
2315 2508 1.075374 TGTAAGCATTGCTGGTTCCCT 59.925 47.619 12.82 0.00 41.95 4.20
2321 2514 2.094545 GCATTGCTGGTTCCCTGTTAAG 60.095 50.000 0.16 0.00 0.00 1.85
2326 2519 4.282496 TGCTGGTTCCCTGTTAAGAAAAA 58.718 39.130 0.00 0.00 0.00 1.94
2346 2539 6.827586 AAAAAGTATCGCTGGTTATTTGGA 57.172 33.333 0.00 0.00 0.00 3.53
2348 2541 3.467803 AGTATCGCTGGTTATTTGGAGC 58.532 45.455 0.00 0.00 0.00 4.70
2355 2548 4.260784 CGCTGGTTATTTGGAGCTTATGAC 60.261 45.833 0.00 0.00 0.00 3.06
2356 2549 4.036852 GCTGGTTATTTGGAGCTTATGACC 59.963 45.833 0.00 0.00 0.00 4.02
2370 2563 0.254178 ATGACCAGCAGGATGGACAC 59.746 55.000 11.05 2.39 45.49 3.67
2374 2567 1.298993 CAGCAGGATGGACACAGCT 59.701 57.895 0.00 0.00 35.86 4.24
2375 2568 0.538584 CAGCAGGATGGACACAGCTA 59.461 55.000 0.00 0.00 35.86 3.32
2376 2569 1.065926 CAGCAGGATGGACACAGCTAA 60.066 52.381 0.00 0.00 35.86 3.09
2377 2570 1.209019 AGCAGGATGGACACAGCTAAG 59.791 52.381 0.00 0.00 35.86 2.18
2378 2571 1.661341 CAGGATGGACACAGCTAAGC 58.339 55.000 0.00 0.00 32.48 3.09
2379 2572 1.209019 CAGGATGGACACAGCTAAGCT 59.791 52.381 0.00 0.00 40.77 3.74
2380 2573 2.432146 CAGGATGGACACAGCTAAGCTA 59.568 50.000 0.00 0.00 36.40 3.32
2381 2574 3.070734 CAGGATGGACACAGCTAAGCTAT 59.929 47.826 0.00 0.00 36.40 2.97
2386 2579 2.289133 GGACACAGCTAAGCTATAGGCC 60.289 54.545 0.00 0.00 43.05 5.19
2426 2621 4.081917 TGGACTTTCAAACCCACTTGTTTC 60.082 41.667 0.00 0.00 36.33 2.78
2462 2657 7.202526 TGTTAGTTGAAAAGCATCTTCTTTGG 58.797 34.615 0.00 0.00 36.49 3.28
2533 2730 9.722317 AAAAATCCATAACCCACTATATTCCAA 57.278 29.630 0.00 0.00 0.00 3.53
2537 2734 6.102615 TCCATAACCCACTATATTCCAAAGCT 59.897 38.462 0.00 0.00 0.00 3.74
2538 2735 7.293771 TCCATAACCCACTATATTCCAAAGCTA 59.706 37.037 0.00 0.00 0.00 3.32
2539 2736 7.607991 CCATAACCCACTATATTCCAAAGCTAG 59.392 40.741 0.00 0.00 0.00 3.42
2540 2737 4.974399 ACCCACTATATTCCAAAGCTAGC 58.026 43.478 6.62 6.62 0.00 3.42
2541 2738 4.412199 ACCCACTATATTCCAAAGCTAGCA 59.588 41.667 18.83 0.00 0.00 3.49
2542 2739 4.757149 CCCACTATATTCCAAAGCTAGCAC 59.243 45.833 18.83 0.00 0.00 4.40
2543 2740 5.368145 CCACTATATTCCAAAGCTAGCACA 58.632 41.667 18.83 0.00 0.00 4.57
2544 2741 5.468072 CCACTATATTCCAAAGCTAGCACAG 59.532 44.000 18.83 5.40 0.00 3.66
2545 2742 6.283694 CACTATATTCCAAAGCTAGCACAGA 58.716 40.000 18.83 5.06 0.00 3.41
2556 2753 1.723542 CTAGCACAGAACAGTTCAGCG 59.276 52.381 15.85 2.75 32.12 5.18
2575 2773 1.739035 CGGCACATCACCGTAGACATT 60.739 52.381 0.00 0.00 45.70 2.71
2667 2865 4.513318 TGTGCTCATGATTACGTTGACAAA 59.487 37.500 0.00 0.00 0.00 2.83
2669 2867 5.912396 GTGCTCATGATTACGTTGACAAAAA 59.088 36.000 0.00 0.00 0.00 1.94
2678 2876 6.804534 TTACGTTGACAAAAATTTGCAGAG 57.195 33.333 5.82 5.96 41.79 3.35
2679 2877 4.111916 ACGTTGACAAAAATTTGCAGAGG 58.888 39.130 5.82 1.37 41.79 3.69
2717 2915 7.779326 TCAAATGAACCAATAATGCTCTATGGA 59.221 33.333 0.00 0.00 0.00 3.41
2724 2922 7.520798 ACCAATAATGCTCTATGGATTTCTCA 58.479 34.615 0.00 0.00 37.82 3.27
2728 2926 9.584008 AATAATGCTCTATGGATTTCTCACATT 57.416 29.630 0.00 0.00 37.82 2.71
2729 2927 6.879276 ATGCTCTATGGATTTCTCACATTG 57.121 37.500 0.00 0.00 0.00 2.82
2730 2928 4.577693 TGCTCTATGGATTTCTCACATTGC 59.422 41.667 0.00 0.00 0.00 3.56
2731 2929 4.577693 GCTCTATGGATTTCTCACATTGCA 59.422 41.667 0.00 0.00 0.00 4.08
2732 2930 5.066893 GCTCTATGGATTTCTCACATTGCAA 59.933 40.000 0.00 0.00 0.00 4.08
2733 2931 6.441093 TCTATGGATTTCTCACATTGCAAC 57.559 37.500 0.00 0.00 0.00 4.17
2734 2932 6.182627 TCTATGGATTTCTCACATTGCAACT 58.817 36.000 0.00 0.00 0.00 3.16
2735 2933 5.733620 ATGGATTTCTCACATTGCAACTT 57.266 34.783 0.00 0.00 0.00 2.66
2736 2934 5.534207 TGGATTTCTCACATTGCAACTTT 57.466 34.783 0.00 0.00 0.00 2.66
2737 2935 5.291178 TGGATTTCTCACATTGCAACTTTG 58.709 37.500 0.00 0.00 0.00 2.77
2781 2979 0.389817 TAGCTAGTGCGGCACAAGTG 60.390 55.000 32.29 19.54 45.42 3.16
2782 2980 1.961277 GCTAGTGCGGCACAAGTGT 60.961 57.895 32.29 15.55 36.74 3.55
2783 2981 0.669318 GCTAGTGCGGCACAAGTGTA 60.669 55.000 32.29 15.84 36.74 2.90
2784 2982 2.007049 GCTAGTGCGGCACAAGTGTAT 61.007 52.381 32.29 14.14 36.74 2.29
2785 2983 1.660607 CTAGTGCGGCACAAGTGTATG 59.339 52.381 32.29 10.63 36.74 2.39
2809 3007 3.635331 CAGTTGTGCACCTGAAATTGAG 58.365 45.455 15.69 0.00 0.00 3.02
2810 3008 3.316029 CAGTTGTGCACCTGAAATTGAGA 59.684 43.478 15.69 0.00 0.00 3.27
2811 3009 3.953612 AGTTGTGCACCTGAAATTGAGAA 59.046 39.130 15.69 0.00 0.00 2.87
2812 3010 3.988379 TGTGCACCTGAAATTGAGAAC 57.012 42.857 15.69 0.00 0.00 3.01
2813 3011 3.286353 TGTGCACCTGAAATTGAGAACA 58.714 40.909 15.69 0.00 0.00 3.18
2814 3012 3.066621 TGTGCACCTGAAATTGAGAACAC 59.933 43.478 15.69 0.00 0.00 3.32
2815 3013 2.290367 TGCACCTGAAATTGAGAACACG 59.710 45.455 0.00 0.00 0.00 4.49
2819 3017 4.035091 CACCTGAAATTGAGAACACGTTGA 59.965 41.667 0.00 0.00 0.00 3.18
2820 3018 4.821805 ACCTGAAATTGAGAACACGTTGAT 59.178 37.500 0.00 0.00 0.00 2.57
2822 3020 5.180117 CCTGAAATTGAGAACACGTTGATCT 59.820 40.000 0.00 0.00 31.87 2.75
2823 3021 5.989249 TGAAATTGAGAACACGTTGATCTG 58.011 37.500 0.00 0.00 29.19 2.90
2824 3022 4.410492 AATTGAGAACACGTTGATCTGC 57.590 40.909 0.00 0.00 29.19 4.26
2826 3024 1.269569 TGAGAACACGTTGATCTGCGT 60.270 47.619 8.83 8.83 42.45 5.24
2830 3028 3.244105 ACGTTGATCTGCGTGCAC 58.756 55.556 6.82 6.82 40.03 4.57
2831 3029 1.300931 ACGTTGATCTGCGTGCACT 60.301 52.632 16.19 0.00 40.03 4.40
2832 3030 0.038618 ACGTTGATCTGCGTGCACTA 60.039 50.000 16.19 2.72 40.03 2.74
2833 3031 0.642291 CGTTGATCTGCGTGCACTAG 59.358 55.000 16.19 13.02 0.00 2.57
2834 3032 1.732405 CGTTGATCTGCGTGCACTAGA 60.732 52.381 16.19 17.83 0.00 2.43
2835 3033 2.337583 GTTGATCTGCGTGCACTAGAA 58.662 47.619 20.06 6.54 0.00 2.10
2839 3037 3.371898 TGATCTGCGTGCACTAGAAATTG 59.628 43.478 20.06 2.75 0.00 2.32
2840 3038 3.038788 TCTGCGTGCACTAGAAATTGA 57.961 42.857 16.19 0.00 0.00 2.57
2841 3039 3.599343 TCTGCGTGCACTAGAAATTGAT 58.401 40.909 16.19 0.00 0.00 2.57
2842 3040 4.002982 TCTGCGTGCACTAGAAATTGATT 58.997 39.130 16.19 0.00 0.00 2.57
2843 3041 4.093408 TCTGCGTGCACTAGAAATTGATTC 59.907 41.667 16.19 0.00 38.39 2.52
2844 3042 3.181521 TGCGTGCACTAGAAATTGATTCG 60.182 43.478 16.19 0.00 43.15 3.34
2845 3043 3.181520 GCGTGCACTAGAAATTGATTCGT 60.182 43.478 16.19 0.00 43.15 3.85
2846 3044 4.669197 GCGTGCACTAGAAATTGATTCGTT 60.669 41.667 16.19 0.00 43.15 3.85
2848 3046 5.281376 CGTGCACTAGAAATTGATTCGTTTG 59.719 40.000 16.19 0.00 43.15 2.93
2873 3120 2.569059 CAGGCATATGTGGAGGAACTG 58.431 52.381 4.29 0.00 41.55 3.16
2888 3135 0.977395 AACTGGAGAAGGAGGTTCGG 59.023 55.000 0.00 0.00 40.49 4.30
2891 3138 2.509561 GAGAAGGAGGTTCGGCGC 60.510 66.667 0.00 0.00 40.49 6.53
2921 3168 3.470709 TGACAACCTCAAGCTGAAGAAG 58.529 45.455 0.00 0.00 0.00 2.85
2940 3187 1.298859 GCAGTGCAAAGAGGTACCCG 61.299 60.000 11.09 0.00 0.00 5.28
2948 3195 2.125512 GAGGTACCCGCACAGCAG 60.126 66.667 8.74 0.00 0.00 4.24
2966 3273 7.273381 GCACAGCAGTTAACCAATTATTACTTG 59.727 37.037 0.88 0.00 0.00 3.16
2969 3276 9.507280 CAGCAGTTAACCAATTATTACTTGATG 57.493 33.333 0.88 0.00 0.00 3.07
2982 3289 3.482156 ACTTGATGTCTTGACACTGCT 57.518 42.857 5.53 0.00 0.00 4.24
2986 3293 5.822519 ACTTGATGTCTTGACACTGCTAAAA 59.177 36.000 5.53 0.00 0.00 1.52
3039 3347 2.129607 CACCAATGCAACTCAAAGTGC 58.870 47.619 0.00 0.00 0.00 4.40
3041 3349 2.431782 ACCAATGCAACTCAAAGTGCTT 59.568 40.909 0.00 0.00 0.00 3.91
3042 3350 3.636300 ACCAATGCAACTCAAAGTGCTTA 59.364 39.130 0.00 0.00 0.00 3.09
3043 3351 4.232221 CCAATGCAACTCAAAGTGCTTAG 58.768 43.478 0.00 0.00 0.00 2.18
3044 3352 4.022935 CCAATGCAACTCAAAGTGCTTAGA 60.023 41.667 0.00 0.00 0.00 2.10
3045 3353 5.152097 CAATGCAACTCAAAGTGCTTAGAG 58.848 41.667 0.00 0.00 0.00 2.43
3046 3354 4.071961 TGCAACTCAAAGTGCTTAGAGA 57.928 40.909 0.00 0.00 32.59 3.10
3049 3387 5.639506 TGCAACTCAAAGTGCTTAGAGATAC 59.360 40.000 0.00 0.00 32.59 2.24
3052 3390 7.545965 GCAACTCAAAGTGCTTAGAGATACTTA 59.454 37.037 0.00 0.00 33.37 2.24
3080 3418 6.624423 AGTTTTCCATAACATCTGCAACATC 58.376 36.000 0.00 0.00 0.00 3.06
3087 3425 7.012610 TCCATAACATCTGCAACATCTTACATG 59.987 37.037 0.00 0.00 0.00 3.21
3118 3521 9.955208 TGCTTCTTCAATTAGCAACATATAATG 57.045 29.630 0.00 0.00 41.57 1.90
3122 3525 9.851686 TCTTCAATTAGCAACATATAATGTCCT 57.148 29.630 0.00 0.00 44.07 3.85
3164 3567 6.086222 CCACACTTAATTGTCCTTTGATTCG 58.914 40.000 0.00 0.00 0.00 3.34
3169 3572 7.749126 CACTTAATTGTCCTTTGATTCGGTAAC 59.251 37.037 0.00 0.00 0.00 2.50
3246 3649 2.579201 CGGCGAACCTCATCCACT 59.421 61.111 0.00 0.00 0.00 4.00
3281 3684 4.379243 CAGACGGCCCAAGACGCT 62.379 66.667 0.00 0.00 0.00 5.07
3287 3690 3.426568 GCCCAAGACGCTGAGCAC 61.427 66.667 4.88 0.00 0.00 4.40
3289 3692 2.031516 CCCAAGACGCTGAGCACAG 61.032 63.158 4.88 6.80 45.91 3.66
3354 3757 3.462982 TGTGCACATTTCGTCTACAGTT 58.537 40.909 17.42 0.00 0.00 3.16
3355 3758 3.493129 TGTGCACATTTCGTCTACAGTTC 59.507 43.478 17.42 0.00 0.00 3.01
3356 3759 3.493129 GTGCACATTTCGTCTACAGTTCA 59.507 43.478 13.17 0.00 0.00 3.18
3358 3761 5.347635 GTGCACATTTCGTCTACAGTTCATA 59.652 40.000 13.17 0.00 0.00 2.15
3384 3793 9.688091 ATGTATACCTATGTACAAGATCGATCT 57.312 33.333 22.32 22.32 36.18 2.75
3399 3808 9.175060 CAAGATCGATCTAAACCTATATATGCG 57.825 37.037 27.52 0.00 35.76 4.73
3400 3809 8.453238 AGATCGATCTAAACCTATATATGCGT 57.547 34.615 26.27 0.00 34.85 5.24
3402 3811 8.858003 ATCGATCTAAACCTATATATGCGTTG 57.142 34.615 0.00 0.00 0.00 4.10
3404 3813 7.121611 TCGATCTAAACCTATATATGCGTTGGA 59.878 37.037 0.00 1.64 0.00 3.53
3405 3814 7.921214 CGATCTAAACCTATATATGCGTTGGAT 59.079 37.037 0.00 5.65 0.00 3.41
3407 3816 8.362464 TCTAAACCTATATATGCGTTGGATCT 57.638 34.615 0.00 0.00 0.00 2.75
3411 3820 7.907214 ACCTATATATGCGTTGGATCTTTTC 57.093 36.000 0.00 0.00 0.00 2.29
3414 3823 2.927553 ATGCGTTGGATCTTTTCTGC 57.072 45.000 0.00 0.00 0.00 4.26
3415 3824 1.603456 TGCGTTGGATCTTTTCTGCA 58.397 45.000 0.00 0.00 0.00 4.41
3417 3826 2.557924 TGCGTTGGATCTTTTCTGCATT 59.442 40.909 0.00 0.00 0.00 3.56
3425 3834 6.475504 TGGATCTTTTCTGCATTTGTCTCTA 58.524 36.000 0.00 0.00 0.00 2.43
3426 3835 6.596888 TGGATCTTTTCTGCATTTGTCTCTAG 59.403 38.462 0.00 0.00 0.00 2.43
3430 3839 8.092521 TCTTTTCTGCATTTGTCTCTAGAAAG 57.907 34.615 0.00 0.00 36.08 2.62
3465 3875 4.517832 AGTTTCGTTGGTGGAGAATTAACC 59.482 41.667 0.00 0.00 34.38 2.85
3475 3885 6.183360 TGGTGGAGAATTAACCTTTTGTGTTC 60.183 38.462 0.00 0.00 34.90 3.18
3490 3900 8.190784 CCTTTTGTGTTCTTGTTCAGATTAACT 58.809 33.333 0.00 0.00 0.00 2.24
3566 3976 2.362077 AGACAGCAACCACCATTTCAAC 59.638 45.455 0.00 0.00 0.00 3.18
3607 4017 7.512058 AGATGGTTAGGACATGATGATAAGTCT 59.488 37.037 0.00 0.00 0.00 3.24
3666 4081 0.238289 GTTGATGCACCACTCAACCG 59.762 55.000 16.62 0.00 43.42 4.44
3697 4112 0.168568 GAGTTCTCCCTCGTCACGTC 59.831 60.000 0.00 0.00 0.00 4.34
3699 4114 0.597072 GTTCTCCCTCGTCACGTCTT 59.403 55.000 0.00 0.00 0.00 3.01
3700 4115 0.879765 TTCTCCCTCGTCACGTCTTC 59.120 55.000 0.00 0.00 0.00 2.87
3730 4154 6.909550 TTTTATTGCTCTTTTGGCCTCTTA 57.090 33.333 3.32 0.00 0.00 2.10
3735 4159 5.806654 TGCTCTTTTGGCCTCTTAATTTT 57.193 34.783 3.32 0.00 0.00 1.82
3736 4160 5.783111 TGCTCTTTTGGCCTCTTAATTTTC 58.217 37.500 3.32 0.00 0.00 2.29
3739 4163 7.232534 TGCTCTTTTGGCCTCTTAATTTTCTTA 59.767 33.333 3.32 0.00 0.00 2.10
3740 4164 7.542477 GCTCTTTTGGCCTCTTAATTTTCTTAC 59.458 37.037 3.32 0.00 0.00 2.34
3818 4244 1.803334 GTCACCGGACAACTGCATTA 58.197 50.000 9.46 0.00 43.73 1.90
3884 4310 5.909621 ACAATAAGCGTAGGTCTGTTCTA 57.090 39.130 0.00 0.00 37.06 2.10
3926 4352 0.038892 GTGGGTGCAAAGTGCTCATG 60.039 55.000 1.43 0.00 45.31 3.07
4107 4535 3.823873 ACCTCATTCGGTATTGTTTTGCA 59.176 39.130 0.00 0.00 34.94 4.08
4109 4537 4.155826 CCTCATTCGGTATTGTTTTGCAGA 59.844 41.667 0.00 0.00 0.00 4.26
4112 4540 4.902443 TTCGGTATTGTTTTGCAGACAA 57.098 36.364 16.80 16.80 40.86 3.18
4117 4554 6.758886 TCGGTATTGTTTTGCAGACAATTTTT 59.241 30.769 25.74 12.29 43.23 1.94
4148 4585 0.533308 TGGCACAGAACAACGGGTAC 60.533 55.000 0.00 0.00 0.00 3.34
4233 4670 0.888619 AGAAATGGCGACGACTGAGA 59.111 50.000 0.65 0.00 0.00 3.27
4234 4671 1.135257 AGAAATGGCGACGACTGAGAG 60.135 52.381 0.65 0.00 0.00 3.20
4235 4672 0.737715 AAATGGCGACGACTGAGAGC 60.738 55.000 0.65 0.00 0.00 4.09
4236 4673 1.877576 AATGGCGACGACTGAGAGCA 61.878 55.000 0.65 0.00 0.00 4.26
4237 4674 1.670949 ATGGCGACGACTGAGAGCAT 61.671 55.000 0.65 0.00 0.00 3.79
4238 4675 1.587613 GGCGACGACTGAGAGCATC 60.588 63.158 0.00 0.00 0.00 3.91
4249 4686 3.934684 GAGCATCTTCAGCCGCGC 61.935 66.667 0.00 0.00 0.00 6.86
4252 4689 4.845580 CATCTTCAGCCGCGCCCT 62.846 66.667 0.00 0.00 0.00 5.19
4253 4690 4.537433 ATCTTCAGCCGCGCCCTC 62.537 66.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.034059 AACCTCGGACTGACAGCAAG 59.966 55.000 1.25 0.00 0.00 4.01
183 237 2.027024 GCGACCGGCGTATGATGA 59.973 61.111 17.38 0.00 43.41 2.92
282 336 2.380084 TGCGTGTGTAGATTTCTCCC 57.620 50.000 0.00 0.00 0.00 4.30
306 360 1.658095 GAGCTTTGTGAGATCGACAGC 59.342 52.381 0.00 3.35 30.03 4.40
358 413 4.935808 CCCTGTGTAGTTAACAGTTGATCC 59.064 45.833 8.61 0.00 42.90 3.36
572 627 5.571285 ACTCCTACTGTAGTGATCTCAACA 58.429 41.667 13.42 0.00 0.00 3.33
619 674 5.540808 ACTCTCTAGGACTAGGACTCCTTA 58.459 45.833 1.94 0.00 39.09 2.69
621 676 4.016962 ACTCTCTAGGACTAGGACTCCT 57.983 50.000 2.31 2.31 41.36 3.69
634 689 6.350277 GCTAGCTAGGTCTCTCTACTCTCTAG 60.350 50.000 22.10 0.00 0.00 2.43
662 727 5.932303 TCGAATGCCTACCTGATTAATTAGC 59.068 40.000 1.71 0.00 0.00 3.09
663 728 6.929049 TGTCGAATGCCTACCTGATTAATTAG 59.071 38.462 0.25 0.25 0.00 1.73
664 729 6.822442 TGTCGAATGCCTACCTGATTAATTA 58.178 36.000 0.00 0.00 0.00 1.40
665 730 5.680619 TGTCGAATGCCTACCTGATTAATT 58.319 37.500 0.00 0.00 0.00 1.40
711 776 7.948357 ACAACTACAAATATATACTCGCTGGA 58.052 34.615 0.00 0.00 0.00 3.86
746 811 3.582647 TGGGCTGTAAGATTGTGAGAAGA 59.417 43.478 0.00 0.00 34.07 2.87
824 895 5.300411 TCCCATATATATCATGCTGCTGG 57.700 43.478 0.00 0.00 0.00 4.85
868 946 2.939103 GCTTTGCTTGATCCACGTATCT 59.061 45.455 0.00 0.00 0.00 1.98
881 959 6.581171 AAGCTAAACTAAGATGCTTTGCTT 57.419 33.333 0.00 0.00 40.51 3.91
883 961 6.747739 GGTTAAGCTAAACTAAGATGCTTTGC 59.252 38.462 3.89 0.00 42.81 3.68
972 1067 2.352814 CGGAACTCAAGACACCTCGATT 60.353 50.000 0.00 0.00 0.00 3.34
1068 1163 2.123077 CTCTCCGGCTCCCTCCAT 60.123 66.667 0.00 0.00 0.00 3.41
1153 1248 2.037527 GAGGAGGTGGAGGTCGGT 59.962 66.667 0.00 0.00 0.00 4.69
1228 1323 1.683385 CAGCTCCATGTCGACCTCATA 59.317 52.381 14.12 0.00 0.00 2.15
1465 1566 5.129320 TGAACTAGCATAGAAGATCCAAGCA 59.871 40.000 0.00 0.00 42.77 3.91
1466 1567 5.605534 TGAACTAGCATAGAAGATCCAAGC 58.394 41.667 0.00 0.00 42.77 4.01
1478 1579 9.953565 AGTTACAAGGTATTTTGAACTAGCATA 57.046 29.630 0.00 0.00 32.17 3.14
1479 1580 8.863872 AGTTACAAGGTATTTTGAACTAGCAT 57.136 30.769 0.00 0.00 32.17 3.79
1480 1581 7.934665 TGAGTTACAAGGTATTTTGAACTAGCA 59.065 33.333 0.00 0.00 33.11 3.49
1481 1582 8.319143 TGAGTTACAAGGTATTTTGAACTAGC 57.681 34.615 0.00 0.00 33.11 3.42
1499 1600 4.362470 ACCTGGGTTTACCTTGAGTTAC 57.638 45.455 0.00 0.00 41.11 2.50
1516 1617 9.507280 CATGTAATATGCTCAAAGTTTTACCTG 57.493 33.333 0.00 0.00 0.00 4.00
1531 1632 9.703892 ACTAGTGAATCTCTTCATGTAATATGC 57.296 33.333 0.00 0.00 43.08 3.14
1535 1636 7.202047 GGGGACTAGTGAATCTCTTCATGTAAT 60.202 40.741 0.00 0.00 43.08 1.89
1541 1642 4.338795 AGGGGACTAGTGAATCTCTTCA 57.661 45.455 0.00 0.00 40.61 3.02
1561 1662 7.439356 GGTGAATCTCCTTTTTCTTGGAAAAAG 59.561 37.037 25.86 25.86 43.32 2.27
1567 1668 4.321527 GCTGGTGAATCTCCTTTTTCTTGG 60.322 45.833 2.86 0.00 0.00 3.61
1568 1669 4.522022 AGCTGGTGAATCTCCTTTTTCTTG 59.478 41.667 2.86 0.00 0.00 3.02
1578 1680 6.560253 TTGTTTTTCTAGCTGGTGAATCTC 57.440 37.500 0.00 0.00 0.00 2.75
1579 1681 6.321181 TGTTTGTTTTTCTAGCTGGTGAATCT 59.679 34.615 0.00 0.00 0.00 2.40
1587 1689 9.997482 TTAAAGTAGTGTTTGTTTTTCTAGCTG 57.003 29.630 0.00 0.00 0.00 4.24
1600 1738 8.870879 GCTACGAATCTGATTAAAGTAGTGTTT 58.129 33.333 24.62 0.00 34.35 2.83
1608 1746 9.825972 TTTCTTTTGCTACGAATCTGATTAAAG 57.174 29.630 2.28 7.81 0.00 1.85
1611 1749 8.999431 ACTTTTCTTTTGCTACGAATCTGATTA 58.001 29.630 2.28 0.00 0.00 1.75
1621 1759 3.541711 CGGACACTTTTCTTTTGCTACG 58.458 45.455 0.00 0.00 0.00 3.51
1633 1772 4.884668 TGATAGTTTCTCCGGACACTTT 57.115 40.909 0.00 0.00 34.70 2.66
1651 1792 7.062749 TGACCAAACTTAGTCACTAGTTGAT 57.937 36.000 0.00 0.00 38.07 2.57
1688 1829 1.885887 TCCATTTGTCTTTCGGCTTGG 59.114 47.619 0.00 0.00 0.00 3.61
1692 1833 3.244976 CACATTCCATTTGTCTTTCGGC 58.755 45.455 0.00 0.00 0.00 5.54
1727 1868 4.948004 ACATGAATGCAACATGATGAGAGT 59.052 37.500 30.25 13.11 45.22 3.24
1731 1872 5.646577 TTGACATGAATGCAACATGATGA 57.353 34.783 30.25 18.00 45.22 2.92
1750 1891 5.936956 GCCCATGTTGACCAAAAATTATTGA 59.063 36.000 0.00 0.00 31.84 2.57
1751 1892 5.939296 AGCCCATGTTGACCAAAAATTATTG 59.061 36.000 0.00 0.00 0.00 1.90
1756 1897 5.559148 TTTAGCCCATGTTGACCAAAAAT 57.441 34.783 0.00 0.00 0.00 1.82
1786 1927 4.159321 CAGAGCACTAATCACAGAGGAGAA 59.841 45.833 0.00 0.00 0.00 2.87
1791 1936 3.523606 AGCAGAGCACTAATCACAGAG 57.476 47.619 0.00 0.00 0.00 3.35
1824 1970 9.107367 GACGAATCACTTGTTTTCTTAAGATTG 57.893 33.333 5.89 0.00 0.00 2.67
1886 2076 5.527582 GCCGTCCAAGAGATGTATATTGTTT 59.472 40.000 0.00 0.00 0.00 2.83
1952 2144 8.152898 CCTGGATATTTCTGTATTGATGTCTGA 58.847 37.037 0.00 0.00 0.00 3.27
1953 2145 7.935755 ACCTGGATATTTCTGTATTGATGTCTG 59.064 37.037 0.00 0.00 0.00 3.51
1967 2159 7.681939 TCACTTGTAACAACCTGGATATTTC 57.318 36.000 0.00 0.00 0.00 2.17
2014 2206 9.216117 GGTCACAAACTACAAATGACTAGTATT 57.784 33.333 0.00 0.00 39.68 1.89
2015 2207 8.372459 TGGTCACAAACTACAAATGACTAGTAT 58.628 33.333 0.00 0.00 39.68 2.12
2017 2209 6.588204 TGGTCACAAACTACAAATGACTAGT 58.412 36.000 0.00 0.00 39.68 2.57
2018 2210 6.347725 GCTGGTCACAAACTACAAATGACTAG 60.348 42.308 10.60 10.60 46.10 2.57
2023 2215 4.290155 GTGCTGGTCACAAACTACAAATG 58.710 43.478 0.00 0.00 44.98 2.32
2044 2236 4.274705 TCGTGTATTGCTGATTTGTTGTGT 59.725 37.500 0.00 0.00 0.00 3.72
2047 2239 7.376866 GGATATTCGTGTATTGCTGATTTGTTG 59.623 37.037 0.00 0.00 0.00 3.33
2049 2241 6.292865 CGGATATTCGTGTATTGCTGATTTGT 60.293 38.462 0.00 0.00 0.00 2.83
2089 2281 8.383175 TCACTCCCTCAAATCTTAGTTACAATT 58.617 33.333 0.00 0.00 0.00 2.32
2091 2283 7.016268 ACTCACTCCCTCAAATCTTAGTTACAA 59.984 37.037 0.00 0.00 0.00 2.41
2092 2284 6.497259 ACTCACTCCCTCAAATCTTAGTTACA 59.503 38.462 0.00 0.00 0.00 2.41
2100 2292 3.515562 AGTCACTCACTCCCTCAAATCT 58.484 45.455 0.00 0.00 0.00 2.40
2101 2293 3.971245 AGTCACTCACTCCCTCAAATC 57.029 47.619 0.00 0.00 0.00 2.17
2102 2294 4.163078 CCATAGTCACTCACTCCCTCAAAT 59.837 45.833 0.00 0.00 36.43 2.32
2103 2295 3.515502 CCATAGTCACTCACTCCCTCAAA 59.484 47.826 0.00 0.00 36.43 2.69
2104 2296 3.099905 CCATAGTCACTCACTCCCTCAA 58.900 50.000 0.00 0.00 36.43 3.02
2105 2297 2.739943 CCATAGTCACTCACTCCCTCA 58.260 52.381 0.00 0.00 36.43 3.86
2106 2298 1.410882 GCCATAGTCACTCACTCCCTC 59.589 57.143 0.00 0.00 36.43 4.30
2107 2299 1.490574 GCCATAGTCACTCACTCCCT 58.509 55.000 0.00 0.00 36.43 4.20
2108 2300 0.466124 GGCCATAGTCACTCACTCCC 59.534 60.000 0.00 0.00 36.43 4.30
2109 2301 0.466124 GGGCCATAGTCACTCACTCC 59.534 60.000 4.39 0.00 36.43 3.85
2110 2302 1.137872 CTGGGCCATAGTCACTCACTC 59.862 57.143 6.72 0.00 36.43 3.51
2111 2303 1.198713 CTGGGCCATAGTCACTCACT 58.801 55.000 6.72 0.00 39.41 3.41
2112 2304 0.905357 ACTGGGCCATAGTCACTCAC 59.095 55.000 6.72 0.00 0.00 3.51
2113 2305 1.195115 GACTGGGCCATAGTCACTCA 58.805 55.000 25.96 3.82 43.12 3.41
2114 2306 0.103208 CGACTGGGCCATAGTCACTC 59.897 60.000 28.38 11.18 43.65 3.51
2115 2307 0.324368 TCGACTGGGCCATAGTCACT 60.324 55.000 28.38 4.07 43.65 3.41
2116 2308 0.179108 GTCGACTGGGCCATAGTCAC 60.179 60.000 28.38 22.50 43.65 3.67
2117 2309 0.324368 AGTCGACTGGGCCATAGTCA 60.324 55.000 28.38 17.73 43.65 3.41
2118 2310 0.824759 AAGTCGACTGGGCCATAGTC 59.175 55.000 20.85 22.80 40.83 2.59
2119 2311 1.755380 GTAAGTCGACTGGGCCATAGT 59.245 52.381 20.85 11.30 0.00 2.12
2120 2312 1.754803 TGTAAGTCGACTGGGCCATAG 59.245 52.381 20.85 4.64 0.00 2.23
2121 2313 1.754803 CTGTAAGTCGACTGGGCCATA 59.245 52.381 20.85 3.31 0.00 2.74
2122 2314 0.537188 CTGTAAGTCGACTGGGCCAT 59.463 55.000 20.85 4.44 0.00 4.40
2123 2315 0.541063 TCTGTAAGTCGACTGGGCCA 60.541 55.000 20.85 5.85 33.76 5.36
2124 2316 0.824759 ATCTGTAAGTCGACTGGGCC 59.175 55.000 20.85 7.90 33.76 5.80
2125 2317 2.688958 ACTATCTGTAAGTCGACTGGGC 59.311 50.000 20.85 12.63 33.76 5.36
2126 2318 4.158025 ACAACTATCTGTAAGTCGACTGGG 59.842 45.833 20.85 9.66 33.76 4.45
2127 2319 5.312120 ACAACTATCTGTAAGTCGACTGG 57.688 43.478 20.85 10.02 33.76 4.00
2128 2320 7.085116 AGAAACAACTATCTGTAAGTCGACTG 58.915 38.462 20.85 6.56 33.76 3.51
2129 2321 7.175293 AGAGAAACAACTATCTGTAAGTCGACT 59.825 37.037 13.58 13.58 33.76 4.18
2130 2322 7.271653 CAGAGAAACAACTATCTGTAAGTCGAC 59.728 40.741 7.70 7.70 35.52 4.20
2131 2323 7.306213 CAGAGAAACAACTATCTGTAAGTCGA 58.694 38.462 0.00 0.00 35.52 4.20
2132 2324 7.499438 CAGAGAAACAACTATCTGTAAGTCG 57.501 40.000 0.00 0.00 35.52 4.18
2139 2331 6.347240 GCACTTGACAGAGAAACAACTATCTG 60.347 42.308 0.00 0.00 43.81 2.90
2148 2340 8.030106 ACTACTATTAGCACTTGACAGAGAAAC 58.970 37.037 0.00 0.00 0.00 2.78
2181 2373 8.784043 ACGCTAGTGTAAAAGATGAGAATTTTT 58.216 29.630 7.28 0.00 31.41 1.94
2184 2376 7.295952 CACGCTAGTGTAAAAGATGAGAATT 57.704 36.000 8.97 0.00 43.15 2.17
2185 2377 6.893958 CACGCTAGTGTAAAAGATGAGAAT 57.106 37.500 8.97 0.00 43.15 2.40
2214 2406 2.866762 GCAATCGTCCCATCAGACTTAC 59.133 50.000 0.00 0.00 34.46 2.34
2215 2407 2.158957 GGCAATCGTCCCATCAGACTTA 60.159 50.000 0.00 0.00 34.46 2.24
2223 2415 0.033208 ACCATTGGCAATCGTCCCAT 60.033 50.000 10.36 0.00 0.00 4.00
2225 2417 0.679640 TCACCATTGGCAATCGTCCC 60.680 55.000 10.36 0.00 0.00 4.46
2239 2432 8.017418 AGGAAAAACATTTTCTTATGTCACCA 57.983 30.769 13.46 0.00 37.76 4.17
2247 2440 5.759273 TCGACCGAGGAAAAACATTTTCTTA 59.241 36.000 13.46 0.00 0.00 2.10
2250 2443 4.216731 GTCGACCGAGGAAAAACATTTTC 58.783 43.478 3.51 6.96 0.00 2.29
2255 2448 3.294079 GGTCGACCGAGGAAAAACA 57.706 52.632 20.85 0.00 0.00 2.83
2268 2461 2.997986 GGTTTTGCTATTTCTCGGTCGA 59.002 45.455 0.00 0.00 0.00 4.20
2270 2463 2.997986 TCGGTTTTGCTATTTCTCGGTC 59.002 45.455 0.00 0.00 0.00 4.79
2272 2465 3.187637 TGTTCGGTTTTGCTATTTCTCGG 59.812 43.478 0.00 0.00 0.00 4.63
2273 2466 4.398549 TGTTCGGTTTTGCTATTTCTCG 57.601 40.909 0.00 0.00 0.00 4.04
2326 2519 3.877508 GCTCCAAATAACCAGCGATACTT 59.122 43.478 0.00 0.00 0.00 2.24
2327 2520 3.134804 AGCTCCAAATAACCAGCGATACT 59.865 43.478 0.00 0.00 36.95 2.12
2332 2525 3.876914 TCATAAGCTCCAAATAACCAGCG 59.123 43.478 0.00 0.00 36.95 5.18
2346 2539 1.142465 CCATCCTGCTGGTCATAAGCT 59.858 52.381 9.73 0.00 41.42 3.74
2348 2541 2.171237 TGTCCATCCTGCTGGTCATAAG 59.829 50.000 9.73 0.00 37.57 1.73
2355 2548 1.748122 GCTGTGTCCATCCTGCTGG 60.748 63.158 2.58 2.58 37.66 4.85
2356 2549 0.538584 TAGCTGTGTCCATCCTGCTG 59.461 55.000 0.00 0.00 36.66 4.41
2370 2563 1.974236 ACAGGGCCTATAGCTTAGCTG 59.026 52.381 17.97 0.46 40.10 4.24
2374 2567 3.208747 GCAAACAGGGCCTATAGCTTA 57.791 47.619 5.28 0.00 43.05 3.09
2375 2568 2.058593 GCAAACAGGGCCTATAGCTT 57.941 50.000 5.28 0.00 43.05 3.74
2376 2569 3.808984 GCAAACAGGGCCTATAGCT 57.191 52.632 5.28 0.00 43.05 3.32
2398 2591 1.328279 GGGTTTGAAAGTCCACCAGG 58.672 55.000 0.00 0.00 0.00 4.45
2399 2592 1.681264 GTGGGTTTGAAAGTCCACCAG 59.319 52.381 15.40 0.00 42.66 4.00
2506 2703 9.362151 TGGAATATAGTGGGTTATGGATTTTTC 57.638 33.333 0.00 0.00 0.00 2.29
2512 2709 6.102615 AGCTTTGGAATATAGTGGGTTATGGA 59.897 38.462 0.00 0.00 0.00 3.41
2521 2718 6.283694 TCTGTGCTAGCTTTGGAATATAGTG 58.716 40.000 17.23 0.00 0.00 2.74
2533 2730 3.397482 CTGAACTGTTCTGTGCTAGCTT 58.603 45.455 20.18 0.00 0.00 3.74
2537 2734 1.605457 CCGCTGAACTGTTCTGTGCTA 60.605 52.381 26.01 5.83 37.67 3.49
2538 2735 0.882042 CCGCTGAACTGTTCTGTGCT 60.882 55.000 26.01 0.00 37.67 4.40
2539 2736 1.571460 CCGCTGAACTGTTCTGTGC 59.429 57.895 26.01 21.40 37.67 4.57
2540 2737 1.159713 TGCCGCTGAACTGTTCTGTG 61.160 55.000 25.04 25.04 38.40 3.66
2541 2738 1.146041 TGCCGCTGAACTGTTCTGT 59.854 52.632 22.81 0.00 0.00 3.41
2542 2739 1.159713 TGTGCCGCTGAACTGTTCTG 61.160 55.000 20.18 19.75 0.00 3.02
2543 2740 0.250467 ATGTGCCGCTGAACTGTTCT 60.250 50.000 20.18 0.00 0.00 3.01
2544 2741 0.166814 GATGTGCCGCTGAACTGTTC 59.833 55.000 13.49 13.49 0.00 3.18
2545 2742 0.534877 TGATGTGCCGCTGAACTGTT 60.535 50.000 0.00 0.00 0.00 3.16
2556 2753 1.665679 CAATGTCTACGGTGATGTGCC 59.334 52.381 0.00 0.00 0.00 5.01
2575 2773 2.492088 CTGAACTGACACCGGTCTATCA 59.508 50.000 2.59 8.44 44.61 2.15
2667 2865 8.103305 TGAAGTAGTTATCTCCTCTGCAAATTT 58.897 33.333 0.00 0.00 0.00 1.82
2669 2867 7.187824 TGAAGTAGTTATCTCCTCTGCAAAT 57.812 36.000 0.00 0.00 0.00 2.32
2678 2876 8.561738 TTGGTTCATTTGAAGTAGTTATCTCC 57.438 34.615 0.00 0.00 34.27 3.71
2734 2932 5.963176 TCAGATAAGAACATGCTTGCAAA 57.037 34.783 0.00 0.00 0.00 3.68
2735 2933 5.474532 ACTTCAGATAAGAACATGCTTGCAA 59.525 36.000 0.00 0.00 0.00 4.08
2736 2934 5.005740 ACTTCAGATAAGAACATGCTTGCA 58.994 37.500 0.00 0.00 0.00 4.08
2737 2935 5.330295 CACTTCAGATAAGAACATGCTTGC 58.670 41.667 0.00 0.00 0.00 4.01
2738 2936 5.123502 AGCACTTCAGATAAGAACATGCTTG 59.876 40.000 0.00 0.00 39.80 4.01
2739 2937 5.251764 AGCACTTCAGATAAGAACATGCTT 58.748 37.500 0.00 0.00 39.80 3.91
2740 2938 4.841422 AGCACTTCAGATAAGAACATGCT 58.159 39.130 0.00 0.00 38.81 3.79
2787 2985 2.129607 CAATTTCAGGTGCACAACTGC 58.870 47.619 20.43 0.00 45.49 4.40
2789 2987 3.554934 TCTCAATTTCAGGTGCACAACT 58.445 40.909 20.43 4.25 0.00 3.16
2790 2988 3.988379 TCTCAATTTCAGGTGCACAAC 57.012 42.857 20.43 1.46 0.00 3.32
2791 2989 3.698539 TGTTCTCAATTTCAGGTGCACAA 59.301 39.130 20.43 4.28 0.00 3.33
2792 2990 3.066621 GTGTTCTCAATTTCAGGTGCACA 59.933 43.478 20.43 0.00 0.00 4.57
2793 2991 3.632189 GTGTTCTCAATTTCAGGTGCAC 58.368 45.455 8.80 8.80 0.00 4.57
2794 2992 2.290367 CGTGTTCTCAATTTCAGGTGCA 59.710 45.455 0.00 0.00 0.00 4.57
2795 2993 2.290641 ACGTGTTCTCAATTTCAGGTGC 59.709 45.455 0.00 0.00 0.00 5.01
2806 3004 1.269569 ACGCAGATCAACGTGTTCTCA 60.270 47.619 11.64 0.00 41.76 3.27
2807 3005 1.419374 ACGCAGATCAACGTGTTCTC 58.581 50.000 11.64 0.00 41.76 2.87
2813 3011 0.038618 TAGTGCACGCAGATCAACGT 60.039 50.000 12.01 7.17 44.75 3.99
2814 3012 0.642291 CTAGTGCACGCAGATCAACG 59.358 55.000 12.01 5.91 0.00 4.10
2815 3013 1.996292 TCTAGTGCACGCAGATCAAC 58.004 50.000 17.17 0.00 0.00 3.18
2819 3017 3.599343 TCAATTTCTAGTGCACGCAGAT 58.401 40.909 20.43 8.01 0.00 2.90
2820 3018 3.038788 TCAATTTCTAGTGCACGCAGA 57.961 42.857 17.17 17.17 0.00 4.26
2822 3020 3.181521 CGAATCAATTTCTAGTGCACGCA 60.182 43.478 12.01 2.31 31.73 5.24
2823 3021 3.181520 ACGAATCAATTTCTAGTGCACGC 60.182 43.478 12.01 0.00 31.73 5.34
2824 3022 4.584029 ACGAATCAATTTCTAGTGCACG 57.416 40.909 12.01 0.00 31.73 5.34
2826 3024 6.312399 ACAAACGAATCAATTTCTAGTGCA 57.688 33.333 0.00 0.00 31.73 4.57
2827 3025 7.493313 CAAACAAACGAATCAATTTCTAGTGC 58.507 34.615 0.00 0.00 31.73 4.40
2828 3026 7.167302 TGCAAACAAACGAATCAATTTCTAGTG 59.833 33.333 0.00 0.00 31.73 2.74
2829 3027 7.199766 TGCAAACAAACGAATCAATTTCTAGT 58.800 30.769 0.00 0.00 31.73 2.57
2830 3028 7.148918 CCTGCAAACAAACGAATCAATTTCTAG 60.149 37.037 0.00 0.00 31.73 2.43
2831 3029 6.640499 CCTGCAAACAAACGAATCAATTTCTA 59.360 34.615 0.00 0.00 31.73 2.10
2832 3030 5.463061 CCTGCAAACAAACGAATCAATTTCT 59.537 36.000 0.00 0.00 31.73 2.52
2833 3031 5.669122 CCTGCAAACAAACGAATCAATTTC 58.331 37.500 0.00 0.00 0.00 2.17
2834 3032 4.024977 GCCTGCAAACAAACGAATCAATTT 60.025 37.500 0.00 0.00 0.00 1.82
2835 3033 3.494251 GCCTGCAAACAAACGAATCAATT 59.506 39.130 0.00 0.00 0.00 2.32
2839 3037 2.132740 TGCCTGCAAACAAACGAATC 57.867 45.000 0.00 0.00 0.00 2.52
2840 3038 2.818130 ATGCCTGCAAACAAACGAAT 57.182 40.000 0.00 0.00 0.00 3.34
2841 3039 3.005261 ACATATGCCTGCAAACAAACGAA 59.995 39.130 1.58 0.00 0.00 3.85
2842 3040 2.556189 ACATATGCCTGCAAACAAACGA 59.444 40.909 1.58 0.00 0.00 3.85
2843 3041 2.662637 CACATATGCCTGCAAACAAACG 59.337 45.455 1.58 0.00 0.00 3.60
2844 3042 2.995258 CCACATATGCCTGCAAACAAAC 59.005 45.455 1.58 0.00 0.00 2.93
2845 3043 2.896044 TCCACATATGCCTGCAAACAAA 59.104 40.909 1.58 0.00 0.00 2.83
2846 3044 2.492881 CTCCACATATGCCTGCAAACAA 59.507 45.455 1.58 0.00 0.00 2.83
2848 3046 1.406539 CCTCCACATATGCCTGCAAAC 59.593 52.381 1.58 0.00 0.00 2.93
2873 3120 2.184579 CGCCGAACCTCCTTCTCC 59.815 66.667 0.00 0.00 0.00 3.71
2888 3135 2.359850 TTGTCATCCACCAGGCGC 60.360 61.111 0.00 0.00 33.74 6.53
2891 3138 0.692476 TGAGGTTGTCATCCACCAGG 59.308 55.000 2.77 0.00 0.00 4.45
2940 3187 6.852664 AGTAATAATTGGTTAACTGCTGTGC 58.147 36.000 5.42 0.00 0.00 4.57
2966 3273 6.246420 ACATTTTAGCAGTGTCAAGACATC 57.754 37.500 6.15 1.05 43.97 3.06
2973 3280 8.012809 CGTGTAAATTACATTTTAGCAGTGTCA 58.987 33.333 9.22 0.00 41.34 3.58
2982 3289 9.731819 TTGCAGTTTCGTGTAAATTACATTTTA 57.268 25.926 9.22 0.00 41.34 1.52
2986 3293 8.635877 TTTTTGCAGTTTCGTGTAAATTACAT 57.364 26.923 9.22 0.00 41.34 2.29
3015 3322 0.961019 TTGAGTTGCATTGGTGAGGC 59.039 50.000 0.00 0.00 35.12 4.70
3024 3331 4.645535 TCTCTAAGCACTTTGAGTTGCAT 58.354 39.130 17.42 0.00 41.16 3.96
3052 3390 8.584157 TGTTGCAGATGTTATGGAAAACTAATT 58.416 29.630 0.00 0.00 29.33 1.40
3055 3393 7.611467 AGATGTTGCAGATGTTATGGAAAACTA 59.389 33.333 0.00 0.00 29.33 2.24
3069 3407 5.648178 TTTGCATGTAAGATGTTGCAGAT 57.352 34.783 0.00 0.00 44.99 2.90
3080 3418 7.591006 AATTGAAGAAGCATTTGCATGTAAG 57.409 32.000 5.20 0.00 45.16 2.34
3087 3425 5.406175 TGTTGCTAATTGAAGAAGCATTTGC 59.594 36.000 5.26 0.00 45.09 3.68
3118 3521 6.092807 GTGGTCAGATTACAGAATCAAAGGAC 59.907 42.308 0.87 0.00 43.51 3.85
3122 3525 6.533730 AGTGTGGTCAGATTACAGAATCAAA 58.466 36.000 0.87 0.00 43.51 2.69
3164 3567 4.126524 GCTGCCGATCAGGTTACC 57.873 61.111 0.00 0.00 43.06 2.85
3169 3572 2.178890 GCTTCAGCTGCCGATCAGG 61.179 63.158 9.47 0.00 43.06 3.86
3204 3607 0.835941 AGCTCTTGGTAGGCAGGATG 59.164 55.000 0.00 0.00 40.87 3.51
3213 3616 1.038130 GCCGGAGAGAGCTCTTGGTA 61.038 60.000 19.36 0.00 40.61 3.25
3246 3649 3.520696 TCTGATCCCCTTTCAGAACTGA 58.479 45.455 0.00 0.00 44.94 3.41
3281 3684 1.164411 CCAAAATACGCCTGTGCTCA 58.836 50.000 0.00 0.00 34.43 4.26
3287 3690 2.080693 TGTACTGCCAAAATACGCCTG 58.919 47.619 0.00 0.00 0.00 4.85
3289 3692 3.562567 TTTGTACTGCCAAAATACGCC 57.437 42.857 0.00 0.00 31.66 5.68
3293 3696 8.871629 TCTCCTAAATTTGTACTGCCAAAATA 57.128 30.769 0.00 0.00 37.81 1.40
3358 3761 9.688091 AGATCGATCTTGTACATAGGTATACAT 57.312 33.333 22.32 0.00 31.97 2.29
3375 3784 8.453238 ACGCATATATAGGTTTAGATCGATCT 57.547 34.615 29.58 29.58 40.86 2.75
3384 3793 9.787435 AAAAGATCCAACGCATATATAGGTTTA 57.213 29.630 0.00 0.00 0.00 2.01
3394 3803 3.342719 TGCAGAAAAGATCCAACGCATA 58.657 40.909 0.00 0.00 0.00 3.14
3399 3808 5.776744 AGACAAATGCAGAAAAGATCCAAC 58.223 37.500 0.00 0.00 0.00 3.77
3400 3809 5.771666 AGAGACAAATGCAGAAAAGATCCAA 59.228 36.000 0.00 0.00 0.00 3.53
3402 3811 5.893897 AGAGACAAATGCAGAAAAGATCC 57.106 39.130 0.00 0.00 0.00 3.36
3404 3813 8.627208 TTTCTAGAGACAAATGCAGAAAAGAT 57.373 30.769 0.00 0.00 31.12 2.40
3405 3814 7.933577 TCTTTCTAGAGACAAATGCAGAAAAGA 59.066 33.333 0.00 0.00 33.11 2.52
3407 3816 8.450578 TTCTTTCTAGAGACAAATGCAGAAAA 57.549 30.769 0.00 0.00 33.11 2.29
3411 3820 8.092521 TCTTTTCTTTCTAGAGACAAATGCAG 57.907 34.615 0.00 0.00 0.00 4.41
3414 3823 9.374960 CGTTTCTTTTCTTTCTAGAGACAAATG 57.625 33.333 0.00 0.00 0.00 2.32
3415 3824 8.560374 CCGTTTCTTTTCTTTCTAGAGACAAAT 58.440 33.333 0.00 0.00 0.00 2.32
3417 3826 7.270047 TCCGTTTCTTTTCTTTCTAGAGACAA 58.730 34.615 0.00 0.00 0.00 3.18
3425 3834 5.353400 ACGAAACTCCGTTTCTTTTCTTTCT 59.647 36.000 15.07 0.00 46.55 2.52
3426 3835 5.566623 ACGAAACTCCGTTTCTTTTCTTTC 58.433 37.500 15.07 0.00 46.55 2.62
3465 3875 9.573133 AAGTTAATCTGAACAAGAACACAAAAG 57.427 29.630 0.00 0.00 38.79 2.27
3475 3885 7.965107 GTGGCAAGATAAGTTAATCTGAACAAG 59.035 37.037 0.00 0.00 36.34 3.16
3490 3900 5.253330 CACTAGGGAAAAGTGGCAAGATAA 58.747 41.667 0.00 0.00 40.56 1.75
3581 3991 7.512058 AGACTTATCATCATGTCCTAACCATCT 59.488 37.037 0.00 0.00 0.00 2.90
3607 4017 1.547675 GGCTCAAACTCCATGGGTCAA 60.548 52.381 13.02 0.00 0.00 3.18
3652 4062 0.753867 TCTTACGGTTGAGTGGTGCA 59.246 50.000 0.00 0.00 0.00 4.57
3697 4112 8.642020 CCAAAAGAGCAATAAAATTCTTCGAAG 58.358 33.333 19.35 19.35 0.00 3.79
3699 4114 6.586082 GCCAAAAGAGCAATAAAATTCTTCGA 59.414 34.615 0.00 0.00 0.00 3.71
3700 4115 6.183360 GGCCAAAAGAGCAATAAAATTCTTCG 60.183 38.462 0.00 0.00 0.00 3.79
3804 4230 1.390123 CGAGTGTAATGCAGTTGTCCG 59.610 52.381 0.00 0.00 0.00 4.79
3818 4244 9.840427 CAATTAAAGAAAATGTTATCCGAGTGT 57.160 29.630 0.00 0.00 0.00 3.55
3841 4267 7.589958 TTGTACCATTTAACAACTGTCCAAT 57.410 32.000 0.00 0.00 30.88 3.16
3884 4310 7.445096 CCACCCTTTTCTTGCTCAATTTTAAAT 59.555 33.333 0.00 0.00 0.00 1.40
3926 4352 4.571984 GCTTCCATTACATTCCAAAATGGC 59.428 41.667 8.17 0.00 46.10 4.40
4043 4471 8.312896 TGCTCTATTTGTTAATTGTTACGTGA 57.687 30.769 0.00 0.00 0.00 4.35
4081 4509 6.212955 CAAAACAATACCGAATGAGGTGTTT 58.787 36.000 2.85 0.00 41.85 2.83
4083 4511 4.320935 GCAAAACAATACCGAATGAGGTGT 60.321 41.667 2.85 0.00 45.54 4.16
4117 4554 6.701145 TGTTCTGTGCCAATAAACAGTAAA 57.299 33.333 3.01 0.00 43.49 2.01
4148 4585 0.524862 GTGTGAAGCATGGCCTGAAG 59.475 55.000 3.32 0.00 0.00 3.02
4210 4647 2.002586 CAGTCGTCGCCATTTCTGATT 58.997 47.619 0.00 0.00 0.00 2.57
4222 4659 1.131315 TGAAGATGCTCTCAGTCGTCG 59.869 52.381 0.00 0.00 0.00 5.12
4235 4672 4.845580 AGGGCGCGGCTGAAGATG 62.846 66.667 32.30 0.00 0.00 2.90
4236 4673 4.537433 GAGGGCGCGGCTGAAGAT 62.537 66.667 32.30 11.35 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.